AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383340 MtrunA17_Chr3g0139021 82.119 453 29 5 1 453 1 401 0.0 667
Msa0383340 MtrunA17_Chr1g0147881 61.635 159 51 5 279 432 178 331 1.09e-56 191
Msa0383340 MtrunA17_Chr1g0147881 43.192 213 84 9 1 179 1 210 4.00e-29 117
Msa0383340 MtrunA17_Chr4g0071521 62.143 140 43 4 281 419 174 304 1.03e-51 177
Msa0383340 MtrunA17_Chr4g0071521 30.469 256 122 9 1 219 1 237 3.21e-13 70.5
Msa0383340 MtrunA17_Chr7g0228941 92.593 81 5 1 339 419 31 110 3.12e-48 161
Msa0383340 MtrunA17_Chr4g0053281 58.871 124 49 1 296 417 200 323 5.28e-42 152
Msa0383340 MtrunA17_Chr5g0401821 59.483 116 46 1 303 417 141 256 6.58e-40 144
Msa0383340 MtrunA17_Chr1g0184691 62.500 80 30 0 338 417 271 350 2.78e-31 123
Msa0383340 MtrunA17_Chr2g0293481 48.454 97 45 2 326 417 228 324 5.48e-24 104
Msa0383340 MtrunA17_Chr2g0284321 52.439 82 38 1 337 417 11 92 9.55e-24 99.0
Msa0383340 MtrunA17_Chr2g0319961 49.462 93 31 2 336 417 50 137 5.51e-23 97.8
Msa0383340 MtrunA17_Chr7g0248691 43.396 106 49 3 312 417 117 211 2.63e-22 97.4
Msa0383340 MtrunA17_Chr8g0379461 40.952 105 55 2 320 417 29 133 3.05e-21 92.4
Msa0383340 MtrunA17_Chr2g0289181 56.250 64 28 0 354 417 8 71 3.12e-21 92.4
Msa0383340 MtrunA17_Chr8g0348311 50.000 80 39 1 338 417 134 212 1.81e-20 92.0
Msa0383340 MtrunA17_Chr7g0270051 43.023 86 40 1 341 417 25 110 2.07e-20 90.5
Msa0383340 MtrunA17_Chr8g0387501 58.333 60 25 0 360 419 129 188 3.41e-18 84.3
Msa0383340 MtrunA17_Chr5g0418781 44.706 85 46 1 336 420 100 183 4.54e-18 84.3
Msa0383340 MtrunA17_Chr2g0288871 48.649 74 38 0 344 417 289 362 1.79e-17 84.7
Msa0383340 MtrunA17_Chr7g0238921 37.615 109 53 3 339 436 106 210 2.41e-17 82.8
Msa0383340 MtrunA17_Chr8g0383351 51.613 62 29 1 356 417 156 216 2.88e-17 80.9
Msa0383340 MtrunA17_Chr1g0202461 43.373 83 46 1 336 417 236 318 2.94e-17 83.2
Msa0383340 MtrunA17_Chr1g0194481 40.217 92 54 1 326 417 124 214 5.22e-17 82.0
Msa0383340 MtrunA17_Chr3g0099641 45.946 74 40 0 344 417 235 308 6.52e-17 82.8
Msa0383340 MtrunA17_Chr2g0322391 47.297 74 39 0 344 417 333 406 6.93e-17 83.2
Msa0383340 MtrunA17_Chr3g0129361 51.613 62 29 1 356 417 140 200 7.98e-17 79.3
Msa0383340 MtrunA17_Chr5g0443131 47.222 72 37 1 347 418 144 214 9.12e-17 80.9
Msa0383340 MtrunA17_Chr7g0270191 38.614 101 60 2 317 417 103 201 9.67e-17 80.5
Msa0383340 MtrunA17_Chr8g0335811 44.706 85 43 3 336 417 127 210 9.81e-17 79.3
Msa0383340 MtrunA17_Chr4g0075201 47.297 74 39 0 344 417 251 324 1.07e-16 82.4
Msa0383340 MtrunA17_Chr7g0270831 45.946 74 40 0 344 417 200 273 2.12e-16 81.3
Msa0383340 MtrunA17_Chr5g0445311 47.297 74 38 1 344 417 348 420 3.73e-16 80.9
Msa0383340 MtrunA17_Chr4g0051881 45.070 71 38 1 347 417 165 234 3.73e-16 79.3
Msa0383340 MtrunA17_Chr1g0150281 52.632 57 27 0 361 417 141 197 4.27e-16 78.6
Msa0383340 MtrunA17_Chr5g0432161 48.052 77 39 1 341 417 402 477 5.08e-16 80.5
Msa0383340 MtrunA17_Chr3g0101131 43.678 87 42 2 344 424 399 484 5.23e-16 80.5
Msa0383340 MtrunA17_Chr3g0106491 47.436 78 40 1 340 417 345 421 7.64e-16 79.7
Msa0383340 MtrunA17_Chr7g0263531 52.239 67 31 1 352 418 353 418 9.45e-16 79.0
Msa0383340 MtrunA17_Chr7g0263531 44.318 88 42 4 356 442 184 265 4.04e-13 70.9
Msa0383340 MtrunA17_Chr2g0294231 45.333 75 40 1 343 417 186 259 1.44e-15 78.2
Msa0383340 MtrunA17_Chr4g0001361 38.947 95 51 2 351 442 150 240 1.49e-15 77.4
Msa0383340 MtrunA17_Chr7g0216891 48.101 79 33 2 341 417 204 276 1.62e-15 79.0
Msa0383340 MtrunA17_Chr4g0060271 47.368 76 36 3 344 417 239 312 1.69e-15 79.0
Msa0383340 MtrunA17_Chr2g0333851 36.047 86 43 1 344 417 141 226 1.95e-15 77.0
Msa0383340 MtrunA17_Chr1g0150801 43.662 71 39 1 347 417 89 158 2.42e-15 73.6
Msa0383340 MtrunA17_Chr7g0218081 53.226 62 28 1 356 417 406 466 2.93e-15 77.8
Msa0383340 MtrunA17_Chr7g0218081 46.053 76 38 3 357 431 224 297 1.44e-13 72.8
Msa0383340 MtrunA17_Chr3g0079691 39.604 101 55 2 322 417 452 551 3.37e-15 78.2
Msa0383340 MtrunA17_Chr3g0079691 47.368 57 28 2 361 417 281 335 2.67e-11 65.9
Msa0383340 MtrunA17_Chr3g0136961 45.455 66 34 1 361 426 139 202 3.49e-15 75.9
Msa0383340 MtrunA17_Chr1g0150271 51.667 60 29 0 358 417 99 158 4.15e-15 75.1
Msa0383340 MtrunA17_Chr8g0387981 40.816 98 46 3 336 422 100 196 4.20e-15 76.6
Msa0383340 MtrunA17_Chr4g0074001 55.000 60 26 1 358 417 357 415 4.91e-15 77.4
Msa0383340 MtrunA17_Chr4g0051181 46.667 75 36 1 343 417 230 300 5.44e-15 77.0
Msa0383340 MtrunA17_Chr4g0068541 44.595 74 40 1 344 417 192 264 9.02e-15 75.9
Msa0383340 MtrunA17_Chr7g0249311 35.821 134 60 5 318 431 330 457 9.72e-15 76.6
Msa0383340 MtrunA17_Chr7g0249311 43.939 66 35 2 356 421 175 238 7.00e-11 64.3
Msa0383340 MtrunA17_Chr5g0418191 37.168 113 53 2 356 451 316 427 1.40e-14 75.5
Msa0383340 MtrunA17_Chr5g0418191 47.761 67 32 3 352 417 142 206 1.55e-11 66.2
Msa0383340 MtrunA17_Chr1g0189391 41.584 101 46 4 329 417 55 154 1.51e-14 74.7
Msa0383340 MtrunA17_Chr2g0302391 41.333 75 44 0 344 418 195 269 1.53e-14 75.5
Msa0383340 MtrunA17_Chr4g0004911 42.857 77 43 1 341 417 317 392 2.13e-14 75.1
Msa0383340 MtrunA17_Chr6g0485431 29.577 213 118 10 222 417 14 211 2.52e-14 74.3
Msa0383340 MtrunA17_Chr7g0249301 46.154 78 38 2 343 417 272 348 7.36e-14 72.8
Msa0383340 MtrunA17_Chr7g0249301 49.123 57 27 2 361 417 63 117 6.19e-11 63.9
Msa0383340 MtrunA17_Chr4g0042831 48.387 62 31 1 356 417 274 334 9.82e-14 72.8
Msa0383340 MtrunA17_Chr7g0275531 42.553 94 46 5 336 424 92 182 1.32e-13 71.6
Msa0383340 MtrunA17_Chr1g0188941 40.260 77 45 1 341 417 32 107 4.44e-13 65.9
Msa0383340 MtrunA17_Chr3g0126391 52.632 57 25 1 361 415 134 190 6.32e-13 69.7
Msa0383340 MtrunA17_Chr7g0243891 32.143 140 83 3 278 417 303 430 6.61e-13 70.9
Msa0383340 MtrunA17_Chr7g0224801 45.161 62 33 1 356 417 89 149 1.49e-12 65.9
Msa0383340 MtrunA17_Chr3g0129321 41.935 62 35 1 357 418 115 175 3.52e-12 65.5
Msa0383340 MtrunA17_Chr8g0383251 44.262 61 33 1 357 417 105 164 3.71e-12 65.1
Msa0383340 MtrunA17_Chr4g0025051 45.614 57 31 0 361 417 336 392 7.27e-12 67.4
Msa0383340 MtrunA17_Chr5g0447701 43.662 71 39 1 347 417 239 308 7.35e-12 67.0
Msa0383340 MtrunA17_Chr4g0025061 40.580 69 40 1 350 417 349 417 1.84e-11 66.2
Msa0383340 MtrunA17_Chr8g0347251 49.123 57 27 1 361 415 137 193 7.08e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383340 AT4G31550.2 63.690 168 52 4 272 434 152 315 4.32e-63 207
Msa0383340 AT4G31550.2 35.907 259 104 9 1 219 1 237 3.58e-30 119
Msa0383340 AT4G31550.1 63.314 169 52 5 272 434 152 316 2.54e-61 202
Msa0383340 AT4G31550.1 39.512 205 82 6 1 179 1 189 4.64e-30 119
Msa0383340 AT2G24570.1 57.558 172 60 6 278 441 154 320 3.38e-53 181
Msa0383340 AT2G24570.1 37.705 244 118 11 1 219 1 235 8.87e-24 102
Msa0383340 AT4G24240.1 51.923 156 58 5 267 417 195 338 2.74e-42 153
Msa0383340 AT4G31550.3 64.912 114 35 3 272 380 152 265 1.13e-37 138
Msa0383340 AT4G31550.3 39.512 205 82 6 1 179 1 189 2.54e-30 119
Msa0383340 AT2G30590.1 58.879 107 41 2 321 424 271 377 6.13e-37 139
Msa0383340 AT2G23320.1 54.867 113 46 3 309 417 186 297 1.32e-36 137
Msa0383340 AT5G28650.1 44.828 174 80 6 248 420 164 322 1.85e-36 137
Msa0383340 AT3G04670.1 45.238 168 74 5 254 420 172 322 3.28e-36 136
Msa0383340 AT4G24240.2 50.420 119 42 5 267 380 195 301 4.43e-24 102
Msa0383340 AT3G58710.2 49.462 93 31 2 336 417 40 127 3.85e-23 99.0
Msa0383340 AT2G34830.1 50.575 87 38 2 336 417 186 272 4.29e-23 101
Msa0383340 AT2G34830.2 50.575 87 38 2 336 417 195 281 4.95e-23 101
Msa0383340 AT1G29280.1 61.017 59 23 0 359 417 73 131 8.55e-23 97.8
Msa0383340 AT4G01250.1 44.898 98 49 1 320 417 93 185 1.28e-22 98.2
Msa0383340 AT1G30650.1 46.392 97 47 2 326 417 178 274 1.77e-22 99.8
Msa0383340 AT3G58710.1 48.387 93 32 2 336 417 41 128 2.26e-22 96.7
Msa0383340 AT5G45050.2 33.503 197 110 8 225 417 1030 1209 4.77e-21 97.1
Msa0383340 AT5G45050.4 33.503 197 110 8 225 417 919 1098 4.84e-21 97.1
Msa0383340 AT5G45050.1 33.503 197 110 8 225 417 1058 1237 4.93e-21 97.1
Msa0383340 AT5G52830.1 51.220 82 36 2 336 417 145 222 8.72e-21 93.6
Msa0383340 AT3G04670.2 43.182 132 57 5 254 384 172 286 7.94e-20 89.7
Msa0383340 AT2G23320.2 53.947 76 30 3 309 380 186 260 1.83e-18 85.5
Msa0383340 AT1G29860.1 37.607 117 70 2 303 417 77 192 2.32e-18 85.5
Msa0383340 AT4G39410.1 46.988 83 40 2 338 417 198 279 3.69e-18 85.5
Msa0383340 AT1G69310.4 45.349 86 45 2 336 420 122 206 8.50e-18 84.0
Msa0383340 AT1G69310.2 45.349 86 45 2 336 420 122 206 8.50e-18 84.0
Msa0383340 AT1G69310.1 45.349 86 45 2 336 420 122 206 8.50e-18 84.0
Msa0383340 AT4G18170.1 41.053 95 50 2 323 417 140 228 1.66e-17 83.6
Msa0383340 AT4G04450.2 42.553 94 54 0 324 417 162 255 1.98e-17 84.7
Msa0383340 AT2G47260.1 40.217 92 54 1 326 417 140 230 2.16e-17 83.6
Msa0383340 AT5G07100.1 37.143 105 64 2 315 418 188 291 4.19e-17 82.4
Msa0383340 AT5G26170.1 41.892 74 42 1 347 420 100 172 4.77e-17 79.3
Msa0383340 AT4G04450.1 42.553 94 54 0 324 417 256 349 5.09e-17 84.0
Msa0383340 AT4G23550.1 51.613 62 30 0 357 418 137 198 7.66e-17 81.6
Msa0383340 AT2G44745.1 44.048 84 43 3 337 417 119 201 1.21e-16 79.3
Msa0383340 AT1G62300.1 47.297 74 39 0 344 417 296 369 1.26e-16 82.8
Msa0383340 AT5G07100.2 37.143 105 64 2 315 418 95 198 1.46e-16 79.0
Msa0383340 AT5G07100.4 37.143 105 64 2 315 418 95 198 1.46e-16 79.0
Msa0383340 AT5G07100.5 37.143 105 64 2 315 418 95 198 1.46e-16 79.0
Msa0383340 AT5G07100.3 37.143 105 64 2 315 418 95 198 1.46e-16 79.0
Msa0383340 AT4G22070.4 47.297 74 39 0 344 417 281 354 1.51e-16 82.4
Msa0383340 AT4G22070.3 47.297 74 39 0 344 417 281 354 1.51e-16 82.4
Msa0383340 AT4G22070.2 47.297 74 39 0 344 417 281 354 1.51e-16 82.4
Msa0383340 AT4G22070.1 47.297 74 39 0 344 417 281 354 1.51e-16 82.4
Msa0383340 AT5G49520.1 45.946 74 39 1 344 417 205 277 1.79e-16 81.6
Msa0383340 AT2G37260.3 53.846 65 29 1 356 420 265 328 2.64e-16 80.5
Msa0383340 AT2G37260.2 53.846 65 29 1 356 420 263 326 2.80e-16 80.5
Msa0383340 AT2G37260.1 53.846 65 29 1 356 420 345 408 3.31e-16 80.9
Msa0383340 AT5G46350.1 46.479 71 37 1 347 417 170 239 3.45e-16 79.7
Msa0383340 AT5G15130.2 43.434 99 42 4 321 417 156 242 4.25e-16 80.9
Msa0383340 AT5G15130.1 43.434 99 42 4 321 417 198 284 4.53e-16 80.9
Msa0383340 AT4G31800.2 37.838 111 63 3 346 454 97 203 5.54e-16 77.8
Msa0383340 AT4G31800.1 37.838 111 63 3 346 454 162 268 1.29e-15 77.8
Msa0383340 AT4G26640.5 47.297 74 38 1 344 417 189 261 1.49e-15 78.6
Msa0383340 AT4G26640.6 47.297 74 38 1 344 417 189 261 1.49e-15 78.6
Msa0383340 AT4G26640.4 47.297 74 38 1 344 417 189 261 1.49e-15 78.6
Msa0383340 AT4G26640.3 47.297 74 38 1 344 417 189 261 1.49e-15 78.6
Msa0383340 AT4G26640.2 47.297 74 38 1 344 417 365 437 1.74e-15 79.3
Msa0383340 AT4G26640.1 47.297 74 38 1 344 417 293 365 1.75e-15 79.0
Msa0383340 AT4G26640.7 47.297 74 38 1 344 417 325 397 1.78e-15 79.0
Msa0383340 AT4G01720.1 47.297 74 39 0 344 417 223 296 2.70e-15 78.6
Msa0383340 AT2G04880.2 46.479 71 37 1 347 417 270 339 2.95e-15 78.2
Msa0383340 AT2G04880.1 46.479 71 37 1 347 417 294 363 3.51e-15 78.2
Msa0383340 AT1G64000.1 49.180 61 30 1 357 417 111 170 5.10e-15 73.9
Msa0383340 AT2G38470.1 45.946 74 39 1 344 417 346 418 5.55e-15 77.4
Msa0383340 AT2G03340.1 46.479 71 37 1 347 417 402 471 6.15e-15 77.4
Msa0383340 AT2G03340.1 46.032 63 31 3 356 417 245 305 7.15e-11 64.7
Msa0383340 AT1G66550.2 38.281 128 66 4 290 415 44 160 6.27e-15 74.7
Msa0383340 AT5G41570.1 41.250 80 46 1 338 417 76 154 6.42e-15 73.2
Msa0383340 AT3G01080.2 51.613 62 29 1 356 417 340 400 7.87e-15 77.0
Msa0383340 AT3G01080.2 43.373 83 44 3 357 438 201 281 5.43e-13 71.2
Msa0383340 AT2G40740.1 44.048 84 43 3 336 415 147 230 1.09e-14 74.7
Msa0383340 AT1G13960.1 46.479 71 37 1 347 417 396 465 1.12e-14 76.6
Msa0383340 AT3G01080.1 51.613 62 29 1 356 417 302 362 1.21e-14 76.3
Msa0383340 AT3G01080.1 43.373 83 44 3 357 438 163 243 8.43e-13 70.5
Msa0383340 AT2G40740.3 44.048 84 43 3 336 415 156 239 1.62e-14 74.3
Msa0383340 AT1G13960.2 46.479 71 37 1 347 417 243 312 2.10e-14 74.7
Msa0383340 AT5G56270.1 45.455 77 41 1 341 417 468 543 2.48e-14 75.9
Msa0383340 AT1G68150.1 45.333 75 37 1 343 417 222 292 3.18e-14 74.3
Msa0383340 AT1G18860.1 52.632 57 27 0 361 417 240 296 3.42e-14 75.1
Msa0383340 AT4G26440.1 41.176 102 53 3 341 442 353 447 3.84e-14 75.1
Msa0383340 AT4G26440.1 46.667 60 29 3 359 417 176 233 8.24e-11 64.7
Msa0383340 AT3G62340.1 42.500 80 45 1 338 417 96 174 4.52e-14 72.8
Msa0383340 AT4G30935.1 51.667 60 28 1 358 417 329 387 4.74e-14 74.3
Msa0383340 AT2G25000.2 47.368 57 30 0 361 417 104 160 6.68e-14 71.2
Msa0383340 AT2G25000.4 47.368 57 30 0 361 417 104 160 6.68e-14 71.2
Msa0383340 AT2G25000.3 47.368 57 30 0 361 417 126 182 1.20e-13 71.2
Msa0383340 AT3G01080.3 43.373 83 44 3 357 438 201 281 1.64e-13 71.6
Msa0383340 AT2G25000.1 47.368 57 30 0 361 417 147 203 1.94e-13 70.9
Msa0383340 AT5G64810.1 39.474 76 45 1 347 422 97 171 3.42e-13 68.6
Msa0383340 AT1G66550.1 38.043 92 47 2 334 415 74 165 3.72e-13 69.7
Msa0383340 AT1G69310.3 41.860 86 44 3 336 420 122 202 3.77e-13 70.1
Msa0383340 AT5G45260.1 32.692 156 89 7 274 417 1116 1267 4.15e-13 72.4
Msa0383340 AT1G80840.1 41.667 60 35 0 358 417 144 203 6.06e-13 69.7
Msa0383340 AT5G43290.1 42.857 77 40 2 342 418 99 171 2.78e-12 67.4
Msa0383340 AT1G66560.1 50.847 59 27 1 359 415 102 160 3.00e-12 67.0
Msa0383340 AT1G80590.1 40.909 88 45 2 361 446 86 168 3.47e-12 66.6
Msa0383340 AT2G46130.1 45.161 62 33 1 356 417 26 86 4.46e-12 63.2
Msa0383340 AT1G55600.1 38.961 77 46 1 341 417 288 363 6.46e-12 67.8
Msa0383340 AT1G69810.2 36.364 99 53 5 344 439 129 220 8.53e-12 66.6
Msa0383340 AT2G21900.1 45.614 57 30 1 361 417 110 165 8.72e-12 64.7
Msa0383340 AT1G69810.1 36.364 99 53 5 344 439 187 278 9.79e-12 67.0
Msa0383340 AT2G30250.1 41.096 73 40 2 345 417 315 384 2.79e-11 65.5
Msa0383340 AT3G01970.1 33.036 112 74 1 306 417 11 121 4.99e-11 61.2
Msa0383340 AT5G13080.1 31.897 116 73 3 307 417 9 123 8.77e-11 60.5

Find 170 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTAGATCTAAGGATTT+AGG 0.160577 3_1:+86232345 None:intergenic
GGGAGTGGGAGCATGGATTT+GGG 0.183729 3_1:-86231053 Msa0383340:CDS
TGGGAGTGGGAGCATGGATT+TGG 0.218214 3_1:-86231054 Msa0383340:CDS
GGATTTAGGGTTAGATTTAA+AGG 0.234283 3_1:+86232359 None:intergenic
TACGTTACAACTAGTATATT+TGG 0.242016 3_1:+86231155 None:intergenic
CTTGGGGATTTCTAGATCTA+AGG 0.245293 3_1:+86232338 None:intergenic
GAAAATGACTTTGAGATTGA+TGG 0.268812 3_1:-86232730 None:intergenic
AATAATTCTGGTTCAGGTTC+AGG 0.270724 3_1:-86231080 Msa0383340:CDS
GTATGGCTCCAAACCGATTA+AGG 0.275343 3_1:-86231362 Msa0383340:CDS
TTTATTTCAGGGGTTATTAT+AGG 0.286785 3_1:-86231235 Msa0383340:intron
TTTCTAGATCTAAGGATTTA+GGG 0.294531 3_1:+86232346 None:intergenic
AAAGGTTGGTTATGGCTCTT+AGG 0.300408 3_1:+86232408 None:intergenic
GGATGTGGTGTTCCCTTAAT+CGG 0.308127 3_1:+86231349 None:intergenic
TTAGTAAAATCGAGAGTTAA+AGG 0.311607 3_1:+86232390 None:intergenic
CAGAATTATTCTCTTGCATT+GGG 0.323224 3_1:+86231093 None:intergenic
CAAGAGAATAATTCTGGTTC+AGG 0.324630 3_1:-86231086 Msa0383340:CDS
AATCACTCCGGCGATGTCTC+TGG 0.334104 3_1:-86231775 Msa0383340:CDS
GTTTGTGGCAGCGGTTGATC+AGG 0.340156 3_1:+86232492 None:intergenic
GGAAGCGAGCGTGGCCTTTA+CGG 0.340610 3_1:+86232535 None:intergenic
GCCGGTGTAATGGCCGGTGA+TGG 0.353361 3_1:+86232023 None:intergenic
ACCCTCACCCCTGCTGTCTC+TGG 0.371044 3_1:-86231844 Msa0383340:CDS
GGAAAACTAAATGTTTCCTT+GGG 0.371745 3_1:+86232321 None:intergenic
CCAATGCAAGAGAATAATTC+TGG 0.372712 3_1:-86231092 Msa0383340:CDS
CTGAGTAGAGGTGGAGGGAG+TGG 0.376016 3_1:+86232467 None:intergenic
TCAGGTTCAGGGAGTGGGAG+TGG 0.382358 3_1:-86231068 Msa0383340:CDS
GGAGTGGGAGCATGGATTTG+GGG 0.385851 3_1:-86231052 Msa0383340:CDS
TGGAAAACTAAATGTTTCCT+TGG 0.386222 3_1:+86232320 None:intergenic
GAGTATTCATGGAGGAAGTA+TGG 0.388070 3_1:-86231379 Msa0383340:CDS
GGTTGATCAGGGGTTGCATT+TGG 0.390158 3_1:+86232504 None:intergenic
CCGGTGTAATGGCCGGTGAT+GGG 0.391889 3_1:+86232024 None:intergenic
CGAGAGTTAAAGGTTGGTTA+TGG 0.401114 3_1:+86232400 None:intergenic
TGTTTACCACGGGAGATAGA+AGG 0.401450 3_1:+86231952 None:intergenic
TGAAGTGGTGGTGGTGGAGG+TGG 0.402228 3_1:+86232444 None:intergenic
AAAATTGTCCAGCTAGGAAA+AGG 0.409042 3_1:-86231199 Msa0383340:CDS
TGGTGTTCCCTTAATCGGTT+TGG 0.409958 3_1:+86231354 None:intergenic
CCAGAATTATTCTCTTGCAT+TGG 0.415510 3_1:+86231092 None:intergenic
GGGTTAGATTTAAAGGTGTA+AGG 0.415786 3_1:+86232366 None:intergenic
ATTTGAAGTGGTGGTGGTGG+AGG 0.418020 3_1:+86232441 None:intergenic
GGGGTGTTTGAGCTAACCTT+AGG 0.419189 3_1:-86231032 Msa0383340:CDS
CGGTGTAATGGCCGGTGATG+GGG 0.429599 3_1:+86232025 None:intergenic
TGGAGGTGGCTGAGTAGAGG+TGG 0.430349 3_1:+86232458 None:intergenic
TACCAGCAGATGAGTATTCA+TGG 0.434617 3_1:-86231390 Msa0383340:CDS
GTGGAGGGAGTGGAAGTTTG+TGG 0.440856 3_1:+86232477 None:intergenic
GAGTGGGAGCATGGATTTGG+GGG 0.443071 3_1:-86231051 Msa0383340:CDS
CACTGGCTTCGCCGGTGTAA+TGG 0.443886 3_1:+86232013 None:intergenic
GAGATAGAAGGGGTGAGGAG+TGG 0.448554 3_1:+86231964 None:intergenic
AACACTGCCGTCGCCGGTGA+TGG 0.454613 3_1:+86232281 None:intergenic
TAAAATCGAGAGTTAAAGGT+TGG 0.454643 3_1:+86232394 None:intergenic
AGAGACATTATTAGCGAAGT+TGG 0.457022 3_1:+86232635 None:intergenic
GGTTTCCCGCTGGAGACAGC+AGG 0.458718 3_1:+86232222 None:intergenic
CAGGTTCAGGGAGTGGGAGT+GGG 0.459229 3_1:-86231067 Msa0383340:CDS
AGGTGGCTGAGTAGAGGTGG+AGG 0.473021 3_1:+86232461 None:intergenic
AAAGATGAGTAAGATGTAAG+AGG 0.475709 3_1:+86231928 None:intergenic
CTCCATGAATACTCATCTGC+TGG 0.476195 3_1:+86231388 None:intergenic
AGAAATGCCACTGCCAGAAA+AGG 0.476227 3_1:-86231735 Msa0383340:intron
CTTGTTCTAATTCCCTCCTA+AGG 0.478049 3_1:+86231016 None:intergenic
ATCACTCCGGCGATGTCTCT+GGG 0.478282 3_1:-86231774 Msa0383340:CDS
TGTTTACCACGGGAGACAGC+GGG 0.481273 3_1:+86232081 None:intergenic
AACGCTTCTATCGCCGGTGA+TGG 0.481498 3_1:+86231894 None:intergenic
CAGGGGTTGCATTTGGATTG+CGG 0.482525 3_1:+86232511 None:intergenic
GAGTCCCGTGCATAAGTTCA+AGG 0.483185 3_1:-86231423 Msa0383340:CDS
TTCAATGACGGCGATGAAAG+AGG 0.483268 3_1:+86231811 None:intergenic
ATAATTCTGGTTCAGGTTCA+GGG 0.485370 3_1:-86231079 Msa0383340:CDS
CGCCGGTGATGGCGGAGGAT+AGG 0.488781 3_1:+86232292 None:intergenic
TTGGGGCTTGATTATGAAGC+TGG 0.489027 3_1:+86231111 None:intergenic
TATGGCTCCAAACCGATTAA+GGG 0.491967 3_1:-86231361 Msa0383340:CDS
GGTGTAATGGCCGGTGATGG+GGG 0.493480 3_1:+86232026 None:intergenic
AGTGTTTCCAATGGCAGACT+TGG 0.497101 3_1:-86232264 Msa0383340:CDS
TGGTGGAGGTGGCTGAGTAG+AGG 0.497676 3_1:+86232455 None:intergenic
CTGGTTCAGGTTCAGGGAGT+GGG 0.498298 3_1:-86231073 Msa0383340:CDS
GCCTTTACGGTGGAGTAAGT+TGG 0.499407 3_1:+86232548 None:intergenic
AGGGAGTGGGAGTGGGAGCA+TGG 0.501157 3_1:-86231060 Msa0383340:CDS
AGTGTCTCCAATGGCAGGCT+AGG 0.503100 3_1:-86232135 Msa0383340:CDS
AGATGGACCAAGTCTGCCAT+TGG 0.504301 3_1:+86232257 None:intergenic
ATTGGAAACACTGGCTTCGC+CGG 0.506348 3_1:+86232005 None:intergenic
AGCTAGGAAAAGGGTGGAGA+AGG 0.508533 3_1:-86231189 Msa0383340:CDS
TGAATTTGAAGTGGTGGTGG+TGG 0.508665 3_1:+86232438 None:intergenic
TCTGGTTCAGGTTCAGGGAG+TGG 0.509914 3_1:-86231074 Msa0383340:CDS
GTGTTTGAGCTAACCTTAGG+AGG 0.513166 3_1:-86231029 Msa0383340:CDS
GATGACATGAATGATGAGTT+AGG 0.513463 3_1:+86232189 None:intergenic
ATAGAAGCGTTTCCAGCGGC+AGG 0.515749 3_1:-86231882 Msa0383340:CDS
GGCTTCGCCGGTGTAATGGC+CGG 0.516112 3_1:+86232017 None:intergenic
ATGGTAGATGGCATTGGACA+TGG 0.516657 3_1:+86232111 None:intergenic
TTTGTGGCAGCGGTTGATCA+GGG 0.520203 3_1:+86232493 None:intergenic
ACATGGACCTAGCCTGCCAT+TGG 0.522173 3_1:+86232128 None:intergenic
AGATGGACCGATCCTGCCGC+TGG 0.527015 3_1:+86231870 None:intergenic
AGTGTTTCCAATGGCAGACT+AGG 0.528173 3_1:-86231994 Msa0383340:CDS
CACCAGAGACAGCAGGGGTG+AGG 0.529492 3_1:+86231842 None:intergenic
GCCGTCGCCGGTGATGGCGG+AGG 0.529845 3_1:+86232287 None:intergenic
GGAGTGGAAGTTTGTGGCAG+CGG 0.530182 3_1:+86232483 None:intergenic
TTCATGTCCTCCGCCATCAC+CGG 0.530650 3_1:-86231907 Msa0383340:CDS
ATTGGAAACACTGCCGTCGC+CGG 0.530836 3_1:+86232275 None:intergenic
ACGGCAGTGTCTCCAATGGC+AGG 0.531858 3_1:-86232140 Msa0383340:CDS
GAAGGGGTGAGGAGTGGAGA+TGG 0.533512 3_1:+86231970 None:intergenic
GCTGGAAACGCTTCTATCGC+CGG 0.535199 3_1:+86231888 None:intergenic
ATCATCAGTCACCTTGGATG+TGG 0.536621 3_1:+86231334 None:intergenic
AGCGTTTCCAGCGGCAGGAT+CGG 0.536745 3_1:-86231877 Msa0383340:CDS
GTTTCCCGCTGGAGACAGCA+GGG 0.539485 3_1:+86232223 None:intergenic
CTCCTATCCTCCGCCATCAC+CGG 0.540008 3_1:-86232294 Msa0383340:CDS
ATGGCGGAGGATAGGAGTGA+TGG 0.540988 3_1:+86232300 None:intergenic
ACCAGAGACAGCAGGGGTGA+GGG 0.543631 3_1:+86231843 None:intergenic
CCCATCACCGGCCATTACAC+CGG 0.545382 3_1:-86232024 Msa0383340:CDS
TCACCCCTGCTGTCTCCAGC+GGG 0.546410 3_1:-86232227 Msa0383340:CDS
GTTTACCACGGGAGATAGAA+GGG 0.547446 3_1:+86231953 None:intergenic
TCTATCGCCGGTGATGGCGG+AGG 0.548144 3_1:+86231900 None:intergenic
ATTGGAGACACTGCCGTCGC+CGG 0.548673 3_1:+86232146 None:intergenic
TGAAAGAGGTGGTTTCCCGC+TGG 0.549473 3_1:+86232212 None:intergenic
GTGGGGATGGTAGATGGCAT+TGG 0.549661 3_1:+86232105 None:intergenic
AGATGGTCCTAGTCTGCCAT+TGG 0.550295 3_1:+86231987 None:intergenic
GGTGGCTGAGTAGAGGTGGA+GGG 0.555049 3_1:+86232462 None:intergenic
AATGATGAGTTAGGTGAAAG+AGG 0.558263 3_1:+86232198 None:intergenic
GATTGCGGCGGAAGCGAGCG+TGG 0.558913 3_1:+86232526 None:intergenic
GGAGGAATTTGAATTTGAAG+TGG 0.561033 3_1:+86232429 None:intergenic
ACTGCCGTCGCCGGTGATGG+CGG 0.561235 3_1:+86232284 None:intergenic
GGTTTACCACCAGAGACAGC+AGG 0.565359 3_1:+86231835 None:intergenic
GGAATTTGAATTTGAAGTGG+TGG 0.567821 3_1:+86232432 None:intergenic
CTCACCCCTGCTGTCTCCAG+CGG 0.569853 3_1:-86232228 Msa0383340:CDS
TCCTCCGCCATCACCGGCGA+CGG 0.570163 3_1:-86232288 Msa0383340:CDS
ATTTGAATTTGAAGTGGTGG+TGG 0.570309 3_1:+86232435 None:intergenic
GCTTCTATCGCCGGTGATGG+CGG 0.573163 3_1:+86231897 None:intergenic
TAGTCTGCCATTGGAAACAC+TGG 0.574513 3_1:+86231996 None:intergenic
GCCGGTGATATCGCGAGCAA+AGG 0.576295 3_1:+86232164 None:intergenic
CACGGGAGATAGAAGGGGTG+AGG 0.577389 3_1:+86231959 None:intergenic
GGTTGGTTATGGCTCTTAGG+AGG 0.578662 3_1:+86232411 None:intergenic
AAATTGTCCAGCTAGGAAAA+GGG 0.578813 3_1:-86231198 Msa0383340:CDS
CTGTTTACCACGGGAGACAG+CGG 0.579258 3_1:+86232080 None:intergenic
TCCAACTTACTCCACCGTAA+AGG 0.584686 3_1:-86232549 Msa0383340:CDS
GTAAGTTGGATAGTTTCTTG+AGG 0.588388 3_1:+86232562 None:intergenic
AGCGAGCGTGGCCTTTACGG+TGG 0.596751 3_1:+86232538 None:intergenic
TTGTGGCAGCGGTTGATCAG+GGG 0.597446 3_1:+86232494 None:intergenic
CTCACCCCTGCTGTCTCTGG+TGG 0.599307 3_1:-86231841 Msa0383340:CDS
GCAGGGGTGAGGGTATAAGA+TGG 0.600551 3_1:+86231853 None:intergenic
CAATCCTTGAACTTATGCAC+GGG 0.601760 3_1:+86231419 None:intergenic
GCCTTTGCTCGCGATATCAC+CGG 0.603472 3_1:-86232165 Msa0383340:CDS
AATGGTGAGATAGAAGAAAG+AGG 0.604400 3_1:+86232057 None:intergenic
GAGGTCTGAAACAGTGATGT+TGG 0.604494 3_1:+86232581 None:intergenic
GCAGTGGCATTTCTTAGATG+CGG 0.605629 3_1:+86231744 None:intergenic
AGAAAGAGGCTGTTTACCAC+GGG 0.608993 3_1:+86232071 None:intergenic
GCAGGGGTGAGAATTTGAGA+TGG 0.611517 3_1:+86232240 None:intergenic
GGCGAAGCCAGTGTTTCCAA+TGG 0.611891 3_1:-86232003 Msa0383340:CDS
TTTACCACGGGAGACAGCGG+GGG 0.612657 3_1:+86232083 None:intergenic
GCTCGCGATATCACCGGCGA+CGG 0.612885 3_1:-86232159 Msa0383340:CDS
GTGGCATTTCTTAGATGCGG+AGG 0.615532 3_1:+86231747 None:intergenic
GTTTACCACCAGAGACAGCA+GGG 0.616141 3_1:+86231836 None:intergenic
TGTAAGAGGCTGTTTACCAC+GGG 0.617465 3_1:+86231942 None:intergenic
GGCGACGGCAGTGTCTCCAA+TGG 0.618204 3_1:-86232144 Msa0383340:CDS
AGAATTATTCTCTTGCATTG+GGG 0.619176 3_1:+86231094 None:intergenic
GTTTACCACGGGAGACAGCG+GGG 0.620522 3_1:+86232082 None:intergenic
GAAAACTAAATGTTTCCTTG+GGG 0.621149 3_1:+86232322 None:intergenic
GCAATCCTTGAACTTATGCA+CGG 0.621816 3_1:+86231418 None:intergenic
AAGAAAGAGGCTGTTTACCA+CGG 0.623906 3_1:+86232070 None:intergenic
ATATTAGAAACTGCCACACA+AGG 0.629159 3_1:-86232672 Msa0383340:CDS
TTAAGGGAACACCACATCCA+AGG 0.631610 3_1:-86231345 Msa0383340:intron
TGTTTGAGCTAACCTTAGGA+GGG 0.631673 3_1:-86231028 Msa0383340:CDS
ATGTAAGAGGCTGTTTACCA+CGG 0.635354 3_1:+86231941 None:intergenic
GGCGACGGCAGTGTTTCCAA+TGG 0.643275 3_1:-86232273 Msa0383340:CDS
CTCACCCCTTCTATCTCCCG+TGG 0.644664 3_1:-86231958 Msa0383340:CDS
GATGAGTTAGGTGAAAGAGG+TGG 0.645788 3_1:+86232201 None:intergenic
TTTCCCGCTGGAGACAGCAG+GGG 0.647086 3_1:+86232224 None:intergenic
AAAAGCTGTCACAATCACTC+CGG 0.649448 3_1:-86231787 Msa0383340:CDS
TTGTCCAGCTAGGAAAAGGG+TGG 0.652692 3_1:-86231195 Msa0383340:CDS
GGCGATAGAAGCGTTTCCAG+CGG 0.654727 3_1:-86231886 Msa0383340:CDS
AAGTGAGTTTAAGCCTTGTG+TGG 0.663342 3_1:+86232659 None:intergenic
CTTAGATCTAGAAATCCCCA+AGG 0.682048 3_1:-86232337 Msa0383340:CDS
GGGTTGCATTTGGATTGCGG+CGG 0.683767 3_1:+86232514 None:intergenic
AATGACGGCGATGAAAGAGG+CGG 0.684940 3_1:+86231814 None:intergenic
TTTACCACGGGAGATAGAAG+GGG 0.691554 3_1:+86231954 None:intergenic
GGGCTTGATTATGAAGCTGG+TGG 0.693764 3_1:+86231114 None:intergenic
TTTACCACCAGAGACAGCAG+GGG 0.764702 3_1:+86231837 None:intergenic
CAGCAGATGAGTATTCATGG+AGG 0.765821 3_1:-86231387 Msa0383340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTGATTTTATTTTTTTT+AGG - chr3_1:86232277-86232296 Msa0383340:CDS 10.0%
!!! TTATTTTTTTTAGGAAAAAT+CGG - chr3_1:86232286-86232305 Msa0383340:CDS 10.0%
!!! GTTTTGATTTTATTTTTTTT+AGG - chr3_1:86232277-86232296 Msa0383340:CDS 10.0%
!!! TTATTTTTTTTAGGAAAAAT+CGG - chr3_1:86232286-86232305 Msa0383340:CDS 10.0%
!!! TAAATTAATTTTACCTTTTC+TGG + chr3_1:86232029-86232048 None:intergenic 15.0%
!! TAAATGACAAATAAAATATG+CGG + chr3_1:86232191-86232210 None:intergenic 15.0%
!! ATTTATTTGAATATGGTAAA+AGG - chr3_1:86232453-86232472 Msa0383340:CDS 15.0%
!!! TAAATTAATTTTACCTTTTC+TGG + chr3_1:86232029-86232048 None:intergenic 15.0%
!! TAAATGACAAATAAAATATG+CGG + chr3_1:86232191-86232210 None:intergenic 15.0%
!! ATTTATTTGAATATGGTAAA+AGG - chr3_1:86232453-86232472 Msa0383340:CDS 15.0%
!! AAATGACAAATAAAATATGC+GGG + chr3_1:86232190-86232209 None:intergenic 20.0%
!! ACCATATTCAAATAAATCAA+CGG + chr3_1:86232450-86232469 None:intergenic 20.0%
!!! TGTTTTGTTTTGTTTATTTC+AGG - chr3_1:86232501-86232520 Msa0383340:CDS 20.0%
!!! GTTTTGTTTTGTTTATTTCA+GGG - chr3_1:86232502-86232521 Msa0383340:CDS 20.0%
!!! TTTTGTTTTGTTTATTTCAG+GGG - chr3_1:86232503-86232522 Msa0383340:CDS 20.0%
!! AAATGACAAATAAAATATGC+GGG + chr3_1:86232190-86232209 None:intergenic 20.0%
!! ACCATATTCAAATAAATCAA+CGG + chr3_1:86232450-86232469 None:intergenic 20.0%
!!! TGTTTTGTTTTGTTTATTTC+AGG - chr3_1:86232501-86232520 Msa0383340:CDS 20.0%
!!! GTTTTGTTTTGTTTATTTCA+GGG - chr3_1:86232502-86232521 Msa0383340:CDS 20.0%
!!! TTTTGTTTTGTTTATTTCAG+GGG - chr3_1:86232503-86232522 Msa0383340:CDS 20.0%
! TTAGTAAAATCGAGAGTTAA+AGG + chr3_1:86231361-86231380 None:intergenic 25.0%
! TTTCTAGATCTAAGGATTTA+GGG + chr3_1:86231405-86231424 None:intergenic 25.0%
!! ATTTCTAGATCTAAGGATTT+AGG + chr3_1:86231406-86231425 None:intergenic 25.0%
! TGTTAATAGTCAACATTCAA+TGG - chr3_1:86232060-86232079 Msa0383340:CDS 25.0%
! AATGACAAATAAAATATGCG+GGG + chr3_1:86232189-86232208 None:intergenic 25.0%
! GGTAAAAGGAATGTTTAATA+AGG - chr3_1:86232467-86232486 Msa0383340:CDS 25.0%
! TTTATTTCAGGGGTTATTAT+AGG - chr3_1:86232513-86232532 Msa0383340:CDS 25.0%
! TACGTTACAACTAGTATATT+TGG + chr3_1:86232596-86232615 None:intergenic 25.0%
! TTAGTAAAATCGAGAGTTAA+AGG + chr3_1:86231361-86231380 None:intergenic 25.0%
! TTTCTAGATCTAAGGATTTA+GGG + chr3_1:86231405-86231424 None:intergenic 25.0%
!! ATTTCTAGATCTAAGGATTT+AGG + chr3_1:86231406-86231425 None:intergenic 25.0%
! TGTTAATAGTCAACATTCAA+TGG - chr3_1:86232060-86232079 Msa0383340:CDS 25.0%
! AATGACAAATAAAATATGCG+GGG + chr3_1:86232189-86232208 None:intergenic 25.0%
! GGTAAAAGGAATGTTTAATA+AGG - chr3_1:86232467-86232486 Msa0383340:CDS 25.0%
! TTTATTTCAGGGGTTATTAT+AGG - chr3_1:86232513-86232532 Msa0383340:CDS 25.0%
! TACGTTACAACTAGTATATT+TGG + chr3_1:86232596-86232615 None:intergenic 25.0%
!!! ATTGATGGATTTTCCAAACA+TGG - chr3_1:86231033-86231052 Msa0383340:CDS 30.0%
TAAAATCGAGAGTTAAAGGT+TGG + chr3_1:86231357-86231376 None:intergenic 30.0%
! GGATTTAGGGTTAGATTTAA+AGG + chr3_1:86231392-86231411 None:intergenic 30.0%
GAAAACTAAATGTTTCCTTG+GGG + chr3_1:86231429-86231448 None:intergenic 30.0%
GGAAAACTAAATGTTTCCTT+GGG + chr3_1:86231430-86231449 None:intergenic 30.0%
TGGAAAACTAAATGTTTCCT+TGG + chr3_1:86231431-86231450 None:intergenic 30.0%
AAAGATGAGTAAGATGTAAG+AGG + chr3_1:86231823-86231842 None:intergenic 30.0%
!! TTTTTAGGAAAAATCGGAAC+AGG - chr3_1:86232292-86232311 Msa0383340:CDS 30.0%
!! GCCGTTGATTTATTTGAATA+TGG - chr3_1:86232446-86232465 Msa0383340:CDS 30.0%
AGAATTATTCTCTTGCATTG+GGG + chr3_1:86232657-86232676 None:intergenic 30.0%
CAGAATTATTCTCTTGCATT+GGG + chr3_1:86232658-86232677 None:intergenic 30.0%
!!! ATTGATGGATTTTCCAAACA+TGG - chr3_1:86231033-86231052 Msa0383340:CDS 30.0%
TAAAATCGAGAGTTAAAGGT+TGG + chr3_1:86231357-86231376 None:intergenic 30.0%
! GGATTTAGGGTTAGATTTAA+AGG + chr3_1:86231392-86231411 None:intergenic 30.0%
GAAAACTAAATGTTTCCTTG+GGG + chr3_1:86231429-86231448 None:intergenic 30.0%
GGAAAACTAAATGTTTCCTT+GGG + chr3_1:86231430-86231449 None:intergenic 30.0%
TGGAAAACTAAATGTTTCCT+TGG + chr3_1:86231431-86231450 None:intergenic 30.0%
AAAGATGAGTAAGATGTAAG+AGG + chr3_1:86231823-86231842 None:intergenic 30.0%
!! TTTTTAGGAAAAATCGGAAC+AGG - chr3_1:86232292-86232311 Msa0383340:CDS 30.0%
!! GCCGTTGATTTATTTGAATA+TGG - chr3_1:86232446-86232465 Msa0383340:CDS 30.0%
AGAATTATTCTCTTGCATTG+GGG + chr3_1:86232657-86232676 None:intergenic 30.0%
CAGAATTATTCTCTTGCATT+GGG + chr3_1:86232658-86232677 None:intergenic 30.0%
! TCTTTTTCCTCATCCATGTT+TGG + chr3_1:86231049-86231068 None:intergenic 35.0%
CATGGATGAGGAAAAAGAAA+AGG - chr3_1:86231051-86231070 Msa0383340:CDS 35.0%
ATATTAGAAACTGCCACACA+AGG - chr3_1:86231076-86231095 Msa0383340:CDS 35.0%
AGAGACATTATTAGCGAAGT+TGG + chr3_1:86231116-86231135 None:intergenic 35.0%
!!! AGTTCAGTGTTTTGAAGAGA+GGG + chr3_1:86231145-86231164 None:intergenic 35.0%
! GTAAGTTGGATAGTTTCTTG+AGG + chr3_1:86231189-86231208 None:intergenic 35.0%
! ATTTGAATTTGAAGTGGTGG+TGG + chr3_1:86231316-86231335 None:intergenic 35.0%
! GGAATTTGAATTTGAAGTGG+TGG + chr3_1:86231319-86231338 None:intergenic 35.0%
GGAGGAATTTGAATTTGAAG+TGG + chr3_1:86231322-86231341 None:intergenic 35.0%
! GGGTTAGATTTAAAGGTGTA+AGG + chr3_1:86231385-86231404 None:intergenic 35.0%
AATGATGAGTTAGGTGAAAG+AGG + chr3_1:86231553-86231572 None:intergenic 35.0%
GATGACATGAATGATGAGTT+AGG + chr3_1:86231562-86231581 None:intergenic 35.0%
AATGGTGAGATAGAAGAAAG+AGG + chr3_1:86231694-86231713 None:intergenic 35.0%
! TGACAGCTTTTCTTCAATGA+CGG + chr3_1:86231952-86231971 None:intergenic 35.0%
!! AATTTTACCTTTTCTGGCAG+TGG + chr3_1:86232023-86232042 None:intergenic 35.0%
TAGTCAACATTCAATGGTCA+CGG - chr3_1:86232066-86232085 Msa0383340:CDS 35.0%
CGTTTGTCGTAAAAAAGACA+AGG - chr3_1:86232135-86232154 Msa0383340:CDS 35.0%
AAATCAATCATCAGTCACCT+TGG + chr3_1:86232423-86232442 None:intergenic 35.0%
TGTCTAAAAATTGTCCAGCT+AGG - chr3_1:86232543-86232562 Msa0383340:CDS 35.0%
AAAATTGTCCAGCTAGGAAA+AGG - chr3_1:86232549-86232568 Msa0383340:CDS 35.0%
AAATTGTCCAGCTAGGAAAA+GGG - chr3_1:86232550-86232569 Msa0383340:CDS 35.0%
CCAGAATTATTCTCTTGCAT+TGG + chr3_1:86232659-86232678 None:intergenic 35.0%
CCAATGCAAGAGAATAATTC+TGG - chr3_1:86232656-86232675 Msa0383340:CDS 35.0%
!! CAAGAGAATAATTCTGGTTC+AGG - chr3_1:86232662-86232681 Msa0383340:CDS 35.0%
!! AATAATTCTGGTTCAGGTTC+AGG - chr3_1:86232668-86232687 Msa0383340:CDS 35.0%
!! ATAATTCTGGTTCAGGTTCA+GGG - chr3_1:86232669-86232688 Msa0383340:CDS 35.0%
! TCTTTTTCCTCATCCATGTT+TGG + chr3_1:86231049-86231068 None:intergenic 35.0%
CATGGATGAGGAAAAAGAAA+AGG - chr3_1:86231051-86231070 Msa0383340:CDS 35.0%
ATATTAGAAACTGCCACACA+AGG - chr3_1:86231076-86231095 Msa0383340:CDS 35.0%
AGAGACATTATTAGCGAAGT+TGG + chr3_1:86231116-86231135 None:intergenic 35.0%
!!! AGTTCAGTGTTTTGAAGAGA+GGG + chr3_1:86231145-86231164 None:intergenic 35.0%
! GTAAGTTGGATAGTTTCTTG+AGG + chr3_1:86231189-86231208 None:intergenic 35.0%
! ATTTGAATTTGAAGTGGTGG+TGG + chr3_1:86231316-86231335 None:intergenic 35.0%
! GGAATTTGAATTTGAAGTGG+TGG + chr3_1:86231319-86231338 None:intergenic 35.0%
GGAGGAATTTGAATTTGAAG+TGG + chr3_1:86231322-86231341 None:intergenic 35.0%
! GGGTTAGATTTAAAGGTGTA+AGG + chr3_1:86231385-86231404 None:intergenic 35.0%
AATGATGAGTTAGGTGAAAG+AGG + chr3_1:86231553-86231572 None:intergenic 35.0%
GATGACATGAATGATGAGTT+AGG + chr3_1:86231562-86231581 None:intergenic 35.0%
AATGGTGAGATAGAAGAAAG+AGG + chr3_1:86231694-86231713 None:intergenic 35.0%
! TGACAGCTTTTCTTCAATGA+CGG + chr3_1:86231952-86231971 None:intergenic 35.0%
!! AATTTTACCTTTTCTGGCAG+TGG + chr3_1:86232023-86232042 None:intergenic 35.0%
TAGTCAACATTCAATGGTCA+CGG - chr3_1:86232066-86232085 Msa0383340:CDS 35.0%
CGTTTGTCGTAAAAAAGACA+AGG - chr3_1:86232135-86232154 Msa0383340:CDS 35.0%
AAATCAATCATCAGTCACCT+TGG + chr3_1:86232423-86232442 None:intergenic 35.0%
TGTCTAAAAATTGTCCAGCT+AGG - chr3_1:86232543-86232562 Msa0383340:CDS 35.0%
AAAATTGTCCAGCTAGGAAA+AGG - chr3_1:86232549-86232568 Msa0383340:CDS 35.0%
AAATTGTCCAGCTAGGAAAA+GGG - chr3_1:86232550-86232569 Msa0383340:CDS 35.0%
CCAGAATTATTCTCTTGCAT+TGG + chr3_1:86232659-86232678 None:intergenic 35.0%
CCAATGCAAGAGAATAATTC+TGG - chr3_1:86232656-86232675 Msa0383340:CDS 35.0%
!! CAAGAGAATAATTCTGGTTC+AGG - chr3_1:86232662-86232681 Msa0383340:CDS 35.0%
!! AATAATTCTGGTTCAGGTTC+AGG - chr3_1:86232668-86232687 Msa0383340:CDS 35.0%
!! ATAATTCTGGTTCAGGTTCA+GGG - chr3_1:86232669-86232688 Msa0383340:CDS 35.0%
! GGATTTTCCAAACATGGATG+AGG - chr3_1:86231039-86231058 Msa0383340:CDS 40.0%
! AAGTGAGTTTAAGCCTTGTG+TGG + chr3_1:86231092-86231111 None:intergenic 40.0%
!!! AGTGTTTTGAAGAGAGGGTT+GGG + chr3_1:86231140-86231159 None:intergenic 40.0%
!!! GAGTTCAGTGTTTTGAAGAG+AGG + chr3_1:86231146-86231165 None:intergenic 40.0%
! AAAGGTTGGTTATGGCTCTT+AGG + chr3_1:86231343-86231362 None:intergenic 40.0%
! CGAGAGTTAAAGGTTGGTTA+TGG + chr3_1:86231351-86231370 None:intergenic 40.0%
! CTTGGGGATTTCTAGATCTA+AGG + chr3_1:86231413-86231432 None:intergenic 40.0%
CTTAGATCTAGAAATCCCCA+AGG - chr3_1:86231411-86231430 Msa0383340:CDS 40.0%
AAGAAAGAGGCTGTTTACCA+CGG + chr3_1:86231681-86231700 None:intergenic 40.0%
ATGTAAGAGGCTGTTTACCA+CGG + chr3_1:86231810-86231829 None:intergenic 40.0%
AAAAGCTGTCACAATCACTC+CGG - chr3_1:86231961-86231980 Msa0383340:CDS 40.0%
CAATCCTTGAACTTATGCAC+GGG + chr3_1:86232332-86232351 None:intergenic 40.0%
GCAATCCTTGAACTTATGCA+CGG + chr3_1:86232333-86232352 None:intergenic 40.0%
TACCAGCAGATGAGTATTCA+TGG - chr3_1:86232358-86232377 Msa0383340:CDS 40.0%
GAGTATTCATGGAGGAAGTA+TGG - chr3_1:86232369-86232388 Msa0383340:CDS 40.0%
TATGGCTCCAAACCGATTAA+GGG - chr3_1:86232387-86232406 Msa0383340:CDS 40.0%
TGTTTGAGCTAACCTTAGGA+GGG - chr3_1:86232720-86232739 Msa0383340:CDS 40.0%
! GGATTTTCCAAACATGGATG+AGG - chr3_1:86231039-86231058 Msa0383340:CDS 40.0%
! AAGTGAGTTTAAGCCTTGTG+TGG + chr3_1:86231092-86231111 None:intergenic 40.0%
!!! AGTGTTTTGAAGAGAGGGTT+GGG + chr3_1:86231140-86231159 None:intergenic 40.0%
!!! GAGTTCAGTGTTTTGAAGAG+AGG + chr3_1:86231146-86231165 None:intergenic 40.0%
! AAAGGTTGGTTATGGCTCTT+AGG + chr3_1:86231343-86231362 None:intergenic 40.0%
! CGAGAGTTAAAGGTTGGTTA+TGG + chr3_1:86231351-86231370 None:intergenic 40.0%
! CTTGGGGATTTCTAGATCTA+AGG + chr3_1:86231413-86231432 None:intergenic 40.0%
CTTAGATCTAGAAATCCCCA+AGG - chr3_1:86231411-86231430 Msa0383340:CDS 40.0%
AAGAAAGAGGCTGTTTACCA+CGG + chr3_1:86231681-86231700 None:intergenic 40.0%
ATGTAAGAGGCTGTTTACCA+CGG + chr3_1:86231810-86231829 None:intergenic 40.0%
AAAAGCTGTCACAATCACTC+CGG - chr3_1:86231961-86231980 Msa0383340:CDS 40.0%
CAATCCTTGAACTTATGCAC+GGG + chr3_1:86232332-86232351 None:intergenic 40.0%
GCAATCCTTGAACTTATGCA+CGG + chr3_1:86232333-86232352 None:intergenic 40.0%
TACCAGCAGATGAGTATTCA+TGG - chr3_1:86232358-86232377 Msa0383340:CDS 40.0%
GAGTATTCATGGAGGAAGTA+TGG - chr3_1:86232369-86232388 Msa0383340:CDS 40.0%
TATGGCTCCAAACCGATTAA+GGG - chr3_1:86232387-86232406 Msa0383340:CDS 40.0%
TGTTTGAGCTAACCTTAGGA+GGG - chr3_1:86232720-86232739 Msa0383340:CDS 40.0%
!!! GTGTTTTGAAGAGAGGGTTG+GGG + chr3_1:86231139-86231158 None:intergenic 45.0%
!!! CAGTGTTTTGAAGAGAGGGT+TGG + chr3_1:86231141-86231160 None:intergenic 45.0%
! GAGGTCTGAAACAGTGATGT+TGG + chr3_1:86231170-86231189 None:intergenic 45.0%
TCCAACTTACTCCACCGTAA+AGG - chr3_1:86231199-86231218 Msa0383340:CDS 45.0%
!! TGAATTTGAAGTGGTGGTGG+TGG + chr3_1:86231313-86231332 None:intergenic 45.0%
AGTGTTTCCAATGGCAGACT+TGG - chr3_1:86231484-86231503 Msa0383340:intron 45.0%
GATGAGTTAGGTGAAAGAGG+TGG + chr3_1:86231550-86231569 None:intergenic 45.0%
! ATGGTAGATGGCATTGGACA+TGG + chr3_1:86231640-86231659 None:intergenic 45.0%
AGAAAGAGGCTGTTTACCAC+GGG + chr3_1:86231680-86231699 None:intergenic 45.0%
TAGTCTGCCATTGGAAACAC+TGG + chr3_1:86231755-86231774 None:intergenic 45.0%
AGTGTTTCCAATGGCAGACT+AGG - chr3_1:86231484-86231503 Msa0383340:intron 45.0%
TTTACCACGGGAGATAGAAG+GGG + chr3_1:86231797-86231816 None:intergenic 45.0%
GTTTACCACGGGAGATAGAA+GGG + chr3_1:86231798-86231817 None:intergenic 45.0%
TGTTTACCACGGGAGATAGA+AGG + chr3_1:86231799-86231818 None:intergenic 45.0%
TGTAAGAGGCTGTTTACCAC+GGG + chr3_1:86231809-86231828 None:intergenic 45.0%
TTCAATGACGGCGATGAAAG+AGG + chr3_1:86231940-86231959 None:intergenic 45.0%
GCAGTGGCATTTCTTAGATG+CGG + chr3_1:86232007-86232026 None:intergenic 45.0%
AGAAATGCCACTGCCAGAAA+AGG - chr3_1:86232013-86232032 Msa0383340:CDS 45.0%
CTCCATGAATACTCATCTGC+TGG + chr3_1:86232363-86232382 None:intergenic 45.0%
CAGCAGATGAGTATTCATGG+AGG - chr3_1:86232361-86232380 Msa0383340:CDS 45.0%
GTATGGCTCCAAACCGATTA+AGG - chr3_1:86232386-86232405 Msa0383340:CDS 45.0%
TGGTGTTCCCTTAATCGGTT+TGG + chr3_1:86232397-86232416 None:intergenic 45.0%
GGATGTGGTGTTCCCTTAAT+CGG + chr3_1:86232402-86232421 None:intergenic 45.0%
TTAAGGGAACACCACATCCA+AGG - chr3_1:86232403-86232422 Msa0383340:CDS 45.0%
ATCATCAGTCACCTTGGATG+TGG + chr3_1:86232417-86232436 None:intergenic 45.0%
TTGGGGCTTGATTATGAAGC+TGG + chr3_1:86232640-86232659 None:intergenic 45.0%
GTGTTTGAGCTAACCTTAGG+AGG - chr3_1:86232719-86232738 Msa0383340:CDS 45.0%
!!! GTGTTTTGAAGAGAGGGTTG+GGG + chr3_1:86231139-86231158 None:intergenic 45.0%
!!! CAGTGTTTTGAAGAGAGGGT+TGG + chr3_1:86231141-86231160 None:intergenic 45.0%
! GAGGTCTGAAACAGTGATGT+TGG + chr3_1:86231170-86231189 None:intergenic 45.0%
TCCAACTTACTCCACCGTAA+AGG - chr3_1:86231199-86231218 Msa0383340:CDS 45.0%
!! TGAATTTGAAGTGGTGGTGG+TGG + chr3_1:86231313-86231332 None:intergenic 45.0%
AGTGTTTCCAATGGCAGACT+TGG - chr3_1:86231484-86231503 Msa0383340:intron 45.0%
GATGAGTTAGGTGAAAGAGG+TGG + chr3_1:86231550-86231569 None:intergenic 45.0%
! ATGGTAGATGGCATTGGACA+TGG + chr3_1:86231640-86231659 None:intergenic 45.0%
AGAAAGAGGCTGTTTACCAC+GGG + chr3_1:86231680-86231699 None:intergenic 45.0%
TAGTCTGCCATTGGAAACAC+TGG + chr3_1:86231755-86231774 None:intergenic 45.0%
AGTGTTTCCAATGGCAGACT+AGG - chr3_1:86231484-86231503 Msa0383340:intron 45.0%
TTTACCACGGGAGATAGAAG+GGG + chr3_1:86231797-86231816 None:intergenic 45.0%
GTTTACCACGGGAGATAGAA+GGG + chr3_1:86231798-86231817 None:intergenic 45.0%
TGTTTACCACGGGAGATAGA+AGG + chr3_1:86231799-86231818 None:intergenic 45.0%
TGTAAGAGGCTGTTTACCAC+GGG + chr3_1:86231809-86231828 None:intergenic 45.0%
TTCAATGACGGCGATGAAAG+AGG + chr3_1:86231940-86231959 None:intergenic 45.0%
GCAGTGGCATTTCTTAGATG+CGG + chr3_1:86232007-86232026 None:intergenic 45.0%
AGAAATGCCACTGCCAGAAA+AGG - chr3_1:86232013-86232032 Msa0383340:CDS 45.0%
CTCCATGAATACTCATCTGC+TGG + chr3_1:86232363-86232382 None:intergenic 45.0%
CAGCAGATGAGTATTCATGG+AGG - chr3_1:86232361-86232380 Msa0383340:CDS 45.0%
GTATGGCTCCAAACCGATTA+AGG - chr3_1:86232386-86232405 Msa0383340:CDS 45.0%
TGGTGTTCCCTTAATCGGTT+TGG + chr3_1:86232397-86232416 None:intergenic 45.0%
GGATGTGGTGTTCCCTTAAT+CGG + chr3_1:86232402-86232421 None:intergenic 45.0%
TTAAGGGAACACCACATCCA+AGG - chr3_1:86232403-86232422 Msa0383340:CDS 45.0%
ATCATCAGTCACCTTGGATG+TGG + chr3_1:86232417-86232436 None:intergenic 45.0%
TTGGGGCTTGATTATGAAGC+TGG + chr3_1:86232640-86232659 None:intergenic 45.0%
GTGTTTGAGCTAACCTTAGG+AGG - chr3_1:86232719-86232738 Msa0383340:CDS 45.0%
GCCTTTACGGTGGAGTAAGT+TGG + chr3_1:86231203-86231222 None:intergenic 50.0%
CAGGGGTTGCATTTGGATTG+CGG + chr3_1:86231240-86231259 None:intergenic 50.0%
GGTTGATCAGGGGTTGCATT+TGG + chr3_1:86231247-86231266 None:intergenic 50.0%
TTTGTGGCAGCGGTTGATCA+GGG + chr3_1:86231258-86231277 None:intergenic 50.0%
!! ATTTGAAGTGGTGGTGGTGG+AGG + chr3_1:86231310-86231329 None:intergenic 50.0%
! GGTTGGTTATGGCTCTTAGG+AGG + chr3_1:86231340-86231359 None:intergenic 50.0%
AGATGGACCAAGTCTGCCAT+TGG + chr3_1:86231494-86231513 None:intergenic 50.0%
GCAGGGGTGAGAATTTGAGA+TGG + chr3_1:86231511-86231530 None:intergenic 50.0%
!! ATTGGAAACACTGGCTTCGC+CGG + chr3_1:86231746-86231765 None:intergenic 50.0%
AGATGGTCCTAGTCTGCCAT+TGG + chr3_1:86231764-86231783 None:intergenic 50.0%
TTTACCACCAGAGACAGCAG+GGG + chr3_1:86231914-86231933 None:intergenic 50.0%
GTTTACCACCAGAGACAGCA+GGG + chr3_1:86231915-86231934 None:intergenic 50.0%
AATGACGGCGATGAAAGAGG+CGG + chr3_1:86231937-86231956 None:intergenic 50.0%
GTGGCATTTCTTAGATGCGG+AGG + chr3_1:86232004-86232023 None:intergenic 50.0%
GAGTCCCGTGCATAAGTTCA+AGG - chr3_1:86232325-86232344 Msa0383340:CDS 50.0%
TTGTCCAGCTAGGAAAAGGG+TGG - chr3_1:86232553-86232572 Msa0383340:CDS 50.0%
! TTCTCCACCCTTTTCCTAGC+TGG + chr3_1:86232560-86232579 None:intergenic 50.0%
AGCTAGGAAAAGGGTGGAGA+AGG - chr3_1:86232559-86232578 Msa0383340:CDS 50.0%
GGGCTTGATTATGAAGCTGG+TGG + chr3_1:86232637-86232656 None:intergenic 50.0%
! GGGGTGTTTGAGCTAACCTT+AGG - chr3_1:86232716-86232735 Msa0383340:CDS 50.0%
GCCTTTACGGTGGAGTAAGT+TGG + chr3_1:86231203-86231222 None:intergenic 50.0%
CAGGGGTTGCATTTGGATTG+CGG + chr3_1:86231240-86231259 None:intergenic 50.0%
GGTTGATCAGGGGTTGCATT+TGG + chr3_1:86231247-86231266 None:intergenic 50.0%
TTTGTGGCAGCGGTTGATCA+GGG + chr3_1:86231258-86231277 None:intergenic 50.0%
!! ATTTGAAGTGGTGGTGGTGG+AGG + chr3_1:86231310-86231329 None:intergenic 50.0%
! GGTTGGTTATGGCTCTTAGG+AGG + chr3_1:86231340-86231359 None:intergenic 50.0%
AGATGGACCAAGTCTGCCAT+TGG + chr3_1:86231494-86231513 None:intergenic 50.0%
GCAGGGGTGAGAATTTGAGA+TGG + chr3_1:86231511-86231530 None:intergenic 50.0%
!! ATTGGAAACACTGGCTTCGC+CGG + chr3_1:86231746-86231765 None:intergenic 50.0%
AGATGGTCCTAGTCTGCCAT+TGG + chr3_1:86231764-86231783 None:intergenic 50.0%
TTTACCACCAGAGACAGCAG+GGG + chr3_1:86231914-86231933 None:intergenic 50.0%
GTTTACCACCAGAGACAGCA+GGG + chr3_1:86231915-86231934 None:intergenic 50.0%
AATGACGGCGATGAAAGAGG+CGG + chr3_1:86231937-86231956 None:intergenic 50.0%
GTGGCATTTCTTAGATGCGG+AGG + chr3_1:86232004-86232023 None:intergenic 50.0%
GAGTCCCGTGCATAAGTTCA+AGG - chr3_1:86232325-86232344 Msa0383340:CDS 50.0%
TTGTCCAGCTAGGAAAAGGG+TGG - chr3_1:86232553-86232572 Msa0383340:CDS 50.0%
! TTCTCCACCCTTTTCCTAGC+TGG + chr3_1:86232560-86232579 None:intergenic 50.0%
AGCTAGGAAAAGGGTGGAGA+AGG - chr3_1:86232559-86232578 Msa0383340:CDS 50.0%
GGGCTTGATTATGAAGCTGG+TGG + chr3_1:86232637-86232656 None:intergenic 50.0%
! GGGGTGTTTGAGCTAACCTT+AGG - chr3_1:86232716-86232735 Msa0383340:CDS 50.0%
GGGTTGCATTTGGATTGCGG+CGG + chr3_1:86231237-86231256 None:intergenic 55.0%
TTGTGGCAGCGGTTGATCAG+GGG + chr3_1:86231257-86231276 None:intergenic 55.0%
GTTTGTGGCAGCGGTTGATC+AGG + chr3_1:86231259-86231278 None:intergenic 55.0%
GGAGTGGAAGTTTGTGGCAG+CGG + chr3_1:86231268-86231287 None:intergenic 55.0%
GTGGAGGGAGTGGAAGTTTG+TGG + chr3_1:86231274-86231293 None:intergenic 55.0%
! ATGGCGGAGGATAGGAGTGA+TGG + chr3_1:86231451-86231470 None:intergenic 55.0%
ATTGGAAACACTGCCGTCGC+CGG + chr3_1:86231476-86231495 None:intergenic 55.0%
TGAAAGAGGTGGTTTCCCGC+TGG + chr3_1:86231539-86231558 None:intergenic 55.0%
GCCTTTGCTCGCGATATCAC+CGG - chr3_1:86231583-86231602 Msa0383340:intron 55.0%
AGTGTCTCCAATGGCAGGCT+AGG - chr3_1:86231613-86231632 Msa0383340:intron 55.0%
ACATGGACCTAGCCTGCCAT+TGG + chr3_1:86231623-86231642 None:intergenic 55.0%
GTGGGGATGGTAGATGGCAT+TGG + chr3_1:86231646-86231665 None:intergenic 55.0%
TGTTTACCACGGGAGACAGC+GGG + chr3_1:86231670-86231689 None:intergenic 55.0%
CTGTTTACCACGGGAGACAG+CGG + chr3_1:86231671-86231690 None:intergenic 55.0%
! GTGATGGGGGAGGACATGAA+TGG + chr3_1:86231712-86231731 None:intergenic 55.0%
TTCATGTCCTCCCCCATCAC+CGG - chr3_1:86231712-86231731 Msa0383340:intron 55.0%
GGCGAAGCCAGTGTTTCCAA+TGG - chr3_1:86231745-86231764 Msa0383340:CDS 55.0%
GAGATAGAAGGGGTGAGGAG+TGG + chr3_1:86231787-86231806 None:intergenic 55.0%
TTCATGTCCTCCGCCATCAC+CGG - chr3_1:86231841-86231860 Msa0383340:CDS 55.0%
AACGCTTCTATCGCCGGTGA+TGG + chr3_1:86231857-86231876 None:intergenic 55.0%
GCTGGAAACGCTTCTATCGC+CGG + chr3_1:86231863-86231882 None:intergenic 55.0%
!! GGCGATAGAAGCGTTTCCAG+CGG - chr3_1:86231862-86231881 Msa0383340:CDS 55.0%
!! ATAGAAGCGTTTCCAGCGGC+AGG - chr3_1:86231866-86231885 Msa0383340:CDS 55.0%
! GCAGGGGTGAGGGTATAAGA+TGG + chr3_1:86231898-86231917 None:intergenic 55.0%
GGTTTACCACCAGAGACAGC+AGG + chr3_1:86231916-86231935 None:intergenic 55.0%
AATCACTCCGGCGATGTCTC+TGG - chr3_1:86231973-86231992 Msa0383340:CDS 55.0%
ATCACTCCGGCGATGTCTCT+GGG - chr3_1:86231974-86231993 Msa0383340:CDS 55.0%
! GGTTTTCCCAGAGACATCGC+CGG + chr3_1:86231983-86232002 None:intergenic 55.0%
! TCTGGTTCAGGTTCAGGGAG+TGG - chr3_1:86232674-86232693 Msa0383340:CDS 55.0%
! CTGGTTCAGGTTCAGGGAGT+GGG - chr3_1:86232675-86232694 Msa0383340:CDS 55.0%
! TGGGAGTGGGAGCATGGATT+TGG - chr3_1:86232694-86232713 Msa0383340:CDS 55.0%
! GGGAGTGGGAGCATGGATTT+GGG - chr3_1:86232695-86232714 Msa0383340:CDS 55.0%
! GGAGTGGGAGCATGGATTTG+GGG - chr3_1:86232696-86232715 Msa0383340:CDS 55.0%
! GAGTGGGAGCATGGATTTGG+GGG - chr3_1:86232697-86232716 Msa0383340:CDS 55.0%
GGGTTGCATTTGGATTGCGG+CGG + chr3_1:86231237-86231256 None:intergenic 55.0%
TTGTGGCAGCGGTTGATCAG+GGG + chr3_1:86231257-86231276 None:intergenic 55.0%
GTTTGTGGCAGCGGTTGATC+AGG + chr3_1:86231259-86231278 None:intergenic 55.0%
GGAGTGGAAGTTTGTGGCAG+CGG + chr3_1:86231268-86231287 None:intergenic 55.0%
GTGGAGGGAGTGGAAGTTTG+TGG + chr3_1:86231274-86231293 None:intergenic 55.0%
! ATGGCGGAGGATAGGAGTGA+TGG + chr3_1:86231451-86231470 None:intergenic 55.0%
ATTGGAAACACTGCCGTCGC+CGG + chr3_1:86231476-86231495 None:intergenic 55.0%
TGAAAGAGGTGGTTTCCCGC+TGG + chr3_1:86231539-86231558 None:intergenic 55.0%
GCCTTTGCTCGCGATATCAC+CGG - chr3_1:86231583-86231602 Msa0383340:intron 55.0%
AGTGTCTCCAATGGCAGGCT+AGG - chr3_1:86231613-86231632 Msa0383340:intron 55.0%
ACATGGACCTAGCCTGCCAT+TGG + chr3_1:86231623-86231642 None:intergenic 55.0%
GTGGGGATGGTAGATGGCAT+TGG + chr3_1:86231646-86231665 None:intergenic 55.0%
TGTTTACCACGGGAGACAGC+GGG + chr3_1:86231670-86231689 None:intergenic 55.0%
CTGTTTACCACGGGAGACAG+CGG + chr3_1:86231671-86231690 None:intergenic 55.0%
! GTGATGGGGGAGGACATGAA+TGG + chr3_1:86231712-86231731 None:intergenic 55.0%
TTCATGTCCTCCCCCATCAC+CGG - chr3_1:86231712-86231731 Msa0383340:intron 55.0%
GGCGAAGCCAGTGTTTCCAA+TGG - chr3_1:86231745-86231764 Msa0383340:CDS 55.0%
GAGATAGAAGGGGTGAGGAG+TGG + chr3_1:86231787-86231806 None:intergenic 55.0%
TTCATGTCCTCCGCCATCAC+CGG - chr3_1:86231841-86231860 Msa0383340:CDS 55.0%
AACGCTTCTATCGCCGGTGA+TGG + chr3_1:86231857-86231876 None:intergenic 55.0%
GCTGGAAACGCTTCTATCGC+CGG + chr3_1:86231863-86231882 None:intergenic 55.0%
!! GGCGATAGAAGCGTTTCCAG+CGG - chr3_1:86231862-86231881 Msa0383340:CDS 55.0%
!! ATAGAAGCGTTTCCAGCGGC+AGG - chr3_1:86231866-86231885 Msa0383340:CDS 55.0%
! GCAGGGGTGAGGGTATAAGA+TGG + chr3_1:86231898-86231917 None:intergenic 55.0%
GGTTTACCACCAGAGACAGC+AGG + chr3_1:86231916-86231935 None:intergenic 55.0%
AATCACTCCGGCGATGTCTC+TGG - chr3_1:86231973-86231992 Msa0383340:CDS 55.0%
ATCACTCCGGCGATGTCTCT+GGG - chr3_1:86231974-86231993 Msa0383340:CDS 55.0%
! GGTTTTCCCAGAGACATCGC+CGG + chr3_1:86231983-86232002 None:intergenic 55.0%
! TCTGGTTCAGGTTCAGGGAG+TGG - chr3_1:86232674-86232693 Msa0383340:CDS 55.0%
! CTGGTTCAGGTTCAGGGAGT+GGG - chr3_1:86232675-86232694 Msa0383340:CDS 55.0%
! TGGGAGTGGGAGCATGGATT+TGG - chr3_1:86232694-86232713 Msa0383340:CDS 55.0%
! GGGAGTGGGAGCATGGATTT+GGG - chr3_1:86232695-86232714 Msa0383340:CDS 55.0%
! GGAGTGGGAGCATGGATTTG+GGG - chr3_1:86232696-86232715 Msa0383340:CDS 55.0%
! GAGTGGGAGCATGGATTTGG+GGG - chr3_1:86232697-86232716 Msa0383340:CDS 55.0%
GGAAGCGAGCGTGGCCTTTA+CGG + chr3_1:86231216-86231235 None:intergenic 60.0%
CTGAGTAGAGGTGGAGGGAG+TGG + chr3_1:86231284-86231303 None:intergenic 60.0%
GGTGGCTGAGTAGAGGTGGA+GGG + chr3_1:86231289-86231308 None:intergenic 60.0%
AGGTGGCTGAGTAGAGGTGG+AGG + chr3_1:86231290-86231309 None:intergenic 60.0%
TGGAGGTGGCTGAGTAGAGG+TGG + chr3_1:86231293-86231312 None:intergenic 60.0%
TGGTGGAGGTGGCTGAGTAG+AGG + chr3_1:86231296-86231315 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGAGG+TGG + chr3_1:86231307-86231326 None:intergenic 60.0%
CTCCTATCCTCCGCCATCAC+CGG - chr3_1:86231454-86231473 Msa0383340:intron 60.0%
GGCGACGGCAGTGTTTCCAA+TGG - chr3_1:86231475-86231494 Msa0383340:intron 60.0%
TTTCCCGCTGGAGACAGCAG+GGG + chr3_1:86231527-86231546 None:intergenic 60.0%
GTTTCCCGCTGGAGACAGCA+GGG + chr3_1:86231528-86231547 None:intergenic 60.0%
GCCGGTGATATCGCGAGCAA+AGG + chr3_1:86231587-86231606 None:intergenic 60.0%
ATTGGAGACACTGCCGTCGC+CGG + chr3_1:86231605-86231624 None:intergenic 60.0%
ACGGCAGTGTCTCCAATGGC+AGG - chr3_1:86231608-86231627 Msa0383340:intron 60.0%
TTTACCACGGGAGACAGCGG+GGG + chr3_1:86231668-86231687 None:intergenic 60.0%
GTTTACCACGGGAGACAGCG+GGG + chr3_1:86231669-86231688 None:intergenic 60.0%
! GGTGTAATGGCCGGTGATGG+GGG + chr3_1:86231725-86231744 None:intergenic 60.0%
CGGTGTAATGGCCGGTGATG+GGG + chr3_1:86231726-86231745 None:intergenic 60.0%
CCGGTGTAATGGCCGGTGAT+GGG + chr3_1:86231727-86231746 None:intergenic 60.0%
CCCATCACCGGCCATTACAC+CGG - chr3_1:86231724-86231743 Msa0383340:intron 60.0%
!! CACTGGCTTCGCCGGTGTAA+TGG + chr3_1:86231738-86231757 None:intergenic 60.0%
GAAGGGGTGAGGAGTGGAGA+TGG + chr3_1:86231781-86231800 None:intergenic 60.0%
CACGGGAGATAGAAGGGGTG+AGG + chr3_1:86231792-86231811 None:intergenic 60.0%
CTCACCCCTTCTATCTCCCG+TGG - chr3_1:86231790-86231809 Msa0383340:CDS 60.0%
! GCTTCTATCGCCGGTGATGG+CGG + chr3_1:86231854-86231873 None:intergenic 60.0%
AGCGTTTCCAGCGGCAGGAT+CGG - chr3_1:86231871-86231890 Msa0383340:CDS 60.0%
ACCAGAGACAGCAGGGGTGA+GGG + chr3_1:86231908-86231927 None:intergenic 60.0%
TCAGGTTCAGGGAGTGGGAG+TGG - chr3_1:86232680-86232699 Msa0383340:CDS 60.0%
CAGGTTCAGGGAGTGGGAGT+GGG - chr3_1:86232681-86232700 Msa0383340:CDS 60.0%
GGAAGCGAGCGTGGCCTTTA+CGG + chr3_1:86231216-86231235 None:intergenic 60.0%
CTGAGTAGAGGTGGAGGGAG+TGG + chr3_1:86231284-86231303 None:intergenic 60.0%
GGTGGCTGAGTAGAGGTGGA+GGG + chr3_1:86231289-86231308 None:intergenic 60.0%
AGGTGGCTGAGTAGAGGTGG+AGG + chr3_1:86231290-86231309 None:intergenic 60.0%
TGGAGGTGGCTGAGTAGAGG+TGG + chr3_1:86231293-86231312 None:intergenic 60.0%
TGGTGGAGGTGGCTGAGTAG+AGG + chr3_1:86231296-86231315 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGAGG+TGG + chr3_1:86231307-86231326 None:intergenic 60.0%
CTCCTATCCTCCGCCATCAC+CGG - chr3_1:86231454-86231473 Msa0383340:intron 60.0%
GGCGACGGCAGTGTTTCCAA+TGG - chr3_1:86231475-86231494 Msa0383340:intron 60.0%
TTTCCCGCTGGAGACAGCAG+GGG + chr3_1:86231527-86231546 None:intergenic 60.0%
GTTTCCCGCTGGAGACAGCA+GGG + chr3_1:86231528-86231547 None:intergenic 60.0%
GCCGGTGATATCGCGAGCAA+AGG + chr3_1:86231587-86231606 None:intergenic 60.0%
ATTGGAGACACTGCCGTCGC+CGG + chr3_1:86231605-86231624 None:intergenic 60.0%
ACGGCAGTGTCTCCAATGGC+AGG - chr3_1:86231608-86231627 Msa0383340:intron 60.0%
TTTACCACGGGAGACAGCGG+GGG + chr3_1:86231668-86231687 None:intergenic 60.0%
GTTTACCACGGGAGACAGCG+GGG + chr3_1:86231669-86231688 None:intergenic 60.0%
! GGTGTAATGGCCGGTGATGG+GGG + chr3_1:86231725-86231744 None:intergenic 60.0%
CGGTGTAATGGCCGGTGATG+GGG + chr3_1:86231726-86231745 None:intergenic 60.0%
CCGGTGTAATGGCCGGTGAT+GGG + chr3_1:86231727-86231746 None:intergenic 60.0%
CCCATCACCGGCCATTACAC+CGG - chr3_1:86231724-86231743 Msa0383340:intron 60.0%
!! CACTGGCTTCGCCGGTGTAA+TGG + chr3_1:86231738-86231757 None:intergenic 60.0%
GAAGGGGTGAGGAGTGGAGA+TGG + chr3_1:86231781-86231800 None:intergenic 60.0%
CACGGGAGATAGAAGGGGTG+AGG + chr3_1:86231792-86231811 None:intergenic 60.0%
CTCACCCCTTCTATCTCCCG+TGG - chr3_1:86231790-86231809 Msa0383340:CDS 60.0%
! GCTTCTATCGCCGGTGATGG+CGG + chr3_1:86231854-86231873 None:intergenic 60.0%
AGCGTTTCCAGCGGCAGGAT+CGG - chr3_1:86231871-86231890 Msa0383340:CDS 60.0%
ACCAGAGACAGCAGGGGTGA+GGG + chr3_1:86231908-86231927 None:intergenic 60.0%
TCAGGTTCAGGGAGTGGGAG+TGG - chr3_1:86232680-86232699 Msa0383340:CDS 60.0%
CAGGTTCAGGGAGTGGGAGT+GGG - chr3_1:86232681-86232700 Msa0383340:CDS 60.0%
AGCGAGCGTGGCCTTTACGG+TGG + chr3_1:86231213-86231232 None:intergenic 65.0%
AACACTGCCGTCGCCGGTGA+TGG + chr3_1:86231470-86231489 None:intergenic 65.0%
CTCACCCCTGCTGTCTCCAG+CGG - chr3_1:86231520-86231539 Msa0383340:intron 65.0%
TCACCCCTGCTGTCTCCAGC+GGG - chr3_1:86231521-86231540 Msa0383340:intron 65.0%
GGTTTCCCGCTGGAGACAGC+AGG + chr3_1:86231529-86231548 None:intergenic 65.0%
GCTCGCGATATCACCGGCGA+CGG - chr3_1:86231589-86231608 Msa0383340:intron 65.0%
GGCGACGGCAGTGTCTCCAA+TGG - chr3_1:86231604-86231623 Msa0383340:intron 65.0%
!! GTAATGGCCGGTGATGGGGG+AGG + chr3_1:86231722-86231741 None:intergenic 65.0%
GCCGGTGTAATGGCCGGTGA+TGG + chr3_1:86231728-86231747 None:intergenic 65.0%
GGCTTCGCCGGTGTAATGGC+CGG + chr3_1:86231734-86231753 None:intergenic 65.0%
!! TCTATCGCCGGTGATGGCGG+AGG + chr3_1:86231851-86231870 None:intergenic 65.0%
AGATGGACCGATCCTGCCGC+TGG + chr3_1:86231881-86231900 None:intergenic 65.0%
ACCCTCACCCCTGCTGTCTC+TGG - chr3_1:86231904-86231923 Msa0383340:CDS 65.0%
CACCAGAGACAGCAGGGGTG+AGG + chr3_1:86231909-86231928 None:intergenic 65.0%
CTCACCCCTGCTGTCTCTGG+TGG - chr3_1:86231907-86231926 Msa0383340:CDS 65.0%
AGGGAGTGGGAGTGGGAGCA+TGG - chr3_1:86232688-86232707 Msa0383340:CDS 65.0%
AGCGAGCGTGGCCTTTACGG+TGG + chr3_1:86231213-86231232 None:intergenic 65.0%
AACACTGCCGTCGCCGGTGA+TGG + chr3_1:86231470-86231489 None:intergenic 65.0%
CTCACCCCTGCTGTCTCCAG+CGG - chr3_1:86231520-86231539 Msa0383340:intron 65.0%
TCACCCCTGCTGTCTCCAGC+GGG - chr3_1:86231521-86231540 Msa0383340:intron 65.0%
GGTTTCCCGCTGGAGACAGC+AGG + chr3_1:86231529-86231548 None:intergenic 65.0%
GCTCGCGATATCACCGGCGA+CGG - chr3_1:86231589-86231608 Msa0383340:intron 65.0%
GGCGACGGCAGTGTCTCCAA+TGG - chr3_1:86231604-86231623 Msa0383340:intron 65.0%
!! GTAATGGCCGGTGATGGGGG+AGG + chr3_1:86231722-86231741 None:intergenic 65.0%
GCCGGTGTAATGGCCGGTGA+TGG + chr3_1:86231728-86231747 None:intergenic 65.0%
GGCTTCGCCGGTGTAATGGC+CGG + chr3_1:86231734-86231753 None:intergenic 65.0%
!! TCTATCGCCGGTGATGGCGG+AGG + chr3_1:86231851-86231870 None:intergenic 65.0%
AGATGGACCGATCCTGCCGC+TGG + chr3_1:86231881-86231900 None:intergenic 65.0%
ACCCTCACCCCTGCTGTCTC+TGG - chr3_1:86231904-86231923 Msa0383340:CDS 65.0%
CACCAGAGACAGCAGGGGTG+AGG + chr3_1:86231909-86231928 None:intergenic 65.0%
CTCACCCCTGCTGTCTCTGG+TGG - chr3_1:86231907-86231926 Msa0383340:CDS 65.0%
AGGGAGTGGGAGTGGGAGCA+TGG - chr3_1:86232688-86232707 Msa0383340:CDS 65.0%
GATTGCGGCGGAAGCGAGCG+TGG + chr3_1:86231225-86231244 None:intergenic 70.0%
!! CGCCGGTGATGGCGGAGGAT+AGG + chr3_1:86231459-86231478 None:intergenic 70.0%
TCCTCCGCCATCACCGGCGA+CGG - chr3_1:86231460-86231479 Msa0383340:intron 70.0%
! ACTGCCGTCGCCGGTGATGG+CGG + chr3_1:86231467-86231486 None:intergenic 70.0%
GCGGGGGTGGGGATGGTAGA+TGG + chr3_1:86231652-86231671 None:intergenic 70.0%
GATTGCGGCGGAAGCGAGCG+TGG + chr3_1:86231225-86231244 None:intergenic 70.0%
!! CGCCGGTGATGGCGGAGGAT+AGG + chr3_1:86231459-86231478 None:intergenic 70.0%
TCCTCCGCCATCACCGGCGA+CGG - chr3_1:86231460-86231479 Msa0383340:intron 70.0%
! ACTGCCGTCGCCGGTGATGG+CGG + chr3_1:86231467-86231486 None:intergenic 70.0%
GCGGGGGTGGGGATGGTAGA+TGG + chr3_1:86231652-86231671 None:intergenic 70.0%
GGAGACAGCGGGGGTGGGGA+TGG + chr3_1:86231659-86231678 None:intergenic 75.0%
CACGGGAGACAGCGGGGGTG+GGG + chr3_1:86231663-86231682 None:intergenic 75.0%
CCACGGGAGACAGCGGGGGT+GGG + chr3_1:86231664-86231683 None:intergenic 75.0%
ACCACGGGAGACAGCGGGGG+TGG + chr3_1:86231665-86231684 None:intergenic 75.0%
GGAGACAGCGGGGGTGGGGA+TGG + chr3_1:86231659-86231678 None:intergenic 75.0%
CACGGGAGACAGCGGGGGTG+GGG + chr3_1:86231663-86231682 None:intergenic 75.0%
CCACGGGAGACAGCGGGGGT+GGG + chr3_1:86231664-86231683 None:intergenic 75.0%
ACCACGGGAGACAGCGGGGG+TGG + chr3_1:86231665-86231684 None:intergenic 75.0%
!!! GCCGTCGCCGGTGATGGCGG+AGG + chr3_1:86231464-86231483 None:intergenic 80.0%
! CCCACCCCCGCTGTCTCCCG+TGG - chr3_1:86231661-86231680 Msa0383340:intron 80.0%
!!! GCCGTCGCCGGTGATGGCGG+AGG + chr3_1:86231464-86231483 None:intergenic 80.0%
! CCCACCCCCGCTGTCTCCCG+TGG - chr3_1:86231661-86231680 Msa0383340:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86231022 86232748 86231022 ID=Msa0383340;Name=Msa0383340
chr3_1 mRNA 86231022 86232748 86231022 ID=Msa0383340-mRNA-1;Parent=Msa0383340;Name=Msa0383340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|454
chr3_1 exon 86231736 86232748 86231736 ID=Msa0383340-mRNA-1:exon:22760;Parent=Msa0383340-mRNA-1
chr3_1 exon 86231346 86231471 86231346 ID=Msa0383340-mRNA-1:exon:22759;Parent=Msa0383340-mRNA-1
chr3_1 exon 86231022 86231247 86231022 ID=Msa0383340-mRNA-1:exon:22758;Parent=Msa0383340-mRNA-1
chr3_1 CDS 86231736 86232748 86231736 ID=Msa0383340-mRNA-1:cds;Parent=Msa0383340-mRNA-1
chr3_1 CDS 86231346 86231471 86231346 ID=Msa0383340-mRNA-1:cds;Parent=Msa0383340-mRNA-1
chr3_1 CDS 86231022 86231247 86231022 ID=Msa0383340-mRNA-1:cds;Parent=Msa0383340-mRNA-1
Gene Sequence

>Msa0383340

ATGACTTTGAGATTGATGGATTTTCCAAACATGGATGAGGAAAAAGAAAAGGCAATATTAGAAACTGCCACACAAGGCTTAAACTCACTTGCCAACTTCGCTAATAATGTCTCTCCCCAACCCTCTCTTCAAAACACTGAACTCACCAACATCACTGTTTCAGACCTCAAGAAACTATCCAACTTACTCCACCGTAAAGGCCACGCTCGCTTCCGCCGCAATCCAAATGCAACCCCTGATCAACCGCTGCCACAAACTTCCACTCCCTCCACCTCTACTCAGCCACCTCCACCACCACCACTTCAAATTCAAATTCCTCCTAAGAGCCATAACCAACCTTTAACTCTCGATTTTACTAAACCTTACACCTTTAAATCTAACCCTAAATCCTTAGATCTAGAAATCCCCAAGGAAACATTTAGTTTTCCATCACTCCTATCCTCCGCCATCACCGGCGACGGCAGTGTTTCCAATGGCAGACTTGGTCCATCTCAAATTCTCACCCCTGCTGTCTCCAGCGGGAAACCACCTCTTTCACCTAACTCATCATTCATGTCATCTGCCTTTGCTCGCGATATCACCGGCGACGGCAGTGTCTCCAATGGCAGGCTAGGTCCATGTCCAATGCCATCTACCATCCCCACCCCCGCTGTCTCCCGTGGTAAACAGCCTCTTTCTTCTATCTCACCATTCATGTCCTCCCCCATCACCGGCCATTACACCGGCGAAGCCAGTGTTTCCAATGGCAGACTAGGACCATCTCCACTCCTCACCCCTTCTATCTCCCGTGGTAAACAGCCTCTTACATCTTACTCATCTTTCATGTCCTCCGCCATCACCGGCGATAGAAGCGTTTCCAGCGGCAGGATCGGTCCATCTTATACCCTCACCCCTGCTGTCTCTGGTGGTAAACCGCCTCTTTCATCGCCGTCATTGAAGAAAAGCTGTCACAATCACTCCGGCGATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAAAGGAAAAATCGGAACAGGAGACAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGCTCCAAACCGATTAAGGGAACACCACATCCAAGGGGTTATTATAGGTGCACTATGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAGGCGAAAGATGATCCAAATATACTAGTTGTAACGTATGAGTTTGAGCATCGTCACCACCAGCTTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGTTCAGGGAGTGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGGAATTAG
Protein sequence

>Msa0383340

MTLRLMDFPNMDEEKEKAILETATQGLNSLANFANNVSPQPSLQNTELTNITVSDLKKLSNLLHRKGHARFRRNPNATPDQPLPQTSTPSTSTQPPPPPPLQIQIPPKSHNQPLTLDFTKPYTFKSNPKSLDLEIPKETFSFPSLLSSAITGDGSVSNGRLGPSQILTPAVSSGKPPLSPNSSFMSSAFARDITGDGSVSNGRLGPCPMPSTIPTPAVSRGKQPLSSISPFMSSPITGHYTGEASVSNGRLGPSPLLTPSISRGKQPLTSYSSFMSSAITGDRSVSSGRIGPSYTLTPAVSGGKPPLSSPSLKKSCHNHSGDVSGKTSASKKCHCQKRKNRNRRQVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTMSKNCPARKRVEKAKDDPNILVVTYEFEHRHHQLHNQAPMQENNSGSGSGSGSGSMDLGVFELTLGGN*