AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382620 MtrunA17_Chr3g0137941 91.500 400 12 2 1 378 1 400 0.0 730
Msa0382620 MtrunA17_Chr1g0149111 68.796 407 91 5 2 372 5 411 0.0 520
Msa0382620 MtrunA17_Chr4g0063561 60.156 384 114 8 25 375 21 398 7.40e-153 436
Msa0382620 MtrunA17_Chr4g0000261 35.836 293 150 5 117 372 63 354 3.85e-57 190
Msa0382620 MtrunA17_Chr3g0131501 33.813 278 160 3 118 371 203 480 2.68e-45 162
Msa0382620 MtrunA17_Chr3g0131501 26.556 241 134 7 73 271 239 478 1.46e-14 75.1
Msa0382620 MtrunA17_Chr8g0385571 34.532 278 158 3 118 371 225 502 6.40e-45 161
Msa0382620 MtrunA17_Chr8g0382201 33.106 293 154 3 118 371 193 482 2.59e-43 157
Msa0382620 MtrunA17_Chr8g0347451 31.803 305 157 7 118 371 49 353 3.77e-41 148
Msa0382620 MtrunA17_Chr8g0347451 29.299 157 103 2 225 374 85 240 1.51e-17 83.2
Msa0382620 MtrunA17_Chr5g0396801 31.353 303 159 6 118 371 36 338 5.82e-41 147
Msa0382620 MtrunA17_Chr5g0396801 27.670 206 116 4 200 374 24 227 8.13e-18 84.0
Msa0382620 MtrunA17_Chr3g0115801 33.333 297 156 4 114 371 110 403 1.72e-40 147
Msa0382620 MtrunA17_Chr7g0252401 32.857 280 157 5 118 371 205 479 1.82e-40 149
Msa0382620 MtrunA17_Chr7g0240341 31.186 295 163 9 116 371 21 314 3.99e-35 131
Msa0382620 MtrunA17_Chr7g0242311 30.545 275 153 7 131 377 98 362 2.08e-32 125
Msa0382620 MtrunA17_Chr7g0242311 24.561 171 113 2 117 271 184 354 9.08e-13 68.9
Msa0382620 MtrunA17_Chr2g0296061 29.221 308 160 7 122 371 17 324 2.56e-32 124
Msa0382620 MtrunA17_Chr3g0135861 27.907 301 168 6 117 371 32 329 1.41e-31 122
Msa0382620 MtrunA17_Chr4g0067231 27.044 318 172 5 114 371 8 325 2.33e-31 121
Msa0382620 MtrunA17_Chr4g0006851 31.884 276 148 9 131 377 100 364 7.85e-31 120
Msa0382620 MtrunA17_Chr6g0488081 27.645 293 170 5 118 371 17 306 1.48e-30 119
Msa0382620 MtrunA17_Chr5g0436041 29.936 314 175 9 103 373 12 323 8.21e-27 108
Msa0382620 MtrunA17_Chr7g0269701 27.083 288 173 5 122 374 24 309 3.46e-25 104
Msa0382620 MtrunA17_Chr7g0269701 37.363 91 54 2 291 378 25 115 4.06e-11 63.5
Msa0382620 MtrunA17_Chr8g0386871 27.839 273 167 6 122 371 322 587 1.60e-23 102
Msa0382620 MtrunA17_Chr6g0463041 32.075 159 103 2 215 371 85 240 8.72e-22 93.2
Msa0382620 MtrunA17_Chr1g0201361 29.123 285 164 8 118 378 45 315 4.72e-21 92.8
Msa0382620 MtrunA17_Chr8g0372531 26.690 281 160 8 134 371 28 305 4.75e-21 92.4
Msa0382620 MtrunA17_Chr8g0372531 25.683 183 119 4 192 373 32 198 5.54e-11 63.2
Msa0382620 MtrunA17_Chr4g0040341 24.910 277 164 6 123 359 78 350 7.68e-21 92.8
Msa0382620 MtrunA17_Chr5g0431531 25.606 289 179 8 120 378 39 321 3.21e-19 87.4
Msa0382620 MtrunA17_Chr5g0423111 25.818 275 167 7 132 371 33 305 5.51e-19 87.4
Msa0382620 MtrunA17_Chr5g0423111 28.859 149 104 2 228 375 59 206 5.23e-11 63.5
Msa0382620 MtrunA17_Chr3g0088301 25.271 277 163 6 123 359 96 368 1.03e-18 87.0
Msa0382620 MtrunA17_Chr2g0328891 26.482 253 141 6 155 372 111 353 1.68e-18 85.9
Msa0382620 MtrunA17_Chr2g0328891 29.814 161 93 4 225 372 106 259 5.45e-12 66.6
Msa0382620 MtrunA17_Chr1g0195101 25.191 262 158 6 139 373 55 305 2.62e-18 84.7
Msa0382620 MtrunA17_Chr6g0488341 25.957 235 144 6 158 371 6 231 3.43e-17 80.1
Msa0382620 MtrunA17_Chr6g0455381 27.119 295 167 8 126 376 21 311 6.62e-17 80.9
Msa0382620 MtrunA17_Chr8g0352031 25.090 279 162 7 123 359 71 344 1.60e-16 80.1
Msa0382620 MtrunA17_Chr3g0135801 27.660 188 120 6 202 378 50 232 1.96e-15 76.6
Msa0382620 MtrunA17_Chr8g0393031 25.000 276 159 9 126 359 24 293 1.12e-14 74.3
Msa0382620 MtrunA17_Chr8g0393031 28.571 161 95 4 225 372 58 211 1.69e-12 67.8
Msa0382620 MtrunA17_Chr7g0219891 23.891 293 177 8 126 375 25 314 1.24e-14 73.9
Msa0382620 MtrunA17_Chr8g0383321 24.354 271 171 5 122 374 54 308 4.50e-14 72.4
Msa0382620 MtrunA17_Chr4g0004571 21.575 292 198 4 112 375 8 296 5.28e-14 72.0
Msa0382620 MtrunA17_Chr1g0200171 22.662 278 187 7 117 376 522 789 7.87e-14 73.2
Msa0382620 MtrunA17_Chr5g0411411 23.810 294 181 6 118 371 7 297 8.58e-14 71.2
Msa0382620 MtrunA17_Chr6g0463351 22.519 262 178 4 136 373 83 343 9.68e-14 72.0
Msa0382620 MtrunA17_Chr3g0133111 23.673 245 152 5 160 373 72 312 4.66e-12 66.2
Msa0382620 MtrunA17_Chr8g0366791 23.630 292 184 7 118 371 7 297 6.28e-12 65.9
Msa0382620 MtrunA17_Chr4g0028531 21.201 283 181 7 115 361 17 293 2.46e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382620 AT4G32400.1 61.290 403 118 5 1 377 1 391 6.70e-168 474
Msa0382620 AT3G20240.1 35.836 293 148 5 118 372 50 340 2.68e-56 188
Msa0382620 AT5G64970.1 32.542 295 157 4 116 371 131 422 8.83e-42 152
Msa0382620 AT5G64970.1 29.032 155 107 1 222 376 162 313 1.36e-11 66.2
Msa0382620 AT5G64970.2 32.292 288 153 4 123 371 14 298 9.50e-41 146
Msa0382620 AT5G64970.2 29.032 155 107 1 222 376 38 189 8.45e-12 65.9
Msa0382620 AT5G51050.1 34.420 276 150 6 122 371 225 495 1.99e-38 144
Msa0382620 AT5G51050.1 26.891 238 130 7 76 272 260 494 1.47e-13 72.4
Msa0382620 AT5G61810.2 33.455 275 157 5 118 371 63 332 3.42e-38 140
Msa0382620 AT4G01100.1 30.164 305 162 6 118 371 40 344 4.33e-38 140
Msa0382620 AT4G01100.1 29.114 158 104 2 225 375 76 232 3.84e-18 85.1
Msa0382620 AT4G01100.2 29.781 319 159 7 118 371 40 358 2.18e-37 139
Msa0382620 AT4G01100.2 26.901 171 105 2 225 375 76 246 4.34e-17 82.4
Msa0382620 AT5G61810.1 33.700 273 155 5 120 371 208 475 2.56e-37 140
Msa0382620 AT5G61810.1 27.374 179 101 5 119 271 298 473 2.52e-12 68.6
Msa0382620 AT5G64970.3 31.769 277 147 4 116 353 131 404 9.17e-36 135
Msa0382620 AT5G64970.3 29.032 155 107 1 222 376 162 313 1.08e-11 66.2
Msa0382620 AT4G01100.3 29.932 294 155 6 129 371 1 294 2.12e-35 132
Msa0382620 AT4G01100.3 29.114 158 104 2 225 375 26 182 2.23e-18 85.1
Msa0382620 AT1G78180.1 32.997 297 150 8 118 372 126 415 2.83e-35 134
Msa0382620 AT3G53940.1 31.399 293 163 7 116 371 69 360 4.24e-35 132
Msa0382620 AT2G37890.1 31.169 308 162 9 107 371 32 332 1.07e-34 130
Msa0382620 AT5G07320.1 32.453 265 147 7 129 369 218 474 3.62e-34 132
Msa0382620 AT5G07320.1 29.452 146 100 2 225 370 239 381 6.26e-11 64.3
Msa0382620 AT5G01500.1 31.636 275 150 7 131 377 130 394 2.88e-31 123
Msa0382620 AT5G01500.1 32.237 152 96 2 227 378 160 304 4.05e-18 85.9
Msa0382620 AT5G01500.1 26.627 169 108 2 119 271 218 386 5.94e-11 63.9
Msa0382620 AT3G55640.1 31.081 296 164 8 116 373 34 327 5.44e-31 120
Msa0382620 AT3G55640.4 31.081 296 164 8 116 373 34 327 5.44e-31 120
Msa0382620 AT3G51870.1 29.455 275 156 8 131 377 102 366 6.26e-31 121
Msa0382620 AT3G21390.1 28.618 304 157 6 122 365 21 324 7.97e-31 120
Msa0382620 AT3G21390.1 30.201 149 97 3 225 369 64 209 1.49e-16 80.5
Msa0382620 AT3G21390.2 28.618 304 157 6 122 365 43 346 1.01e-30 120
Msa0382620 AT3G21390.2 30.201 149 97 3 225 369 86 231 1.90e-16 80.1
Msa0382620 AT4G26180.1 27.483 302 174 5 118 378 19 316 1.72e-30 119
Msa0382620 AT5G48970.1 25.723 311 170 6 122 371 24 334 2.44e-28 114
Msa0382620 AT5G48970.1 28.659 164 110 3 214 373 58 218 3.60e-17 82.0
Msa0382620 AT1G14560.1 29.452 292 146 8 131 371 38 320 7.19e-28 112
Msa0382620 AT4G26180.2 26.715 277 158 5 118 353 19 291 5.68e-26 106
Msa0382620 AT4G26180.2 32.468 154 93 2 227 369 56 209 5.12e-16 78.2
Msa0382620 AT5G48970.2 26.587 252 141 4 158 365 6 257 5.38e-25 103
Msa0382620 AT5G48970.2 27.451 153 104 3 228 376 1 150 2.66e-14 72.8
Msa0382620 AT5G66380.1 30.137 292 161 8 121 371 11 300 1.59e-23 99.8
Msa0382620 AT5G66380.1 26.042 192 126 3 188 378 24 200 4.74e-12 66.6
Msa0382620 AT1G14560.2 28.832 274 135 8 131 353 38 302 2.10e-22 96.7
Msa0382620 AT1G14560.2 29.375 160 92 3 227 369 62 217 7.17e-16 78.2
Msa0382620 AT1G34065.2 28.058 278 164 7 120 378 75 335 3.00e-21 94.0
Msa0382620 AT1G14560.3 33.117 154 94 2 224 371 72 222 3.80e-21 91.7
Msa0382620 AT2G30160.1 25.517 290 180 6 120 377 42 327 3.85e-21 93.6
Msa0382620 AT1G34065.1 28.058 278 164 7 120 378 82 342 3.93e-21 93.6
Msa0382620 AT1G07030.1 25.263 285 176 6 120 373 40 318 7.13e-21 92.8
Msa0382620 AT1G25380.1 27.574 272 155 7 132 365 33 300 2.73e-20 91.7
Msa0382620 AT1G25380.2 27.574 272 155 7 132 365 33 300 2.73e-20 91.7
Msa0382620 AT4G11440.1 27.338 278 176 5 118 371 328 603 6.90e-20 92.0
Msa0382620 AT4G11440.2 27.338 278 176 5 118 371 328 603 6.90e-20 92.0
Msa0382620 AT4G28390.1 24.820 278 163 8 123 359 86 358 4.53e-18 85.1
Msa0382620 AT4G28390.2 24.820 278 163 8 123 359 86 358 4.53e-18 85.1
Msa0382620 AT3G08580.2 24.731 279 163 7 123 359 87 360 3.13e-17 82.8
Msa0382620 AT3G08580.1 24.731 279 163 7 123 359 87 360 3.13e-17 82.8
Msa0382620 AT4G39460.2 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0382620 AT4G39460.1 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0382620 AT4G39460.3 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0382620 AT5G17400.1 27.843 255 143 10 138 359 43 289 8.82e-17 80.5
Msa0382620 AT5G17400.1 29.341 167 96 4 225 377 54 212 1.46e-12 68.2
Msa0382620 AT2G47490.1 25.704 284 169 6 132 378 29 307 1.14e-16 80.5
Msa0382620 AT5G13490.1 25.000 280 161 7 123 359 91 364 1.71e-16 80.9
Msa0382620 AT5G13490.1 29.448 163 104 3 225 378 128 288 1.17e-11 66.2
Msa0382620 AT5G13490.2 25.000 280 161 7 123 359 91 364 1.71e-16 80.9
Msa0382620 AT5G13490.2 29.448 163 104 3 225 378 128 288 1.17e-11 66.2
Msa0382620 AT5G46800.2 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0382620 AT5G46800.3 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0382620 AT5G46800.1 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0382620 AT5G56450.1 28.049 164 112 3 220 378 74 236 2.04e-15 77.0
Msa0382620 AT3G55640.2 30.612 147 94 3 228 368 79 223 4.22e-15 75.1
Msa0382620 AT3G55640.2 26.697 221 124 6 116 300 34 252 3.30e-11 63.5
Msa0382620 AT3G55640.3 30.612 147 94 3 228 368 79 223 4.22e-15 75.1
Msa0382620 AT3G55640.3 26.697 221 124 6 116 300 34 252 3.30e-11 63.5
Msa0382620 AT3G53940.2 27.273 220 124 5 116 300 69 287 9.68e-15 74.3
Msa0382620 AT3G53940.2 30.612 147 94 3 234 374 120 264 1.31e-14 73.9
Msa0382620 AT1G79900.1 22.692 260 177 3 136 375 32 287 1.22e-13 71.2
Msa0382620 AT1G79900.1 25.397 189 117 3 112 279 101 286 1.60e-12 68.2
Msa0382620 AT5G42130.1 26.471 272 164 8 133 374 131 396 1.33e-13 72.0
Msa0382620 AT5G42130.1 31.013 158 93 5 224 377 150 295 1.93e-11 65.5
Msa0382620 AT2G35800.1 24.275 276 186 9 117 376 542 810 1.84e-13 72.4
Msa0382620 AT5G09470.1 31.944 144 88 3 235 372 99 238 7.26e-13 69.3
Msa0382620 AT4G27940.1 25.869 259 152 7 153 371 149 407 1.45e-12 68.9
Msa0382620 AT5G58970.1 26.552 290 166 12 91 372 49 299 2.09e-12 67.8
Msa0382620 AT5G26200.1 22.378 286 175 7 132 370 51 336 7.84e-12 66.2
Msa0382620 AT2G39970.1 25.328 229 146 8 164 374 106 327 8.20e-12 66.2
Msa0382620 AT1G74240.1 32.500 160 98 4 223 378 186 339 1.02e-11 66.2
Msa0382620 AT1G74240.2 32.500 160 98 4 223 378 138 291 1.12e-11 65.5
Msa0382620 AT4G03115.2 27.673 159 103 3 222 378 70 218 2.73e-11 63.2
Msa0382620 AT4G03115.4 27.673 159 103 3 222 378 70 218 3.92e-11 62.8

Find 132 sgRNAs with CRISPR-Local

Find 629 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCACTAAAAGGAAATTT+AGG 0.125546 3_1:-85273332 None:intergenic
GATTCTAATTCCCCTGAAAA+TGG 0.247936 3_1:+85273302 Msa0382620:CDS
AAGTAATTGGTAGCCGAATA+TGG 0.290183 3_1:-85280844 None:intergenic
TTAACGTATAATTCACTAAA+AGG 0.290618 3_1:-85273341 None:intergenic
TATTGGAGTTATTCCATATT+CGG 0.294716 3_1:+85280831 Msa0382620:CDS
CACAGCAACACTGCACAAAA+AGG 0.295836 3_1:+85272874 Msa0382620:five_prime_UTR
GGCCTGACACCTAGTCTTAT+TGG 0.296680 3_1:+85280814 Msa0382620:CDS
TGGATGGAAGGGTTTGTTTA+GGG 0.298083 3_1:+85273634 Msa0382620:CDS
ATTCACTAAAAGGAAATTTA+GGG 0.305139 3_1:-85273331 None:intergenic
TGGCACCTTTGGAGACTATT+AGG 0.317047 3_1:+85273543 Msa0382620:CDS
GGGAGTTTGGACTGCTCTCC+AGG 0.329744 3_1:-85280420 None:intergenic
ATGGATGGAAGGGTTTGTTT+AGG 0.338034 3_1:+85273633 Msa0382620:CDS
TGATGCAGGAACTGGGAGTT+TGG 0.340339 3_1:-85280433 None:intergenic
TAAGGAATCCTTCTATTAGA+AGG 0.342750 3_1:+85273477 Msa0382620:CDS
TAGAACCACTGTGGCACCTT+TGG 0.351090 3_1:+85273532 Msa0382620:CDS
GAAATCTTGTTAATGTCATT+CGG 0.353717 3_1:+85273657 Msa0382620:CDS
GCAATCAATGATGCAGGAAC+TGG 0.354288 3_1:-85280441 None:intergenic
TTTGAGCCTAATGGTGTTAC+GGG 0.368589 3_1:+85273386 Msa0382620:CDS
AGTGTTGGTCAAGTGGGAAT+AGG 0.372936 3_1:+85273251 Msa0382620:CDS
AAATCTTGTTAATGTCATTC+GGG 0.378614 3_1:+85273658 Msa0382620:CDS
CTCTGGAAATTTGAGCCTAA+TGG 0.383482 3_1:+85273377 Msa0382620:CDS
GTGTTGGTCAAGTGGGAATA+GGG 0.395032 3_1:+85273252 Msa0382620:CDS
GTTCCTGCATCATTGATTGC+AGG 0.398153 3_1:+85280444 Msa0382620:CDS
AGATAACGACGAGGAGGAAT+AGG 0.402308 3_1:+85281191 Msa0382620:CDS
GGTCAAGTGGGAATAGGGTT+TGG 0.403207 3_1:+85273257 Msa0382620:CDS
GACAGTTTGTTTCAAGTTTG+AGG 0.418932 3_1:-85273051 None:intergenic
GACTATTAGGACTCATTTGA+TGG 0.419164 3_1:+85273556 Msa0382620:CDS
CTACACAACCTTCTAATAGA+AGG 0.424911 3_1:-85273485 None:intergenic
GAATCAGAAGGGTTTGGTTG+TGG 0.427235 3_1:-85273284 None:intergenic
GAATTAGAATCAGAAGGGTT+TGG 0.431685 3_1:-85273290 None:intergenic
CAGGGTCTATATAGAGGGCT+TGG 0.438449 3_1:+85281093 Msa0382620:CDS
ATTTGAGCCTAATGGTGTTA+CGG 0.440900 3_1:+85273385 Msa0382620:CDS
TGTTTATTTACGTTGCTGCC+AGG 0.444441 3_1:+85281400 Msa0382620:three_prime_UTR
CCTAATGGTGTTACGGGCAA+GGG 0.453681 3_1:+85273392 Msa0382620:CDS
GGACTGCTCTCCAGGCTTTG+CGG 0.454230 3_1:-85280412 None:intergenic
TGGAGCTCTCAGTGGAAGAC+AGG 0.455160 3_1:+85281017 Msa0382620:CDS
CAGCCGCTGAACCAATCAAA+AGG 0.456453 3_1:-85280936 None:intergenic
ACAGTTTGTTTCAAGTTTGA+GGG 0.457774 3_1:-85273050 None:intergenic
GCAGTTCCACAACTTGGCTT+CGG 0.459919 3_1:-85281231 None:intergenic
GGTGGTTTGTTTGCTAGTGT+TGG 0.463456 3_1:+85273236 Msa0382620:CDS
GCTCTCCAGGCTTTGCGGAT+AGG 0.463551 3_1:-85280407 None:intergenic
CTCCAATAAGACTAGGTGTC+AGG 0.465823 3_1:-85280816 None:intergenic
TCAACTTCATAAAATATGAT+TGG 0.469031 3_1:-85281511 None:intergenic
TTGATTGCAGGTGCCTGTGC+TGG 0.469256 3_1:+85280456 Msa0382620:CDS
ATTAATTGAATAATGATTCG+TGG 0.470394 3_1:-85272982 None:intergenic
ACTAGAACAAGAAGGGATCC+AGG 0.475653 3_1:+85281074 Msa0382620:CDS
CTCTTTGATGACAAAAGAGA+TGG 0.481584 3_1:+85273164 Msa0382620:CDS
TTGTGTAGTGGAGCAATTGC+TGG 0.481763 3_1:+85273500 Msa0382620:CDS
GGGATCCAGGGTCTATATAG+AGG 0.481983 3_1:+85281087 Msa0382620:CDS
CAGGATATTATGAAAACTGA+TGG 0.484050 3_1:+85273614 Msa0382620:CDS
CTTGTTCTAGTATGCTCAGA+AGG 0.484061 3_1:-85281062 None:intergenic
GCCTAATGGTGTTACGGGCA+AGG 0.486297 3_1:+85273391 Msa0382620:CDS
AGTGTCGTAGGCAAAGTAAT+TGG 0.491022 3_1:-85280857 None:intergenic
AGGCCTCTGTAAAGTTCTGC+AGG 0.491988 3_1:-85280796 None:intergenic
CATGAGGATTACTATTATCC+TGG 0.492331 3_1:+85273215 Msa0382620:CDS
AAGAACCTATCCGCAAAGCC+TGG 0.493720 3_1:+85280402 Msa0382620:CDS
GGAAGGTGAACAAGTTGTTA+AGG 0.501044 3_1:+85273415 Msa0382620:CDS
TATGCAGCAGTTCCACAACT+TGG 0.503611 3_1:-85281237 None:intergenic
CCCCTCTGAGAATGGAATGT+TGG 0.505283 3_1:+85281372 Msa0382620:three_prime_UTR
CCCTTGCCCGTAACACCATT+AGG 0.507798 3_1:-85273392 None:intergenic
TATTCAATCTAACACTAAGA+TGG 0.508904 3_1:-85273016 None:intergenic
ACAGCTATTTGCTTATGATA+CGG 0.513297 3_1:+85280374 Msa0382620:intron
AATCTAACACTAAGATGGAA+TGG 0.518111 3_1:-85273011 None:intergenic
TGCTTGCGAGCCACCTCAAG+TGG 0.518650 3_1:-85280985 None:intergenic
CAACCCCTCTGAGAATGGAA+TGG 0.522596 3_1:+85281320 Msa0382620:three_prime_UTR
GGATGGAAGGGTTTGTTTAG+GGG 0.528599 3_1:+85273635 Msa0382620:CDS
ATGAAAACTGATGGATGGAA+GGG 0.528727 3_1:+85273623 Msa0382620:CDS
TGTCACTCTGTGCTAAGAAA+AGG 0.530085 3_1:+85273070 Msa0382620:five_prime_UTR
TTAAGCTCAAGATTAAGATA+AGG 0.531801 3_1:+85273459 Msa0382620:CDS
GTTCCACAACTTGGCTTCGG+TGG 0.531988 3_1:-85281228 None:intergenic
TATGAAAACTGATGGATGGA+AGG 0.533911 3_1:+85273622 Msa0382620:CDS
TCAGGGGAATTAGAATCAGA+AGG 0.536789 3_1:-85273296 None:intergenic
ATGAATTGAAATGAATGCTA+AGG 0.540399 3_1:-85272938 None:intergenic
CATGAAAATAATTAAAGAAG+AGG 0.547955 3_1:+85280771 Msa0382620:CDS
TGCGCCTAGCAAGGCTATTG+AGG 0.550247 3_1:+85273682 Msa0382620:CDS
GTTTGCTAGTGTTGGTCAAG+TGG 0.552428 3_1:+85273244 Msa0382620:CDS
CAATCAATGATGCAGGAACT+GGG 0.552440 3_1:-85280440 None:intergenic
CCAAGACACAATGAAAAGCC+TGG 0.554074 3_1:-85281418 None:intergenic
TTTGCTAGTGTTGGTCAAGT+GGG 0.555292 3_1:+85273245 Msa0382620:CDS
ACCAACATTCCATTCTCAGA+GGG 0.556979 3_1:-85281373 None:intergenic
CATTCGGGTTGCGCCTAGCA+AGG 0.557121 3_1:+85273673 Msa0382620:CDS
TTAAGTATATTCAATCACTC+TGG 0.561876 3_1:+85273360 Msa0382620:CDS
ATGAAAGAGATTCCAGCGGC+TGG 0.561878 3_1:-85281138 None:intergenic
GCTCGCAAGCAAATGCAAGT+TGG 0.562624 3_1:+85280997 Msa0382620:CDS
CATTTGATGGTGGGAAGTAG+TGG 0.562649 3_1:+85273569 Msa0382620:CDS
ATTAGGACTCATTTGATGGT+GGG 0.563542 3_1:+85273560 Msa0382620:CDS
CAGGGGAATTAGAATCAGAA+GGG 0.563815 3_1:-85273295 None:intergenic
TTTCCACCGAAGCCAAGTTG+TGG 0.563835 3_1:+85281225 Msa0382620:three_prime_UTR
ATTACCTCAATAGCCTTGCT+AGG 0.568427 3_1:-85273686 None:intergenic
AGTTGAACTCACTCCAGCAC+AGG 0.568725 3_1:-85280469 None:intergenic
GAAACCATTCCATTCTCAGA+GGG 0.569376 3_1:-85281324 None:intergenic
AGCCGCTGAACCAATCAAAA+GGG 0.571340 3_1:-85280935 None:intergenic
GCACCTGCAATCAATGATGC+AGG 0.573834 3_1:-85280447 None:intergenic
TATTAGGACTCATTTGATGG+TGG 0.584361 3_1:+85273559 Msa0382620:CDS
AGAAGGTATGATGGATTCAG+TGG 0.585437 3_1:+85272851 None:intergenic
TCTATTAGAAGGTTGTGTAG+TGG 0.586868 3_1:+85273488 Msa0382620:CDS
ATGAAGTTAGTGCCAGCCGC+TGG 0.587015 3_1:+85281126 Msa0382620:CDS
TCTTTGATGACAAAAGAGAT+GGG 0.588905 3_1:+85273165 Msa0382620:CDS
CTAATGGTGTTACGGGCAAG+GGG 0.590038 3_1:+85273393 Msa0382620:CDS
CTGAGCATACTAGAACAAGA+AGG 0.593797 3_1:+85281066 Msa0382620:CDS
ATGAAAATAATTAAAGAAGA+GGG 0.593954 3_1:+85280772 Msa0382620:CDS
TTGTTCTAGTATGCTCAGAA+GGG 0.596267 3_1:-85281061 None:intergenic
CAAGCCCTCTATATAGACCC+TGG 0.597259 3_1:-85281092 None:intergenic
TGTGCGGAGGAGTGTGACTT+AGG 0.597517 3_1:-85272906 None:intergenic
GCTAAGGCTCTTCGTGTGTG+CGG 0.600801 3_1:-85272922 None:intergenic
TTCAAATTTAGGGTCTCATG+AGG 0.600906 3_1:+85273199 Msa0382620:CDS
ATATTATGAAAACTGATGGA+TGG 0.609112 3_1:+85273618 Msa0382620:CDS
GAGGATTACTATTATCCTGG+TGG 0.610245 3_1:+85273218 Msa0382620:CDS
AGAAACCATTCCATTCTCAG+AGG 0.613387 3_1:-85281325 None:intergenic
TGAGCATACTAGAACAAGAA+GGG 0.614672 3_1:+85281067 Msa0382620:CDS
TGCTTTCCGCAGAGTGTCGT+AGG 0.615525 3_1:-85280869 None:intergenic
GGCACTAACTTCATGCAACT+AGG 0.618304 3_1:-85281117 None:intergenic
AAGGCTCTTCGTGTGTGCGG+AGG 0.621792 3_1:-85272919 None:intergenic
CTAGAACAAGAAGGGATCCA+GGG 0.626781 3_1:+85281075 Msa0382620:CDS
TTGCAGAGAGGTGTTTACAA+TGG 0.627413 3_1:+85280733 Msa0382620:intron
GGATCCAGGGTCTATATAGA+GGG 0.632956 3_1:+85281088 Msa0382620:CDS
ACTTTGCCTACGACACTCTG+CGG 0.638131 3_1:+85280863 Msa0382620:CDS
GGAATAACTCCAATAAGACT+AGG 0.640014 3_1:-85280823 None:intergenic
TGAGTCCTAATAGTCTCCAA+AGG 0.641578 3_1:-85273548 None:intergenic
ACACTAGCAAACAAACCACC+AGG 0.654663 3_1:-85273233 None:intergenic
AACCAACATTCCATTCTCAG+AGG 0.668047 3_1:-85281374 None:intergenic
ATTGATAGATAACGACGAGG+AGG 0.678212 3_1:+85281185 Msa0382620:CDS
ATGCAAGTTGGAGCTCTCAG+TGG 0.678622 3_1:+85281009 Msa0382620:CDS
TAATGGTGTTACGGGCAAGG+GGG 0.685871 3_1:+85273394 Msa0382620:CDS
AGTCTCCAAAGGTGCCACAG+TGG 0.705525 3_1:-85273537 None:intergenic
AATATCCTGGAAAACATCAG+CGG 0.708839 3_1:-85273600 None:intergenic
AAACCATTCCATTCTCAGAG+GGG 0.717761 3_1:-85281323 None:intergenic
CCAACATTCCATTCTCAGAG+GGG 0.722848 3_1:-85281372 None:intergenic
GGTCCTGCAGAACTTTACAG+AGG 0.733792 3_1:+85280793 Msa0382620:CDS
TGCAATTTCTAGAACCACTG+TGG 0.742671 3_1:+85273523 Msa0382620:CDS
ACACATGAAAGAGATTCCAG+CGG 0.747929 3_1:-85281142 None:intergenic
GATATTGATAGATAACGACG+AGG 0.784110 3_1:+85281182 Msa0382620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAGAAAATATGATATTA+TGG - chr3_1:85273895-85273914 None:intergenic 15.0%
!!! TTTTTATTTTAGTCAATAAG+TGG - chr3_1:85274469-85274488 None:intergenic 15.0%
!!! ATTTTTAAAGTTTAAGAAGA+TGG - chr3_1:85277516-85277535 None:intergenic 15.0%
!!! TTTTTATTTTAGTCAATAAG+TGG - chr3_1:85274469-85274488 None:intergenic 15.0%
!!! TATTTGTTAATTATTGCTTT+TGG - chr3_1:85279490-85279509 None:intergenic 15.0%
!!! TTTTTTTTTCAACATTGAAA+GGG - chr3_1:85279557-85279576 None:intergenic 15.0%
!!! TTTTTTTTTTCAACATTGAA+AGG - chr3_1:85279558-85279577 None:intergenic 15.0%
!!! TTAATGTTTTAACATCATAT+TGG + chr3_1:85280674-85280693 Msa0382620:intron 15.0%
!! ATGAAAATAATTAAAGAAGA+GGG + chr3_1:85280772-85280791 Msa0382620:CDS 15.0%
!! ATTAATTGAATAATGATTCG+TGG - chr3_1:85272985-85273004 None:intergenic 20.0%
!!! TTTTTCTCTGTTTCAAATTT+AGG + chr3_1:85273188-85273207 Msa0382620:CDS 20.0%
!!! TTTTCTCTGTTTCAAATTTA+GGG + chr3_1:85273189-85273208 Msa0382620:CDS 20.0%
!! ATTCACTAAAAGGAAATTTA+GGG - chr3_1:85273334-85273353 None:intergenic 20.0%
!! AATTCACTAAAAGGAAATTT+AGG - chr3_1:85273335-85273354 None:intergenic 20.0%
!! TTAACGTATAATTCACTAAA+AGG - chr3_1:85273344-85273363 None:intergenic 20.0%
!! TTTGATTAGGGATTATTAAT+TGG + chr3_1:85273860-85273879 Msa0382620:intron 20.0%
!! TTGATTAGGGATTATTAATT+GGG + chr3_1:85273861-85273880 Msa0382620:intron 20.0%
!!! TCATATTTTCTAAGATTTCA+AGG + chr3_1:85273900-85273919 Msa0382620:intron 20.0%
!! TTATATCCCAAATATTCTTA+TGG + chr3_1:85273939-85273958 Msa0382620:intron 20.0%
!! CTAAAACCATAAGAATATTT+GGG - chr3_1:85273948-85273967 None:intergenic 20.0%
!!! TCTAAAACCATAAGAATATT+TGG - chr3_1:85273949-85273968 None:intergenic 20.0%
!!! GTTTTAGAACTTTTTAGAAT+TGG + chr3_1:85273961-85273980 Msa0382620:intron 20.0%
!! TGAAAAATAATATGATAGAC+AGG + chr3_1:85274286-85274305 Msa0382620:intron 20.0%
!! GAAAAATAATATGATAGACA+GGG + chr3_1:85274287-85274306 Msa0382620:intron 20.0%
!! AGAATATTGAGATATGTTAA+AGG - chr3_1:85275083-85275102 None:intergenic 20.0%
!! AGAATATTGAGATATGTTAA+AGG - chr3_1:85275083-85275102 None:intergenic 20.0%
!!! TTTCCTTTGCATATTTTTTT+TGG + chr3_1:85276062-85276081 Msa0382620:intron 20.0%
!! TGATACAAAAAACAAAACAT+GGG - chr3_1:85276731-85276750 None:intergenic 20.0%
!! ATGATACAAAAAACAAAACA+TGG - chr3_1:85276732-85276751 None:intergenic 20.0%
!! CTATGAAAAGAATAAAGTAT+AGG + chr3_1:85277597-85277616 Msa0382620:intron 20.0%
!! TTGGTCAATTATTAGAAAAA+GGG - chr3_1:85278009-85278028 None:intergenic 20.0%
!! TAGAATTGTTGAAAAAATTC+TGG - chr3_1:85278689-85278708 None:intergenic 20.0%
!! TGAAAAATAATATGATAGAC+AGG + chr3_1:85274286-85274305 Msa0382620:intron 20.0%
!! GAAAAATAATATGATAGACA+GGG + chr3_1:85274287-85274306 Msa0382620:intron 20.0%
!!! GTTTTATGATTGTCTATTAA+TGG + chr3_1:85279702-85279721 Msa0382620:intron 20.0%
!!! TCTATTAATGGATTCATTTA+CGG + chr3_1:85279714-85279733 Msa0382620:intron 20.0%
!! AGTAATTATATATACATACC+TGG - chr3_1:85280539-85280558 None:intergenic 20.0%
!! AAGCAAAATTATGTATATAC+AGG - chr3_1:85280647-85280666 None:intergenic 20.0%
!! GATGTTAAAACATTAATATG+AGG - chr3_1:85280670-85280689 None:intergenic 20.0%
!! CATGAAAATAATTAAAGAAG+AGG + chr3_1:85280771-85280790 Msa0382620:CDS 20.0%
!!! TCTCTTGTTTGAAAATTTTT+CGG - chr3_1:85280897-85280916 None:intergenic 20.0%
!!! CATACTTTTTTGATACATTT+CGG + chr3_1:85281256-85281275 Msa0382620:three_prime_UTR 20.0%
!! TCAACTTCATAAAATATGAT+TGG - chr3_1:85281514-85281533 None:intergenic 20.0%
! ATGAATTGAAATGAATGCTA+AGG - chr3_1:85272941-85272960 None:intergenic 25.0%
! TATTCAATCTAACACTAAGA+TGG - chr3_1:85273019-85273038 None:intergenic 25.0%
!!! ACAATTCAAAACCTGTTTTT+TGG + chr3_1:85273117-85273136 Msa0382620:five_prime_UTR 25.0%
! TTAAGTATATTCAATCACTC+TGG + chr3_1:85273360-85273379 Msa0382620:CDS 25.0%
! GTTAAGGTGAAGAATAAAAA+TGG + chr3_1:85273431-85273450 Msa0382620:CDS 25.0%
! TTAAGCTCAAGATTAAGATA+AGG + chr3_1:85273459-85273478 Msa0382620:CDS 25.0%
! ATATTATGAAAACTGATGGA+TGG + chr3_1:85273618-85273637 Msa0382620:CDS 25.0%
! GAAATCTTGTTAATGTCATT+CGG + chr3_1:85273657-85273676 Msa0382620:CDS 25.0%
! AAATCTTGTTAATGTCATTC+GGG + chr3_1:85273658-85273677 Msa0382620:CDS 25.0%
!!! TACTAACTGCAATTTTGATT+AGG + chr3_1:85273847-85273866 Msa0382620:intron 25.0%
!!! ACTAACTGCAATTTTGATTA+GGG + chr3_1:85273848-85273867 Msa0382620:intron 25.0%
!!! ACTTTTTAGAATTGGCAAAA+TGG + chr3_1:85273969-85273988 Msa0382620:intron 25.0%
!! ATAGTTTTTGTATTAGAGCT+AGG + chr3_1:85274014-85274033 Msa0382620:intron 25.0%
! TAACCACAAAACTTGATTTA+CGG + chr3_1:85274845-85274864 Msa0382620:intron 25.0%
! GATTTATCTTTATTCTCTAC+AGG - chr3_1:85275223-85275242 None:intergenic 25.0%
! TAACCACAAAACTTGATTTA+CGG + chr3_1:85274845-85274864 Msa0382620:intron 25.0%
! AATATTGAGAAAATTCCAGA+TGG - chr3_1:85276044-85276063 None:intergenic 25.0%
! AATGATCACTTAATGAGTAT+AGG - chr3_1:85276316-85276335 None:intergenic 25.0%
! TATTGAAAAAAGCCCTTTAT+GGG - chr3_1:85276375-85276394 None:intergenic 25.0%
! TTTACAAGAAGAGATATATG+TGG - chr3_1:85276446-85276465 None:intergenic 25.0%
! TGGCTCAATCAATAAATATA+AGG - chr3_1:85276635-85276654 None:intergenic 25.0%
! AAAAGTCATTGGAGTTAAAT+GGG - chr3_1:85276683-85276702 None:intergenic 25.0%
!! TTTAAAGTTTAAGAAGATGG+TGG - chr3_1:85277513-85277532 None:intergenic 25.0%
! GTTGGTCAATTATTAGAAAA+AGG - chr3_1:85278010-85278029 None:intergenic 25.0%
! CAAAACAGCAAAAGAAATAT+GGG - chr3_1:85278890-85278909 None:intergenic 25.0%
! TCAAAACAGCAAAAGAAATA+TGG - chr3_1:85278891-85278910 None:intergenic 25.0%
!!! ATATTTCTTTTGCTGTTTTG+AGG + chr3_1:85278890-85278909 Msa0382620:intron 25.0%
!!! TATTTCTTTTGCTGTTTTGA+GGG + chr3_1:85278891-85278910 Msa0382620:intron 25.0%
! ATACCAAATAACCAACAAAT+TGG - chr3_1:85279215-85279234 None:intergenic 25.0%
! TCTTTCTTCATAAAAGAACT+TGG - chr3_1:85279586-85279605 None:intergenic 25.0%
! TAAAACAATATACCAGAAAC+AGG - chr3_1:85279688-85279707 None:intergenic 25.0%
! TATTGATGAAAACAACTGAA+GGG - chr3_1:85279784-85279803 None:intergenic 25.0%
! ATATTGATGAAAACAACTGA+AGG - chr3_1:85279785-85279804 None:intergenic 25.0%
!! TTTAACTCTTTAGTGGTTTT+AGG + chr3_1:85280057-85280076 Msa0382620:intron 25.0%
!!! TTAACTCTTTAGTGGTTTTA+GGG + chr3_1:85280058-85280077 Msa0382620:intron 25.0%
!!! GTTCTTGTTTCTTGTTTTTT+AGG + chr3_1:85280133-85280152 Msa0382620:intron 25.0%
!!! TTGTTTCTTGTTTTTTAGGT+GGG + chr3_1:85280137-85280156 Msa0382620:intron 25.0%
!! ATAAATAACGCTTTTCTCAT+TGG - chr3_1:85280277-85280296 None:intergenic 25.0%
! TAAAGTCTTACAAGTTATGT+CGG - chr3_1:85280571-85280590 None:intergenic 25.0%
!! ACATAACTTGTAAGACTTTA+TGG + chr3_1:85280571-85280590 Msa0382620:intron 25.0%
! TATTGGAGTTATTCCATATT+CGG + chr3_1:85280831-85280850 Msa0382620:CDS 25.0%
!! ATTTTCAAACAAGAGAAGAT+CGG + chr3_1:85280901-85280920 Msa0382620:CDS 25.0%
!!! CATTTCGGTTAACTTATTTT+TGG + chr3_1:85281271-85281290 Msa0382620:three_prime_UTR 25.0%
!!! TTTGGTTTCTCTTATTTTAC+TGG + chr3_1:85281289-85281308 Msa0382620:three_prime_UTR 25.0%
!!! AATGGTTTCTCTTATTTTAC+TGG + chr3_1:85281338-85281357 Msa0382620:three_prime_UTR 25.0%
AATCTAACACTAAGATGGAA+TGG - chr3_1:85273014-85273033 None:intergenic 30.0%
!! ACAGTTTGTTTCAAGTTTGA+GGG - chr3_1:85273053-85273072 None:intergenic 30.0%
!!! AAAACCTGTTTTTTGGTTCA+TGG + chr3_1:85273124-85273143 Msa0382620:exon 30.0%
!!! AAACCTGTTTTTTGGTTCAT+GGG + chr3_1:85273125-85273144 Msa0382620:exon 30.0%
! TCTTTGATGACAAAAGAGAT+GGG + chr3_1:85273165-85273184 Msa0382620:CDS 30.0%
AAGGTGAAGAATAAAAATGG+TGG + chr3_1:85273434-85273453 Msa0382620:CDS 30.0%
AGGTGAAGAATAAAAATGGT+GGG + chr3_1:85273435-85273454 Msa0382620:CDS 30.0%
TAAGGAATCCTTCTATTAGA+AGG + chr3_1:85273477-85273496 Msa0382620:CDS 30.0%
! CATCAGTTTTCATAATATCC+TGG - chr3_1:85273616-85273635 None:intergenic 30.0%
CAGGATATTATGAAAACTGA+TGG + chr3_1:85273614-85273633 Msa0382620:CDS 30.0%
GTATCAAGTGCTATCATTAA+GGG - chr3_1:85273745-85273764 None:intergenic 30.0%
AGTATCAAGTGCTATCATTA+AGG - chr3_1:85273746-85273765 None:intergenic 30.0%
TAATGATAGCACTTGATACT+TGG + chr3_1:85273746-85273765 Msa0382620:intron 30.0%
TAAAGATCTGTCTACCATAT+CGG + chr3_1:85273812-85273831 Msa0382620:intron 30.0%
TATATCATAGACTTCCGATA+TGG - chr3_1:85273829-85273848 None:intergenic 30.0%
TTAGGGATTATTAATTGGGT+AGG + chr3_1:85273865-85273884 Msa0382620:intron 30.0%
ATAGTATGACAATTTGTCCA+TGG - chr3_1:85274148-85274167 None:intergenic 30.0%
!! AAGCAAATAGAGCTTTAGAT+TGG + chr3_1:85274174-85274193 Msa0382620:intron 30.0%
AGGTATTAACTACTAACCAA+CGG + chr3_1:85274219-85274238 Msa0382620:intron 30.0%
!! GGAGTGTTAATTATTGCTTT+TGG - chr3_1:85274538-85274557 None:intergenic 30.0%
!!! GAGTTTTTAAGGCAAAAAGT+TGG - chr3_1:85274585-85274604 None:intergenic 30.0%
! AGAAGTTTTTATTGACAACC+AGG - chr3_1:85274781-85274800 None:intergenic 30.0%
TCAGGATATTGTTTCAGTAT+AGG - chr3_1:85274957-85274976 None:intergenic 30.0%
ATTGAGATATGTTAAAGGCA+CGG - chr3_1:85275078-85275097 None:intergenic 30.0%
CTTACAGCAAATAAAATGTC+TGG + chr3_1:85275158-85275177 Msa0382620:intron 30.0%
!! GGAGTGTTAATTATTGCTTT+TGG - chr3_1:85274538-85274557 None:intergenic 30.0%
!!! GAGTTTTTAAGGCAAAAAGT+TGG - chr3_1:85274585-85274604 None:intergenic 30.0%
! AGAAGTTTTTATTGACAACC+AGG - chr3_1:85274781-85274800 None:intergenic 30.0%
TCAGGATATTGTTTCAGTAT+AGG - chr3_1:85274957-85274976 None:intergenic 30.0%
ATTGAGATATGTTAAAGGCA+CGG - chr3_1:85275078-85275097 None:intergenic 30.0%
CTTACAGCAAATAAAATGTC+TGG + chr3_1:85275158-85275177 Msa0382620:intron 30.0%
CTGCCAAAAAAAATATGCAA+AGG - chr3_1:85276068-85276087 None:intergenic 30.0%
!! GGTCTTATGACATATTTTCT+TGG - chr3_1:85276127-85276146 None:intergenic 30.0%
!!! TGCTTGTTTTAACCCATAAA+GGG + chr3_1:85276360-85276379 Msa0382620:intron 30.0%
CTATTGAAAAAAGCCCTTTA+TGG - chr3_1:85276376-85276395 None:intergenic 30.0%
!!! GTCAAATCAGCTTTTTTGAA+TGG - chr3_1:85276472-85276491 None:intergenic 30.0%
CAGATTAGACACAATTAGAT+TGG - chr3_1:85276542-85276561 None:intergenic 30.0%
CAATCTAATTGTGTCTAATC+TGG + chr3_1:85276540-85276559 Msa0382620:intron 30.0%
!! AAAGGGTATGCACAAATTTT+TGG - chr3_1:85276598-85276617 None:intergenic 30.0%
GAAAAGTCATTGGAGTTAAA+TGG - chr3_1:85276684-85276703 None:intergenic 30.0%
AAAATGGAAAAATGCAATGG+AGG - chr3_1:85276766-85276785 None:intergenic 30.0%
! TCCATTGCATTTTTCCATTT+TGG + chr3_1:85276765-85276784 Msa0382620:intron 30.0%
TCCAAAATGGAAAAATGCAA+TGG - chr3_1:85276769-85276788 None:intergenic 30.0%
TAATTCATTCAGACACAACT+CGG + chr3_1:85276893-85276912 Msa0382620:intron 30.0%
TCTAGTTATAGTCAGTGTTT+CGG + chr3_1:85277019-85277038 Msa0382620:intron 30.0%
! ACAACCAAACACTTTAAGAA+AGG + chr3_1:85277160-85277179 Msa0382620:intron 30.0%
! CTAACCTTTCTTAAAGTGTT+TGG - chr3_1:85277167-85277186 None:intergenic 30.0%
! ACTTTAAGAAAGGTTAGTGA+AGG + chr3_1:85277170-85277189 Msa0382620:intron 30.0%
!!! ATAAAACTCCTTTTGAAGCA+TGG - chr3_1:85277208-85277227 None:intergenic 30.0%
!! AGTTTTATCTTGTAAAGCCT+TGG + chr3_1:85277220-85277239 Msa0382620:intron 30.0%
! GGAATTGCCTAAACAATTTT+GGG - chr3_1:85277291-85277310 None:intergenic 30.0%
! AGGAATTGCCTAAACAATTT+TGG - chr3_1:85277292-85277311 None:intergenic 30.0%
! AAATAGATCAGTAATGGAGA+TGG - chr3_1:85277336-85277355 None:intergenic 30.0%
AAGGAGAAATAGATCAGTAA+TGG - chr3_1:85277342-85277361 None:intergenic 30.0%
AACAAAATGGAGTTAGTGAA+AGG - chr3_1:85277361-85277380 None:intergenic 30.0%
! TTCACTAACTCCATTTTGTT+CGG + chr3_1:85277361-85277380 Msa0382620:intron 30.0%
!!! AATTTATTTTGCGAAGAAGC+TGG - chr3_1:85277419-85277438 None:intergenic 30.0%
!! CAATTTCTAAGGTCTGATAA+TGG - chr3_1:85277467-85277486 None:intergenic 30.0%
AGACCTTAGAAATTGAATCT+TGG + chr3_1:85277472-85277491 Msa0382620:intron 30.0%
!! AATGAGTTGAAGCTTTTTAG+TGG + chr3_1:85277667-85277686 Msa0382620:intron 30.0%
!!! TTCTGTTTTGTTTACCAAAC+TGG + chr3_1:85277717-85277736 Msa0382620:intron 30.0%
!! AGCAGATTTTGATCAATATC+AGG + chr3_1:85278034-85278053 Msa0382620:intron 30.0%
TATATTCCTGCAAAAGGAAA+AGG - chr3_1:85278118-85278137 None:intergenic 30.0%
CATATCTCAAAAGTCAGAAT+TGG - chr3_1:85278151-85278170 None:intergenic 30.0%
!! TGGCTTTAAATCTTTGAAGA+TGG + chr3_1:85278174-85278193 Msa0382620:intron 30.0%
!!! TGGTTTTATCATATGTCATG+TGG + chr3_1:85278194-85278213 Msa0382620:intron 30.0%
TGAAGAAGATCAAATGTTTG+TGG - chr3_1:85278281-85278300 None:intergenic 30.0%
! TTTTACCTCTATCTTTGCTT+TGG + chr3_1:85278473-85278492 Msa0382620:intron 30.0%
TTTCTATTGCAAACAAGGTT+AGG - chr3_1:85278738-85278757 None:intergenic 30.0%
ATTGCTTTCTATTGCAAACA+AGG - chr3_1:85278743-85278762 None:intergenic 30.0%
AGAAATATGGGACTATTTGA+AGG - chr3_1:85278878-85278897 None:intergenic 30.0%
! GAAAACATTTTGTGAAACAC+AGG + chr3_1:85278927-85278946 Msa0382620:intron 30.0%
AACTTCATAATCCTCTTCAA+CGG + chr3_1:85279041-85279060 Msa0382620:intron 30.0%
AATGAAACAGAAACTCAAGT+CGG - chr3_1:85279519-85279538 None:intergenic 30.0%
! TGAGTTTCTGTTTCATTTTC+TGG + chr3_1:85279522-85279541 Msa0382620:intron 30.0%
!!! TGTTTTGCATATTTTGACCA+TGG + chr3_1:85279922-85279941 Msa0382620:intron 30.0%
ATAAAACCAACTATCTGTCA+TGG - chr3_1:85279969-85279988 None:intergenic 30.0%
ACCACTAAAGAGTTAAAAGA+GGG - chr3_1:85280054-85280073 None:intergenic 30.0%
AACCACTAAAGAGTTAAAAG+AGG - chr3_1:85280055-85280074 None:intergenic 30.0%
!!! CTTGTTTCTTGTTTTTTAGG+TGG + chr3_1:85280136-85280155 Msa0382620:intron 30.0%
!!! TGTTTCTTGTTTTTTAGGTG+GGG + chr3_1:85280138-85280157 Msa0382620:intron 30.0%
! AAAGCGTTATTTATCTACTC+TGG + chr3_1:85280283-85280302 Msa0382620:intron 30.0%
AAGCAAATAGCTGTAGAAAT+AGG - chr3_1:85280368-85280387 None:intergenic 30.0%
ACAGCTATTTGCTTATGATA+CGG + chr3_1:85280374-85280393 Msa0382620:intron 30.0%
!!! AACTTTGAAACCCTTTTGAT+TGG + chr3_1:85280925-85280944 Msa0382620:CDS 30.0%
! CTTTGTAATCCTGTTCTTTT+TGG + chr3_1:85281467-85281486 Msa0382620:three_prime_UTR 30.0%
AGTCAATTTCCAAAAAGAAC+AGG - chr3_1:85281479-85281498 None:intergenic 30.0%
!! GACAGTTTGTTTCAAGTTTG+AGG - chr3_1:85273054-85273073 None:intergenic 35.0%
! CTCTTTTGTCATCAAAGAGT+TGG - chr3_1:85273163-85273182 None:intergenic 35.0%
! CTCTTTGATGACAAAAGAGA+TGG + chr3_1:85273164-85273183 Msa0382620:CDS 35.0%
! TTCAAATTTAGGGTCTCATG+AGG + chr3_1:85273199-85273218 Msa0382620:CDS 35.0%
CATGAGGATTACTATTATCC+TGG + chr3_1:85273215-85273234 Msa0382620:CDS 35.0%
GAATTAGAATCAGAAGGGTT+TGG - chr3_1:85273293-85273312 None:intergenic 35.0%
GATTCTAATTCCCCTGAAAA+TGG + chr3_1:85273302-85273321 Msa0382620:CDS 35.0%
! ATTTGAGCCTAATGGTGTTA+CGG + chr3_1:85273385-85273404 Msa0382620:CDS 35.0%
CTACACAACCTTCTAATAGA+AGG - chr3_1:85273488-85273507 None:intergenic 35.0%
TCTATTAGAAGGTTGTGTAG+TGG + chr3_1:85273488-85273507 Msa0382620:CDS 35.0%
GACTATTAGGACTCATTTGA+TGG + chr3_1:85273556-85273575 Msa0382620:CDS 35.0%
TATTAGGACTCATTTGATGG+TGG + chr3_1:85273559-85273578 Msa0382620:CDS 35.0%
! ATTAGGACTCATTTGATGGT+GGG + chr3_1:85273560-85273579 Msa0382620:CDS 35.0%
AATATCCTGGAAAACATCAG+CGG - chr3_1:85273603-85273622 None:intergenic 35.0%
! TATGAAAACTGATGGATGGA+AGG + chr3_1:85273622-85273641 Msa0382620:CDS 35.0%
! ATGAAAACTGATGGATGGAA+GGG + chr3_1:85273623-85273642 Msa0382620:CDS 35.0%
!! TGATACTTGGTTGTTTTCAG+TGG + chr3_1:85273759-85273778 Msa0382620:intron 35.0%
!!! TGGTGTTTTGATAATGTTGC+TGG + chr3_1:85273779-85273798 Msa0382620:intron 35.0%
ACAAAAACTATACCGAGCAT+TGG - chr3_1:85274005-85274024 None:intergenic 35.0%
ACAAAATTGTGTGGTTAAGC+AGG + chr3_1:85274037-85274056 Msa0382620:intron 35.0%
CAACCATCTCTATATCTACA+AGG - chr3_1:85274083-85274102 None:intergenic 35.0%
GGTATTAACTACTAACCAAC+GGG + chr3_1:85274220-85274239 Msa0382620:intron 35.0%
! AAGAGTACGTTGAAATGGAA+TGG + chr3_1:85274310-85274329 Msa0382620:intron 35.0%
AGAGTACGTTGAAATGGAAT+GGG + chr3_1:85274311-85274330 Msa0382620:intron 35.0%
AACTACATCACCACTAAACT+AGG + chr3_1:85274401-85274420 Msa0382620:intron 35.0%
ATAAGTGGTACCTACACTTT+AGG - chr3_1:85274454-85274473 None:intergenic 35.0%
!! TCAGCAAGTTCGAGTTTTTA+AGG - chr3_1:85274596-85274615 None:intergenic 35.0%
! TTTGGTTTATTGCAAGTCAG+AGG - chr3_1:85274655-85274674 None:intergenic 35.0%
TTAAGAGAGATGCAGCAAAA+TGG - chr3_1:85274687-85274706 None:intergenic 35.0%
TATTGTTTCAGTATAGGCTC+TGG - chr3_1:85274951-85274970 None:intergenic 35.0%
TGTCAAAATTTCAAGCTGTG+TGG - chr3_1:85275029-85275048 None:intergenic 35.0%
!! TCAGCAAGTTCGAGTTTTTA+AGG - chr3_1:85274596-85274615 None:intergenic 35.0%
! TTTGGTTTATTGCAAGTCAG+AGG - chr3_1:85274655-85274674 None:intergenic 35.0%
TTAAGAGAGATGCAGCAAAA+TGG - chr3_1:85274687-85274706 None:intergenic 35.0%
TATTGTTTCAGTATAGGCTC+TGG - chr3_1:85274951-85274970 None:intergenic 35.0%
TGTCAAAATTTCAAGCTGTG+TGG - chr3_1:85275029-85275048 None:intergenic 35.0%
!!! AACTTCTCCTTTTGGTTCAT+TGG + chr3_1:85275995-85276014 Msa0382620:intron 35.0%
ATTGAGAAAATTCCAGATGG+AGG - chr3_1:85276041-85276060 None:intergenic 35.0%
! GCATTTGAAATGACAGATCT+TGG - chr3_1:85276148-85276167 None:intergenic 35.0%
!!! GTTGATGATCTTTTAGTGAC+CGG - chr3_1:85276217-85276236 None:intergenic 35.0%
!!! GTGCTTGTTTTAACCCATAA+AGG + chr3_1:85276359-85276378 Msa0382620:intron 35.0%
!! AAGCTGATTTGACATCTAAC+TGG + chr3_1:85276479-85276498 Msa0382620:intron 35.0%
ATTGTGTCTAATCTGGATAC+AGG + chr3_1:85276547-85276566 Msa0382620:intron 35.0%
AGAACAAAGCTCAATGTTGA+TGG - chr3_1:85276655-85276674 None:intergenic 35.0%
CCTCAAGATAGAAAAGTCAT+TGG - chr3_1:85276694-85276713 None:intergenic 35.0%
! CCAATGACTTTTCTATCTTG+AGG + chr3_1:85276691-85276710 Msa0382620:intron 35.0%
AAAAAACAAAACATGGGAGC+TGG - chr3_1:85276725-85276744 None:intergenic 35.0%
AAGCACGAAAAGATCCAAAA+TGG - chr3_1:85276782-85276801 None:intergenic 35.0%
! CTTAGAGATCCAGATGTTTT+CGG + chr3_1:85276951-85276970 Msa0382620:intron 35.0%
AAGAATCTACCGAAAACATC+TGG - chr3_1:85276963-85276982 None:intergenic 35.0%
!! ACTTGACAAAAAAGCACTTC+CGG - chr3_1:85277102-85277121 None:intergenic 35.0%
!! TTGTTTTGCACATGTTCCAA+AGG - chr3_1:85277138-85277157 None:intergenic 35.0%
TACTCATACCATGCTTCAAA+AGG + chr3_1:85277197-85277216 Msa0382620:intron 35.0%
TTATCTTGTAAAGCCTTGGT+TGG + chr3_1:85277224-85277243 Msa0382620:intron 35.0%
! TAAACAATTTTGGGCAGAAG+CGG - chr3_1:85277282-85277301 None:intergenic 35.0%
TAGATGTATGTTGCATGAGA+AGG - chr3_1:85277312-85277331 None:intergenic 35.0%
! TCACTAACTCCATTTTGTTC+GGG + chr3_1:85277362-85277381 Msa0382620:intron 35.0%
GCTCCAAGATTCAATTTCTA+AGG - chr3_1:85277478-85277497 None:intergenic 35.0%
CTTGAAATTCAAGCATGAAG+TGG - chr3_1:85277546-85277565 None:intergenic 35.0%
ACGACTTTACAAGAATGTGT+TGG - chr3_1:85277577-85277596 None:intergenic 35.0%
TATAGGCTACCTTGTATTGA+TGG + chr3_1:85277614-85277633 Msa0382620:intron 35.0%
CAAAGAACTCCATCAATACA+AGG - chr3_1:85277626-85277645 None:intergenic 35.0%
! TGTATTGATGGAGTTCTTTG+AGG + chr3_1:85277626-85277645 Msa0382620:intron 35.0%
TTCCATTTCCCAAAACTGTT+TGG - chr3_1:85277697-85277716 None:intergenic 35.0%
AAGAAGAAAGACATGTCAAG+AGG - chr3_1:85277785-85277804 None:intergenic 35.0%
!! ACTGACTTGAGTGAAATAAG+CGG + chr3_1:85277865-85277884 Msa0382620:intron 35.0%
CTTCTCATTTGATCCAATTG+AGG - chr3_1:85277900-85277919 None:intergenic 35.0%
ATTCTTAGGGTCAAAATGAG+AGG - chr3_1:85277929-85277948 None:intergenic 35.0%
GATCAAAATCTGCTAAGTGT+TGG - chr3_1:85278028-85278047 None:intergenic 35.0%
ATCGTAATTTCAACGAGTTC+AGG - chr3_1:85278091-85278110 None:intergenic 35.0%
TGAACTCGTTGAAATTACGA+TGG + chr3_1:85278090-85278109 Msa0382620:intron 35.0%
TCAAAAGTCAGAATTGGCAA+CGG - chr3_1:85278145-85278164 None:intergenic 35.0%
!!! CTGACTTTTGAGATATGAGT+TGG + chr3_1:85278154-85278173 Msa0382620:intron 35.0%
ATTGATGCTTCATATCTCTC+AGG + chr3_1:85278655-85278674 Msa0382620:intron 35.0%
ATTTGAAGGAAGAATACGCA+GGG - chr3_1:85278864-85278883 None:intergenic 35.0%
TATTTGAAGGAAGAATACGC+AGG - chr3_1:85278865-85278884 None:intergenic 35.0%
!!! TGTTTTGAGGGTCATAATTC+TGG + chr3_1:85278903-85278922 Msa0382620:intron 35.0%
ATCACAAGGAGAGAAAAACT+CGG - chr3_1:85278981-85279000 None:intergenic 35.0%
GGCTCAGTTAAAATATCACA+AGG - chr3_1:85278995-85279014 None:intergenic 35.0%
!!! GTGATATTTTAACTGAGCCA+TGG + chr3_1:85278996-85279015 Msa0382620:intron 35.0%
!!! TATTTTAACTGAGCCATGGT+AGG + chr3_1:85279000-85279019 Msa0382620:intron 35.0%
! GTTTCAGTTTCCATTTTCAC+AGG + chr3_1:85279165-85279184 Msa0382620:intron 35.0%
!! GTGCCAATTTGTTGGTTATT+TGG + chr3_1:85279209-85279228 Msa0382620:intron 35.0%
! AAGAGTACGTTGAAATGGAA+TGG + chr3_1:85274310-85274329 Msa0382620:intron 35.0%
AGAGTACGTTGAAATGGAAT+GGG + chr3_1:85274311-85274330 Msa0382620:intron 35.0%
AACTACATCACCACTAAACT+AGG + chr3_1:85274401-85274420 Msa0382620:intron 35.0%
ATAAGTGGTACCTACACTTT+AGG - chr3_1:85274454-85274473 None:intergenic 35.0%
GAAGGAAAATCAGCAAATGA+TGG - chr3_1:85279662-85279681 None:intergenic 35.0%
! TTTTCCTTCAAACCTGTTTC+TGG + chr3_1:85279673-85279692 Msa0382620:intron 35.0%
TATACCAGAAACAGGTTTGA+AGG - chr3_1:85279680-85279699 None:intergenic 35.0%
TCACTAACACATACAGGTAA+GGG - chr3_1:85279884-85279903 None:intergenic 35.0%
!!! GTTTCTTGTTTTTTAGGTGG+GGG + chr3_1:85280139-85280158 Msa0382620:intron 35.0%
GGGGGTCTTAAATGTATAAA+TGG + chr3_1:85280157-85280176 Msa0382620:intron 35.0%
AAATGTATAAATGGCCCATC+AGG + chr3_1:85280166-85280185 Msa0382620:intron 35.0%
TGATTAGTGATATTGCAGAG+AGG + chr3_1:85280721-85280740 Msa0382620:intron 35.0%
! TTATTTTCATGAACGCGTCA+AGG - chr3_1:85280762-85280781 None:intergenic 35.0%
GGAATAACTCCAATAAGACT+AGG - chr3_1:85280826-85280845 None:intergenic 35.0%
! AAGTAATTGGTAGCCGAATA+TGG - chr3_1:85280847-85280866 None:intergenic 35.0%
AAGACAGGTCTACAAAAATG+TGG + chr3_1:85281032-85281051 Msa0382620:CDS 35.0%
TTGTTCTAGTATGCTCAGAA+GGG - chr3_1:85281064-85281083 None:intergenic 35.0%
TGAGCATACTAGAACAAGAA+GGG + chr3_1:85281067-85281086 Msa0382620:CDS 35.0%
GATATTGATAGATAACGACG+AGG + chr3_1:85281182-85281201 Msa0382620:CDS 35.0%
ACAGCAACACTGCACAAAAA+GGG + chr3_1:85272875-85272894 Msa0382620:five_prime_UTR 40.0%
TGTCACTCTGTGCTAAGAAA+AGG + chr3_1:85273070-85273089 Msa0382620:five_prime_UTR 40.0%
CTACCCATGAACCAAAAAAC+AGG - chr3_1:85273131-85273150 None:intergenic 40.0%
!!! CTGTTTTTTGGTTCATGGGT+AGG + chr3_1:85273129-85273148 Msa0382620:exon 40.0%
GAGGATTACTATTATCCTGG+TGG + chr3_1:85273218-85273237 Msa0382620:CDS 40.0%
!! TTTGCTAGTGTTGGTCAAGT+GGG + chr3_1:85273245-85273264 Msa0382620:CDS 40.0%
CAGGGGAATTAGAATCAGAA+GGG - chr3_1:85273298-85273317 None:intergenic 40.0%
TCAGGGGAATTAGAATCAGA+AGG - chr3_1:85273299-85273318 None:intergenic 40.0%
! TAGGGTCATCACCATTTTCA+GGG - chr3_1:85273316-85273335 None:intergenic 40.0%
! TTAGGGTCATCACCATTTTC+AGG - chr3_1:85273317-85273336 None:intergenic 40.0%
! CTCTGGAAATTTGAGCCTAA+TGG + chr3_1:85273377-85273396 Msa0382620:CDS 40.0%
!! TTTGAGCCTAATGGTGTTAC+GGG + chr3_1:85273386-85273405 Msa0382620:CDS 40.0%
GGAAGGTGAACAAGTTGTTA+AGG + chr3_1:85273415-85273434 Msa0382620:CDS 40.0%
!! TGCAATTTCTAGAACCACTG+TGG + chr3_1:85273523-85273542 Msa0382620:CDS 40.0%
TGAGTCCTAATAGTCTCCAA+AGG - chr3_1:85273551-85273570 None:intergenic 40.0%
! ATGGATGGAAGGGTTTGTTT+AGG + chr3_1:85273633-85273652 Msa0382620:CDS 40.0%
! TGGATGGAAGGGTTTGTTTA+GGG + chr3_1:85273634-85273653 Msa0382620:CDS 40.0%
! ATTACCTCAATAGCCTTGCT+AGG - chr3_1:85273689-85273708 None:intergenic 40.0%
GGATTTAATGCACCAATGCT+CGG + chr3_1:85273990-85274009 Msa0382620:intron 40.0%
AGAGCTAGGACAAAATTGTG+TGG + chr3_1:85274028-85274047 Msa0382620:intron 40.0%
CCATCTCTATATCTACAAGG+AGG - chr3_1:85274080-85274099 None:intergenic 40.0%
CCTCCTTGTAGATATAGAGA+TGG + chr3_1:85274077-85274096 Msa0382620:intron 40.0%
TACCTTTGAGTCAGAGAACT+GGG - chr3_1:85274204-85274223 None:intergenic 40.0%
ATACCTTTGAGTCAGAGAAC+TGG - chr3_1:85274205-85274224 None:intergenic 40.0%
AAAATTGGCGGGAATAGTGT+TGG + chr3_1:85274249-85274268 Msa0382620:intron 40.0%
!! CGGGAATAGTGTTGGTTATT+TGG + chr3_1:85274257-85274276 Msa0382620:intron 40.0%
ACTGCTTTCTCCTAAAGTGT+AGG + chr3_1:85274441-85274460 Msa0382620:intron 40.0%
TTAACACTCCTCCTTGCTTT+AGG + chr3_1:85274548-85274567 Msa0382620:intron 40.0%
AGTTTGCAGATCCTAAAGCA+AGG - chr3_1:85274562-85274581 None:intergenic 40.0%
!! AAAAACTCGAACTTGCTGAC+AGG + chr3_1:85274597-85274616 Msa0382620:intron 40.0%
GCAAAATGGAGAAGTGACTT+TGG - chr3_1:85274673-85274692 None:intergenic 40.0%
GGCAGCAATTGCAATTTCAA+AGG - chr3_1:85274760-85274779 None:intergenic 40.0%
TTGAAATTGCAATTGCTGCC+TGG + chr3_1:85274760-85274779 Msa0382620:intron 40.0%
! CAGCCGTAAATCAAGTTTTG+TGG - chr3_1:85274851-85274870 None:intergenic 40.0%
!!! TAGGCTCTGGAGTTTTTTCA+TGG - chr3_1:85274938-85274957 None:intergenic 40.0%
! TGGATTCTCTGATAGTGACT+GGG - chr3_1:85275009-85275028 None:intergenic 40.0%
! GTTAAAGGCACGGTTGATTA+TGG - chr3_1:85275068-85275087 None:intergenic 40.0%
ATTCTCTACAGGAGTCTGAT+CGG - chr3_1:85275212-85275231 None:intergenic 40.0%
TTAACACTCCTCCTTGCTTT+AGG + chr3_1:85274548-85274567 Msa0382620:intron 40.0%
AGTTTGCAGATCCTAAAGCA+AGG - chr3_1:85274562-85274581 None:intergenic 40.0%
!! AAAAACTCGAACTTGCTGAC+AGG + chr3_1:85274597-85274616 Msa0382620:intron 40.0%
GCAAAATGGAGAAGTGACTT+TGG - chr3_1:85274673-85274692 None:intergenic 40.0%
GGCAGCAATTGCAATTTCAA+AGG - chr3_1:85274760-85274779 None:intergenic 40.0%
TTGAAATTGCAATTGCTGCC+TGG + chr3_1:85274760-85274779 Msa0382620:intron 40.0%
! CAGCCGTAAATCAAGTTTTG+TGG - chr3_1:85274851-85274870 None:intergenic 40.0%
!!! TAGGCTCTGGAGTTTTTTCA+TGG - chr3_1:85274938-85274957 None:intergenic 40.0%
! TGGATTCTCTGATAGTGACT+GGG - chr3_1:85275009-85275028 None:intergenic 40.0%
! GTTAAAGGCACGGTTGATTA+TGG - chr3_1:85275068-85275087 None:intergenic 40.0%
AAGTTGACGAAGGATACTAC+AGG - chr3_1:85275952-85275971 None:intergenic 40.0%
TAGCACACCAATGAACCAAA+AGG - chr3_1:85276005-85276024 None:intergenic 40.0%
AACCAACCTTGTATCATCTC+CGG + chr3_1:85276195-85276214 Msa0382620:intron 40.0%
ACTCTTTACGTGAAACATGC+AGG - chr3_1:85276268-85276287 None:intergenic 40.0%
TGCATGTTTCACGTAAAGAG+TGG + chr3_1:85276267-85276286 Msa0382620:intron 40.0%
TGGGTTAAAACAAGCACCAA+GGG - chr3_1:85276356-85276375 None:intergenic 40.0%
! ATGGGTTAAAACAAGCACCA+AGG - chr3_1:85276357-85276376 None:intergenic 40.0%
ATACCCTTTAACTACGAGTC+TGG + chr3_1:85276609-85276628 Msa0382620:intron 40.0%
ATGGAAAAATGCAATGGAGG+AGG - chr3_1:85276763-85276782 None:intergenic 40.0%
!! AACTCGGTTGTTTGCTTTTC+AGG + chr3_1:85276909-85276928 Msa0382620:intron 40.0%
TTTCAACGAAGACCAGCAAT+GGG - chr3_1:85276991-85277010 None:intergenic 40.0%
ATTTCAACGAAGACCAGCAA+TGG - chr3_1:85276992-85277011 None:intergenic 40.0%
! ATAGTCAGTGTTTCGGTTTG+AGG + chr3_1:85277026-85277045 Msa0382620:intron 40.0%
GGGATACAGTTCACTTTCAA+AGG - chr3_1:85277069-85277088 None:intergenic 40.0%
!! CTTGACAAAAAAGCACTTCC+GGG - chr3_1:85277101-85277120 None:intergenic 40.0%
AGTTTGTCACGCTTAACCTT+TGG + chr3_1:85277119-85277138 Msa0382620:intron 40.0%
! TCAAAATCGACTTCCAACCA+AGG - chr3_1:85277240-85277259 None:intergenic 40.0%
GCTTCTGCCCAAAATTGTTT+AGG + chr3_1:85277281-85277300 Msa0382620:intron 40.0%
!! TCTAAGGTCTGATAATGGCA+AGG - chr3_1:85277462-85277481 None:intergenic 40.0%
!! AAGATGGTGGAAACTCAAAG+TGG - chr3_1:85277500-85277519 None:intergenic 40.0%
AAATTCAAGCATGAAGTGGC+TGG - chr3_1:85277542-85277561 None:intergenic 40.0%
!!! CTCCAAACAGTTTTGGGAAA+TGG + chr3_1:85277692-85277711 Msa0382620:intron 40.0%
! GGCAAATGATCAGAAAGTAC+CGG + chr3_1:85277755-85277774 Msa0382620:intron 40.0%
CTCATTTGATCCAATTGAGG+AGG - chr3_1:85277897-85277916 None:intergenic 40.0%
TCATCTTTGACATCACTGGT+CGG - chr3_1:85277955-85277974 None:intergenic 40.0%
TGTCTCATCTTTGACATCAC+TGG - chr3_1:85277959-85277978 None:intergenic 40.0%
! ATGGTTCCTTTTCCTTTTGC+AGG + chr3_1:85278109-85278128 Msa0382620:intron 40.0%
GGTGTCTATATTCCTGCAAA+AGG - chr3_1:85278124-85278143 None:intergenic 40.0%
CTAAGAGTAGTTCAGAATGC+TGG - chr3_1:85278243-85278262 None:intergenic 40.0%
TTCATCTTGCTCTACAACCT+GGG + chr3_1:85278297-85278316 Msa0382620:intron 40.0%
ACTTCCAACTACATGATGCT+TGG + chr3_1:85278507-85278526 Msa0382620:intron 40.0%
! CAAGTCTTTTGTGTTCTCCA+AGG + chr3_1:85278627-85278646 Msa0382620:intron 40.0%
! TGAAGCATCAATAACCACCT+TGG - chr3_1:85278647-85278666 None:intergenic 40.0%
GCAAACAAGGTTAGGTTACT+CGG - chr3_1:85278730-85278749 None:intergenic 40.0%
!! GCAAGTACTGAACTTGATGA+GGG - chr3_1:85278821-85278840 None:intergenic 40.0%
!! TGCAAGTACTGAACTTGATG+AGG - chr3_1:85278822-85278841 None:intergenic 40.0%
TTTGAAGGAAGAATACGCAG+GGG - chr3_1:85278863-85278882 None:intergenic 40.0%
GAGAAAAACTCGGAAAGCAA+AGG - chr3_1:85278971-85278990 None:intergenic 40.0%
ATGGTAGGATTATTCTGCAG+CGG + chr3_1:85279015-85279034 Msa0382620:intron 40.0%
AGTAAGAATGGAGTCTTACC+TGG - chr3_1:85279088-85279107 None:intergenic 40.0%
ACTGCTTTCTCCTAAAGTGT+AGG + chr3_1:85274441-85274460 Msa0382620:intron 40.0%
TGAAGGGTAATCTAGTGCAA+GGG - chr3_1:85279768-85279787 None:intergenic 40.0%
GTCACTAACACATACAGGTA+AGG - chr3_1:85279885-85279904 None:intergenic 40.0%
! AGTGTGTCACTAACACATAC+AGG - chr3_1:85279890-85279909 None:intergenic 40.0%
AAAGAGTTAAAAGAGGGCCA+GGG - chr3_1:85280048-85280067 None:intergenic 40.0%
TAAAGAGTTAAAAGAGGGCC+AGG - chr3_1:85280049-85280068 None:intergenic 40.0%
!! GCCCTCTTTTAACTCTTTAG+TGG + chr3_1:85280050-85280069 Msa0382620:intron 40.0%
!! TGCTCATTGACTTACCTGAT+GGG - chr3_1:85280183-85280202 None:intergenic 40.0%
!! TTGCTCATTGACTTACCTGA+TGG - chr3_1:85280184-85280203 None:intergenic 40.0%
CAATCAATGATGCAGGAACT+GGG - chr3_1:85280443-85280462 None:intergenic 40.0%
!! CTAGTCTTGAGTAGTTCAAG+CGG - chr3_1:85280507-85280526 None:intergenic 40.0%
CAAGACTAGACTAACTATCC+AGG + chr3_1:85280518-85280537 Msa0382620:intron 40.0%
!! TTGCAGAGAGGTGTTTACAA+TGG + chr3_1:85280733-85280752 Msa0382620:intron 40.0%
AGTGTCGTAGGCAAAGTAAT+TGG - chr3_1:85280860-85280879 None:intergenic 40.0%
!! AACCCTTTTGATTGGTTCAG+CGG + chr3_1:85280933-85280952 Msa0382620:CDS 40.0%
! TACTGCAACTTTTCCACTTG+AGG + chr3_1:85280972-85280991 Msa0382620:CDS 40.0%
CTTGTTCTAGTATGCTCAGA+AGG - chr3_1:85281065-85281084 None:intergenic 40.0%
CTGAGCATACTAGAACAAGA+AGG + chr3_1:85281066-85281085 Msa0382620:CDS 40.0%
ACACATGAAAGAGATTCCAG+CGG - chr3_1:85281145-85281164 None:intergenic 40.0%
ATTGATAGATAACGACGAGG+AGG + chr3_1:85281185-85281204 Msa0382620:CDS 40.0%
!! TTTTTCAACCCCTCTGAGAA+TGG + chr3_1:85281315-85281334 Msa0382620:three_prime_UTR 40.0%
AAACCATTCCATTCTCAGAG+GGG - chr3_1:85281326-85281345 None:intergenic 40.0%
GAAACCATTCCATTCTCAGA+GGG - chr3_1:85281327-85281346 None:intergenic 40.0%
AGAAACCATTCCATTCTCAG+AGG - chr3_1:85281328-85281347 None:intergenic 40.0%
!! TTTTTCAACCCCTCTGAGAA+TGG + chr3_1:85281315-85281334 Msa0382620:three_prime_UTR 40.0%
ACCAACATTCCATTCTCAGA+GGG - chr3_1:85281376-85281395 None:intergenic 40.0%
AACCAACATTCCATTCTCAG+AGG - chr3_1:85281377-85281396 None:intergenic 40.0%
TGTTTATTTACGTTGCTGCC+AGG + chr3_1:85281400-85281419 Msa0382620:three_prime_UTR 40.0%
CACAGCAACACTGCACAAAA+AGG + chr3_1:85272874-85272893 Msa0382620:five_prime_UTR 45.0%
CAGCAACACTGCACAAAAAG+GGG + chr3_1:85272876-85272895 Msa0382620:five_prime_UTR 45.0%
AGCAACACTGCACAAAAAGG+GGG + chr3_1:85272877-85272896 Msa0382620:five_prime_UTR 45.0%
ACACTAGCAAACAAACCACC+AGG - chr3_1:85273236-85273255 None:intergenic 45.0%
!! GGTGGTTTGTTTGCTAGTGT+TGG + chr3_1:85273236-85273255 Msa0382620:CDS 45.0%
!! GTTTGCTAGTGTTGGTCAAG+TGG + chr3_1:85273244-85273263 Msa0382620:CDS 45.0%
!! AGTGTTGGTCAAGTGGGAAT+AGG + chr3_1:85273251-85273270 Msa0382620:CDS 45.0%
! GTGTTGGTCAAGTGGGAATA+GGG + chr3_1:85273252-85273271 Msa0382620:CDS 45.0%
! GAATCAGAAGGGTTTGGTTG+TGG - chr3_1:85273287-85273306 None:intergenic 45.0%
! AGGGTCATCACCATTTTCAG+GGG - chr3_1:85273315-85273334 None:intergenic 45.0%
! TTGTGTAGTGGAGCAATTGC+TGG + chr3_1:85273500-85273519 Msa0382620:CDS 45.0%
! TGGCACCTTTGGAGACTATT+AGG + chr3_1:85273543-85273562 Msa0382620:CDS 45.0%
!! CATTTGATGGTGGGAAGTAG+TGG + chr3_1:85273569-85273588 Msa0382620:CDS 45.0%
! TTCTACCGCTGATGTTTTCC+AGG + chr3_1:85273595-85273614 Msa0382620:CDS 45.0%
! GGATGGAAGGGTTTGTTTAG+GGG + chr3_1:85273635-85273654 Msa0382620:CDS 45.0%
! GTGGTTAAGCAGGTTTTGCT+AGG + chr3_1:85274047-85274066 Msa0382620:intron 45.0%
ACCAACGGGACTGTCAAAAT+TGG + chr3_1:85274234-85274253 Msa0382620:intron 45.0%
AACGGGACTGTCAAAATTGG+CGG + chr3_1:85274237-85274256 Msa0382620:intron 45.0%
! CAGGGAAGAGTACGTTGAAA+TGG + chr3_1:85274305-85274324 Msa0382620:intron 45.0%
TCACCACTAAACTAGGAACG+TGG + chr3_1:85274408-85274427 Msa0382620:intron 45.0%
CACCACTAAACTAGGAACGT+GGG + chr3_1:85274409-85274428 Msa0382620:intron 45.0%
ATCCCACGTTCCTAGTTTAG+TGG - chr3_1:85274414-85274433 None:intergenic 45.0%
! TGCTTTTGGACTGCATTACG+TGG - chr3_1:85274524-85274543 None:intergenic 45.0%
TTGCAGATCCTAAAGCAAGG+AGG - chr3_1:85274559-85274578 None:intergenic 45.0%
! TTAGTCTTCCCATGACACAC+TGG + chr3_1:85274732-85274751 Msa0382620:intron 45.0%
CAAAGGATCCAGTGTGTCAT+GGG - chr3_1:85274743-85274762 None:intergenic 45.0%
TCAAAGGATCCAGTGTGTCA+TGG - chr3_1:85274744-85274763 None:intergenic 45.0%
TATGAACTCAGCTTCTGCAG+TGG + chr3_1:85274881-85274900 Msa0382620:intron 45.0%
TTCATGGTGCACAAAGAAGC+AGG - chr3_1:85274922-85274941 None:intergenic 45.0%
!! GATGACATGAAGAGCACTTC+AGG - chr3_1:85274975-85274994 None:intergenic 45.0%
! GTGGATTCTCTGATAGTGAC+TGG - chr3_1:85275010-85275029 None:intergenic 45.0%
CACAATGCATAAAGCGAGAG+AGG + chr3_1:85275132-85275151 Msa0382620:intron 45.0%
! TGCTTTTGGACTGCATTACG+TGG - chr3_1:85274524-85274543 None:intergenic 45.0%
TTGCAGATCCTAAAGCAAGG+AGG - chr3_1:85274559-85274578 None:intergenic 45.0%
! TTAGTCTTCCCATGACACAC+TGG + chr3_1:85274732-85274751 Msa0382620:intron 45.0%
CAAAGGATCCAGTGTGTCAT+GGG - chr3_1:85274743-85274762 None:intergenic 45.0%
TCAAAGGATCCAGTGTGTCA+TGG - chr3_1:85274744-85274763 None:intergenic 45.0%
TATGAACTCAGCTTCTGCAG+TGG + chr3_1:85274881-85274900 Msa0382620:intron 45.0%
TTCATGGTGCACAAAGAAGC+AGG - chr3_1:85274922-85274941 None:intergenic 45.0%
!! GATGACATGAAGAGCACTTC+AGG - chr3_1:85274975-85274994 None:intergenic 45.0%
! GTGGATTCTCTGATAGTGAC+TGG - chr3_1:85275010-85275029 None:intergenic 45.0%
CACAATGCATAAAGCGAGAG+AGG + chr3_1:85275132-85275151 Msa0382620:intron 45.0%
GGATACTACAGGAGTCTGAT+CGG - chr3_1:85275941-85275960 None:intergenic 45.0%
!! GGTGCTGATAAAGTTGACGA+AGG - chr3_1:85275962-85275981 None:intergenic 45.0%
GAGAAGTTGAGCAAGGAAGA+TGG - chr3_1:85275983-85276002 None:intergenic 45.0%
CCAAAAGGAGAAGTTGAGCA+AGG - chr3_1:85275990-85276009 None:intergenic 45.0%
! CCTTGCTCAACTTCTCCTTT+TGG + chr3_1:85275987-85276006 Msa0382620:intron 45.0%
! ATTCCAGATGGAGGAGTGTA+AGG - chr3_1:85276032-85276051 None:intergenic 45.0%
TAGTGACCGGAGATGATACA+AGG - chr3_1:85276204-85276223 None:intergenic 45.0%
TAAAACAAGCACCAAGGGCT+TGG - chr3_1:85276351-85276370 None:intergenic 45.0%
ACCTTGCATCACAAATCCCT+CGG + chr3_1:85276414-85276433 Msa0382620:intron 45.0%
TTAGCAGTTGCTGCTCAAAG+GGG - chr3_1:85276517-85276536 None:intergenic 45.0%
GTTAGCAGTTGCTGCTCAAA+GGG - chr3_1:85276518-85276537 None:intergenic 45.0%
TGTTAGCAGTTGCTGCTCAA+AGG - chr3_1:85276519-85276538 None:intergenic 45.0%
! GGATACAGGTGCAAAAGTGT+CGG + chr3_1:85276561-85276580 Msa0382620:intron 45.0%
AGGCCAGACTCGTAGTTAAA+GGG - chr3_1:85276615-85276634 None:intergenic 45.0%
AAGGCCAGACTCGTAGTTAA+AGG - chr3_1:85276616-85276635 None:intergenic 45.0%
GAAGATGATCCCTCCATTAG+AGG - chr3_1:85276873-85276892 None:intergenic 45.0%
CTGTATCCCACAAAAATGCC+CGG + chr3_1:85277080-85277099 Msa0382620:intron 45.0%
CCTTACACTCCCGAACAAAA+TGG - chr3_1:85277374-85277393 None:intergenic 45.0%
!! CCATTTTGTTCGGGAGTGTA+AGG + chr3_1:85277371-85277390 Msa0382620:intron 45.0%
CTCATTCACACAGATGTTGC+AGG - chr3_1:85277653-85277672 None:intergenic 45.0%
! AGTGGCTCTCCAAACAGTTT+TGG + chr3_1:85277685-85277704 Msa0382620:intron 45.0%
! GTGGCTCTCCAAACAGTTTT+GGG + chr3_1:85277686-85277705 Msa0382620:intron 45.0%
AACTGCAATGCTTGCCAGTT+TGG - chr3_1:85277734-85277753 None:intergenic 45.0%
! AACTGGCAAGCATTGCAGTT+TGG + chr3_1:85277734-85277753 Msa0382620:intron 45.0%
AGACATGTCAAGAGGTCTAC+CGG - chr3_1:85277777-85277796 None:intergenic 45.0%
AAGTCAGTCCCACTGAACTT+TGG - chr3_1:85277853-85277872 None:intergenic 45.0%
CATCTTTGACATCACTGGTC+GGG - chr3_1:85277954-85277973 None:intergenic 45.0%
CTTCATCTTGCTCTACAACC+TGG + chr3_1:85278296-85278315 Msa0382620:intron 45.0%
ACAACTTGAAGTCAAAGCCC+AGG - chr3_1:85278317-85278336 None:intergenic 45.0%
GTTCAGATGTTGGAGAAGAC+CGG - chr3_1:85278404-85278423 None:intergenic 45.0%
GGTCTTCTCCAACATCTGAA+CGG + chr3_1:85278403-85278422 Msa0382620:intron 45.0%
! TGCGAGCACTGTGGTAAAAT+GGG - chr3_1:85278436-85278455 None:intergenic 45.0%
! TTGCGAGCACTGTGGTAAAA+TGG - chr3_1:85278437-85278456 None:intergenic 45.0%
! ATTTTACCACAGTGCTCGCA+AGG + chr3_1:85278436-85278455 Msa0382620:intron 45.0%
GGCAACCAAAGCAAAGATAG+AGG - chr3_1:85278481-85278500 None:intergenic 45.0%
!! CATGTAGTTGGAAGTACTGC+AGG - chr3_1:85278502-85278521 None:intergenic 45.0%
AGGCAAGATCATGTGGTTGA+AGG - chr3_1:85278544-85278563 None:intergenic 45.0%
GCTTATGAGGCAAGATCATG+TGG - chr3_1:85278551-85278570 None:intergenic 45.0%
AAGAGCAACGAAGGCTTATG+AGG - chr3_1:85278564-85278583 None:intergenic 45.0%
! GTCTTTTGTGTTCTCCAAGG+TGG + chr3_1:85278630-85278649 Msa0382620:intron 45.0%
GCTGCAGAATAATCCTACCA+TGG - chr3_1:85279016-85279035 None:intergenic 45.0%
AAGAATGGAGTCTTACCTGG+AGG - chr3_1:85279085-85279104 None:intergenic 45.0%
ACTCCATTCTTACTGCCCAA+AGG + chr3_1:85279094-85279113 Msa0382620:intron 45.0%
TGACCTTTGGGCAGTAAGAA+TGG - chr3_1:85279100-85279119 None:intergenic 45.0%
TGGGGAGAACTATGACCTTT+GGG - chr3_1:85279112-85279131 None:intergenic 45.0%
ATGGGGAGAACTATGACCTT+TGG - chr3_1:85279113-85279132 None:intergenic 45.0%
TAGTTCTCCCCATCAAAGAC+AGG + chr3_1:85279120-85279139 Msa0382620:intron 45.0%
TTGCTCCTCCTGTCTTTGAT+GGG - chr3_1:85279131-85279150 None:intergenic 45.0%
TCTTACGGGACCTGTGAAAA+TGG - chr3_1:85279178-85279197 None:intergenic 45.0%
CACCAGAGCTATCATCTTAC+GGG - chr3_1:85279192-85279211 None:intergenic 45.0%
GCACCAGAGCTATCATCTTA+CGG - chr3_1:85279193-85279212 None:intergenic 45.0%
!! TAGCTCTGGTGCCAATTTGT+TGG + chr3_1:85279201-85279220 Msa0382620:intron 45.0%
! CAGGGAAGAGTACGTTGAAA+TGG + chr3_1:85274305-85274324 Msa0382620:intron 45.0%
TCACCACTAAACTAGGAACG+TGG + chr3_1:85274408-85274427 Msa0382620:intron 45.0%
CACCACTAAACTAGGAACGT+GGG + chr3_1:85274409-85274428 Msa0382620:intron 45.0%
ATCCCACGTTCCTAGTTTAG+TGG - chr3_1:85274414-85274433 None:intergenic 45.0%
! TGCTTTTGGACTGCATTACG+TGG - chr3_1:85274524-85274543 None:intergenic 45.0%
GAAGGGTAATCTAGTGCAAG+GGG - chr3_1:85279767-85279786 None:intergenic 45.0%
CTGAAGGGTAATCTAGTGCA+AGG - chr3_1:85279769-85279788 None:intergenic 45.0%
TGCTCTCCATGACAGATAGT+TGG + chr3_1:85279960-85279979 Msa0382620:intron 45.0%
TTCCATGCCTTTCATTTCCC+TGG + chr3_1:85280028-85280047 Msa0382620:intron 45.0%
! CGCGCAGAAAATTTGAAGCA+CGG - chr3_1:85280223-85280242 None:intergenic 45.0%
GCAATCAATGATGCAGGAAC+TGG - chr3_1:85280444-85280463 None:intergenic 45.0%
! GTTCCTGCATCATTGATTGC+AGG + chr3_1:85280444-85280463 Msa0382620:CDS 45.0%
CTCCAATAAGACTAGGTGTC+AGG - chr3_1:85280819-85280838 None:intergenic 45.0%
AGCCGCTGAACCAATCAAAA+GGG - chr3_1:85280938-85280957 None:intergenic 45.0%
! TGCAACTTTTCCACTTGAGG+TGG + chr3_1:85280975-85280994 Msa0382620:CDS 45.0%
ACTAGAACAAGAAGGGATCC+AGG + chr3_1:85281074-85281093 Msa0382620:CDS 45.0%
CTAGAACAAGAAGGGATCCA+GGG + chr3_1:85281075-85281094 Msa0382620:CDS 45.0%
GGATCCAGGGTCTATATAGA+GGG + chr3_1:85281088-85281107 Msa0382620:CDS 45.0%
GGCACTAACTTCATGCAACT+AGG - chr3_1:85281120-85281139 None:intergenic 45.0%
AGATAACGACGAGGAGGAAT+AGG + chr3_1:85281191-85281210 Msa0382620:CDS 45.0%
TATGCAGCAGTTCCACAACT+TGG - chr3_1:85281240-85281259 None:intergenic 45.0%
CCAACATTCCATTCTCAGAG+GGG - chr3_1:85281375-85281394 None:intergenic 45.0%
CCAAGACACAATGAAAAGCC+TGG - chr3_1:85281421-85281440 None:intergenic 45.0%
! CCAGGCTTTTCATTGTGTCT+TGG + chr3_1:85281418-85281437 Msa0382620:three_prime_UTR 45.0%
GGTCAAGTGGGAATAGGGTT+TGG + chr3_1:85273257-85273276 Msa0382620:CDS 50.0%
!! CCTAATGGTGTTACGGGCAA+GGG + chr3_1:85273392-85273411 Msa0382620:CDS 50.0%
!! CTAATGGTGTTACGGGCAAG+GGG + chr3_1:85273393-85273412 Msa0382620:CDS 50.0%
!! TAATGGTGTTACGGGCAAGG+GGG + chr3_1:85273394-85273413 Msa0382620:CDS 50.0%
TAGAACCACTGTGGCACCTT+TGG + chr3_1:85273532-85273551 Msa0382620:CDS 50.0%
TGTGCAATGATATCCACCCC+TGG + chr3_1:85274109-85274128 Msa0382620:intron 50.0%
GTGCAATGATATCCACCCCT+GGG + chr3_1:85274110-85274129 Msa0382620:intron 50.0%
TGCAATGATATCCACCCCTG+GGG + chr3_1:85274111-85274130 Msa0382620:intron 50.0%
!! ATGGCTCTAGATAGACCCCA+GGG - chr3_1:85274129-85274148 None:intergenic 50.0%
AGCCCAGTTCTCTGACTCAA+AGG + chr3_1:85274199-85274218 Msa0382620:intron 50.0%
!! GCCAATTTTGACAGTCCCGT+TGG - chr3_1:85274238-85274257 None:intergenic 50.0%
ACGGGACTGTCAAAATTGGC+GGG + chr3_1:85274238-85274257 Msa0382620:intron 50.0%
!! TCGAACTTGCTGACAGGAAG+TGG + chr3_1:85274603-85274622 Msa0382620:intron 50.0%
! TTCTCTGATAGTGACTGGGC+TGG - chr3_1:85275005-85275024 None:intergenic 50.0%
!! TCGAACTTGCTGACAGGAAG+TGG + chr3_1:85274603-85274622 Msa0382620:intron 50.0%
! TTCTCTGATAGTGACTGGGC+TGG - chr3_1:85275005-85275024 None:intergenic 50.0%
GACCGGAGATGATACAAGGT+TGG - chr3_1:85276200-85276219 None:intergenic 50.0%
CCTTGCATCACAAATCCCTC+GGG + chr3_1:85276415-85276434 Msa0382620:intron 50.0%
ATATATGTGGAGCAGCCCGA+GGG - chr3_1:85276433-85276452 None:intergenic 50.0%
! AGCCTTGTGCCTCTAATGGA+GGG + chr3_1:85276861-85276880 Msa0382620:intron 50.0%
! ATCCCTCCATTAGAGGCACA+AGG - chr3_1:85276866-85276885 None:intergenic 50.0%
GATTCTTCCAGTCCCATTGC+TGG + chr3_1:85276976-85276995 Msa0382620:intron 50.0%
! GCACTTCCGGGCATTTTTGT+GGG - chr3_1:85277089-85277108 None:intergenic 50.0%
! AGCACTTCCGGGCATTTTTG+TGG - chr3_1:85277090-85277109 None:intergenic 50.0%
GAACTTTGGCACAAGCGACT+CGG - chr3_1:85277839-85277858 None:intergenic 50.0%
TCGCTTGTGCCAAAGTTCAG+TGG + chr3_1:85277841-85277860 Msa0382620:intron 50.0%
CGCTTGTGCCAAAGTTCAGT+GGG + chr3_1:85277842-85277861 Msa0382620:intron 50.0%
CACTGGTCGGGAGATTCTTA+GGG - chr3_1:85277942-85277961 None:intergenic 50.0%
TCACTGGTCGGGAGATTCTT+AGG - chr3_1:85277943-85277962 None:intergenic 50.0%
! GAATGCTGGCTGATTGACAG+TGG - chr3_1:85278229-85278248 None:intergenic 50.0%
TGCAGCAAGTGCAATCAGCT+TGG - chr3_1:85278373-85278392 None:intergenic 50.0%
CTTCTCCAACATCTGAACGG+TGG + chr3_1:85278406-85278425 Msa0382620:intron 50.0%
GTCATCCACCGTTCAGATGT+TGG - chr3_1:85278414-85278433 None:intergenic 50.0%
CCAGCCAAGCATCATGTAGT+TGG - chr3_1:85278514-85278533 None:intergenic 50.0%
CCAACTACATGATGCTTGGC+TGG + chr3_1:85278511-85278530 Msa0382620:intron 50.0%
AAGAATACGCAGGGGATGAG+AGG - chr3_1:85278855-85278874 None:intergenic 50.0%
GTAGGATTATTCTGCAGCGG+AGG + chr3_1:85279018-85279037 Msa0382620:intron 50.0%
!! CCTGGAGGCTTTGGATGTTT+GGG - chr3_1:85279070-85279089 None:intergenic 50.0%
!! ACCTGGAGGCTTTGGATGTT+TGG - chr3_1:85279071-85279090 None:intergenic 50.0%
TTCTCCCCATCAAAGACAGG+AGG + chr3_1:85279123-85279142 Msa0382620:intron 50.0%
TGCTCCTCCTGTCTTTGATG+GGG - chr3_1:85279130-85279149 None:intergenic 50.0%
GTTGCTCCTCCTGTCTTTGA+TGG - chr3_1:85279132-85279151 None:intergenic 50.0%
GTCCCGTAAGATGATAGCTC+TGG + chr3_1:85279187-85279206 Msa0382620:intron 50.0%
GACAGCCTCTCTACTTATGC+TGG + chr3_1:85279738-85279757 Msa0382620:intron 50.0%
GGCTTCCAGCATAAGTAGAG+AGG - chr3_1:85279746-85279765 None:intergenic 50.0%
CATTCGAAGAGGAAGGACCA+TGG - chr3_1:85279942-85279961 None:intergenic 50.0%
!! TGGAGAGCATTCGAAGAGGA+AGG - chr3_1:85279949-85279968 None:intergenic 50.0%
!! GTCATGGAGAGCATTCGAAG+AGG - chr3_1:85279953-85279972 None:intergenic 50.0%
AAGAGGGCCAGGGAAATGAA+AGG - chr3_1:85280038-85280057 None:intergenic 50.0%
AAGAACCTATCCGCAAAGCC+TGG + chr3_1:85280402-85280421 Msa0382620:CDS 50.0%
TGATGCAGGAACTGGGAGTT+TGG - chr3_1:85280436-85280455 None:intergenic 50.0%
GCACCTGCAATCAATGATGC+AGG - chr3_1:85280450-85280469 None:intergenic 50.0%
AGTTGAACTCACTCCAGCAC+AGG - chr3_1:85280472-85280491 None:intergenic 50.0%
GGTCCTGCAGAACTTTACAG+AGG + chr3_1:85280793-85280812 Msa0382620:CDS 50.0%
AGGCCTCTGTAAAGTTCTGC+AGG - chr3_1:85280799-85280818 None:intergenic 50.0%
!! GGCCTGACACCTAGTCTTAT+TGG + chr3_1:85280814-85280833 Msa0382620:CDS 50.0%
ACTTTGCCTACGACACTCTG+CGG + chr3_1:85280863-85280882 Msa0382620:CDS 50.0%
CAGCCGCTGAACCAATCAAA+AGG - chr3_1:85280939-85280958 None:intergenic 50.0%
!! CTTTTGATTGGTTCAGCGGC+TGG + chr3_1:85280937-85280956 Msa0382620:CDS 50.0%
GCTCGCAAGCAAATGCAAGT+TGG + chr3_1:85280997-85281016 Msa0382620:CDS 50.0%
! ATGCAAGTTGGAGCTCTCAG+TGG + chr3_1:85281009-85281028 Msa0382620:CDS 50.0%
GGGATCCAGGGTCTATATAG+AGG + chr3_1:85281087-85281106 Msa0382620:CDS 50.0%
CAAGCCCTCTATATAGACCC+TGG - chr3_1:85281095-85281114 None:intergenic 50.0%
CAGGGTCTATATAGAGGGCT+TGG + chr3_1:85281093-85281112 Msa0382620:CDS 50.0%
ATGAAAGAGATTCCAGCGGC+TGG - chr3_1:85281141-85281160 None:intergenic 50.0%
TTTCCACCGAAGCCAAGTTG+TGG + chr3_1:85281225-85281244 Msa0382620:three_prime_UTR 50.0%
GCAGTTCCACAACTTGGCTT+CGG - chr3_1:85281234-85281253 None:intergenic 50.0%
! CAACCCCTCTGAGAATGGAA+TGG + chr3_1:85281320-85281339 Msa0382620:three_prime_UTR 50.0%
! CCCCTCTGAGAATGGAATGT+TGG + chr3_1:85281372-85281391 Msa0382620:three_prime_UTR 50.0%
! TGTGCGGAGGAGTGTGACTT+AGG - chr3_1:85272909-85272928 None:intergenic 55.0%
GCTAAGGCTCTTCGTGTGTG+CGG - chr3_1:85272925-85272944 None:intergenic 55.0%
!! GCCTAATGGTGTTACGGGCA+AGG + chr3_1:85273391-85273410 Msa0382620:CDS 55.0%
CCCTTGCCCGTAACACCATT+AGG - chr3_1:85273395-85273414 None:intergenic 55.0%
!! AGTCTCCAAAGGTGCCACAG+TGG - chr3_1:85273540-85273559 None:intergenic 55.0%
TGCGCCTAGCAAGGCTATTG+AGG + chr3_1:85273682-85273701 Msa0382620:CDS 55.0%
!! TGGCTCTAGATAGACCCCAG+GGG - chr3_1:85274128-85274147 None:intergenic 55.0%
!! CATGGCTCTAGATAGACCCC+AGG - chr3_1:85274130-85274149 None:intergenic 55.0%
! CTGGGGTCTATCTAGAGCCA+TGG + chr3_1:85274128-85274147 Msa0382620:intron 55.0%
CTGCCTTACACTCCTCCATC+TGG + chr3_1:85276026-85276045 Msa0382620:intron 55.0%
ATCCTGCTGTACCAAGCCCT+TGG + chr3_1:85276337-85276356 Msa0382620:intron 55.0%
CCCGAGGGATTTGTGATGCA+AGG - chr3_1:85276418-85276437 None:intergenic 55.0%
GATATATGTGGAGCAGCCCG+AGG - chr3_1:85276434-85276453 None:intergenic 55.0%
ATGTGAGCCTTCTTGCTGCG+AGG - chr3_1:85276805-85276824 None:intergenic 55.0%
! CAGCAGCCTTGTGCCTCTAA+TGG + chr3_1:85276857-85276876 Msa0382620:intron 55.0%
! CAGCCTTGTGCCTCTAATGG+AGG + chr3_1:85276860-85276879 Msa0382620:intron 55.0%
ACGAAGACCAGCAATGGGAC+TGG - chr3_1:85276986-85277005 None:intergenic 55.0%
TTGGGCAGAAGCGGCAAACA+CGG - chr3_1:85277273-85277292 None:intergenic 55.0%
! CACTTGCTGCACTTTGCGTC+CGG + chr3_1:85278382-85278401 Msa0382620:intron 55.0%
TTACCACAGTGCTCGCAAGG+TGG + chr3_1:85278439-85278458 Msa0382620:intron 55.0%
TACCACAGTGCTCGCAAGGT+GGG + chr3_1:85278440-85278459 Msa0382620:intron 55.0%
TGCAGGCTCAAGAGCAACGA+AGG - chr3_1:85278573-85278592 None:intergenic 55.0%
AGCAGTGTTGCATGCGATGC+AGG - chr3_1:85278590-85278609 None:intergenic 55.0%
CGCATGCAACACTGCTGCTA+AGG + chr3_1:85278594-85278613 Msa0382620:intron 55.0%
TGTTTGGGAGGCCGTTGAAG+AGG - chr3_1:85279055-85279074 None:intergenic 55.0%
!! GGAGGCTTTGGATGTTTGGG+AGG - chr3_1:85279067-85279086 None:intergenic 55.0%
CCCAAACATCCAAAGCCTCC+AGG + chr3_1:85279067-85279086 Msa0382620:intron 55.0%
GGAGTCTTACCTGGAGGCTT+TGG - chr3_1:85279079-85279098 None:intergenic 55.0%
GGCCAGGGAAATGAAAGGCA+TGG - chr3_1:85280033-85280052 None:intergenic 55.0%
TTGATTGCAGGTGCCTGTGC+TGG + chr3_1:85280456-85280475 Msa0382620:CDS 55.0%
!! TGCTTTCCGCAGAGTGTCGT+AGG - chr3_1:85280872-85280891 None:intergenic 55.0%
TGGAGCTCTCAGTGGAAGAC+AGG + chr3_1:85281017-85281036 Msa0382620:CDS 55.0%
ATGAAGTTAGTGCCAGCCGC+TGG + chr3_1:85281126-85281145 Msa0382620:CDS 55.0%
GTTCCACAACTTGGCTTCGG+TGG - chr3_1:85281231-85281250 None:intergenic 55.0%
AAGGCTCTTCGTGTGTGCGG+AGG - chr3_1:85272922-85272941 None:intergenic 60.0%
!! CATTCGGGTTGCGCCTAGCA+AGG + chr3_1:85273673-85273692 Msa0382620:CDS 60.0%
CTCTAGATAGACCCCAGGGG+TGG - chr3_1:85274125-85274144 None:intergenic 60.0%
! CACCAAGGGCTTGGTACAGC+AGG - chr3_1:85276342-85276361 None:intergenic 60.0%
CAGTTGCTGCTCAAAGGGGC+TGG - chr3_1:85276513-85276532 None:intergenic 60.0%
CGTGCTTCCTCGCAGCAAGA+AGG + chr3_1:85276795-85276814 Msa0382620:intron 60.0%
GCGGTCTGCTCCTCCTCAAT+TGG + chr3_1:85277884-85277903 Msa0382620:intron 60.0%
! TACCCACCTTGCGAGCACTG+TGG - chr3_1:85278445-85278464 None:intergenic 60.0%
GCAGGGGATGAGAGGATTCG+AGG - chr3_1:85278847-85278866 None:intergenic 60.0%
GCTCTCCAGGCTTTGCGGAT+AGG - chr3_1:85280410-85280429 None:intergenic 60.0%
GGACTGCTCTCCAGGCTTTG+CGG - chr3_1:85280415-85280434 None:intergenic 60.0%
GGGAGTTTGGACTGCTCTCC+AGG - chr3_1:85280423-85280442 None:intergenic 60.0%
TGCTTGCGAGCCACCTCAAG+TGG - chr3_1:85280988-85281007 None:intergenic 60.0%
! GGTGTTACGGGCAAGGGGGA+AGG + chr3_1:85273398-85273417 Msa0382620:CDS 65.0%
GGCAGAAGCGGCAAACACGG+CGG - chr3_1:85277270-85277289 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85272863 85281547 85272863 ID=Msa0382620;Name=Msa0382620
chr3_1 mRNA 85272863 85281547 85272863 ID=Msa0382620-mRNA-1;Parent=Msa0382620;Name=Msa0382620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=280|0.5|0.66|1|1|1|3|335|378
chr3_1 exon 85272863 85273703 85272863 ID=Msa0382620-mRNA-1:exon:22304;Parent=Msa0382620-mRNA-1
chr3_1 exon 85280378 85280479 85280378 ID=Msa0382620-mRNA-1:exon:22305;Parent=Msa0382620-mRNA-1
chr3_1 exon 85280739 85281547 85280739 ID=Msa0382620-mRNA-1:exon:22306;Parent=Msa0382620-mRNA-1
chr3_1 five_prime_UTR 85272863 85273142 85272863 ID=Msa0382620-mRNA-1:five_prime_utr;Parent=Msa0382620-mRNA-1
chr3_1 CDS 85273143 85273703 85273143 ID=Msa0382620-mRNA-1:cds;Parent=Msa0382620-mRNA-1
chr3_1 CDS 85280378 85280479 85280378 ID=Msa0382620-mRNA-1:cds;Parent=Msa0382620-mRNA-1
chr3_1 CDS 85280739 85281212 85280739 ID=Msa0382620-mRNA-1:cds;Parent=Msa0382620-mRNA-1
chr3_1 three_prime_UTR 85281213 85281547 85281213 ID=Msa0382620-mRNA-1:three_prime_utr;Parent=Msa0382620-mRNA-1
Gene Sequence

>Msa0382620

ATGGGTAGGAACAAAATCCAACTCTTTGATGACAAAAGAGATGGGTTTTTCTCTGTTTCAAATTTAGGGTCTCATGAGGATTACTATTATCCTGGTGGTTTGTTTGCTAGTGTTGGTCAAGTGGGAATAGGGTTTGGTGTTCCACAACCAAACCCTTCTGATTCTAATTCCCCTGAAAATGGTGATGACCCTAAATTTCCTTTTAGTGAATTATACGTTAAGTATATTCAATCACTCTGGAAATTTGAGCCTAATGGTGTTACGGGCAAGGGGGAAGGTGAACAAGTTGTTAAGGTGAAGAATAAAAATGGTGGGTTTAAGCTCAAGATTAAGATAAGGAATCCTTCTATTAGAAGGTTGTGTAGTGGAGCAATTGCTGGTGCAATTTCTAGAACCACTGTGGCACCTTTGGAGACTATTAGGACTCATTTGATGGTGGGAAGTAGTGGTCATTCTACCGCTGATGTTTTCCAGGATATTATGAAAACTGATGGATGGAAGGGTTTGTTTAGGGGAAATCTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCTATTGAGCTATTTGCTTATGATACGGTAAACAAGAACCTATCCGCAAAGCCTGGAGAGCAGTCCAAACTCCCAGTTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAAGAGGTGTTTACAATGGTCTCCTTGACGCGTTCATGAAAATAATTAAAGAAGAGGGTCCTGCAGAACTTTACAGAGGCCTGACACCTAGTCTTATTGGAGTTATTCCATATTCGGCTACCAATTACTTTGCCTACGACACTCTGCGGAAAGCATACCGAAAAATTTTCAAACAAGAGAAGATCGGCAACTTTGAAACCCTTTTGATTGGTTCAGCGGCTGGTGCTATTTCAAGTACTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCAAATGCAAGTTGGAGCTCTCAGTGGAAGACAGGTCTACAAAAATGTGGTTCATGCCCTTCTGAGCATACTAGAACAAGAAGGGATCCAGGGTCTATATAGAGGGCTTGGACCTAGTTGCATGAAGTTAGTGCCAGCCGCTGGAATCTCTTTCATGTGTTATGAAGCATGCAAGAAGATATTGATAGATAACGACGAGGAGGAATAG
Protein sequence

>Msa0382620

MGRNKIQLFDDKRDGFFSVSNLGSHEDYYYPGGLFASVGQVGIGFGVPQPNPSDSNSPENGDDPKFPFSELYVKYIQSLWKFEPNGVTGKGEGEQVVKVKNKNGGFKLKIKIRNPSIRRLCSGAIAGAISRTTVAPLETIRTHLMVGSSGHSTADVFQDIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQSKLPVPASLIAGACAGRGVYNGLLDAFMKIIKEEGPAELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKQEKIGNFETLLIGSAAGAISSTATFPLEVARKQMQVGALSGRQVYKNVVHALLSILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKKILIDNDEEE*