AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524940 MtrunA17_Chr3g0137941 91.500 400 12 2 1 378 1 400 0.0 730
Msa0524940 MtrunA17_Chr1g0149111 68.796 407 91 5 2 372 5 411 0.0 520
Msa0524940 MtrunA17_Chr4g0063561 60.156 384 114 8 25 375 21 398 7.40e-153 436
Msa0524940 MtrunA17_Chr4g0000261 35.836 293 150 5 117 372 63 354 3.85e-57 190
Msa0524940 MtrunA17_Chr3g0131501 33.813 278 160 3 118 371 203 480 2.68e-45 162
Msa0524940 MtrunA17_Chr3g0131501 26.556 241 134 7 73 271 239 478 1.46e-14 75.1
Msa0524940 MtrunA17_Chr8g0385571 34.532 278 158 3 118 371 225 502 6.40e-45 161
Msa0524940 MtrunA17_Chr8g0382201 33.106 293 154 3 118 371 193 482 2.59e-43 157
Msa0524940 MtrunA17_Chr8g0347451 31.803 305 157 7 118 371 49 353 3.77e-41 148
Msa0524940 MtrunA17_Chr8g0347451 29.299 157 103 2 225 374 85 240 1.51e-17 83.2
Msa0524940 MtrunA17_Chr5g0396801 31.353 303 159 6 118 371 36 338 5.82e-41 147
Msa0524940 MtrunA17_Chr5g0396801 27.670 206 116 4 200 374 24 227 8.13e-18 84.0
Msa0524940 MtrunA17_Chr3g0115801 33.333 297 156 4 114 371 110 403 1.72e-40 147
Msa0524940 MtrunA17_Chr7g0252401 32.857 280 157 5 118 371 205 479 1.82e-40 149
Msa0524940 MtrunA17_Chr7g0240341 31.186 295 163 9 116 371 21 314 3.99e-35 131
Msa0524940 MtrunA17_Chr7g0242311 30.545 275 153 7 131 377 98 362 2.08e-32 125
Msa0524940 MtrunA17_Chr7g0242311 24.561 171 113 2 117 271 184 354 9.08e-13 68.9
Msa0524940 MtrunA17_Chr2g0296061 29.221 308 160 7 122 371 17 324 2.56e-32 124
Msa0524940 MtrunA17_Chr3g0135861 27.907 301 168 6 117 371 32 329 1.41e-31 122
Msa0524940 MtrunA17_Chr4g0067231 27.044 318 172 5 114 371 8 325 2.33e-31 121
Msa0524940 MtrunA17_Chr4g0006851 31.884 276 148 9 131 377 100 364 7.85e-31 120
Msa0524940 MtrunA17_Chr6g0488081 27.645 293 170 5 118 371 17 306 1.48e-30 119
Msa0524940 MtrunA17_Chr5g0436041 29.936 314 175 9 103 373 12 323 8.21e-27 108
Msa0524940 MtrunA17_Chr7g0269701 27.083 288 173 5 122 374 24 309 3.46e-25 104
Msa0524940 MtrunA17_Chr7g0269701 37.363 91 54 2 291 378 25 115 4.06e-11 63.5
Msa0524940 MtrunA17_Chr8g0386871 27.839 273 167 6 122 371 322 587 1.60e-23 102
Msa0524940 MtrunA17_Chr6g0463041 32.075 159 103 2 215 371 85 240 8.72e-22 93.2
Msa0524940 MtrunA17_Chr1g0201361 29.123 285 164 8 118 378 45 315 4.72e-21 92.8
Msa0524940 MtrunA17_Chr8g0372531 26.690 281 160 8 134 371 28 305 4.75e-21 92.4
Msa0524940 MtrunA17_Chr8g0372531 25.683 183 119 4 192 373 32 198 5.54e-11 63.2
Msa0524940 MtrunA17_Chr4g0040341 24.910 277 164 6 123 359 78 350 7.68e-21 92.8
Msa0524940 MtrunA17_Chr5g0431531 25.606 289 179 8 120 378 39 321 3.21e-19 87.4
Msa0524940 MtrunA17_Chr5g0423111 25.818 275 167 7 132 371 33 305 5.51e-19 87.4
Msa0524940 MtrunA17_Chr5g0423111 28.859 149 104 2 228 375 59 206 5.23e-11 63.5
Msa0524940 MtrunA17_Chr3g0088301 25.271 277 163 6 123 359 96 368 1.03e-18 87.0
Msa0524940 MtrunA17_Chr2g0328891 26.482 253 141 6 155 372 111 353 1.68e-18 85.9
Msa0524940 MtrunA17_Chr2g0328891 29.814 161 93 4 225 372 106 259 5.45e-12 66.6
Msa0524940 MtrunA17_Chr1g0195101 25.191 262 158 6 139 373 55 305 2.62e-18 84.7
Msa0524940 MtrunA17_Chr6g0488341 25.957 235 144 6 158 371 6 231 3.43e-17 80.1
Msa0524940 MtrunA17_Chr6g0455381 27.119 295 167 8 126 376 21 311 6.62e-17 80.9
Msa0524940 MtrunA17_Chr8g0352031 25.090 279 162 7 123 359 71 344 1.60e-16 80.1
Msa0524940 MtrunA17_Chr3g0135801 27.660 188 120 6 202 378 50 232 1.96e-15 76.6
Msa0524940 MtrunA17_Chr8g0393031 25.000 276 159 9 126 359 24 293 1.12e-14 74.3
Msa0524940 MtrunA17_Chr8g0393031 28.571 161 95 4 225 372 58 211 1.69e-12 67.8
Msa0524940 MtrunA17_Chr7g0219891 23.891 293 177 8 126 375 25 314 1.24e-14 73.9
Msa0524940 MtrunA17_Chr8g0383321 24.354 271 171 5 122 374 54 308 4.50e-14 72.4
Msa0524940 MtrunA17_Chr4g0004571 21.575 292 198 4 112 375 8 296 5.28e-14 72.0
Msa0524940 MtrunA17_Chr1g0200171 22.662 278 187 7 117 376 522 789 7.87e-14 73.2
Msa0524940 MtrunA17_Chr5g0411411 23.810 294 181 6 118 371 7 297 8.58e-14 71.2
Msa0524940 MtrunA17_Chr6g0463351 22.519 262 178 4 136 373 83 343 9.68e-14 72.0
Msa0524940 MtrunA17_Chr3g0133111 23.673 245 152 5 160 373 72 312 4.66e-12 66.2
Msa0524940 MtrunA17_Chr8g0366791 23.630 292 184 7 118 371 7 297 6.28e-12 65.9
Msa0524940 MtrunA17_Chr4g0028531 21.201 283 181 7 115 361 17 293 2.46e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524940 AT4G32400.1 61.290 403 118 5 1 377 1 391 6.70e-168 474
Msa0524940 AT3G20240.1 35.836 293 148 5 118 372 50 340 2.68e-56 188
Msa0524940 AT5G64970.1 32.542 295 157 4 116 371 131 422 8.83e-42 152
Msa0524940 AT5G64970.1 29.032 155 107 1 222 376 162 313 1.36e-11 66.2
Msa0524940 AT5G64970.2 32.292 288 153 4 123 371 14 298 9.50e-41 146
Msa0524940 AT5G64970.2 29.032 155 107 1 222 376 38 189 8.45e-12 65.9
Msa0524940 AT5G51050.1 34.420 276 150 6 122 371 225 495 1.99e-38 144
Msa0524940 AT5G51050.1 26.891 238 130 7 76 272 260 494 1.47e-13 72.4
Msa0524940 AT5G61810.2 33.455 275 157 5 118 371 63 332 3.42e-38 140
Msa0524940 AT4G01100.1 30.164 305 162 6 118 371 40 344 4.33e-38 140
Msa0524940 AT4G01100.1 29.114 158 104 2 225 375 76 232 3.84e-18 85.1
Msa0524940 AT4G01100.2 29.781 319 159 7 118 371 40 358 2.18e-37 139
Msa0524940 AT4G01100.2 26.901 171 105 2 225 375 76 246 4.34e-17 82.4
Msa0524940 AT5G61810.1 33.700 273 155 5 120 371 208 475 2.56e-37 140
Msa0524940 AT5G61810.1 27.374 179 101 5 119 271 298 473 2.52e-12 68.6
Msa0524940 AT5G64970.3 31.769 277 147 4 116 353 131 404 9.17e-36 135
Msa0524940 AT5G64970.3 29.032 155 107 1 222 376 162 313 1.08e-11 66.2
Msa0524940 AT4G01100.3 29.932 294 155 6 129 371 1 294 2.12e-35 132
Msa0524940 AT4G01100.3 29.114 158 104 2 225 375 26 182 2.23e-18 85.1
Msa0524940 AT1G78180.1 32.997 297 150 8 118 372 126 415 2.83e-35 134
Msa0524940 AT3G53940.1 31.399 293 163 7 116 371 69 360 4.24e-35 132
Msa0524940 AT2G37890.1 31.169 308 162 9 107 371 32 332 1.07e-34 130
Msa0524940 AT5G07320.1 32.453 265 147 7 129 369 218 474 3.62e-34 132
Msa0524940 AT5G07320.1 29.452 146 100 2 225 370 239 381 6.26e-11 64.3
Msa0524940 AT5G01500.1 31.636 275 150 7 131 377 130 394 2.88e-31 123
Msa0524940 AT5G01500.1 32.237 152 96 2 227 378 160 304 4.05e-18 85.9
Msa0524940 AT5G01500.1 26.627 169 108 2 119 271 218 386 5.94e-11 63.9
Msa0524940 AT3G55640.1 31.081 296 164 8 116 373 34 327 5.44e-31 120
Msa0524940 AT3G55640.4 31.081 296 164 8 116 373 34 327 5.44e-31 120
Msa0524940 AT3G51870.1 29.455 275 156 8 131 377 102 366 6.26e-31 121
Msa0524940 AT3G21390.1 28.618 304 157 6 122 365 21 324 7.97e-31 120
Msa0524940 AT3G21390.1 30.201 149 97 3 225 369 64 209 1.49e-16 80.5
Msa0524940 AT3G21390.2 28.618 304 157 6 122 365 43 346 1.01e-30 120
Msa0524940 AT3G21390.2 30.201 149 97 3 225 369 86 231 1.90e-16 80.1
Msa0524940 AT4G26180.1 27.483 302 174 5 118 378 19 316 1.72e-30 119
Msa0524940 AT5G48970.1 25.723 311 170 6 122 371 24 334 2.44e-28 114
Msa0524940 AT5G48970.1 28.659 164 110 3 214 373 58 218 3.60e-17 82.0
Msa0524940 AT1G14560.1 29.452 292 146 8 131 371 38 320 7.19e-28 112
Msa0524940 AT4G26180.2 26.715 277 158 5 118 353 19 291 5.68e-26 106
Msa0524940 AT4G26180.2 32.468 154 93 2 227 369 56 209 5.12e-16 78.2
Msa0524940 AT5G48970.2 26.587 252 141 4 158 365 6 257 5.38e-25 103
Msa0524940 AT5G48970.2 27.451 153 104 3 228 376 1 150 2.66e-14 72.8
Msa0524940 AT5G66380.1 30.137 292 161 8 121 371 11 300 1.59e-23 99.8
Msa0524940 AT5G66380.1 26.042 192 126 3 188 378 24 200 4.74e-12 66.6
Msa0524940 AT1G14560.2 28.832 274 135 8 131 353 38 302 2.10e-22 96.7
Msa0524940 AT1G14560.2 29.375 160 92 3 227 369 62 217 7.17e-16 78.2
Msa0524940 AT1G34065.2 28.058 278 164 7 120 378 75 335 3.00e-21 94.0
Msa0524940 AT1G14560.3 33.117 154 94 2 224 371 72 222 3.80e-21 91.7
Msa0524940 AT2G30160.1 25.517 290 180 6 120 377 42 327 3.85e-21 93.6
Msa0524940 AT1G34065.1 28.058 278 164 7 120 378 82 342 3.93e-21 93.6
Msa0524940 AT1G07030.1 25.263 285 176 6 120 373 40 318 7.13e-21 92.8
Msa0524940 AT1G25380.1 27.574 272 155 7 132 365 33 300 2.73e-20 91.7
Msa0524940 AT1G25380.2 27.574 272 155 7 132 365 33 300 2.73e-20 91.7
Msa0524940 AT4G11440.1 27.338 278 176 5 118 371 328 603 6.90e-20 92.0
Msa0524940 AT4G11440.2 27.338 278 176 5 118 371 328 603 6.90e-20 92.0
Msa0524940 AT4G28390.1 24.820 278 163 8 123 359 86 358 4.53e-18 85.1
Msa0524940 AT4G28390.2 24.820 278 163 8 123 359 86 358 4.53e-18 85.1
Msa0524940 AT3G08580.2 24.731 279 163 7 123 359 87 360 3.13e-17 82.8
Msa0524940 AT3G08580.1 24.731 279 163 7 123 359 87 360 3.13e-17 82.8
Msa0524940 AT4G39460.2 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0524940 AT4G39460.1 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0524940 AT4G39460.3 27.306 271 161 7 120 371 58 311 4.94e-17 81.6
Msa0524940 AT5G17400.1 27.843 255 143 10 138 359 43 289 8.82e-17 80.5
Msa0524940 AT5G17400.1 29.341 167 96 4 225 377 54 212 1.46e-12 68.2
Msa0524940 AT2G47490.1 25.704 284 169 6 132 378 29 307 1.14e-16 80.5
Msa0524940 AT5G13490.1 25.000 280 161 7 123 359 91 364 1.71e-16 80.9
Msa0524940 AT5G13490.1 29.448 163 104 3 225 378 128 288 1.17e-11 66.2
Msa0524940 AT5G13490.2 25.000 280 161 7 123 359 91 364 1.71e-16 80.9
Msa0524940 AT5G13490.2 29.448 163 104 3 225 378 128 288 1.17e-11 66.2
Msa0524940 AT5G46800.2 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0524940 AT5G46800.3 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0524940 AT5G46800.1 25.676 296 176 9 118 371 6 299 2.81e-16 79.0
Msa0524940 AT5G56450.1 28.049 164 112 3 220 378 74 236 2.04e-15 77.0
Msa0524940 AT3G55640.2 30.612 147 94 3 228 368 79 223 4.22e-15 75.1
Msa0524940 AT3G55640.2 26.697 221 124 6 116 300 34 252 3.30e-11 63.5
Msa0524940 AT3G55640.3 30.612 147 94 3 228 368 79 223 4.22e-15 75.1
Msa0524940 AT3G55640.3 26.697 221 124 6 116 300 34 252 3.30e-11 63.5
Msa0524940 AT3G53940.2 27.273 220 124 5 116 300 69 287 9.68e-15 74.3
Msa0524940 AT3G53940.2 30.612 147 94 3 234 374 120 264 1.31e-14 73.9
Msa0524940 AT1G79900.1 22.692 260 177 3 136 375 32 287 1.22e-13 71.2
Msa0524940 AT1G79900.1 25.397 189 117 3 112 279 101 286 1.60e-12 68.2
Msa0524940 AT5G42130.1 26.471 272 164 8 133 374 131 396 1.33e-13 72.0
Msa0524940 AT5G42130.1 31.013 158 93 5 224 377 150 295 1.93e-11 65.5
Msa0524940 AT2G35800.1 24.275 276 186 9 117 376 542 810 1.84e-13 72.4
Msa0524940 AT5G09470.1 31.944 144 88 3 235 372 99 238 7.26e-13 69.3
Msa0524940 AT4G27940.1 25.869 259 152 7 153 371 149 407 1.45e-12 68.9
Msa0524940 AT5G58970.1 26.552 290 166 12 91 372 49 299 2.09e-12 67.8
Msa0524940 AT5G26200.1 22.378 286 175 7 132 370 51 336 7.84e-12 66.2
Msa0524940 AT2G39970.1 25.328 229 146 8 164 374 106 327 8.20e-12 66.2
Msa0524940 AT1G74240.1 32.500 160 98 4 223 378 186 339 1.02e-11 66.2
Msa0524940 AT1G74240.2 32.500 160 98 4 223 378 138 291 1.12e-11 65.5
Msa0524940 AT4G03115.2 27.673 159 103 3 222 378 70 218 2.73e-11 63.2
Msa0524940 AT4G03115.4 27.673 159 103 3 222 378 70 218 3.92e-11 62.8

Find 127 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCACTAAAAGGAAATTT+AGG 0.125546 3_4:-78486565 None:intergenic
GATTCTAATTCCCCTGAAAA+TGG 0.247936 3_4:+78486535 Msa0524940:CDS
CACAGCAACACTACACAAAA+AGG 0.267677 3_4:+78486116 Msa0524940:five_prime_UTR
AAGTAATTGGTAGCCGAATA+TGG 0.290183 3_4:-78493348 None:intergenic
TTAACGTATAATTCACTAAA+AGG 0.290618 3_4:-78486574 None:intergenic
TATTGGAGTTATTCCATATT+CGG 0.294716 3_4:+78493335 Msa0524940:CDS
GGCCTGACACCTAGTCTTAT+TGG 0.296680 3_4:+78493318 Msa0524940:CDS
TGGATGGAAGGGTTTGTTTA+GGG 0.298083 3_4:+78486867 Msa0524940:CDS
ATTCACTAAAAGGAAATTTA+GGG 0.305139 3_4:-78486564 None:intergenic
TGGCACCTTTGGAGACTATT+AGG 0.317047 3_4:+78486776 Msa0524940:CDS
GGGAGTTTGGACTGCTCTCC+AGG 0.329744 3_4:-78492924 None:intergenic
ATGGATGGAAGGGTTTGTTT+AGG 0.338034 3_4:+78486866 Msa0524940:CDS
TGATGCAGGAACTGGGAGTT+TGG 0.340339 3_4:-78492937 None:intergenic
TAAGGAATCCTTCTATTAGA+AGG 0.342750 3_4:+78486710 Msa0524940:CDS
TAGAACCACTGTGGCACCTT+TGG 0.351090 3_4:+78486765 Msa0524940:CDS
GAAATCTTGTTAATGTCATT+CGG 0.353717 3_4:+78486890 Msa0524940:CDS
GCAATCAATGATGCAGGAAC+TGG 0.354288 3_4:-78492945 None:intergenic
TTTGAGCCTAATGGTGTTAC+GGG 0.368589 3_4:+78486619 Msa0524940:CDS
AGTGTTGGTCAAGTGGGAAT+AGG 0.372936 3_4:+78486484 Msa0524940:CDS
AAATCTTGTTAATGTCATTC+GGG 0.378614 3_4:+78486891 Msa0524940:CDS
CTCTGGAAATTTGAGCCTAA+TGG 0.383482 3_4:+78486610 Msa0524940:CDS
GTGTTGGTCAAGTGGGAATA+GGG 0.395032 3_4:+78486485 Msa0524940:CDS
GTTCCTGCATCATTGATTGC+AGG 0.398153 3_4:+78492948 Msa0524940:CDS
AGATAACGACGAGGAGGAAT+AGG 0.402308 3_4:+78493695 Msa0524940:CDS
GGTCAAGTGGGAATAGGGTT+TGG 0.403207 3_4:+78486490 Msa0524940:CDS
GACAGTTTGTTTCAAGTTTG+AGG 0.418932 3_4:-78486285 None:intergenic
GACTATTAGGACTCATTTGA+TGG 0.419164 3_4:+78486789 Msa0524940:CDS
CTACACAACCTTCTAATAGA+AGG 0.424911 3_4:-78486718 None:intergenic
GAATCAGAAGGGTTTGGTTG+TGG 0.427235 3_4:-78486517 None:intergenic
GAATTAGAATCAGAAGGGTT+TGG 0.431685 3_4:-78486523 None:intergenic
CAGGGTCTATATAGAGGGCT+TGG 0.438449 3_4:+78493597 Msa0524940:CDS
ATTTGAGCCTAATGGTGTTA+CGG 0.440900 3_4:+78486618 Msa0524940:CDS
TGTTTATTTACGTTGCTGCC+AGG 0.444441 3_4:+78493855 Msa0524940:three_prime_UTR
CCTAATGGTGTTACGGGCAA+GGG 0.453681 3_4:+78486625 Msa0524940:CDS
GGACTGCTCTCCAGGCTTTG+CGG 0.454230 3_4:-78492916 None:intergenic
TGGAGCTCTCAGTGGAAGAC+AGG 0.455160 3_4:+78493521 Msa0524940:CDS
CAGCCGCTGAACCAATCAAA+AGG 0.456453 3_4:-78493440 None:intergenic
ACAGTTTGTTTCAAGTTTGA+GGG 0.457774 3_4:-78486284 None:intergenic
GCAGTTCCACAACTTGGCTT+CGG 0.459919 3_4:-78493735 None:intergenic
GGTGGTTTGTTTGCTAGTGT+TGG 0.463456 3_4:+78486469 Msa0524940:CDS
GCTCTCCAGGCTTTGCGGAT+AGG 0.463551 3_4:-78492911 None:intergenic
CTCCAATAAGACTAGGTGTC+AGG 0.465823 3_4:-78493320 None:intergenic
TCAACTTCATAAAATATGAT+TGG 0.469031 3_4:-78493966 None:intergenic
TTGATTGCAGGTGCCTGTGC+TGG 0.469256 3_4:+78492960 Msa0524940:CDS
ATTAATTGAATAATGATTCG+TGG 0.470394 3_4:-78486216 None:intergenic
ACTAGAACAAGAAGGGATCC+AGG 0.475653 3_4:+78493578 Msa0524940:CDS
CTCTTTGATGACAAAAGAGA+TGG 0.481584 3_4:+78486397 Msa0524940:CDS
TTGTGTAGTGGAGCAATTGC+TGG 0.481763 3_4:+78486733 Msa0524940:CDS
GGGATCCAGGGTCTATATAG+AGG 0.481983 3_4:+78493591 Msa0524940:CDS
CAGGATATTATGAAAACTGA+TGG 0.484050 3_4:+78486847 Msa0524940:CDS
CTTGTTCTAGTATGCTCAGA+AGG 0.484061 3_4:-78493566 None:intergenic
GCCTAATGGTGTTACGGGCA+AGG 0.486297 3_4:+78486624 Msa0524940:CDS
AGTGTCGTAGGCAAAGTAAT+TGG 0.491022 3_4:-78493361 None:intergenic
AGGCCTCTGTAAAGTTCTGC+AGG 0.491988 3_4:-78493300 None:intergenic
CATGAGGATTACTATTATCC+TGG 0.492331 3_4:+78486448 Msa0524940:CDS
AAGAACCTATCCGCAAAGCC+TGG 0.493720 3_4:+78492906 Msa0524940:CDS
GGAAGGTGAACAAGTTGTTA+AGG 0.501044 3_4:+78486648 Msa0524940:CDS
TATGCAGCAGTTCCACAACT+TGG 0.503611 3_4:-78493741 None:intergenic
CCCCTCTGAGAATGGAATGT+TGG 0.505283 3_4:+78493827 Msa0524940:three_prime_UTR
CCCTTGCCCGTAACACCATT+AGG 0.507798 3_4:-78486625 None:intergenic
TATTCATTCTAACACTAAGA+TGG 0.508904 3_4:-78486250 None:intergenic
ACAGCTATTTGCTTATGATA+CGG 0.513297 3_4:+78492878 Msa0524940:intron
TGCTTGCGAGCCACCTCAAG+TGG 0.518650 3_4:-78493489 None:intergenic
ATTCTAACACTAAGATGGAA+TGG 0.524931 3_4:-78486245 None:intergenic
GGATGGAAGGGTTTGTTTAG+GGG 0.528599 3_4:+78486868 Msa0524940:CDS
ATGAAAACTGATGGATGGAA+GGG 0.528727 3_4:+78486856 Msa0524940:CDS
TGTCACTCTGTGCTAAGAAA+AGG 0.530085 3_4:+78486304 Msa0524940:five_prime_UTR
TTAAGCTCAAGATTAAGATA+AGG 0.531801 3_4:+78486692 Msa0524940:CDS
GTTCCACAACTTGGCTTCGG+TGG 0.531988 3_4:-78493732 None:intergenic
TATGAAAACTGATGGATGGA+AGG 0.533911 3_4:+78486855 Msa0524940:CDS
TCAGGGGAATTAGAATCAGA+AGG 0.536789 3_4:-78486529 None:intergenic
ATGAATTGAAATGAATGCTA+AGG 0.540399 3_4:-78486172 None:intergenic
CATGAAAATAATTAAAGAAG+AGG 0.547955 3_4:+78493275 Msa0524940:CDS
TGCGCCTAGCAAGGCTATTG+AGG 0.550247 3_4:+78486915 Msa0524940:CDS
GTTTGCTAGTGTTGGTCAAG+TGG 0.552428 3_4:+78486477 Msa0524940:CDS
CAATCAATGATGCAGGAACT+GGG 0.552440 3_4:-78492944 None:intergenic
CCAAGACACAATGAAAAGCC+TGG 0.554074 3_4:-78493873 None:intergenic
TTTGCTAGTGTTGGTCAAGT+GGG 0.555292 3_4:+78486478 Msa0524940:CDS
ACCAACATTCCATTCTCAGA+GGG 0.556979 3_4:-78493828 None:intergenic
CATTCGGGTTGCGCCTAGCA+AGG 0.557121 3_4:+78486906 Msa0524940:CDS
TTAAGTATATTCAATCACTC+TGG 0.561876 3_4:+78486593 Msa0524940:CDS
ATGAAAGAGATTCCAGCGGC+TGG 0.561878 3_4:-78493642 None:intergenic
GCTCGCAAGCAAATGCAAGT+TGG 0.562624 3_4:+78493501 Msa0524940:CDS
CATTTGATGGTGGGAAGTAG+TGG 0.562649 3_4:+78486802 Msa0524940:CDS
ATTAGGACTCATTTGATGGT+GGG 0.563542 3_4:+78486793 Msa0524940:CDS
CAGGGGAATTAGAATCAGAA+GGG 0.563815 3_4:-78486528 None:intergenic
TTTCCACCGAAGCCAAGTTG+TGG 0.563835 3_4:+78493729 Msa0524940:three_prime_UTR
ATTACCTCAATAGCCTTGCT+AGG 0.568427 3_4:-78486919 None:intergenic
AGTTGAACTCACTCCAGCAC+AGG 0.568725 3_4:-78492973 None:intergenic
AGCCGCTGAACCAATCAAAA+GGG 0.571340 3_4:-78493439 None:intergenic
GCACCTGCAATCAATGATGC+AGG 0.573834 3_4:-78492951 None:intergenic
TATTAGGACTCATTTGATGG+TGG 0.584361 3_4:+78486792 Msa0524940:CDS
TCTATTAGAAGGTTGTGTAG+TGG 0.586868 3_4:+78486721 Msa0524940:CDS
ATGAAGTTAGTGCCAGCCGC+TGG 0.587015 3_4:+78493630 Msa0524940:CDS
TCTTTGATGACAAAAGAGAT+GGG 0.588905 3_4:+78486398 Msa0524940:CDS
CTAATGGTGTTACGGGCAAG+GGG 0.590038 3_4:+78486626 Msa0524940:CDS
CTGAGCATACTAGAACAAGA+AGG 0.593797 3_4:+78493570 Msa0524940:CDS
ATGAAAATAATTAAAGAAGA+GGG 0.593954 3_4:+78493276 Msa0524940:CDS
TTGTTCTAGTATGCTCAGAA+GGG 0.596267 3_4:-78493565 None:intergenic
CAAGCCCTCTATATAGACCC+TGG 0.597259 3_4:-78493596 None:intergenic
GCTAAGGCTCTTCGTGTGTG+CGG 0.600801 3_4:-78486156 None:intergenic
TTCAAATTTAGGGTCTCATG+AGG 0.600906 3_4:+78486432 Msa0524940:CDS
AAAAGAAGGTATGGATTCAG+TGG 0.607412 3_4:+78486093 None:intergenic
ATATTATGAAAACTGATGGA+TGG 0.609112 3_4:+78486851 Msa0524940:CDS
GAGGATTACTATTATCCTGG+TGG 0.610245 3_4:+78486451 Msa0524940:CDS
TGAGCATACTAGAACAAGAA+GGG 0.614672 3_4:+78493571 Msa0524940:CDS
TGCTTTCCGCAGAGTGTCGT+AGG 0.615525 3_4:-78493373 None:intergenic
GGCACTAACTTCATGCAACT+AGG 0.618304 3_4:-78493621 None:intergenic
AAGGCTCTTCGTGTGTGCGG+AGG 0.621792 3_4:-78486153 None:intergenic
CTAGAACAAGAAGGGATCCA+GGG 0.626781 3_4:+78493579 Msa0524940:CDS
TTGCAGAGAGGTGTTTACAA+TGG 0.627413 3_4:+78493237 Msa0524940:intron
GGATCCAGGGTCTATATAGA+GGG 0.632956 3_4:+78493592 Msa0524940:CDS
ACTTTGCCTACGACACTCTG+CGG 0.638131 3_4:+78493367 Msa0524940:CDS
GGAATAACTCCAATAAGACT+AGG 0.640014 3_4:-78493327 None:intergenic
TGAGTCCTAATAGTCTCCAA+AGG 0.641578 3_4:-78486781 None:intergenic
ACACTAGCAAACAAACCACC+AGG 0.654663 3_4:-78486466 None:intergenic
AACCAACATTCCATTCTCAG+AGG 0.668047 3_4:-78493829 None:intergenic
ATTGATAGATAACGACGAGG+AGG 0.678212 3_4:+78493689 Msa0524940:CDS
ATGCAAGTTGGAGCTCTCAG+TGG 0.678622 3_4:+78493513 Msa0524940:CDS
TAATGGTGTTACGGGCAAGG+GGG 0.685871 3_4:+78486627 Msa0524940:CDS
AGTCTCCAAAGGTGCCACAG+TGG 0.705525 3_4:-78486770 None:intergenic
AATATCCTGGAAAACATCAG+CGG 0.708839 3_4:-78486833 None:intergenic
CCAACATTCCATTCTCAGAG+GGG 0.722848 3_4:-78493827 None:intergenic
GGTCCTGCAGAACTTTACAG+AGG 0.733792 3_4:+78493297 Msa0524940:CDS
TGCAATTTCTAGAACCACTG+TGG 0.742671 3_4:+78486756 Msa0524940:CDS
ACACATGAAAGAGATTCCAG+CGG 0.747929 3_4:-78493646 None:intergenic
GATATTGATAGATAACGACG+AGG 0.784110 3_4:+78493686 Msa0524940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAGAAAATATGATATTA+TGG - chr3_4:78487128-78487147 None:intergenic 15.0%
!!! TTTTTATTTTAGTCAATAAG+TGG - chr3_4:78487702-78487721 None:intergenic 15.0%
!!! ATTTTTAAAGTTTAAGAAGA+TGG - chr3_4:78490021-78490040 None:intergenic 15.0%
!!! TTTTTATTTTAGTCAATAAG+TGG - chr3_4:78487702-78487721 None:intergenic 15.0%
!!! TATTTGTTAATTATTGCTTT+TGG - chr3_4:78491995-78492014 None:intergenic 15.0%
!!! TTTTTTTTTCAACATTGAAA+GGG - chr3_4:78492062-78492081 None:intergenic 15.0%
!!! TTTTTTTTTTCAACATTGAA+AGG - chr3_4:78492063-78492082 None:intergenic 15.0%
!!! TTAATGTTTTAACATCATAT+TGG + chr3_4:78493178-78493197 Msa0524940:intron 15.0%
!! ATGAAAATAATTAAAGAAGA+GGG + chr3_4:78493276-78493295 Msa0524940:CDS 15.0%
!! ATTAATTGAATAATGATTCG+TGG - chr3_4:78486219-78486238 None:intergenic 20.0%
!!! TTTTTCTCTGTTTCAAATTT+AGG + chr3_4:78486421-78486440 Msa0524940:CDS 20.0%
!!! TTTTCTCTGTTTCAAATTTA+GGG + chr3_4:78486422-78486441 Msa0524940:CDS 20.0%
!! ATTCACTAAAAGGAAATTTA+GGG - chr3_4:78486567-78486586 None:intergenic 20.0%
!! AATTCACTAAAAGGAAATTT+AGG - chr3_4:78486568-78486587 None:intergenic 20.0%
!! TTAACGTATAATTCACTAAA+AGG - chr3_4:78486577-78486596 None:intergenic 20.0%
!! TTTGATTAGGGATTATTAAT+TGG + chr3_4:78487093-78487112 Msa0524940:intron 20.0%
!! TTGATTAGGGATTATTAATT+GGG + chr3_4:78487094-78487113 Msa0524940:intron 20.0%
!!! TCATATTTTCTAAGATTTCA+AGG + chr3_4:78487133-78487152 Msa0524940:intron 20.0%
!! TTATATCCCAAATATTCTTA+TGG + chr3_4:78487172-78487191 Msa0524940:intron 20.0%
!! CTAAAACCATAAGAATATTT+GGG - chr3_4:78487181-78487200 None:intergenic 20.0%
!!! TCTAAAACCATAAGAATATT+TGG - chr3_4:78487182-78487201 None:intergenic 20.0%
!!! GTTTTAGAACTTTTTAGAAT+TGG + chr3_4:78487194-78487213 Msa0524940:intron 20.0%
!! TGAAAAATAATATGATAGAC+AGG + chr3_4:78487519-78487538 Msa0524940:intron 20.0%
!! GAAAAATAATATGATAGACA+GGG + chr3_4:78487520-78487539 Msa0524940:intron 20.0%
!! AGAATATTGAGATATGTTAA+AGG - chr3_4:78488316-78488335 None:intergenic 20.0%
!!! TTTCCTTTGCATATTTTTTT+TGG + chr3_4:78488566-78488585 Msa0524940:intron 20.0%
!! GATACAAAAAAACAAAACAT+GGG - chr3_4:78489235-78489254 None:intergenic 20.0%
!! TGATACAAAAAAACAAAACA+TGG - chr3_4:78489236-78489255 None:intergenic 20.0%
!! CTATGAAAAGAATAAAGTAT+AGG + chr3_4:78490102-78490121 Msa0524940:intron 20.0%
!! TTGGTCAATTATTAGAAAAA+GGG - chr3_4:78490514-78490533 None:intergenic 20.0%
!! TAGAATTGTTGAAAAAATTC+TGG - chr3_4:78491194-78491213 None:intergenic 20.0%
!! TGAAAAATAATATGATAGAC+AGG + chr3_4:78487519-78487538 Msa0524940:intron 20.0%
!! GAAAAATAATATGATAGACA+GGG + chr3_4:78487520-78487539 Msa0524940:intron 20.0%
!!! GTTTTATGATTGTCTATTAA+TGG + chr3_4:78492206-78492225 Msa0524940:intron 20.0%
!!! TCTATTAATGGATTCATTTA+CGG + chr3_4:78492218-78492237 Msa0524940:intron 20.0%
!! AGTAATTATATATACATACC+TGG - chr3_4:78493043-78493062 None:intergenic 20.0%
!! AAGCAAAATTATGTATATAC+AGG - chr3_4:78493151-78493170 None:intergenic 20.0%
!! GATGTTAAAACATTAATATG+AGG - chr3_4:78493174-78493193 None:intergenic 20.0%
!! CATGAAAATAATTAAAGAAG+AGG + chr3_4:78493275-78493294 Msa0524940:CDS 20.0%
!!! TCTCTTGTTTGAAAATTTTT+CGG - chr3_4:78493401-78493420 None:intergenic 20.0%
!!! CATACTTTTTTGATACATTT+CGG + chr3_4:78493760-78493779 Msa0524940:three_prime_UTR 20.0%
!! TCAACTTCATAAAATATGAT+TGG - chr3_4:78493969-78493988 None:intergenic 20.0%
! ATGAATTGAAATGAATGCTA+AGG - chr3_4:78486175-78486194 None:intergenic 25.0%
! TATTCATTCTAACACTAAGA+TGG - chr3_4:78486253-78486272 None:intergenic 25.0%
!!! ACAATTCAAAACCTGTTTTT+TGG + chr3_4:78486350-78486369 Msa0524940:five_prime_UTR 25.0%
! TTAAGTATATTCAATCACTC+TGG + chr3_4:78486593-78486612 Msa0524940:CDS 25.0%
! GTTAAGGTGAAGAATAAAAA+TGG + chr3_4:78486664-78486683 Msa0524940:CDS 25.0%
! TTAAGCTCAAGATTAAGATA+AGG + chr3_4:78486692-78486711 Msa0524940:CDS 25.0%
! ATATTATGAAAACTGATGGA+TGG + chr3_4:78486851-78486870 Msa0524940:CDS 25.0%
! GAAATCTTGTTAATGTCATT+CGG + chr3_4:78486890-78486909 Msa0524940:CDS 25.0%
! AAATCTTGTTAATGTCATTC+GGG + chr3_4:78486891-78486910 Msa0524940:CDS 25.0%
!!! TACTAACTGCAATTTTGATT+AGG + chr3_4:78487080-78487099 Msa0524940:intron 25.0%
!!! ACTAACTGCAATTTTGATTA+GGG + chr3_4:78487081-78487100 Msa0524940:intron 25.0%
!!! ACTTTTTAGAATTGGCAAAA+TGG + chr3_4:78487202-78487221 Msa0524940:intron 25.0%
!! ATAGTTTTTGTATTAGAGCT+AGG + chr3_4:78487247-78487266 Msa0524940:intron 25.0%
! TAACCACAAAACTTGATTTA+CGG + chr3_4:78488078-78488097 Msa0524940:intron 25.0%
! AATATTGAGAAAATTCCAGA+TGG - chr3_4:78488548-78488567 None:intergenic 25.0%
! AATGATCACTTAATGAGTAT+AGG - chr3_4:78488820-78488839 None:intergenic 25.0%
! TATTGAAAAAAGCCCTTTAT+GGG - chr3_4:78488879-78488898 None:intergenic 25.0%
! TTTACAAGAAGAGATATATG+TGG - chr3_4:78488950-78488969 None:intergenic 25.0%
! TGGCTCAATCAATAAATATA+AGG - chr3_4:78489139-78489158 None:intergenic 25.0%
! AAAAGTCATTGGAGTTAAAT+GGG - chr3_4:78489187-78489206 None:intergenic 25.0%
!! TTTAAAGTTTAAGAAGATGG+TGG - chr3_4:78490018-78490037 None:intergenic 25.0%
! GTTGGTCAATTATTAGAAAA+AGG - chr3_4:78490515-78490534 None:intergenic 25.0%
! CAAAACAGCAAAAGAAATAT+GGG - chr3_4:78491395-78491414 None:intergenic 25.0%
! TCAAAACAGCAAAAGAAATA+TGG - chr3_4:78491396-78491415 None:intergenic 25.0%
!!! ATATTTCTTTTGCTGTTTTG+AGG + chr3_4:78491395-78491414 Msa0524940:intron 25.0%
!!! TATTTCTTTTGCTGTTTTGA+GGG + chr3_4:78491396-78491415 Msa0524940:intron 25.0%
! ATACCAAATAACCAACAAAT+TGG - chr3_4:78491720-78491739 None:intergenic 25.0%
! TCTTTCTTCATAAAAGAACT+TGG - chr3_4:78492090-78492109 None:intergenic 25.0%
! TAAAACAATATACCAGAAAC+AGG - chr3_4:78492192-78492211 None:intergenic 25.0%
! TATTGATGAAAACAACTGAA+GGG - chr3_4:78492288-78492307 None:intergenic 25.0%
! ATATTGATGAAAACAACTGA+AGG - chr3_4:78492289-78492308 None:intergenic 25.0%
!! TTTAACTCTTTAGTGGTTTT+AGG + chr3_4:78492561-78492580 Msa0524940:intron 25.0%
!!! TTAACTCTTTAGTGGTTTTA+GGG + chr3_4:78492562-78492581 Msa0524940:intron 25.0%
!!! GTTCTTGTTTCTTGTTTTTT+AGG + chr3_4:78492637-78492656 Msa0524940:intron 25.0%
!!! TTGTTTCTTGTTTTTTAGGT+GGG + chr3_4:78492641-78492660 Msa0524940:intron 25.0%
!! ATAAATAACGCTTTTCTCAT+TGG - chr3_4:78492781-78492800 None:intergenic 25.0%
! TAAAGTCTTACAAGTTATGT+CGG - chr3_4:78493075-78493094 None:intergenic 25.0%
!! ACATAACTTGTAAGACTTTA+TGG + chr3_4:78493075-78493094 Msa0524940:intron 25.0%
! TATTGGAGTTATTCCATATT+CGG + chr3_4:78493335-78493354 Msa0524940:CDS 25.0%
!! ATTTTCAAACAAGAGAAGAT+CGG + chr3_4:78493405-78493424 Msa0524940:CDS 25.0%
!!! CATTTCGGTTAACTTATTTT+TGG + chr3_4:78493775-78493794 Msa0524940:three_prime_UTR 25.0%
!!! TTTGGTTTCTCTTATTTTAC+TGG + chr3_4:78493793-78493812 Msa0524940:three_prime_UTR 25.0%
! CATAATCTAGAGAGAAAAAA+TGG - chr3_4:78494013-78494032 None:intergenic 25.0%
ATTCTAACACTAAGATGGAA+TGG - chr3_4:78486248-78486267 None:intergenic 30.0%
!! ACAGTTTGTTTCAAGTTTGA+GGG - chr3_4:78486287-78486306 None:intergenic 30.0%
!!! AAAACCTGTTTTTTGGTTCA+TGG + chr3_4:78486357-78486376 Msa0524940:exon 30.0%
!!! AAACCTGTTTTTTGGTTCAT+GGG + chr3_4:78486358-78486377 Msa0524940:exon 30.0%
! TCTTTGATGACAAAAGAGAT+GGG + chr3_4:78486398-78486417 Msa0524940:CDS 30.0%
AAGGTGAAGAATAAAAATGG+TGG + chr3_4:78486667-78486686 Msa0524940:CDS 30.0%
AGGTGAAGAATAAAAATGGT+GGG + chr3_4:78486668-78486687 Msa0524940:CDS 30.0%
TAAGGAATCCTTCTATTAGA+AGG + chr3_4:78486710-78486729 Msa0524940:CDS 30.0%
! CATCAGTTTTCATAATATCC+TGG - chr3_4:78486849-78486868 None:intergenic 30.0%
CAGGATATTATGAAAACTGA+TGG + chr3_4:78486847-78486866 Msa0524940:CDS 30.0%
GTATCAAGTGCTATCATTAA+GGG - chr3_4:78486978-78486997 None:intergenic 30.0%
AGTATCAAGTGCTATCATTA+AGG - chr3_4:78486979-78486998 None:intergenic 30.0%
TAATGATAGCACTTGATACT+TGG + chr3_4:78486979-78486998 Msa0524940:intron 30.0%
TAAAGATCTGTCTACCATAT+CGG + chr3_4:78487045-78487064 Msa0524940:intron 30.0%
TATATCATAGACTTCCGATA+TGG - chr3_4:78487062-78487081 None:intergenic 30.0%
TTAGGGATTATTAATTGGGT+AGG + chr3_4:78487098-78487117 Msa0524940:intron 30.0%
ATAGTATGACAATTTGTCCA+TGG - chr3_4:78487381-78487400 None:intergenic 30.0%
!! AAGCAAATAGAGCTTTAGAT+TGG + chr3_4:78487407-78487426 Msa0524940:intron 30.0%
AGGTATTAACTACTAACCAA+CGG + chr3_4:78487452-78487471 Msa0524940:intron 30.0%
!! GGAGTGTTAATTATTGCTTT+TGG - chr3_4:78487771-78487790 None:intergenic 30.0%
!!! GAGTTTTTAAGGCAAAAAGT+TGG - chr3_4:78487818-78487837 None:intergenic 30.0%
! AGAAGTTTTTATTGACAACC+AGG - chr3_4:78488014-78488033 None:intergenic 30.0%
TCAGGATATTGTTTCAGTAT+AGG - chr3_4:78488190-78488209 None:intergenic 30.0%
ATTGAGATATGTTAAAGGCA+AGG - chr3_4:78488311-78488330 None:intergenic 30.0%
CTTACAGCAAATAAAATGTC+TGG + chr3_4:78488391-78488410 Msa0524940:intron 30.0%
CTGCCAAAAAAAATATGCAA+AGG - chr3_4:78488572-78488591 None:intergenic 30.0%
!! GGTCTTATGACATATTTTCT+TGG - chr3_4:78488631-78488650 None:intergenic 30.0%
!!! TGCTTGTTTTAACCCATAAA+GGG + chr3_4:78488864-78488883 Msa0524940:intron 30.0%
CTATTGAAAAAAGCCCTTTA+TGG - chr3_4:78488880-78488899 None:intergenic 30.0%
!!! GTCAAATCAGCTTTTTTGAA+TGG - chr3_4:78488976-78488995 None:intergenic 30.0%
CAGATTAGACACAATTAGAT+TGG - chr3_4:78489046-78489065 None:intergenic 30.0%
CAATCTAATTGTGTCTAATC+TGG + chr3_4:78489044-78489063 Msa0524940:intron 30.0%
!! AAAGGGTATGCACAAATTTT+TGG - chr3_4:78489102-78489121 None:intergenic 30.0%
GAAAAGTCATTGGAGTTAAA+TGG - chr3_4:78489188-78489207 None:intergenic 30.0%
AAAATGGAAAAATGCAATGG+AGG - chr3_4:78489271-78489290 None:intergenic 30.0%
! TCCATTGCATTTTTCCATTT+TGG + chr3_4:78489270-78489289 Msa0524940:intron 30.0%
TCCAAAATGGAAAAATGCAA+TGG - chr3_4:78489274-78489293 None:intergenic 30.0%
TAATTCATTCAGACACAACT+CGG + chr3_4:78489398-78489417 Msa0524940:intron 30.0%
TCTAGTTATAGTCAGTGTTT+CGG + chr3_4:78489524-78489543 Msa0524940:intron 30.0%
! ACAACCAAACACTTTAAGAA+AGG + chr3_4:78489665-78489684 Msa0524940:intron 30.0%
! CTAACCTTTCTTAAAGTGTT+TGG - chr3_4:78489672-78489691 None:intergenic 30.0%
! ACTTTAAGAAAGGTTAGTGA+AGG + chr3_4:78489675-78489694 Msa0524940:intron 30.0%
!!! ATAAAACTCCTTTTGAAGCA+TGG - chr3_4:78489713-78489732 None:intergenic 30.0%
!! AGTTTTATCTTGTAAAGCCT+TGG + chr3_4:78489725-78489744 Msa0524940:intron 30.0%
! GGAATTGCCTAAACAATTTT+GGG - chr3_4:78489796-78489815 None:intergenic 30.0%
! AGGAATTGCCTAAACAATTT+TGG - chr3_4:78489797-78489816 None:intergenic 30.0%
! AAATAGATCAGTAATGGAGA+TGG - chr3_4:78489841-78489860 None:intergenic 30.0%
AAGGAGAAATAGATCAGTAA+TGG - chr3_4:78489847-78489866 None:intergenic 30.0%
AACAAAATGGAGTTAGTGAA+AGG - chr3_4:78489866-78489885 None:intergenic 30.0%
! TTCACTAACTCCATTTTGTT+CGG + chr3_4:78489866-78489885 Msa0524940:intron 30.0%
!!! AATTTATTTTGCGAAGAAGC+TGG - chr3_4:78489924-78489943 None:intergenic 30.0%
!! CAATTTCTAAGGTCTGATAA+TGG - chr3_4:78489972-78489991 None:intergenic 30.0%
AGACCTTAGAAATTGAATCT+TGG + chr3_4:78489977-78489996 Msa0524940:intron 30.0%
!! AATGAGTTGAAGCTTTTTAG+TGG + chr3_4:78490172-78490191 Msa0524940:intron 30.0%
!!! TTCTGTTTTGTTTACCAAAC+TGG + chr3_4:78490222-78490241 Msa0524940:intron 30.0%
!! AGCAGATTTTGATCAATATC+AGG + chr3_4:78490539-78490558 Msa0524940:intron 30.0%
TATATTCCTGCAAAAGGAAA+AGG - chr3_4:78490623-78490642 None:intergenic 30.0%
CATATCTCAAAAGTCAGAAT+TGG - chr3_4:78490656-78490675 None:intergenic 30.0%
!! TGGCTTTAAATCTTTGAAGA+TGG + chr3_4:78490679-78490698 Msa0524940:intron 30.0%
!!! TGGTTTTATCATATGTCATG+TGG + chr3_4:78490699-78490718 Msa0524940:intron 30.0%
TGAAGAAGATCAAATGTTTG+TGG - chr3_4:78490786-78490805 None:intergenic 30.0%
! TTTTACCTCTATCTTTGCTT+TGG + chr3_4:78490978-78490997 Msa0524940:intron 30.0%
TTTCTATTGCAAACAAGGTT+AGG - chr3_4:78491243-78491262 None:intergenic 30.0%
ATTGCTTTCTATTGCAAACA+AGG - chr3_4:78491248-78491267 None:intergenic 30.0%
AGAAATATGGGACTATTTGA+AGG - chr3_4:78491383-78491402 None:intergenic 30.0%
! GAAAACATTTTGTGAAACAC+AGG + chr3_4:78491432-78491451 Msa0524940:intron 30.0%
AACTTCATAATCCTCTTCAA+CGG + chr3_4:78491546-78491565 Msa0524940:intron 30.0%
AATGAAACAGAAACTCAAGT+CGG - chr3_4:78492024-78492043 None:intergenic 30.0%
! TGAGTTTCTGTTTCATTTTC+TGG + chr3_4:78492027-78492046 Msa0524940:intron 30.0%
!!! TGTTTTGCATATTTTGACCA+TGG + chr3_4:78492426-78492445 Msa0524940:intron 30.0%
ATAAAACCAACTATCTGTCA+TGG - chr3_4:78492473-78492492 None:intergenic 30.0%
ACCACTAAAGAGTTAAAAGA+GGG - chr3_4:78492558-78492577 None:intergenic 30.0%
AACCACTAAAGAGTTAAAAG+AGG - chr3_4:78492559-78492578 None:intergenic 30.0%
!!! CTTGTTTCTTGTTTTTTAGG+TGG + chr3_4:78492640-78492659 Msa0524940:intron 30.0%
!!! TGTTTCTTGTTTTTTAGGTG+GGG + chr3_4:78492642-78492661 Msa0524940:intron 30.0%
! AAAGCGTTATTTATCTACTC+TGG + chr3_4:78492787-78492806 Msa0524940:intron 30.0%
AAGCAAATAGCTGTAGAAAT+AGG - chr3_4:78492872-78492891 None:intergenic 30.0%
ACAGCTATTTGCTTATGATA+CGG + chr3_4:78492878-78492897 Msa0524940:intron 30.0%
!!! AACTTTGAAACCCTTTTGAT+TGG + chr3_4:78493429-78493448 Msa0524940:CDS 30.0%
! CTTTGTAATCCTGTTCTTTT+TGG + chr3_4:78493922-78493941 Msa0524940:three_prime_UTR 30.0%
AGTCAATTTCCAAAAAGAAC+AGG - chr3_4:78493934-78493953 None:intergenic 30.0%
!! AAGTTGATTTTTGTTGAGCA+AGG + chr3_4:78493982-78494001 Msa0524940:three_prime_UTR 30.0%
ACAGCAACACTACACAAAAA+GGG + chr3_4:78486117-78486136 Msa0524940:five_prime_UTR 35.0%
!! GACAGTTTGTTTCAAGTTTG+AGG - chr3_4:78486288-78486307 None:intergenic 35.0%
! CTCTTTTGTCATCAAAGAGT+TGG - chr3_4:78486396-78486415 None:intergenic 35.0%
! CTCTTTGATGACAAAAGAGA+TGG + chr3_4:78486397-78486416 Msa0524940:CDS 35.0%
! TTCAAATTTAGGGTCTCATG+AGG + chr3_4:78486432-78486451 Msa0524940:CDS 35.0%
CATGAGGATTACTATTATCC+TGG + chr3_4:78486448-78486467 Msa0524940:CDS 35.0%
GAATTAGAATCAGAAGGGTT+TGG - chr3_4:78486526-78486545 None:intergenic 35.0%
GATTCTAATTCCCCTGAAAA+TGG + chr3_4:78486535-78486554 Msa0524940:CDS 35.0%
! ATTTGAGCCTAATGGTGTTA+CGG + chr3_4:78486618-78486637 Msa0524940:CDS 35.0%
CTACACAACCTTCTAATAGA+AGG - chr3_4:78486721-78486740 None:intergenic 35.0%
TCTATTAGAAGGTTGTGTAG+TGG + chr3_4:78486721-78486740 Msa0524940:CDS 35.0%
GACTATTAGGACTCATTTGA+TGG + chr3_4:78486789-78486808 Msa0524940:CDS 35.0%
TATTAGGACTCATTTGATGG+TGG + chr3_4:78486792-78486811 Msa0524940:CDS 35.0%
! ATTAGGACTCATTTGATGGT+GGG + chr3_4:78486793-78486812 Msa0524940:CDS 35.0%
AATATCCTGGAAAACATCAG+CGG - chr3_4:78486836-78486855 None:intergenic 35.0%
! TATGAAAACTGATGGATGGA+AGG + chr3_4:78486855-78486874 Msa0524940:CDS 35.0%
! ATGAAAACTGATGGATGGAA+GGG + chr3_4:78486856-78486875 Msa0524940:CDS 35.0%
!! TGATACTTGGTTGTTTTCAG+TGG + chr3_4:78486992-78487011 Msa0524940:intron 35.0%
!!! TGGTGTTTTGATAATGTTGC+TGG + chr3_4:78487012-78487031 Msa0524940:intron 35.0%
ACAAAAACTATACCGAGCAT+TGG - chr3_4:78487238-78487257 None:intergenic 35.0%
ACAAAATTGTGTGGTTAAGC+AGG + chr3_4:78487270-78487289 Msa0524940:intron 35.0%
CAACCATCTCTATATCTACA+AGG - chr3_4:78487316-78487335 None:intergenic 35.0%
GGTATTAACTACTAACCAAC+GGG + chr3_4:78487453-78487472 Msa0524940:intron 35.0%
! AAGAGTACGTTGAAATGGAA+TGG + chr3_4:78487543-78487562 Msa0524940:intron 35.0%
AGAGTACGTTGAAATGGAAT+GGG + chr3_4:78487544-78487563 Msa0524940:intron 35.0%
AACTACATCACCACTAAACT+AGG + chr3_4:78487634-78487653 Msa0524940:intron 35.0%
ATAAGTGGTACCTACACTTT+AGG - chr3_4:78487687-78487706 None:intergenic 35.0%
!! TCAGCAAGTTCGAGTTTTTA+AGG - chr3_4:78487829-78487848 None:intergenic 35.0%
! TTTGGTTTATTGCAAGTCAG+AGG - chr3_4:78487888-78487907 None:intergenic 35.0%
TTAAGAGAGATGCAGCAAAA+TGG - chr3_4:78487920-78487939 None:intergenic 35.0%
TATTGTTTCAGTATAGGCTC+TGG - chr3_4:78488184-78488203 None:intergenic 35.0%
TGTCAAAATTTCAAGCTGTG+TGG - chr3_4:78488262-78488281 None:intergenic 35.0%
! GTTAAAGGCAAGGTTGATTA+TGG - chr3_4:78488301-78488320 None:intergenic 35.0%
!!! AACTTCTCCTTTTGGTTCAT+TGG + chr3_4:78488499-78488518 Msa0524940:intron 35.0%
ATTGAGAAAATTCCAGATGG+AGG - chr3_4:78488545-78488564 None:intergenic 35.0%
! GCATTTGAAATGACAGATCT+TGG - chr3_4:78488652-78488671 None:intergenic 35.0%
!!! GTTGATGATCTTTTAGTGAC+TGG - chr3_4:78488721-78488740 None:intergenic 35.0%
!!! GTGCTTGTTTTAACCCATAA+AGG + chr3_4:78488863-78488882 Msa0524940:intron 35.0%
!! AAGCTGATTTGACATCTAAC+TGG + chr3_4:78488983-78489002 Msa0524940:intron 35.0%
ATTGTGTCTAATCTGGATAC+AGG + chr3_4:78489051-78489070 Msa0524940:intron 35.0%
AGAACAAAGCTCAATGTTGA+TGG - chr3_4:78489159-78489178 None:intergenic 35.0%
CCTCAAGATAGAAAAGTCAT+TGG - chr3_4:78489198-78489217 None:intergenic 35.0%
! CCAATGACTTTTCTATCTTG+AGG + chr3_4:78489195-78489214 Msa0524940:intron 35.0%
AAAAAACAAAACATGGGAGC+TGG - chr3_4:78489229-78489248 None:intergenic 35.0%
AAGCACGAAAAGATCCAAAA+TGG - chr3_4:78489287-78489306 None:intergenic 35.0%
! CTTAGAGATCCAGATGTTTT+CGG + chr3_4:78489456-78489475 Msa0524940:intron 35.0%
AAGAATCTACCGAAAACATC+TGG - chr3_4:78489468-78489487 None:intergenic 35.0%
!! ACTTGACAAAAAAGCACTTC+CGG - chr3_4:78489607-78489626 None:intergenic 35.0%
!! TTGTTTTGCACATGTTCCAA+AGG - chr3_4:78489643-78489662 None:intergenic 35.0%
TACTCATACCATGCTTCAAA+AGG + chr3_4:78489702-78489721 Msa0524940:intron 35.0%
TTATCTTGTAAAGCCTTGGT+TGG + chr3_4:78489729-78489748 Msa0524940:intron 35.0%
! TAAACAATTTTGGGCAGAAG+CGG - chr3_4:78489787-78489806 None:intergenic 35.0%
TAGATGTATGTTGCATGAGA+AGG - chr3_4:78489817-78489836 None:intergenic 35.0%
! TCACTAACTCCATTTTGTTC+GGG + chr3_4:78489867-78489886 Msa0524940:intron 35.0%
GCTCCAAGATTCAATTTCTA+AGG - chr3_4:78489983-78490002 None:intergenic 35.0%
CTTGAAATTCAAGCATGAAG+TGG - chr3_4:78490051-78490070 None:intergenic 35.0%
ACGACTTTACAAGAATGTGT+TGG - chr3_4:78490082-78490101 None:intergenic 35.0%
TATAGGCTACCTTGTATTGA+TGG + chr3_4:78490119-78490138 Msa0524940:intron 35.0%
CAAAGAACTCCATCAATACA+AGG - chr3_4:78490131-78490150 None:intergenic 35.0%
! TGTATTGATGGAGTTCTTTG+AGG + chr3_4:78490131-78490150 Msa0524940:intron 35.0%
TTCCATTTCCCAAAACTGTT+TGG - chr3_4:78490202-78490221 None:intergenic 35.0%
AAGAAGAAAGACATGTCAAG+AGG - chr3_4:78490290-78490309 None:intergenic 35.0%
!! ACTGACTTGAGTGAAATAAG+CGG + chr3_4:78490370-78490389 Msa0524940:intron 35.0%
CTTCTCATTTGATCCAATTG+AGG - chr3_4:78490405-78490424 None:intergenic 35.0%
ATTCTTAGGGTCAAAATGAG+AGG - chr3_4:78490434-78490453 None:intergenic 35.0%
GATCAAAATCTGCTAAGTGT+TGG - chr3_4:78490533-78490552 None:intergenic 35.0%
ATCGTAATTTCAACGAGTTC+AGG - chr3_4:78490596-78490615 None:intergenic 35.0%
TGAACTCGTTGAAATTACGA+TGG + chr3_4:78490595-78490614 Msa0524940:intron 35.0%
TCAAAAGTCAGAATTGGCAA+CGG - chr3_4:78490650-78490669 None:intergenic 35.0%
!!! CTGACTTTTGAGATATGAGT+TGG + chr3_4:78490659-78490678 Msa0524940:intron 35.0%
ATTGATGCTTCATATCTCTC+AGG + chr3_4:78491160-78491179 Msa0524940:intron 35.0%
ATTTGAAGGAAGAATACGCA+GGG - chr3_4:78491369-78491388 None:intergenic 35.0%
TATTTGAAGGAAGAATACGC+AGG - chr3_4:78491370-78491389 None:intergenic 35.0%
!!! TGTTTTGAGGGTCATAATTC+TGG + chr3_4:78491408-78491427 Msa0524940:intron 35.0%
ATCACAAGGAGAGAAAAACT+CGG - chr3_4:78491486-78491505 None:intergenic 35.0%
GGCTCAGTTAAAATATCACA+AGG - chr3_4:78491500-78491519 None:intergenic 35.0%
!!! GTGATATTTTAACTGAGCCA+TGG + chr3_4:78491501-78491520 Msa0524940:intron 35.0%
!!! TATTTTAACTGAGCCATGGT+AGG + chr3_4:78491505-78491524 Msa0524940:intron 35.0%
! GTTTCAGTTTCCATTTTCAC+AGG + chr3_4:78491670-78491689 Msa0524940:intron 35.0%
!! GTGCCAATTTGTTGGTTATT+TGG + chr3_4:78491714-78491733 Msa0524940:intron 35.0%
! AAGAGTACGTTGAAATGGAA+TGG + chr3_4:78487543-78487562 Msa0524940:intron 35.0%
AGAGTACGTTGAAATGGAAT+GGG + chr3_4:78487544-78487563 Msa0524940:intron 35.0%
AACTACATCACCACTAAACT+AGG + chr3_4:78487634-78487653 Msa0524940:intron 35.0%
ATAAGTGGTACCTACACTTT+AGG - chr3_4:78487687-78487706 None:intergenic 35.0%
GAAGGAAAATCAGCAAATGA+TGG - chr3_4:78492166-78492185 None:intergenic 35.0%
! TTTTCCTTCAAACCTGTTTC+TGG + chr3_4:78492177-78492196 Msa0524940:intron 35.0%
TATACCAGAAACAGGTTTGA+AGG - chr3_4:78492184-78492203 None:intergenic 35.0%
TCACTAACACATACAGGTAA+GGG - chr3_4:78492388-78492407 None:intergenic 35.0%
!!! GTTTCTTGTTTTTTAGGTGG+GGG + chr3_4:78492643-78492662 Msa0524940:intron 35.0%
GGGGGTCTTAAATGTATAAA+TGG + chr3_4:78492661-78492680 Msa0524940:intron 35.0%
AAATGTATAAATGGCCCATC+AGG + chr3_4:78492670-78492689 Msa0524940:intron 35.0%
TGATTAGTGATATTGCAGAG+AGG + chr3_4:78493225-78493244 Msa0524940:intron 35.0%
! TTATTTTCATGAACGCGTCA+AGG - chr3_4:78493266-78493285 None:intergenic 35.0%
GGAATAACTCCAATAAGACT+AGG - chr3_4:78493330-78493349 None:intergenic 35.0%
! AAGTAATTGGTAGCCGAATA+TGG - chr3_4:78493351-78493370 None:intergenic 35.0%
AAGACAGGTCTACAAAAATG+TGG + chr3_4:78493536-78493555 Msa0524940:CDS 35.0%
TTGTTCTAGTATGCTCAGAA+GGG - chr3_4:78493568-78493587 None:intergenic 35.0%
TGAGCATACTAGAACAAGAA+GGG + chr3_4:78493571-78493590 Msa0524940:CDS 35.0%
GATATTGATAGATAACGACG+AGG + chr3_4:78493686-78493705 Msa0524940:CDS 35.0%
CACAGCAACACTACACAAAA+AGG + chr3_4:78486116-78486135 Msa0524940:five_prime_UTR 40.0%
CAGCAACACTACACAAAAAG+GGG + chr3_4:78486118-78486137 Msa0524940:five_prime_UTR 40.0%
AGCAACACTACACAAAAAGG+GGG + chr3_4:78486119-78486138 Msa0524940:five_prime_UTR 40.0%
TGTCACTCTGTGCTAAGAAA+AGG + chr3_4:78486304-78486323 Msa0524940:five_prime_UTR 40.0%
CTACCCATGAACCAAAAAAC+AGG - chr3_4:78486364-78486383 None:intergenic 40.0%
!!! CTGTTTTTTGGTTCATGGGT+AGG + chr3_4:78486362-78486381 Msa0524940:exon 40.0%
GAGGATTACTATTATCCTGG+TGG + chr3_4:78486451-78486470 Msa0524940:CDS 40.0%
!! TTTGCTAGTGTTGGTCAAGT+GGG + chr3_4:78486478-78486497 Msa0524940:CDS 40.0%
CAGGGGAATTAGAATCAGAA+GGG - chr3_4:78486531-78486550 None:intergenic 40.0%
TCAGGGGAATTAGAATCAGA+AGG - chr3_4:78486532-78486551 None:intergenic 40.0%
! TAGGGTCATCACCATTTTCA+GGG - chr3_4:78486549-78486568 None:intergenic 40.0%
! TTAGGGTCATCACCATTTTC+AGG - chr3_4:78486550-78486569 None:intergenic 40.0%
! CTCTGGAAATTTGAGCCTAA+TGG + chr3_4:78486610-78486629 Msa0524940:CDS 40.0%
!! TTTGAGCCTAATGGTGTTAC+GGG + chr3_4:78486619-78486638 Msa0524940:CDS 40.0%
GGAAGGTGAACAAGTTGTTA+AGG + chr3_4:78486648-78486667 Msa0524940:CDS 40.0%
!! TGCAATTTCTAGAACCACTG+TGG + chr3_4:78486756-78486775 Msa0524940:CDS 40.0%
TGAGTCCTAATAGTCTCCAA+AGG - chr3_4:78486784-78486803 None:intergenic 40.0%
! ATGGATGGAAGGGTTTGTTT+AGG + chr3_4:78486866-78486885 Msa0524940:CDS 40.0%
! TGGATGGAAGGGTTTGTTTA+GGG + chr3_4:78486867-78486886 Msa0524940:CDS 40.0%
! ATTACCTCAATAGCCTTGCT+AGG - chr3_4:78486922-78486941 None:intergenic 40.0%
GGATTTAATGCACCAATGCT+CGG + chr3_4:78487223-78487242 Msa0524940:intron 40.0%
AGAGCTAGGACAAAATTGTG+TGG + chr3_4:78487261-78487280 Msa0524940:intron 40.0%
CCATCTCTATATCTACAAGG+AGG - chr3_4:78487313-78487332 None:intergenic 40.0%
CCTCCTTGTAGATATAGAGA+TGG + chr3_4:78487310-78487329 Msa0524940:intron 40.0%
TACCTTTGAGTCAGAGAACT+GGG - chr3_4:78487437-78487456 None:intergenic 40.0%
ATACCTTTGAGTCAGAGAAC+TGG - chr3_4:78487438-78487457 None:intergenic 40.0%
AAAATTGGCGGGAATAGTGT+TGG + chr3_4:78487482-78487501 Msa0524940:intron 40.0%
!! CGGGAATAGTGTTGGTTATT+TGG + chr3_4:78487490-78487509 Msa0524940:intron 40.0%
ACTGCTTTCTCCTAAAGTGT+AGG + chr3_4:78487674-78487693 Msa0524940:intron 40.0%
TTAACACTCCTCCTTGCTTT+AGG + chr3_4:78487781-78487800 Msa0524940:intron 40.0%
AGTTTGCAGATCCTAAAGCA+AGG - chr3_4:78487795-78487814 None:intergenic 40.0%
!! AAAAACTCGAACTTGCTGAC+AGG + chr3_4:78487830-78487849 Msa0524940:intron 40.0%
GCAAAATGGAGAAGTGACTT+TGG - chr3_4:78487906-78487925 None:intergenic 40.0%
GGCAGCAATTGCAATTTCAA+AGG - chr3_4:78487993-78488012 None:intergenic 40.0%
TTGAAATTGCAATTGCTGCC+TGG + chr3_4:78487993-78488012 Msa0524940:intron 40.0%
! CAGCCGTAAATCAAGTTTTG+TGG - chr3_4:78488084-78488103 None:intergenic 40.0%
!!! TAGGCTCTGGAGTTTTTTCA+TGG - chr3_4:78488171-78488190 None:intergenic 40.0%
! TGGATTCTCTGATAGTGACT+GGG - chr3_4:78488242-78488261 None:intergenic 40.0%
AAGTTGACGAAGGATACTAC+AGG - chr3_4:78488456-78488475 None:intergenic 40.0%
TAGCACACCAATGAACCAAA+AGG - chr3_4:78488509-78488528 None:intergenic 40.0%
TAGTGACTGGAGATGATACA+AGG - chr3_4:78488708-78488727 None:intergenic 40.0%
ACTCTTTACGTGAAACATGC+AGG - chr3_4:78488772-78488791 None:intergenic 40.0%
TGCATGTTTCACGTAAAGAG+TGG + chr3_4:78488771-78488790 Msa0524940:intron 40.0%
TGGGTTAAAACAAGCACCAA+GGG - chr3_4:78488860-78488879 None:intergenic 40.0%
! ATGGGTTAAAACAAGCACCA+AGG - chr3_4:78488861-78488880 None:intergenic 40.0%
ATACCCTTTAACTACGAGTC+TGG + chr3_4:78489113-78489132 Msa0524940:intron 40.0%
ATGGAAAAATGCAATGGAGG+AGG - chr3_4:78489268-78489287 None:intergenic 40.0%
!! AACTCGGTTGTTTGCTTTTC+AGG + chr3_4:78489414-78489433 Msa0524940:intron 40.0%
TTTCAACGAAGACCAGCAAT+GGG - chr3_4:78489496-78489515 None:intergenic 40.0%
ATTTCAACGAAGACCAGCAA+TGG - chr3_4:78489497-78489516 None:intergenic 40.0%
! ATAGTCAGTGTTTCGGTTTG+AGG + chr3_4:78489531-78489550 Msa0524940:intron 40.0%
GGGATACAGTTCACTTTCAA+AGG - chr3_4:78489574-78489593 None:intergenic 40.0%
!! CTTGACAAAAAAGCACTTCC+GGG - chr3_4:78489606-78489625 None:intergenic 40.0%
AGTTTGTCACGCTTAACCTT+TGG + chr3_4:78489624-78489643 Msa0524940:intron 40.0%
! TCAAAATCGACTTCCAACCA+AGG - chr3_4:78489745-78489764 None:intergenic 40.0%
GCTTCTGCCCAAAATTGTTT+AGG + chr3_4:78489786-78489805 Msa0524940:intron 40.0%
!! TCTAAGGTCTGATAATGGCA+AGG - chr3_4:78489967-78489986 None:intergenic 40.0%
!! AAGATGGTGGAAACTCAAAG+TGG - chr3_4:78490005-78490024 None:intergenic 40.0%
AAATTCAAGCATGAAGTGGC+TGG - chr3_4:78490047-78490066 None:intergenic 40.0%
!!! CTCCAAACAGTTTTGGGAAA+TGG + chr3_4:78490197-78490216 Msa0524940:intron 40.0%
! GGCAAATGATCAGAAAGTAC+CGG + chr3_4:78490260-78490279 Msa0524940:intron 40.0%
CTCATTTGATCCAATTGAGG+AGG - chr3_4:78490402-78490421 None:intergenic 40.0%
TCATCTTTGACATCACTGGT+CGG - chr3_4:78490460-78490479 None:intergenic 40.0%
TGTCTCATCTTTGACATCAC+TGG - chr3_4:78490464-78490483 None:intergenic 40.0%
! ATGGTTCCTTTTCCTTTTGC+AGG + chr3_4:78490614-78490633 Msa0524940:intron 40.0%
GGTGTCTATATTCCTGCAAA+AGG - chr3_4:78490629-78490648 None:intergenic 40.0%
CTAAGAGTAGTTCAGAATGC+TGG - chr3_4:78490748-78490767 None:intergenic 40.0%
TTCATCTTGCTCTACAACCT+GGG + chr3_4:78490802-78490821 Msa0524940:intron 40.0%
! CATGAAGCTGTGATTTGCAA+AGG - chr3_4:78490854-78490873 None:intergenic 40.0%
ACTTCCAACTACATGATGCT+TGG + chr3_4:78491012-78491031 Msa0524940:intron 40.0%
! CAAGTCTTTTGTGTTCTCCA+AGG + chr3_4:78491132-78491151 Msa0524940:intron 40.0%
! TGAAGCATCAATAACCACCT+TGG - chr3_4:78491152-78491171 None:intergenic 40.0%
GCAAACAAGGTTAGGTTACT+CGG - chr3_4:78491235-78491254 None:intergenic 40.0%
!! GCAAGTACTGAACTTGATGA+GGG - chr3_4:78491326-78491345 None:intergenic 40.0%
!! TGCAAGTACTGAACTTGATG+AGG - chr3_4:78491327-78491346 None:intergenic 40.0%
TTTGAAGGAAGAATACGCAG+GGG - chr3_4:78491368-78491387 None:intergenic 40.0%
GAGAAAAACTCGGAAAGCAA+AGG - chr3_4:78491476-78491495 None:intergenic 40.0%
ATGGTAGGATTATTCTGCAG+CGG + chr3_4:78491520-78491539 Msa0524940:intron 40.0%
AGTAAGAATGGAGTCTTACC+TGG - chr3_4:78491593-78491612 None:intergenic 40.0%
ACTGCTTTCTCCTAAAGTGT+AGG + chr3_4:78487674-78487693 Msa0524940:intron 40.0%
TGAAGGGTAATCTAGTGCAA+GGG - chr3_4:78492272-78492291 None:intergenic 40.0%
GTCACTAACACATACAGGTA+AGG - chr3_4:78492389-78492408 None:intergenic 40.0%
! AGTGTGTCACTAACACATAC+AGG - chr3_4:78492394-78492413 None:intergenic 40.0%
AAAGAGTTAAAAGAGGGCCA+GGG - chr3_4:78492552-78492571 None:intergenic 40.0%
TAAAGAGTTAAAAGAGGGCC+AGG - chr3_4:78492553-78492572 None:intergenic 40.0%
!! GCCCTCTTTTAACTCTTTAG+TGG + chr3_4:78492554-78492573 Msa0524940:intron 40.0%
!! TGCTCATTGACTTACCTGAT+GGG - chr3_4:78492687-78492706 None:intergenic 40.0%
!! TTGCTCATTGACTTACCTGA+TGG - chr3_4:78492688-78492707 None:intergenic 40.0%
CAATCAATGATGCAGGAACT+GGG - chr3_4:78492947-78492966 None:intergenic 40.0%
!! CTAGTCTTGAGTAGTTCAAG+CGG - chr3_4:78493011-78493030 None:intergenic 40.0%
CAAGACTAGACTAACTATCC+AGG + chr3_4:78493022-78493041 Msa0524940:intron 40.0%
!! TTGCAGAGAGGTGTTTACAA+TGG + chr3_4:78493237-78493256 Msa0524940:intron 40.0%
AGTGTCGTAGGCAAAGTAAT+TGG - chr3_4:78493364-78493383 None:intergenic 40.0%
!! AACCCTTTTGATTGGTTCAG+CGG + chr3_4:78493437-78493456 Msa0524940:CDS 40.0%
! TACTGCAACTTTTCCACTTG+AGG + chr3_4:78493476-78493495 Msa0524940:CDS 40.0%
CTTGTTCTAGTATGCTCAGA+AGG - chr3_4:78493569-78493588 None:intergenic 40.0%
CTGAGCATACTAGAACAAGA+AGG + chr3_4:78493570-78493589 Msa0524940:CDS 40.0%
ACACATGAAAGAGATTCCAG+CGG - chr3_4:78493649-78493668 None:intergenic 40.0%
ATTGATAGATAACGACGAGG+AGG + chr3_4:78493689-78493708 Msa0524940:CDS 40.0%
!! TTTTTCAACCCCTCTGAGAA+TGG + chr3_4:78493819-78493838 Msa0524940:three_prime_UTR 40.0%
ACCAACATTCCATTCTCAGA+GGG - chr3_4:78493831-78493850 None:intergenic 40.0%
AACCAACATTCCATTCTCAG+AGG - chr3_4:78493832-78493851 None:intergenic 40.0%
TGTTTATTTACGTTGCTGCC+AGG + chr3_4:78493855-78493874 Msa0524940:three_prime_UTR 40.0%
ACACTAGCAAACAAACCACC+AGG - chr3_4:78486469-78486488 None:intergenic 45.0%
!! GGTGGTTTGTTTGCTAGTGT+TGG + chr3_4:78486469-78486488 Msa0524940:CDS 45.0%
!! GTTTGCTAGTGTTGGTCAAG+TGG + chr3_4:78486477-78486496 Msa0524940:CDS 45.0%
!! AGTGTTGGTCAAGTGGGAAT+AGG + chr3_4:78486484-78486503 Msa0524940:CDS 45.0%
! GTGTTGGTCAAGTGGGAATA+GGG + chr3_4:78486485-78486504 Msa0524940:CDS 45.0%
! GAATCAGAAGGGTTTGGTTG+TGG - chr3_4:78486520-78486539 None:intergenic 45.0%
! AGGGTCATCACCATTTTCAG+GGG - chr3_4:78486548-78486567 None:intergenic 45.0%
! TTGTGTAGTGGAGCAATTGC+TGG + chr3_4:78486733-78486752 Msa0524940:CDS 45.0%
! TGGCACCTTTGGAGACTATT+AGG + chr3_4:78486776-78486795 Msa0524940:CDS 45.0%
!! CATTTGATGGTGGGAAGTAG+TGG + chr3_4:78486802-78486821 Msa0524940:CDS 45.0%
! TTCTACCGCTGATGTTTTCC+AGG + chr3_4:78486828-78486847 Msa0524940:CDS 45.0%
! GGATGGAAGGGTTTGTTTAG+GGG + chr3_4:78486868-78486887 Msa0524940:CDS 45.0%
! GTGGTTAAGCAGGTTTTGCT+AGG + chr3_4:78487280-78487299 Msa0524940:intron 45.0%
ACCAACGGGACTGTCAAAAT+TGG + chr3_4:78487467-78487486 Msa0524940:intron 45.0%
AACGGGACTGTCAAAATTGG+CGG + chr3_4:78487470-78487489 Msa0524940:intron 45.0%
! CAGGGAAGAGTACGTTGAAA+TGG + chr3_4:78487538-78487557 Msa0524940:intron 45.0%
TCACCACTAAACTAGGAACG+TGG + chr3_4:78487641-78487660 Msa0524940:intron 45.0%
CACCACTAAACTAGGAACGT+GGG + chr3_4:78487642-78487661 Msa0524940:intron 45.0%
ATCCCACGTTCCTAGTTTAG+TGG - chr3_4:78487647-78487666 None:intergenic 45.0%
! TGCTTTTGGACTGCATTACG+TGG - chr3_4:78487757-78487776 None:intergenic 45.0%
TTGCAGATCCTAAAGCAAGG+AGG - chr3_4:78487792-78487811 None:intergenic 45.0%
! TTAGTCTTCCCATGACACAC+TGG + chr3_4:78487965-78487984 Msa0524940:intron 45.0%
CAAAGGATCCAGTGTGTCAT+GGG - chr3_4:78487976-78487995 None:intergenic 45.0%
TCAAAGGATCCAGTGTGTCA+TGG - chr3_4:78487977-78487996 None:intergenic 45.0%
TATGAACTCAGCTTCTGCAG+TGG + chr3_4:78488114-78488133 Msa0524940:intron 45.0%
TTCATGGTGCACAAAGAAGC+AGG - chr3_4:78488155-78488174 None:intergenic 45.0%
!! GATGACATGAAGAGCACTTC+AGG - chr3_4:78488208-78488227 None:intergenic 45.0%
! GTGGATTCTCTGATAGTGAC+TGG - chr3_4:78488243-78488262 None:intergenic 45.0%
CACAATGCATAAAGCGAGAG+AGG + chr3_4:78488365-78488384 Msa0524940:intron 45.0%
GGATACTACAGGAGTCTGAT+CGG - chr3_4:78488445-78488464 None:intergenic 45.0%
!! GGTGCTGATAAAGTTGACGA+AGG - chr3_4:78488466-78488485 None:intergenic 45.0%
GAGAAGTTGAGCAAGGAAGA+TGG - chr3_4:78488487-78488506 None:intergenic 45.0%
CCAAAAGGAGAAGTTGAGCA+AGG - chr3_4:78488494-78488513 None:intergenic 45.0%
! CCTTGCTCAACTTCTCCTTT+TGG + chr3_4:78488491-78488510 Msa0524940:intron 45.0%
! ATTCCAGATGGAGGAGTGTA+AGG - chr3_4:78488536-78488555 None:intergenic 45.0%
GACTGGAGATGATACAAGGT+TGG - chr3_4:78488704-78488723 None:intergenic 45.0%
TAAAACAAGCACCAAGGGCT+TGG - chr3_4:78488855-78488874 None:intergenic 45.0%
ACCTTGCATCACAAATCCCT+CGG + chr3_4:78488918-78488937 Msa0524940:intron 45.0%
TTAGCAGTTGCTGCTCAAAG+GGG - chr3_4:78489021-78489040 None:intergenic 45.0%
GTTAGCAGTTGCTGCTCAAA+GGG - chr3_4:78489022-78489041 None:intergenic 45.0%
TGTTAGCAGTTGCTGCTCAA+AGG - chr3_4:78489023-78489042 None:intergenic 45.0%
! GGATACAGGTGCAAAAGTGT+CGG + chr3_4:78489065-78489084 Msa0524940:intron 45.0%
AGGCCAGACTCGTAGTTAAA+GGG - chr3_4:78489119-78489138 None:intergenic 45.0%
AAGGCCAGACTCGTAGTTAA+AGG - chr3_4:78489120-78489139 None:intergenic 45.0%
GAAGATGATCCCTCCATTAG+AGG - chr3_4:78489378-78489397 None:intergenic 45.0%
CTGTATCCCACAAAAATGCC+CGG + chr3_4:78489585-78489604 Msa0524940:intron 45.0%
CCTTACACTCCCGAACAAAA+TGG - chr3_4:78489879-78489898 None:intergenic 45.0%
!! CCATTTTGTTCGGGAGTGTA+AGG + chr3_4:78489876-78489895 Msa0524940:intron 45.0%
CTCATTCACACAGATGTTGC+AGG - chr3_4:78490158-78490177 None:intergenic 45.0%
! AGTGGCTCTCCAAACAGTTT+TGG + chr3_4:78490190-78490209 Msa0524940:intron 45.0%
! GTGGCTCTCCAAACAGTTTT+GGG + chr3_4:78490191-78490210 Msa0524940:intron 45.0%
AACTGCAATGCTTGCCAGTT+TGG - chr3_4:78490239-78490258 None:intergenic 45.0%
! AACTGGCAAGCATTGCAGTT+TGG + chr3_4:78490239-78490258 Msa0524940:intron 45.0%
AGACATGTCAAGAGGTCTAC+CGG - chr3_4:78490282-78490301 None:intergenic 45.0%
AAGTCAGTCCCACTGAACTT+TGG - chr3_4:78490358-78490377 None:intergenic 45.0%
CATCTTTGACATCACTGGTC+GGG - chr3_4:78490459-78490478 None:intergenic 45.0%
CTTCATCTTGCTCTACAACC+TGG + chr3_4:78490801-78490820 Msa0524940:intron 45.0%
ACAACTTGAAGTCAAAGCCC+AGG - chr3_4:78490822-78490841 None:intergenic 45.0%
GTTCAGATGTTGGAGAAGAC+CGG - chr3_4:78490909-78490928 None:intergenic 45.0%
GGTCTTCTCCAACATCTGAA+CGG + chr3_4:78490908-78490927 Msa0524940:intron 45.0%
! TGCGAGCACTGTGGTAAAAT+GGG - chr3_4:78490941-78490960 None:intergenic 45.0%
! TTGCGAGCACTGTGGTAAAA+TGG - chr3_4:78490942-78490961 None:intergenic 45.0%
! ATTTTACCACAGTGCTCGCA+AGG + chr3_4:78490941-78490960 Msa0524940:intron 45.0%
GGCAACCAAAGCAAAGATAG+AGG - chr3_4:78490986-78491005 None:intergenic 45.0%
!! CATGTAGTTGGAAGTACTGC+AGG - chr3_4:78491007-78491026 None:intergenic 45.0%
AGGCAAGATCATGTGGTTGA+AGG - chr3_4:78491049-78491068 None:intergenic 45.0%
GCTTATGAGGCAAGATCATG+TGG - chr3_4:78491056-78491075 None:intergenic 45.0%
AAGAGCAACGAAGGCTTATG+AGG - chr3_4:78491069-78491088 None:intergenic 45.0%
! GTCTTTTGTGTTCTCCAAGG+TGG + chr3_4:78491135-78491154 Msa0524940:intron 45.0%
GCTGCAGAATAATCCTACCA+TGG - chr3_4:78491521-78491540 None:intergenic 45.0%
AAGAATGGAGTCTTACCTGG+AGG - chr3_4:78491590-78491609 None:intergenic 45.0%
ACTCCATTCTTACTGCCCAA+AGG + chr3_4:78491599-78491618 Msa0524940:intron 45.0%
TGACCTTTGGGCAGTAAGAA+TGG - chr3_4:78491605-78491624 None:intergenic 45.0%
TGGGGAGAACTATGACCTTT+GGG - chr3_4:78491617-78491636 None:intergenic 45.0%
ATGGGGAGAACTATGACCTT+TGG - chr3_4:78491618-78491637 None:intergenic 45.0%
TAGTTCTCCCCATCAAAGAC+AGG + chr3_4:78491625-78491644 Msa0524940:intron 45.0%
TTGCTCCTCCTGTCTTTGAT+GGG - chr3_4:78491636-78491655 None:intergenic 45.0%
TCTTACGGGACCTGTGAAAA+TGG - chr3_4:78491683-78491702 None:intergenic 45.0%
CACCAGAGCTATCATCTTAC+GGG - chr3_4:78491697-78491716 None:intergenic 45.0%
GCACCAGAGCTATCATCTTA+CGG - chr3_4:78491698-78491717 None:intergenic 45.0%
!! TAGCTCTGGTGCCAATTTGT+TGG + chr3_4:78491706-78491725 Msa0524940:intron 45.0%
! CAGGGAAGAGTACGTTGAAA+TGG + chr3_4:78487538-78487557 Msa0524940:intron 45.0%
TCACCACTAAACTAGGAACG+TGG + chr3_4:78487641-78487660 Msa0524940:intron 45.0%
CACCACTAAACTAGGAACGT+GGG + chr3_4:78487642-78487661 Msa0524940:intron 45.0%
ATCCCACGTTCCTAGTTTAG+TGG - chr3_4:78487647-78487666 None:intergenic 45.0%
! TGCTTTTGGACTGCATTACG+TGG - chr3_4:78487757-78487776 None:intergenic 45.0%
GAAGGGTAATCTAGTGCAAG+GGG - chr3_4:78492271-78492290 None:intergenic 45.0%
CTGAAGGGTAATCTAGTGCA+AGG - chr3_4:78492273-78492292 None:intergenic 45.0%
TGCTCTCCATGACAGATAGT+TGG + chr3_4:78492464-78492483 Msa0524940:intron 45.0%
TTCCATGCCTTTCATTTCCC+TGG + chr3_4:78492532-78492551 Msa0524940:intron 45.0%
! CGCGCAGAAAATTTGAAGCA+CGG - chr3_4:78492727-78492746 None:intergenic 45.0%
GCAATCAATGATGCAGGAAC+TGG - chr3_4:78492948-78492967 None:intergenic 45.0%
! GTTCCTGCATCATTGATTGC+AGG + chr3_4:78492948-78492967 Msa0524940:CDS 45.0%
CTCCAATAAGACTAGGTGTC+AGG - chr3_4:78493323-78493342 None:intergenic 45.0%
AGCCGCTGAACCAATCAAAA+GGG - chr3_4:78493442-78493461 None:intergenic 45.0%
! TGCAACTTTTCCACTTGAGG+TGG + chr3_4:78493479-78493498 Msa0524940:CDS 45.0%
ACTAGAACAAGAAGGGATCC+AGG + chr3_4:78493578-78493597 Msa0524940:CDS 45.0%
CTAGAACAAGAAGGGATCCA+GGG + chr3_4:78493579-78493598 Msa0524940:CDS 45.0%
GGATCCAGGGTCTATATAGA+GGG + chr3_4:78493592-78493611 Msa0524940:CDS 45.0%
GGCACTAACTTCATGCAACT+AGG - chr3_4:78493624-78493643 None:intergenic 45.0%
AGATAACGACGAGGAGGAAT+AGG + chr3_4:78493695-78493714 Msa0524940:CDS 45.0%
TATGCAGCAGTTCCACAACT+TGG - chr3_4:78493744-78493763 None:intergenic 45.0%
CCAACATTCCATTCTCAGAG+GGG - chr3_4:78493830-78493849 None:intergenic 45.0%
CCAAGACACAATGAAAAGCC+TGG - chr3_4:78493876-78493895 None:intergenic 45.0%
! CCAGGCTTTTCATTGTGTCT+TGG + chr3_4:78493873-78493892 Msa0524940:three_prime_UTR 45.0%
GGTCAAGTGGGAATAGGGTT+TGG + chr3_4:78486490-78486509 Msa0524940:CDS 50.0%
!! CCTAATGGTGTTACGGGCAA+GGG + chr3_4:78486625-78486644 Msa0524940:CDS 50.0%
!! CTAATGGTGTTACGGGCAAG+GGG + chr3_4:78486626-78486645 Msa0524940:CDS 50.0%
!! TAATGGTGTTACGGGCAAGG+GGG + chr3_4:78486627-78486646 Msa0524940:CDS 50.0%
TAGAACCACTGTGGCACCTT+TGG + chr3_4:78486765-78486784 Msa0524940:CDS 50.0%
TGTGCAATGATATCCACCCC+TGG + chr3_4:78487342-78487361 Msa0524940:intron 50.0%
GTGCAATGATATCCACCCCT+GGG + chr3_4:78487343-78487362 Msa0524940:intron 50.0%
TGCAATGATATCCACCCCTG+GGG + chr3_4:78487344-78487363 Msa0524940:intron 50.0%
!! ATGGCTCTAGATAGACCCCA+GGG - chr3_4:78487362-78487381 None:intergenic 50.0%
AGCCCAGTTCTCTGACTCAA+AGG + chr3_4:78487432-78487451 Msa0524940:intron 50.0%
!! GCCAATTTTGACAGTCCCGT+TGG - chr3_4:78487471-78487490 None:intergenic 50.0%
ACGGGACTGTCAAAATTGGC+GGG + chr3_4:78487471-78487490 Msa0524940:intron 50.0%
!! TCGAACTTGCTGACAGGAAG+TGG + chr3_4:78487836-78487855 Msa0524940:intron 50.0%
! TTCTCTGATAGTGACTGGGC+TGG - chr3_4:78488238-78488257 None:intergenic 50.0%
CCTTGCATCACAAATCCCTC+GGG + chr3_4:78488919-78488938 Msa0524940:intron 50.0%
ATATATGTGGAGCAGCCCGA+GGG - chr3_4:78488937-78488956 None:intergenic 50.0%
! AGCCTTGTGCCTCTAATGGA+GGG + chr3_4:78489366-78489385 Msa0524940:intron 50.0%
! ATCCCTCCATTAGAGGCACA+AGG - chr3_4:78489371-78489390 None:intergenic 50.0%
GATTCTTCCAGTCCCATTGC+TGG + chr3_4:78489481-78489500 Msa0524940:intron 50.0%
! GCACTTCCGGGCATTTTTGT+GGG - chr3_4:78489594-78489613 None:intergenic 50.0%
! AGCACTTCCGGGCATTTTTG+TGG - chr3_4:78489595-78489614 None:intergenic 50.0%
GAACTTTGGCACAAGCGACT+CGG - chr3_4:78490344-78490363 None:intergenic 50.0%
TCGCTTGTGCCAAAGTTCAG+TGG + chr3_4:78490346-78490365 Msa0524940:intron 50.0%
CGCTTGTGCCAAAGTTCAGT+GGG + chr3_4:78490347-78490366 Msa0524940:intron 50.0%
CACTGGTCGGGAGATTCTTA+GGG - chr3_4:78490447-78490466 None:intergenic 50.0%
TCACTGGTCGGGAGATTCTT+AGG - chr3_4:78490448-78490467 None:intergenic 50.0%
! GAATGCTGGCTGATTGACAG+TGG - chr3_4:78490734-78490753 None:intergenic 50.0%
TGCAGCAAGTGCAATCAGCT+TGG - chr3_4:78490878-78490897 None:intergenic 50.0%
CTTCTCCAACATCTGAACGG+TGG + chr3_4:78490911-78490930 Msa0524940:intron 50.0%
GTCATCCACCGTTCAGATGT+TGG - chr3_4:78490919-78490938 None:intergenic 50.0%
CCAGCCAAGCATCATGTAGT+TGG - chr3_4:78491019-78491038 None:intergenic 50.0%
CCAACTACATGATGCTTGGC+TGG + chr3_4:78491016-78491035 Msa0524940:intron 50.0%
AAGAATACGCAGGGGATGAG+AGG - chr3_4:78491360-78491379 None:intergenic 50.0%
GTAGGATTATTCTGCAGCGG+AGG + chr3_4:78491523-78491542 Msa0524940:intron 50.0%
!! CCTGGAGGCTTTGGATGTTT+GGG - chr3_4:78491575-78491594 None:intergenic 50.0%
!! ACCTGGAGGCTTTGGATGTT+TGG - chr3_4:78491576-78491595 None:intergenic 50.0%
TTCTCCCCATCAAAGACAGG+AGG + chr3_4:78491628-78491647 Msa0524940:intron 50.0%
TGCTCCTCCTGTCTTTGATG+GGG - chr3_4:78491635-78491654 None:intergenic 50.0%
GTTGCTCCTCCTGTCTTTGA+TGG - chr3_4:78491637-78491656 None:intergenic 50.0%
GTCCCGTAAGATGATAGCTC+TGG + chr3_4:78491692-78491711 Msa0524940:intron 50.0%
GACAGCCTCTCTACTTATGC+TGG + chr3_4:78492242-78492261 Msa0524940:intron 50.0%
GGCTTCCAGCATAAGTAGAG+AGG - chr3_4:78492250-78492269 None:intergenic 50.0%
CATTCGAAGAGGAAGGACCA+TGG - chr3_4:78492446-78492465 None:intergenic 50.0%
!! TGGAGAGCATTCGAAGAGGA+AGG - chr3_4:78492453-78492472 None:intergenic 50.0%
!! GTCATGGAGAGCATTCGAAG+AGG - chr3_4:78492457-78492476 None:intergenic 50.0%
AAGAGGGCCAGGGAAATGAA+AGG - chr3_4:78492542-78492561 None:intergenic 50.0%
AAGAACCTATCCGCAAAGCC+TGG + chr3_4:78492906-78492925 Msa0524940:CDS 50.0%
TGATGCAGGAACTGGGAGTT+TGG - chr3_4:78492940-78492959 None:intergenic 50.0%
GCACCTGCAATCAATGATGC+AGG - chr3_4:78492954-78492973 None:intergenic 50.0%
AGTTGAACTCACTCCAGCAC+AGG - chr3_4:78492976-78492995 None:intergenic 50.0%
GGTCCTGCAGAACTTTACAG+AGG + chr3_4:78493297-78493316 Msa0524940:CDS 50.0%
AGGCCTCTGTAAAGTTCTGC+AGG - chr3_4:78493303-78493322 None:intergenic 50.0%
!! GGCCTGACACCTAGTCTTAT+TGG + chr3_4:78493318-78493337 Msa0524940:CDS 50.0%
ACTTTGCCTACGACACTCTG+CGG + chr3_4:78493367-78493386 Msa0524940:CDS 50.0%
CAGCCGCTGAACCAATCAAA+AGG - chr3_4:78493443-78493462 None:intergenic 50.0%
!! CTTTTGATTGGTTCAGCGGC+TGG + chr3_4:78493441-78493460 Msa0524940:CDS 50.0%
GCTCGCAAGCAAATGCAAGT+TGG + chr3_4:78493501-78493520 Msa0524940:CDS 50.0%
! ATGCAAGTTGGAGCTCTCAG+TGG + chr3_4:78493513-78493532 Msa0524940:CDS 50.0%
GGGATCCAGGGTCTATATAG+AGG + chr3_4:78493591-78493610 Msa0524940:CDS 50.0%
CAAGCCCTCTATATAGACCC+TGG - chr3_4:78493599-78493618 None:intergenic 50.0%
CAGGGTCTATATAGAGGGCT+TGG + chr3_4:78493597-78493616 Msa0524940:CDS 50.0%
ATGAAAGAGATTCCAGCGGC+TGG - chr3_4:78493645-78493664 None:intergenic 50.0%
TTTCCACCGAAGCCAAGTTG+TGG + chr3_4:78493729-78493748 Msa0524940:three_prime_UTR 50.0%
GCAGTTCCACAACTTGGCTT+CGG - chr3_4:78493738-78493757 None:intergenic 50.0%
! CCCCTCTGAGAATGGAATGT+TGG + chr3_4:78493827-78493846 Msa0524940:three_prime_UTR 50.0%
GCTAAGGCTCTTCGTGTGTG+CGG - chr3_4:78486159-78486178 None:intergenic 55.0%
!! GCCTAATGGTGTTACGGGCA+AGG + chr3_4:78486624-78486643 Msa0524940:CDS 55.0%
CCCTTGCCCGTAACACCATT+AGG - chr3_4:78486628-78486647 None:intergenic 55.0%
!! AGTCTCCAAAGGTGCCACAG+TGG - chr3_4:78486773-78486792 None:intergenic 55.0%
TGCGCCTAGCAAGGCTATTG+AGG + chr3_4:78486915-78486934 Msa0524940:CDS 55.0%
!! TGGCTCTAGATAGACCCCAG+GGG - chr3_4:78487361-78487380 None:intergenic 55.0%
!! CATGGCTCTAGATAGACCCC+AGG - chr3_4:78487363-78487382 None:intergenic 55.0%
! CTGGGGTCTATCTAGAGCCA+TGG + chr3_4:78487361-78487380 Msa0524940:intron 55.0%
CTGCCTTACACTCCTCCATC+TGG + chr3_4:78488530-78488549 Msa0524940:intron 55.0%
ATCCTGCTGTACCAAGCCCT+TGG + chr3_4:78488841-78488860 Msa0524940:intron 55.0%
CCCGAGGGATTTGTGATGCA+AGG - chr3_4:78488922-78488941 None:intergenic 55.0%
GATATATGTGGAGCAGCCCG+AGG - chr3_4:78488938-78488957 None:intergenic 55.0%
ATGTGAGCCTTCTTGCTGCG+AGG - chr3_4:78489310-78489329 None:intergenic 55.0%
! CAGCAGCCTTGTGCCTCTAA+TGG + chr3_4:78489362-78489381 Msa0524940:intron 55.0%
! CAGCCTTGTGCCTCTAATGG+AGG + chr3_4:78489365-78489384 Msa0524940:intron 55.0%
ACGAAGACCAGCAATGGGAC+TGG - chr3_4:78489491-78489510 None:intergenic 55.0%
TTGGGCAGAAGCGGCAAACA+CGG - chr3_4:78489778-78489797 None:intergenic 55.0%
! CACTTGCTGCACTTTGCGTC+CGG + chr3_4:78490887-78490906 Msa0524940:intron 55.0%
TTACCACAGTGCTCGCAAGG+TGG + chr3_4:78490944-78490963 Msa0524940:intron 55.0%
TACCACAGTGCTCGCAAGGT+GGG + chr3_4:78490945-78490964 Msa0524940:intron 55.0%
TGCAGGCTCAAGAGCAACGA+AGG - chr3_4:78491078-78491097 None:intergenic 55.0%
TGTTTGGGAGGCCGTTGAAG+AGG - chr3_4:78491560-78491579 None:intergenic 55.0%
!! GGAGGCTTTGGATGTTTGGG+AGG - chr3_4:78491572-78491591 None:intergenic 55.0%
CCCAAACATCCAAAGCCTCC+AGG + chr3_4:78491572-78491591 Msa0524940:intron 55.0%
GGAGTCTTACCTGGAGGCTT+TGG - chr3_4:78491584-78491603 None:intergenic 55.0%
GGCCAGGGAAATGAAAGGCA+TGG - chr3_4:78492537-78492556 None:intergenic 55.0%
TTGATTGCAGGTGCCTGTGC+TGG + chr3_4:78492960-78492979 Msa0524940:CDS 55.0%
!! TGCTTTCCGCAGAGTGTCGT+AGG - chr3_4:78493376-78493395 None:intergenic 55.0%
TGGAGCTCTCAGTGGAAGAC+AGG + chr3_4:78493521-78493540 Msa0524940:CDS 55.0%
ATGAAGTTAGTGCCAGCCGC+TGG + chr3_4:78493630-78493649 Msa0524940:CDS 55.0%
GTTCCACAACTTGGCTTCGG+TGG - chr3_4:78493735-78493754 None:intergenic 55.0%
AAGGCTCTTCGTGTGTGCGG+AGG - chr3_4:78486156-78486175 None:intergenic 60.0%
!! CATTCGGGTTGCGCCTAGCA+AGG + chr3_4:78486906-78486925 Msa0524940:CDS 60.0%
CTCTAGATAGACCCCAGGGG+TGG - chr3_4:78487358-78487377 None:intergenic 60.0%
! CACCAAGGGCTTGGTACAGC+AGG - chr3_4:78488846-78488865 None:intergenic 60.0%
CAGTTGCTGCTCAAAGGGGC+TGG - chr3_4:78489017-78489036 None:intergenic 60.0%
CGTGCTTCCTCGCAGCAAGA+AGG + chr3_4:78489300-78489319 Msa0524940:intron 60.0%
GCGGTCTGCTCCTCCTCAAT+TGG + chr3_4:78490389-78490408 Msa0524940:intron 60.0%
! TACCCACCTTGCGAGCACTG+TGG - chr3_4:78490950-78490969 None:intergenic 60.0%
GCAGGGGATGAGAGGATTCG+AGG - chr3_4:78491352-78491371 None:intergenic 60.0%
GCTCTCCAGGCTTTGCGGAT+AGG - chr3_4:78492914-78492933 None:intergenic 60.0%
GGACTGCTCTCCAGGCTTTG+CGG - chr3_4:78492919-78492938 None:intergenic 60.0%
GGGAGTTTGGACTGCTCTCC+AGG - chr3_4:78492927-78492946 None:intergenic 60.0%
TGCTTGCGAGCCACCTCAAG+TGG - chr3_4:78493492-78493511 None:intergenic 60.0%
! GGTGTTACGGGCAAGGGGGA+AGG + chr3_4:78486631-78486650 Msa0524940:CDS 65.0%
GGCAGAAGCGGCAAACACGG+CGG - chr3_4:78489775-78489794 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78486105 78494056 78486105 ID=Msa0524940;Name=Msa0524940
chr3_4 mRNA 78486105 78494056 78486105 ID=Msa0524940-mRNA-1;Parent=Msa0524940;Name=Msa0524940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=271|0.66|0.75|1|0.66|0.5|4|317|378
chr3_4 exon 78486105 78486936 78486105 ID=Msa0524940-mRNA-1:exon:23297;Parent=Msa0524940-mRNA-1
chr3_4 exon 78492882 78492983 78492882 ID=Msa0524940-mRNA-1:exon:23298;Parent=Msa0524940-mRNA-1
chr3_4 exon 78493243 78494003 78493243 ID=Msa0524940-mRNA-1:exon:23299;Parent=Msa0524940-mRNA-1
chr3_4 exon 78494027 78494056 78494027 ID=Msa0524940-mRNA-1:exon:23300;Parent=Msa0524940-mRNA-1
chr3_4 five_prime_UTR 78486105 78486375 78486105 ID=Msa0524940-mRNA-1:five_prime_utr;Parent=Msa0524940-mRNA-1
chr3_4 CDS 78486376 78486936 78486376 ID=Msa0524940-mRNA-1:cds;Parent=Msa0524940-mRNA-1
chr3_4 CDS 78492882 78492983 78492882 ID=Msa0524940-mRNA-1:cds;Parent=Msa0524940-mRNA-1
chr3_4 CDS 78493243 78493716 78493243 ID=Msa0524940-mRNA-1:cds;Parent=Msa0524940-mRNA-1
chr3_4 three_prime_UTR 78493717 78494003 78493717 ID=Msa0524940-mRNA-1:three_prime_utr;Parent=Msa0524940-mRNA-1
chr3_4 three_prime_UTR 78494027 78494056 78494027 ID=Msa0524940-mRNA-1:three_prime_utr;Parent=Msa0524940-mRNA-1
Gene Sequence

>Msa0524940

ATGGGTAGGAACAAAATCCAACTCTTTGATGACAAAAGAGATGGGTTTTTCTCTGTTTCAAATTTAGGGTCTCATGAGGATTACTATTATCCTGGTGGTTTGTTTGCTAGTGTTGGTCAAGTGGGAATAGGGTTTGGTGTTCCACAACCAAACCCTTCTGATTCTAATTCCCCTGAAAATGGTGATGACCCTAAATTTCCTTTTAGTGAATTATACGTTAAGTATATTCAATCACTCTGGAAATTTGAGCCTAATGGTGTTACGGGCAAGGGGGAAGGTGAACAAGTTGTTAAGGTGAAGAATAAAAATGGTGGGTTTAAGCTCAAGATTAAGATAAGGAATCCTTCTATTAGAAGGTTGTGTAGTGGAGCAATTGCTGGTGCAATTTCTAGAACCACTGTGGCACCTTTGGAGACTATTAGGACTCATTTGATGGTGGGAAGTAGTGGTCATTCTACCGCTGATGTTTTCCAGGATATTATGAAAACTGATGGATGGAAGGGTTTGTTTAGGGGAAATCTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCTATTGAGCTATTTGCTTATGATACGGTAAACAAGAACCTATCCGCAAAGCCTGGAGAGCAGTCCAAACTCCCAGTTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAAGAGGTGTTTACAATGGTCTCCTTGACGCGTTCATGAAAATAATTAAAGAAGAGGGTCCTGCAGAACTTTACAGAGGCCTGACACCTAGTCTTATTGGAGTTATTCCATATTCGGCTACCAATTACTTTGCCTACGACACTCTGCGGAAAGCATACCGAAAAATTTTCAAACAAGAGAAGATCGGCAACTTTGAAACCCTTTTGATTGGTTCAGCGGCTGGTGCTATTTCAAGTACTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCAAATGCAAGTTGGAGCTCTCAGTGGAAGACAGGTCTACAAAAATGTGGTTCATGCCCTTCTGAGCATACTAGAACAAGAAGGGATCCAGGGTCTATATAGAGGGCTTGGACCTAGTTGCATGAAGTTAGTGCCAGCCGCTGGAATCTCTTTCATGTGTTATGAAGCATGCAAGAAGATATTGATAGATAACGACGAGGAGGAATAG
Protein sequence

>Msa0524940

MGRNKIQLFDDKRDGFFSVSNLGSHEDYYYPGGLFASVGQVGIGFGVPQPNPSDSNSPENGDDPKFPFSELYVKYIQSLWKFEPNGVTGKGEGEQVVKVKNKNGGFKLKIKIRNPSIRRLCSGAIAGAISRTTVAPLETIRTHLMVGSSGHSTADVFQDIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQSKLPVPASLIAGACAGRGVYNGLLDAFMKIIKEEGPAELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKQEKIGNFETLLIGSAAGAISSTATFPLEVARKQMQVGALSGRQVYKNVVHALLSILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKKILIDNDEEE*