Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383740 | XP_024635444.2 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383740 | sp|Q9C942|CSE_ARATH | 33.333 | 288 | 180 | 7 | 95 | 372 | 39 | 324 | 2.27e-41 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383740 | A0A396IZC2 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0383700 | Msa0383740 | 0.965141 | 3.201105e-124 | -8.615850e-47 |
| Msa0383740 | Msa1342280 | 0.806377 | 8.473029e-50 | -8.615850e-47 |
| Msa0297950 | Msa0383740 | 0.809928 | 1.484857e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383740 | MtrunA17_Chr3g0140391 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Msa0383740 | MtrunA17_Chr6g0479331 | 54.485 | 301 | 137 | 0 | 72 | 372 | 91 | 391 | 2.67e-115 | 340 |
| Msa0383740 | MtrunA17_Chr1g0209741 | 35.461 | 282 | 164 | 9 | 103 | 371 | 101 | 377 | 4.12e-46 | 162 |
| Msa0383740 | MtrunA17_Chr6g0460121 | 35.379 | 277 | 162 | 7 | 107 | 371 | 29 | 300 | 1.61e-44 | 155 |
| Msa0383740 | MtrunA17_Chr6g0457581 | 32.530 | 332 | 198 | 10 | 60 | 370 | 10 | 336 | 9.35e-44 | 154 |
| Msa0383740 | MtrunA17_Chr4g0047891 | 34.694 | 294 | 162 | 11 | 97 | 371 | 41 | 323 | 3.27e-40 | 145 |
| Msa0383740 | MtrunA17_Chr4g0071671 | 32.986 | 288 | 181 | 7 | 95 | 372 | 30 | 315 | 1.52e-39 | 143 |
| Msa0383740 | MtrunA17_Chr7g0215451 | 31.329 | 316 | 191 | 9 | 75 | 370 | 28 | 337 | 2.40e-34 | 129 |
| Msa0383740 | MtrunA17_Chr5g0423541 | 31.071 | 280 | 179 | 8 | 103 | 371 | 115 | 391 | 3.72e-34 | 130 |
| Msa0383740 | MtrunA17_Chr1g0195501 | 32.857 | 280 | 173 | 8 | 103 | 371 | 16 | 291 | 3.90e-34 | 128 |
| Msa0383740 | MtrunA17_Chr1g0212901 | 31.379 | 290 | 184 | 8 | 93 | 371 | 8 | 293 | 4.43e-33 | 125 |
| Msa0383740 | MtrunA17_Chr7g0269371 | 29.514 | 288 | 189 | 8 | 93 | 370 | 6 | 289 | 5.40e-33 | 125 |
| Msa0383740 | MtrunA17_Chr1g0199771 | 30.769 | 286 | 166 | 10 | 103 | 368 | 39 | 312 | 8.06e-30 | 117 |
| Msa0383740 | MtrunA17_Chr6g0484431 | 29.694 | 229 | 130 | 5 | 103 | 313 | 66 | 281 | 3.97e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383740 | AT5G11650.1 | 72.513 | 382 | 92 | 4 | 1 | 372 | 1 | 379 | 0.0 | 526 |
| Msa0383740 | AT5G11650.2 | 68.874 | 302 | 81 | 4 | 1 | 292 | 1 | 299 | 1.02e-132 | 382 |
| Msa0383740 | AT1G73480.1 | 56.386 | 321 | 134 | 2 | 52 | 372 | 149 | 463 | 6.44e-128 | 375 |
| Msa0383740 | AT1G18360.1 | 55.000 | 320 | 138 | 2 | 54 | 372 | 68 | 382 | 6.47e-125 | 365 |
| Msa0383740 | AT1G52760.1 | 33.333 | 288 | 180 | 7 | 95 | 372 | 39 | 324 | 2.30e-42 | 151 |
| Msa0383740 | AT2G39420.1 | 33.779 | 299 | 183 | 8 | 85 | 372 | 1 | 295 | 1.37e-41 | 149 |
| Msa0383740 | AT2G39410.2 | 34.138 | 290 | 176 | 8 | 93 | 371 | 9 | 294 | 8.31e-41 | 146 |
| Msa0383740 | AT1G11090.1 | 32.308 | 325 | 179 | 13 | 65 | 371 | 13 | 314 | 1.08e-40 | 146 |
| Msa0383740 | AT5G16120.2 | 30.347 | 346 | 215 | 10 | 47 | 370 | 15 | 356 | 1.03e-37 | 139 |
| Msa0383740 | AT5G16120.4 | 30.347 | 346 | 215 | 10 | 47 | 370 | 29 | 370 | 1.17e-37 | 140 |
| Msa0383740 | AT2G39400.1 | 34.767 | 279 | 169 | 6 | 103 | 371 | 13 | 288 | 2.58e-37 | 137 |
| Msa0383740 | AT5G16120.3 | 32.258 | 279 | 174 | 7 | 103 | 370 | 64 | 338 | 1.49e-36 | 136 |
| Msa0383740 | AT5G16120.1 | 32.258 | 279 | 174 | 7 | 103 | 370 | 64 | 338 | 1.49e-36 | 136 |
| Msa0383740 | AT1G77420.1 | 32.509 | 283 | 173 | 8 | 103 | 372 | 102 | 379 | 6.06e-34 | 129 |
| Msa0383740 | AT3G55190.1 | 32.013 | 303 | 188 | 10 | 85 | 374 | 1 | 298 | 1.28e-33 | 127 |
| Msa0383740 | AT3G55180.1 | 35.106 | 282 | 165 | 11 | 103 | 371 | 13 | 289 | 3.29e-33 | 126 |
| Msa0383740 | AT2G47630.1 | 32.042 | 284 | 176 | 9 | 102 | 371 | 13 | 293 | 1.25e-28 | 114 |
| Msa0383740 | AT3G62860.1 | 30.824 | 279 | 179 | 8 | 103 | 371 | 17 | 291 | 3.00e-28 | 113 |
| Msa0383740 | AT5G14980.1 | 27.143 | 280 | 181 | 7 | 107 | 371 | 44 | 315 | 3.80e-28 | 112 |
| Msa0383740 | AT2G47630.2 | 32.400 | 250 | 157 | 6 | 131 | 371 | 2 | 248 | 1.06e-26 | 108 |
| Msa0383740 | AT3G62860.2 | 32.218 | 239 | 150 | 6 | 142 | 371 | 13 | 248 | 2.63e-26 | 107 |
| Msa0383740 | AT2G47630.3 | 33.054 | 239 | 148 | 6 | 142 | 371 | 33 | 268 | 2.91e-26 | 107 |
| Msa0383740 | AT5G19290.1 | 28.276 | 290 | 174 | 11 | 103 | 371 | 40 | 316 | 1.89e-24 | 102 |
| Msa0383740 | AT2G39400.2 | 30.698 | 215 | 137 | 6 | 103 | 309 | 13 | 223 | 5.53e-19 | 85.9 |
Find 138 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTTATTATCAGGATTT+AGG | 0.126422 | 3_1:-86756016 | None:intergenic |
| CGCTCTTGGTTCCCGGTTTA+CGG | 0.245680 | 3_1:+86752291 | Msa0383740:CDS |
| GGCGGCGGCGGCGGTGGTGG+TGG | 0.258398 | 3_1:-86751934 | None:intergenic |
| ATATTAACAGGGAGCTTTCT+TGG | 0.258404 | 3_1:+86753841 | Msa0383740:intron |
| GGGATACCATGCTTTCTCTT+TGG | 0.279950 | 3_1:+86753887 | Msa0383740:CDS |
| ATATTGTGGGATTTATTATC+AGG | 0.282886 | 3_1:-86756023 | None:intergenic |
| AAAGAGGCATTCCAGTTTCT+AGG | 0.295461 | 3_1:+86755394 | Msa0383740:CDS |
| TTCACAAGATTTATACAATA+AGG | 0.302609 | 3_1:+86755596 | Msa0383740:CDS |
| TCGTTCTCCCTCGTCGGAAT+AGG | 0.303249 | 3_1:+86752091 | Msa0383740:CDS |
| GGATTTATTATCAGGATTTA+GGG | 0.306373 | 3_1:-86756015 | None:intergenic |
| TGAAGAGACGATGGTTGGTT+AGG | 0.332127 | 3_1:+86752145 | Msa0383740:CDS |
| TGCTTCCGCCACCCACTCTT+CGG | 0.336874 | 3_1:-86755857 | None:intergenic |
| ATGATATTCGCAGTATTTCA+TGG | 0.338631 | 3_1:-86755488 | None:intergenic |
| ATCGCTAACGGCGGCGGCGG+CGG | 0.345533 | 3_1:-86751943 | None:intergenic |
| GGGAAGAAGAGGATACGTTT+AGG | 0.352429 | 3_1:+86752166 | Msa0383740:CDS |
| GGCGGTGGTGGTGGTGGCGG+AGG | 0.365118 | 3_1:-86751925 | None:intergenic |
| GCAAAACTTACGCCAACTAT+TGG | 0.365315 | 3_1:-86754112 | None:intergenic |
| GAGAAATTTGTACATTCAAC+TGG | 0.367033 | 3_1:+86755967 | Msa0383740:three_prime_UTR |
| GGCGGCGGCGGTGGTGGTGG+TGG | 0.368594 | 3_1:-86751931 | None:intergenic |
| TTTCTCTTTGGTCACTCAAC+TGG | 0.369424 | 3_1:+86753899 | Msa0383740:CDS |
| CTTTGAGAAGAGGAATTATA+CGG | 0.370807 | 3_1:-86752014 | None:intergenic |
| GCATTTGAAAATGTCAATAA+TGG | 0.372165 | 3_1:+86755742 | Msa0383740:exon |
| GCGGAGGAAAGTGGCGGTGG+CGG | 0.376938 | 3_1:-86751909 | None:intergenic |
| GGCGGCGGTGGTGGTGGTGG+CGG | 0.389680 | 3_1:-86751928 | None:intergenic |
| AGTGGCGGTGGCGGAGGAAG+CGG | 0.392713 | 3_1:-86751900 | None:intergenic |
| TGGCCAGTTCGAACTCTAAT+AGG | 0.393321 | 3_1:-86755468 | None:intergenic |
| GCTGCTGGATCCCTAGAAAC+TGG | 0.395115 | 3_1:-86755405 | None:intergenic |
| TAAATTATATATTGTGTGTA+GGG | 0.395581 | 3_1:+86755931 | Msa0383740:three_prime_UTR |
| GCTCCTTTGAACTGGAACCT+TGG | 0.396791 | 3_1:-86755366 | None:intergenic |
| CTCTTTGGTCACTCAACTGG+AGG | 0.400550 | 3_1:+86753902 | Msa0383740:CDS |
| TAGGGATCCAGCAGCTTTGT+TGG | 0.405367 | 3_1:+86755413 | Msa0383740:CDS |
| CACATTGAAGTGATGGTAGA+AGG | 0.405601 | 3_1:+86754046 | Msa0383740:CDS |
| GTGGTGGTGGCGGAGGAAAG+TGG | 0.411584 | 3_1:-86751918 | None:intergenic |
| AAGAGGAATTATACGGTTGC+TGG | 0.413860 | 3_1:-86752007 | None:intergenic |
| GAGGAAAGTGGCGGTGGCGG+AGG | 0.416873 | 3_1:-86751906 | None:intergenic |
| TACTTAAGATCACCGTAAAC+CGG | 0.431025 | 3_1:-86752303 | None:intergenic |
| GTGGCGGAGGAAAGTGGCGG+TGG | 0.435667 | 3_1:-86751912 | None:intergenic |
| GACATCGCTAACGGCGGCGG+CGG | 0.440925 | 3_1:-86751946 | None:intergenic |
| GAAGAGACGATGGTTGGTTA+GGG | 0.443367 | 3_1:+86752146 | Msa0383740:CDS |
| GCTTCCGCCACCCACTCTTC+GGG | 0.444216 | 3_1:-86755856 | None:intergenic |
| TCACTCAACTGGAGGGGCTG+TGG | 0.448260 | 3_1:+86753910 | Msa0383740:CDS |
| GGCAAAGTACTCTGATCCTC+TGG | 0.452619 | 3_1:+86755434 | Msa0383740:CDS |
| ACCGTTAGATCATCAATAAA+CGG | 0.453579 | 3_1:+86751742 | Msa0383740:five_prime_UTR |
| TCTTGTTCGTTCTCCCTCGT+CGG | 0.453724 | 3_1:+86752085 | Msa0383740:CDS |
| TTCTACACACTTGCCAACTT+TGG | 0.457166 | 3_1:-86755822 | None:intergenic |
| GGAGCTACCAGAGAAAATAT+TGG | 0.459523 | 3_1:-86755345 | None:intergenic |
| TTGCTGGCTCCCGACGTTAG+TGG | 0.459715 | 3_1:-86751991 | None:intergenic |
| AACTTTCTAACTACCAAAGT+TGG | 0.459746 | 3_1:+86755809 | Msa0383740:three_prime_UTR |
| AAGATTAGATCAGAGAATCC+TGG | 0.460328 | 3_1:+86753866 | Msa0383740:CDS |
| TACTTTGCCAACAAAGCTGC+TGG | 0.462234 | 3_1:-86755420 | None:intergenic |
| AAAGACATAAAGCTTTATGA+TGG | 0.463555 | 3_1:+86755633 | Msa0383740:CDS |
| CAGTTAACATTGTGCAACTT+TGG | 0.464279 | 3_1:+86753522 | Msa0383740:CDS |
| TTAAATTATATATTGTGTGT+AGG | 0.465601 | 3_1:+86755930 | Msa0383740:three_prime_UTR |
| CACGCTCCGGCTCAAACAAA+AGG | 0.473659 | 3_1:-86755668 | None:intergenic |
| TGTTCCTTCTCTTGATCAAG+TGG | 0.475105 | 3_1:+86753695 | Msa0383740:CDS |
| GTCATGATGATGGTTGTTGC+CGG | 0.479005 | 3_1:+86752220 | Msa0383740:CDS |
| AACTTTGGTAGTTAGAAAGT+TGG | 0.486077 | 3_1:-86755807 | None:intergenic |
| AGAGCGTTGGCTCAGGATGT+TGG | 0.493929 | 3_1:+86752192 | Msa0383740:CDS |
| TGAATGTACAAATTTCTCAA+TGG | 0.495891 | 3_1:-86755962 | None:intergenic |
| TCTTTGGTCACTCAACTGGA+GGG | 0.497603 | 3_1:+86753903 | Msa0383740:CDS |
| TAGCTCAGGACATTATCAAC+TGG | 0.499576 | 3_1:+86755697 | Msa0383740:CDS |
| GTTGGCTCAGGATGTTGGAA+TGG | 0.504108 | 3_1:+86752197 | Msa0383740:CDS |
| CGTCTCTTCAAATTCTTCCT+CGG | 0.504971 | 3_1:-86752132 | None:intergenic |
| CCCGACGTTAGTGGCTCCAT+CGG | 0.505881 | 3_1:-86751982 | None:intergenic |
| GAAGACATCGCTAACGGCGG+CGG | 0.512381 | 3_1:-86751949 | None:intergenic |
| AAGAGAAAGCATGGTATCCC+AGG | 0.512430 | 3_1:-86753884 | None:intergenic |
| CTTTATCAGCAGTTCCATGC+AGG | 0.512579 | 3_1:-86755557 | None:intergenic |
| AAGCCATCTCATCCAATAGT+TGG | 0.515260 | 3_1:+86754100 | Msa0383740:CDS |
| TCCGTTTATTGATGATCTAA+CGG | 0.517013 | 3_1:-86751743 | None:intergenic |
| CTTTGGTCACTCAACTGGAG+GGG | 0.520149 | 3_1:+86753904 | Msa0383740:CDS |
| GATGGCTTCACACGCAAAGC+TGG | 0.522765 | 3_1:-86754085 | None:intergenic |
| TGGCTCCATCGGCGCATCGA+TGG | 0.526428 | 3_1:-86751971 | None:intergenic |
| TAGGAGAAGAGCGTTGGCTC+AGG | 0.528039 | 3_1:+86752185 | Msa0383740:CDS |
| TTGAAAATGTCAATAATGGA+AGG | 0.532716 | 3_1:+86755746 | Msa0383740:exon |
| ACATGCTACACGATATATTG+TGG | 0.532825 | 3_1:-86756037 | None:intergenic |
| AAGAGGCATTCCAGTTTCTA+GGG | 0.532997 | 3_1:+86755395 | Msa0383740:CDS |
| CCGATGGAGCCACTAACGTC+GGG | 0.533408 | 3_1:+86751982 | Msa0383740:CDS |
| TACGTTTAGGAGAAGAGCGT+TGG | 0.533876 | 3_1:+86752179 | Msa0383740:CDS |
| CATGCTACACGATATATTGT+GGG | 0.539080 | 3_1:-86756036 | None:intergenic |
| GTACCATTCTTTGTCCTGCA+TGG | 0.539898 | 3_1:+86755543 | Msa0383740:CDS |
| GGAGCGTGAAGAGATAGCTC+AGG | 0.541686 | 3_1:+86755683 | Msa0383740:CDS |
| AGATTAGATCAGAGAATCCT+GGG | 0.542254 | 3_1:+86753867 | Msa0383740:CDS |
| TTGGTGTCTATGCAATGGAC+TGG | 0.544681 | 3_1:+86753541 | Msa0383740:CDS |
| GGTATTATGATCATCATTCA+CGG | 0.546448 | 3_1:+86753223 | Msa0383740:CDS |
| GTTGGAATGGGTCATGATGA+TGG | 0.547013 | 3_1:+86752210 | Msa0383740:CDS |
| GAATTTGAAGAGACGATGGT+TGG | 0.549605 | 3_1:+86752140 | Msa0383740:CDS |
| TGAGCTATCTCTTCACGCTC+CGG | 0.549656 | 3_1:-86755681 | None:intergenic |
| TTGGCTCAGGATGTTGGAAT+GGG | 0.549982 | 3_1:+86752198 | Msa0383740:CDS |
| GATGATCTAACGGTTAGTGT+TGG | 0.551425 | 3_1:-86751733 | None:intergenic |
| GTTCCATGCAGGACAAAGAA+TGG | 0.551493 | 3_1:-86755546 | None:intergenic |
| TGATAAAGTAACTGATCCAT+TGG | 0.551814 | 3_1:+86755572 | Msa0383740:CDS |
| TTCAAAGGAGCAAACAAAAG+AGG | 0.552589 | 3_1:+86755378 | Msa0383740:CDS |
| GGACCTATTAGAGTTCGAAC+TGG | 0.553822 | 3_1:+86755465 | Msa0383740:CDS |
| ATGGTTGGTTAGGGAAGAAG+AGG | 0.554707 | 3_1:+86752155 | Msa0383740:CDS |
| AAATTCTTCCTCGGAGAAGA+CGG | 0.555599 | 3_1:-86752123 | None:intergenic |
| GTGGTGGCGGAGGAAAGTGG+CGG | 0.556390 | 3_1:-86751915 | None:intergenic |
| ATGCCCTCACATTGAAGTGA+TGG | 0.556636 | 3_1:+86754039 | Msa0383740:CDS |
| GCTCTGAACGCTTTGAGAAG+AGG | 0.558966 | 3_1:-86752024 | None:intergenic |
| TATAAATCTTGTGAAGCCAA+TGG | 0.559126 | 3_1:-86755588 | None:intergenic |
| GTATTATGATCATCATTCAC+GGG | 0.559473 | 3_1:+86753224 | Msa0383740:CDS |
| GCTCCAAGGTTCCAGTTCAA+AGG | 0.560061 | 3_1:+86755363 | Msa0383740:CDS |
| ATAAATATAAACACAACTGT+AGG | 0.561054 | 3_1:+86751788 | Msa0383740:five_prime_UTR |
| GGAGGTAGCGATGGATTACA+TGG | 0.561526 | 3_1:+86753669 | Msa0383740:CDS |
| GTCTTCCATCGATGCGCCGA+TGG | 0.566115 | 3_1:+86751966 | Msa0383740:CDS |
| ACGCCAACTATTGGATGAGA+TGG | 0.572335 | 3_1:-86754103 | None:intergenic |
| ACAGGTCATGGAGGTAGCGA+TGG | 0.580290 | 3_1:+86753660 | Msa0383740:intron |
| GAAGATATGCAGATTTCGCT+AGG | 0.582302 | 3_1:+86753499 | Msa0383740:CDS |
| AGTGAAGTCGTCCCGAAGAG+TGG | 0.585471 | 3_1:+86755845 | Msa0383740:three_prime_UTR |
| GAGTGACCAAAGAGAAAGCA+TGG | 0.586609 | 3_1:-86753893 | None:intergenic |
| ACTTAAGATCACCGTAAACC+GGG | 0.587787 | 3_1:-86752302 | None:intergenic |
| ATGATGATGGTTGTTGCCGG+TGG | 0.596726 | 3_1:+86752223 | Msa0383740:CDS |
| GTGAAGTCGTCCCGAAGAGT+GGG | 0.597513 | 3_1:+86755846 | Msa0383740:three_prime_UTR |
| ATTATCAGGATTTAGGGCCA+CGG | 0.603366 | 3_1:-86756009 | None:intergenic |
| GAACGAACAAGAGAAAAGAG+AGG | 0.604398 | 3_1:-86752074 | None:intergenic |
| AAGTCGTCCCGAAGAGTGGG+TGG | 0.614570 | 3_1:+86755849 | Msa0383740:three_prime_UTR |
| CTACCATCACTTCAATGTGA+GGG | 0.619815 | 3_1:-86754042 | None:intergenic |
| AGTGGGTGGCGGAAGCACAT+AGG | 0.623659 | 3_1:+86755863 | Msa0383740:three_prime_UTR |
| TCAGGACATTATCAACTGGA+TGG | 0.624877 | 3_1:+86755701 | Msa0383740:CDS |
| AGAAAATCGAAGTATTCCAC+CGG | 0.625417 | 3_1:-86752239 | None:intergenic |
| CAACTTTGGTGTCTATGCAA+TGG | 0.631929 | 3_1:+86753536 | Msa0383740:CDS |
| GGAAGAATTTGAAGAGACGA+TGG | 0.637158 | 3_1:+86752136 | Msa0383740:CDS |
| TCTACCATCACTTCAATGTG+AGG | 0.638241 | 3_1:-86754043 | None:intergenic |
| TGTGTAGACGAAGATGAGAG+AGG | 0.642743 | 3_1:-86752046 | None:intergenic |
| TCGTCCCGAAGAGTGGGTGG+CGG | 0.643186 | 3_1:+86755852 | Msa0383740:three_prime_UTR |
| TCGATGGAAGACATCGCTAA+CGG | 0.645152 | 3_1:-86751955 | None:intergenic |
| GCAACCACTTGATCAAGAGA+AGG | 0.648753 | 3_1:-86753699 | None:intergenic |
| TCTCCCTCGTCGGAATAGGA+CGG | 0.656821 | 3_1:+86752095 | Msa0383740:CDS |
| ATAGGTCCTGTGTAGACCAG+AGG | 0.665370 | 3_1:-86755450 | None:intergenic |
| TCTGATCCTCTGGTCTACAC+AGG | 0.667077 | 3_1:+86755444 | Msa0383740:CDS |
| GCCGATGGAGCCACTAACGT+CGG | 0.668941 | 3_1:+86751981 | Msa0383740:CDS |
| GAGCCGTCCTATTCCGACGA+GGG | 0.669047 | 3_1:-86752098 | None:intergenic |
| TTCACGGGCTTAATGAACAC+AGG | 0.671284 | 3_1:+86753239 | Msa0383740:CDS |
| TTCTTCCTCGGAGAAGACGG+TGG | 0.672952 | 3_1:-86752120 | None:intergenic |
| CGGCTCCACCGTCTTCTCCG+AGG | 0.676398 | 3_1:+86752115 | Msa0383740:CDS |
| GTCTATGCAATGGACTGGAT+AGG | 0.677930 | 3_1:+86753546 | Msa0383740:CDS |
| ATGGAAGACATCGCTAACGG+CGG | 0.697848 | 3_1:-86751952 | None:intergenic |
| TTTATTGCTACAGGTCATGG+AGG | 0.706795 | 3_1:+86753651 | Msa0383740:intron |
| GGAGCCGTCCTATTCCGACG+AGG | 0.713676 | 3_1:-86752099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAATTTAATTCTTAA+AGG | + | chr3_1:86752802-86752821 | Msa0383740:intron | 10.0% |
| !! | TTTATGTTTATGATAAAAAT+GGG | + | chr3_1:86752938-86752957 | Msa0383740:intron | 10.0% |
| !! | ATATTTATTTATATGTATTG+GGG | - | chr3_1:86753401-86753420 | None:intergenic | 10.0% |
| !! | ATATAAATAAATATTTCCTA+TGG | + | chr3_1:86753407-86753426 | Msa0383740:intron | 10.0% |
| !! | AACGTATAACAAAATTATAT+TGG | + | chr3_1:86752714-86752733 | Msa0383740:intron | 15.0% |
| !! | GTTTATGTTTATGATAAAAA+TGG | + | chr3_1:86752937-86752956 | Msa0383740:intron | 15.0% |
| !! | TTATGTTTATGATAAAAATG+GGG | + | chr3_1:86752939-86752958 | Msa0383740:intron | 15.0% |
| !!! | CTGAAAAAAAATCATATTTT+GGG | - | chr3_1:86753355-86753374 | None:intergenic | 15.0% |
| !! | CAAAAACATTAAATAGTATT+TGG | - | chr3_1:86753793-86753812 | None:intergenic | 15.0% |
| !! | TTCATAAATTTAATAACAGA+AGG | - | chr3_1:86753967-86753986 | None:intergenic | 15.0% |
| !! | TAAATTTATGAAATCTTTGT+TGG | + | chr3_1:86753975-86753994 | Msa0383740:intron | 15.0% |
| !!! | TAATTTCTACATTTTTATGT+AGG | + | chr3_1:86754009-86754028 | Msa0383740:intron | 15.0% |
| !! | TCTTATAAATCACTATATAA+AGG | + | chr3_1:86754607-86754626 | Msa0383740:intron | 15.0% |
| !! | TTAAATTATATATTGTGTGT+AGG | + | chr3_1:86755930-86755949 | Msa0383740:three_prime_UTR | 15.0% |
| !! | TAAATTATATATTGTGTGTA+GGG | + | chr3_1:86755931-86755950 | Msa0383740:three_prime_UTR | 15.0% |
| !!! | TATTTTTTTAAGAACTACAT+TGG | + | chr3_1:86756087-86756106 | Msa0383740:three_prime_UTR | 15.0% |
| !! | ATAAATATAAACACAACTGT+AGG | + | chr3_1:86751788-86751807 | Msa0383740:five_prime_UTR | 20.0% |
| !!! | CTTGATAATTATGTATGTTA+AGG | + | chr3_1:86752403-86752422 | Msa0383740:intron | 20.0% |
| !! | AGTATATTGATATGCTATAT+TGG | + | chr3_1:86752670-86752689 | Msa0383740:intron | 20.0% |
| !! | ATATACTTCAAAACCAAATT+GGG | - | chr3_1:86752839-86752858 | None:intergenic | 20.0% |
| !! | TATATACTTCAAAACCAAAT+TGG | - | chr3_1:86752840-86752859 | None:intergenic | 20.0% |
| !!! | TTTTGGGAAAATATAAGTAA+AGG | - | chr3_1:86753339-86753358 | None:intergenic | 20.0% |
| !!! | GCTGAAAAAAAATCATATTT+TGG | - | chr3_1:86753356-86753375 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCAGCTTTTGTT+GGG | + | chr3_1:86753363-86753382 | Msa0383740:intron | 20.0% |
| !! | TTATAAGAATCAGAATGATA+GGG | - | chr3_1:86754595-86754614 | None:intergenic | 20.0% |
| !! | TTTATAAGAATCAGAATGAT+AGG | - | chr3_1:86754596-86754615 | None:intergenic | 20.0% |
| !! | ATTATGAATCTGTTAGATAT+AGG | - | chr3_1:86754845-86754864 | None:intergenic | 20.0% |
| !! | ATATCTAACAGATTCATAAT+AGG | + | chr3_1:86754845-86754864 | Msa0383740:intron | 20.0% |
| !! | TTCACAAGATTTATACAATA+AGG | + | chr3_1:86755596-86755615 | Msa0383740:CDS | 20.0% |
| !!! | TTTCAAATTTTTCGATTGAT+TGG | + | chr3_1:86756059-86756078 | Msa0383740:three_prime_UTR | 20.0% |
| ! | CTTTGCATATTGAAATTTGA+AGG | + | chr3_1:86752377-86752396 | Msa0383740:intron | 25.0% |
| !!! | GTTTTGGTTTAGATTTTTGA+TGG | + | chr3_1:86752476-86752495 | Msa0383740:intron | 25.0% |
| ! | GAACTTCAATTTCACAAATT+TGG | - | chr3_1:86752511-86752530 | None:intergenic | 25.0% |
| ! | TTGTGAAATTGAAGTTCAAT+TGG | + | chr3_1:86752514-86752533 | Msa0383740:intron | 25.0% |
| ! | TTGAAATTGTGAGATTTCTA+AGG | + | chr3_1:86752567-86752586 | Msa0383740:intron | 25.0% |
| ! | TCTAAGGAAAATTTAGAAAC+TGG | + | chr3_1:86752583-86752602 | Msa0383740:intron | 25.0% |
| ! | CTAAGGAAAATTTAGAAACT+GGG | + | chr3_1:86752584-86752603 | Msa0383740:intron | 25.0% |
| !!! | GTCTTTTTGTTTGAAGAAAA+TGG | + | chr3_1:86752762-86752781 | Msa0383740:intron | 25.0% |
| !!! | ATTGATTTTTTAGAACTGCA+GGG | - | chr3_1:86752791-86752810 | None:intergenic | 25.0% |
| !!! | AATTGATTTTTTAGAACTGC+AGG | - | chr3_1:86752792-86752811 | None:intergenic | 25.0% |
| ! | TATACTTCAAAACCAAATTG+GGG | - | chr3_1:86752838-86752857 | None:intergenic | 25.0% |
| !!! | AAAAAGAGAGATTTTAATCG+AGG | - | chr3_1:86753033-86753052 | None:intergenic | 25.0% |
| !! | ATTTTCACTTATGTTCTTTC+AGG | + | chr3_1:86753200-86753219 | Msa0383740:intron | 25.0% |
| !! | TTTTCACTTATGTTCTTTCA+GGG | + | chr3_1:86753201-86753220 | Msa0383740:intron | 25.0% |
| !!! | GATTTTTTTTCAGCTTTTGT+TGG | + | chr3_1:86753362-86753381 | Msa0383740:intron | 25.0% |
| !!! | TTTTTTTTCAGCTTTTGTTG+GGG | + | chr3_1:86753364-86753383 | Msa0383740:intron | 25.0% |
| ! | AGATGATGATATGAAGTATA+AGG | - | chr3_1:86753605-86753624 | None:intergenic | 25.0% |
| !!! | TTATTTCGTTTTATTGCTAC+AGG | + | chr3_1:86753642-86753661 | Msa0383740:intron | 25.0% |
| ! | TGATCGTGATAATATTAACA+GGG | + | chr3_1:86753830-86753849 | Msa0383740:intron | 25.0% |
| !! | TTTCTACATTTTTATGTAGG+CGG | + | chr3_1:86754012-86754031 | Msa0383740:intron | 25.0% |
| ! | TCGATAAATTCAAATGAATC+AGG | - | chr3_1:86754363-86754382 | None:intergenic | 25.0% |
| ! | TACTATGTAAAATAACAGCT+AGG | - | chr3_1:86754408-86754427 | None:intergenic | 25.0% |
| ! | TATAAGAATCAGAATGATAG+GGG | - | chr3_1:86754594-86754613 | None:intergenic | 25.0% |
| ! | TACAAAGTTGACAAAAAAAG+CGG | - | chr3_1:86754645-86754664 | None:intergenic | 25.0% |
| ! | AAATGAACAAAAAAAGTGGT+TGG | - | chr3_1:86754671-86754690 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTTTGTTCATT+TGG | + | chr3_1:86754670-86754689 | Msa0383740:intron | 25.0% |
| ! | AACCAAATGAACAAAAAAAG+TGG | - | chr3_1:86754675-86754694 | None:intergenic | 25.0% |
| ! | TAGATGATATATGAGCTTAT+AGG | + | chr3_1:86754728-86754747 | Msa0383740:intron | 25.0% |
| ! | ATCAGGATTCAATTATGAAT+CGG | - | chr3_1:86754900-86754919 | None:intergenic | 25.0% |
| ! | TAAATAAGCCTAGGAAATAA+AGG | - | chr3_1:86755046-86755065 | None:intergenic | 25.0% |
| !! | AAGACATTTTAAATAAGCCT+AGG | - | chr3_1:86755055-86755074 | None:intergenic | 25.0% |
| ! | AAACATGATCAATGCTTAAA+TGG | - | chr3_1:86755142-86755161 | None:intergenic | 25.0% |
| !! | ATCATGTTTTCTTTGATGAA+GGG | + | chr3_1:86755153-86755172 | Msa0383740:intron | 25.0% |
| ! | CAGAAAATCTTAAGATTATG+TGG | + | chr3_1:86755206-86755225 | Msa0383740:intron | 25.0% |
| ! | CTGAATCATGTTTATTGTAA+TGG | + | chr3_1:86755234-86755253 | Msa0383740:intron | 25.0% |
| ! | TTCATGCGTTAAAACTTAAA+AGG | + | chr3_1:86755292-86755311 | Msa0383740:intron | 25.0% |
| !! | AAAGACATAAAGCTTTATGA+TGG | + | chr3_1:86755633-86755652 | Msa0383740:CDS | 25.0% |
| ! | GCATTTGAAAATGTCAATAA+TGG | + | chr3_1:86755742-86755761 | Msa0383740:exon | 25.0% |
| !! | TTGAAAATGTCAATAATGGA+AGG | + | chr3_1:86755746-86755765 | Msa0383740:exon | 25.0% |
| ! | TGAATGTACAAATTTCTCAA+TGG | - | chr3_1:86755965-86755984 | None:intergenic | 25.0% |
| ! | GGATTTATTATCAGGATTTA+GGG | - | chr3_1:86756018-86756037 | None:intergenic | 25.0% |
| ! | ATATTGTGGGATTTATTATC+AGG | - | chr3_1:86756026-86756045 | None:intergenic | 25.0% |
| ACCGTTAGATCATCAATAAA+CGG | + | chr3_1:86751742-86751761 | Msa0383740:five_prime_UTR | 30.0% | |
| ! | TCCGTTTATTGATGATCTAA+CGG | - | chr3_1:86751746-86751765 | None:intergenic | 30.0% |
| ! | CTTTGAGAAGAGGAATTATA+CGG | - | chr3_1:86752017-86752036 | None:intergenic | 30.0% |
| ! | TGGAATACTTCGATTTTCTA+TGG | + | chr3_1:86752243-86752262 | Msa0383740:CDS | 30.0% |
| ACGTGATGATAGAAAATTGA+AGG | + | chr3_1:86752542-86752561 | Msa0383740:intron | 30.0% | |
| CGTGATGATAGAAAATTGAA+GGG | + | chr3_1:86752543-86752562 | Msa0383740:intron | 30.0% | |
| !!! | TTGATTTTTTAGAACTGCAG+GGG | - | chr3_1:86752790-86752809 | None:intergenic | 30.0% |
| ! | TATTCATCATGTTAGTCTCT+AGG | + | chr3_1:86752893-86752912 | Msa0383740:intron | 30.0% |
| !! | ATAAAAATGGGGTACTGTAT+TGG | + | chr3_1:86752950-86752969 | Msa0383740:intron | 30.0% |
| !! | GAGATTTTAATCGAGGATTT+GGG | - | chr3_1:86753026-86753045 | None:intergenic | 30.0% |
| !! | AGAGATTTTAATCGAGGATT+TGG | - | chr3_1:86753027-86753046 | None:intergenic | 30.0% |
| ACCCAAACAAAATAACGAAA+GGG | - | chr3_1:86753132-86753151 | None:intergenic | 30.0% | |
| AACCCAAACAAAATAACGAA+AGG | - | chr3_1:86753133-86753152 | None:intergenic | 30.0% | |
| TTTCACTTATGTTCTTTCAG+GGG | + | chr3_1:86753202-86753221 | Msa0383740:intron | 30.0% | |
| GGTATTATGATCATCATTCA+CGG | + | chr3_1:86753223-86753242 | Msa0383740:CDS | 30.0% | |
| GTATTATGATCATCATTCAC+GGG | + | chr3_1:86753224-86753243 | Msa0383740:CDS | 30.0% | |
| ACAACAAGTAACAACAATTG+AGG | - | chr3_1:86753302-86753321 | None:intergenic | 30.0% | |
| ! | TCAATTGTTGTTACTTGTTG+TGG | + | chr3_1:86753301-86753320 | Msa0383740:intron | 30.0% |
| !! | CAATTGTTGTTACTTGTTGT+GGG | + | chr3_1:86753302-86753321 | Msa0383740:intron | 30.0% |
| !!! | TTTTTTTCAGCTTTTGTTGG+GGG | + | chr3_1:86753365-86753384 | Msa0383740:intron | 30.0% |
| CTTATCTTAGAAACAACCAT+AGG | - | chr3_1:86753426-86753445 | None:intergenic | 30.0% | |
| AAAACGAAATAACTTCAGAC+CGG | - | chr3_1:86753634-86753653 | None:intergenic | 30.0% | |
| CTGATCGTGATAATATTAAC+AGG | + | chr3_1:86753829-86753848 | Msa0383740:intron | 30.0% | |
| GACATTAACAGTTGAAAAGA+AGG | - | chr3_1:86754277-86754296 | None:intergenic | 30.0% | |
| TCTCTAGTGTGTATCTTTAT+TGG | + | chr3_1:86754549-86754568 | Msa0383740:intron | 30.0% | |
| ! | TGTTCATTTGGTTTATGACT+TGG | + | chr3_1:86754682-86754701 | Msa0383740:intron | 30.0% |
| TTCATAATAGGATTCGATTC+AGG | + | chr3_1:86754857-86754876 | Msa0383740:intron | 30.0% | |
| TATGAGCCTAAATATGAGAA+GGG | - | chr3_1:86755111-86755130 | None:intergenic | 30.0% | |
| TCAATGCTTAAATGGAAAGA+AGG | - | chr3_1:86755134-86755153 | None:intergenic | 30.0% | |
| ! | GATCATGTTTTCTTTGATGA+AGG | + | chr3_1:86755152-86755171 | Msa0383740:intron | 30.0% |
| AAAGCACAAAGTACATTCAA+AGG | - | chr3_1:86755265-86755284 | None:intergenic | 30.0% | |
| ATGATATTCGCAGTATTTCA+TGG | - | chr3_1:86755491-86755510 | None:intergenic | 30.0% | |
| TGATAAAGTAACTGATCCAT+TGG | + | chr3_1:86755572-86755591 | Msa0383740:CDS | 30.0% | |
| TATAAATCTTGTGAAGCCAA+TGG | - | chr3_1:86755591-86755610 | None:intergenic | 30.0% | |
| ! | AACTTTGGTAGTTAGAAAGT+TGG | - | chr3_1:86755810-86755829 | None:intergenic | 30.0% |
| AACTTTCTAACTACCAAAGT+TGG | + | chr3_1:86755809-86755828 | Msa0383740:three_prime_UTR | 30.0% | |
| GAGAAATTTGTACATTCAAC+TGG | + | chr3_1:86755967-86755986 | Msa0383740:three_prime_UTR | 30.0% | |
| ! | TAAATTTCAGTGATTTTCCG+TGG | + | chr3_1:86755992-86756011 | Msa0383740:three_prime_UTR | 30.0% |
| GGGATTTATTATCAGGATTT+AGG | - | chr3_1:86756019-86756038 | None:intergenic | 30.0% | |
| ! | AGAAAATCGAAGTATTCCAC+CGG | - | chr3_1:86752242-86752261 | None:intergenic | 35.0% |
| TACTTAAGATCACCGTAAAC+CGG | - | chr3_1:86752306-86752325 | None:intergenic | 35.0% | |
| GTTTACGGTGATCTTAAGTA+AGG | + | chr3_1:86752306-86752325 | Msa0383740:intron | 35.0% | |
| AAGCTTCATAGTGTGAAAAG+AGG | + | chr3_1:86752453-86752472 | Msa0383740:intron | 35.0% | |
| AGCTTCATAGTGTGAAAAGA+GGG | + | chr3_1:86752454-86752473 | Msa0383740:intron | 35.0% | |
| ! | ATAGTGTGAAAAGAGGGTTT+TGG | + | chr3_1:86752460-86752479 | Msa0383740:intron | 35.0% |
| AACTGGGTAGATCGAATTAT+TGG | + | chr3_1:86752600-86752619 | Msa0383740:intron | 35.0% | |
| CATAAAACAACTGCATGTGA+AGG | - | chr3_1:86752743-86752762 | None:intergenic | 35.0% | |
| !! | TTGTACTGAAGAGTGTTAGA+TGG | + | chr3_1:86753000-86753019 | Msa0383740:intron | 35.0% |
| !! | AGCCCTTTCGTTATTTTGTT+TGG | + | chr3_1:86753127-86753146 | Msa0383740:intron | 35.0% |
| !! | GCCCTTTCGTTATTTTGTTT+GGG | + | chr3_1:86753128-86753147 | Msa0383740:intron | 35.0% |
| TTCTATTCCATACAGTTGTG+CGG | + | chr3_1:86753151-86753170 | Msa0383740:intron | 35.0% | |
| !! | ATGAGTTCTGAGTCAGAATT+GGG | - | chr3_1:86753470-86753489 | None:intergenic | 35.0% |
| !! | AATGAGTTCTGAGTCAGAAT+TGG | - | chr3_1:86753471-86753490 | None:intergenic | 35.0% |
| !! | ACTCAGAACTCATTTTTCAG+CGG | + | chr3_1:86753477-86753496 | Msa0383740:intron | 35.0% |
| CAGTTAACATTGTGCAACTT+TGG | + | chr3_1:86753522-86753541 | Msa0383740:CDS | 35.0% | |
| CATATCATCATCTTTGTGTC+CGG | + | chr3_1:86753612-86753631 | Msa0383740:intron | 35.0% | |
| ATATTAACAGGGAGCTTTCT+TGG | + | chr3_1:86753841-86753860 | Msa0383740:intron | 35.0% | |
| AAGATTAGATCAGAGAATCC+TGG | + | chr3_1:86753866-86753885 | Msa0383740:CDS | 35.0% | |
| AGATTAGATCAGAGAATCCT+GGG | + | chr3_1:86753867-86753886 | Msa0383740:CDS | 35.0% | |
| TAACAGTTGAAAAGAAGGCA+GGG | - | chr3_1:86754272-86754291 | None:intergenic | 35.0% | |
| TTAACAGTTGAAAAGAAGGC+AGG | - | chr3_1:86754273-86754292 | None:intergenic | 35.0% | |
| TGTGTCGTAGTATCTTGATT+TGG | + | chr3_1:86754499-86754518 | Msa0383740:intron | 35.0% | |
| AAGTTGACAAAAAAAGCGGT+TGG | - | chr3_1:86754641-86754660 | None:intergenic | 35.0% | |
| TGTTAGTTACTTATGCCCTT+AGG | + | chr3_1:86754816-86754835 | Msa0383740:intron | 35.0% | |
| GTTAGATATAGGACTCCTAA+GGG | - | chr3_1:86754834-86754853 | None:intergenic | 35.0% | |
| TGTTAGATATAGGACTCCTA+AGG | - | chr3_1:86754835-86754854 | None:intergenic | 35.0% | |
| !! | AATAAGAGCACTAGATGCAA+GGG | - | chr3_1:86754989-86755008 | None:intergenic | 35.0% |
| !! | AAATAAGAGCACTAGATGCA+AGG | - | chr3_1:86754990-86755009 | None:intergenic | 35.0% |
| !! | TGCTCTTATTTCTGTTCTGT+TGG | + | chr3_1:86754999-86755018 | Msa0383740:intron | 35.0% |
| GTATGAGCCTAAATATGAGA+AGG | - | chr3_1:86755112-86755131 | None:intergenic | 35.0% | |
| ! | TGTTGCTCCAATATTTTCTC+TGG | + | chr3_1:86755338-86755357 | Msa0383740:CDS | 35.0% |
| !! | TTTTGTTTGCTCCTTTGAAC+TGG | - | chr3_1:86755377-86755396 | None:intergenic | 35.0% |
| TTCAAAGGAGCAAACAAAAG+AGG | + | chr3_1:86755378-86755397 | Msa0383740:CDS | 35.0% | |
| AGAAGTCAGCACCAAAAAAA+AGG | + | chr3_1:86755776-86755795 | Msa0383740:three_prime_UTR | 35.0% | |
| GAAGTCAGCACCAAAAAAAA+GGG | + | chr3_1:86755777-86755796 | Msa0383740:three_prime_UTR | 35.0% | |
| AAGTCAGCACCAAAAAAAAG+GGG | + | chr3_1:86755778-86755797 | Msa0383740:three_prime_UTR | 35.0% | |
| CATGCTACACGATATATTGT+GGG | - | chr3_1:86756039-86756058 | None:intergenic | 35.0% | |
| ACATGCTACACGATATATTG+TGG | - | chr3_1:86756040-86756059 | None:intergenic | 35.0% | |
| GATGATCTAACGGTTAGTGT+TGG | - | chr3_1:86751736-86751755 | None:intergenic | 40.0% | |
| AAGAGGAATTATACGGTTGC+TGG | - | chr3_1:86752010-86752029 | None:intergenic | 40.0% | |
| GAACGAACAAGAGAAAAGAG+AGG | - | chr3_1:86752077-86752096 | None:intergenic | 40.0% | |
| AAATTCTTCCTCGGAGAAGA+CGG | - | chr3_1:86752126-86752145 | None:intergenic | 40.0% | |
| CGTCTCTTCAAATTCTTCCT+CGG | - | chr3_1:86752135-86752154 | None:intergenic | 40.0% | |
| GGAAGAATTTGAAGAGACGA+TGG | + | chr3_1:86752136-86752155 | Msa0383740:CDS | 40.0% | |
| GAATTTGAAGAGACGATGGT+TGG | + | chr3_1:86752140-86752159 | Msa0383740:CDS | 40.0% | |
| !!! | ATGCTTTGTTTTGTCGCTCT+TGG | + | chr3_1:86752277-86752296 | Msa0383740:CDS | 40.0% |
| ACTTAAGATCACCGTAAACC+GGG | - | chr3_1:86752305-86752324 | None:intergenic | 40.0% | |
| TCAAAACCAAATTGGGGAGA+TGG | - | chr3_1:86752832-86752851 | None:intergenic | 40.0% | |
| !! | GATTGATTTGCCATTGCATG+AGG | + | chr3_1:86753076-86753095 | Msa0383740:intron | 40.0% |
| ATTTGCCATTGCATGAGGAA+TGG | + | chr3_1:86753081-86753100 | Msa0383740:intron | 40.0% | |
| TCTATCCATTCCTCATGCAA+TGG | - | chr3_1:86753089-86753108 | None:intergenic | 40.0% | |
| GATAGAAAACCCCTGCTTAT+TGG | + | chr3_1:86753103-86753122 | Msa0383740:intron | 40.0% | |
| GAAGATATGCAGATTTCGCT+AGG | + | chr3_1:86753499-86753518 | Msa0383740:CDS | 40.0% | |
| !! | CAACTTTGGTGTCTATGCAA+TGG | + | chr3_1:86753536-86753555 | Msa0383740:CDS | 40.0% |
| !! | CGTTTTATTGCTACAGGTCA+TGG | + | chr3_1:86753648-86753667 | Msa0383740:intron | 40.0% |
| TTTATTGCTACAGGTCATGG+AGG | + | chr3_1:86753651-86753670 | Msa0383740:intron | 40.0% | |
| TGTTCCTTCTCTTGATCAAG+TGG | + | chr3_1:86753695-86753714 | Msa0383740:CDS | 40.0% | |
| TTTCTCTTTGGTCACTCAAC+TGG | + | chr3_1:86753899-86753918 | Msa0383740:CDS | 40.0% | |
| CTACCATCACTTCAATGTGA+GGG | - | chr3_1:86754045-86754064 | None:intergenic | 40.0% | |
| TCTACCATCACTTCAATGTG+AGG | - | chr3_1:86754046-86754065 | None:intergenic | 40.0% | |
| CACATTGAAGTGATGGTAGA+AGG | + | chr3_1:86754046-86754065 | Msa0383740:CDS | 40.0% | |
| AAGCCATCTCATCCAATAGT+TGG | + | chr3_1:86754100-86754119 | Msa0383740:CDS | 40.0% | |
| GCAAAACTTACGCCAACTAT+TGG | - | chr3_1:86754115-86754134 | None:intergenic | 40.0% | |
| CAGTAGTATGATGTGAGCTT+TGG | + | chr3_1:86754325-86754344 | Msa0383740:intron | 40.0% | |
| GATAAACCTGACTAGATCTG+AGG | + | chr3_1:86754430-86754449 | Msa0383740:intron | 40.0% | |
| TGGCACAAAACTGAACTCAA+TGG | + | chr3_1:86754519-86754538 | Msa0383740:intron | 40.0% | |
| ACACTGTGAGTGGTTAAATC+AGG | - | chr3_1:86754917-86754936 | None:intergenic | 40.0% | |
| ACTCACATTTACACTGTGAG+TGG | - | chr3_1:86754927-86754946 | None:intergenic | 40.0% | |
| ACTCACAGTGTAAATGTGAG+TGG | + | chr3_1:86754926-86754945 | Msa0383740:intron | 40.0% | |
| GGCATGAATGATGCTAAAAC+CGG | + | chr3_1:86755020-86755039 | Msa0383740:intron | 40.0% | |
| ! | AAAACCGGCCTTTATTTCCT+AGG | + | chr3_1:86755035-86755054 | Msa0383740:intron | 40.0% |
| TAAGCCTAGGAAATAAAGGC+CGG | - | chr3_1:86755042-86755061 | None:intergenic | 40.0% | |
| CCTAAATATGAGAAGGGATG+TGG | - | chr3_1:86755105-86755124 | None:intergenic | 40.0% | |
| CCACATCCCTTCTCATATTT+AGG | + | chr3_1:86755102-86755121 | Msa0383740:intron | 40.0% | |
| GGAGCTACCAGAGAAAATAT+TGG | - | chr3_1:86755348-86755367 | None:intergenic | 40.0% | |
| ! | TATTTTCTCTGGTAGCTCCA+AGG | + | chr3_1:86755349-86755368 | Msa0383740:CDS | 40.0% |
| !! | AAAGAGGCATTCCAGTTTCT+AGG | + | chr3_1:86755394-86755413 | Msa0383740:CDS | 40.0% |
| !! | AAGAGGCATTCCAGTTTCTA+GGG | + | chr3_1:86755395-86755414 | Msa0383740:CDS | 40.0% |
| TAGCTCAGGACATTATCAAC+TGG | + | chr3_1:86755697-86755716 | Msa0383740:CDS | 40.0% | |
| TCAGGACATTATCAACTGGA+TGG | + | chr3_1:86755701-86755720 | Msa0383740:CDS | 40.0% | |
| AGTCAGCACCAAAAAAAAGG+GGG | + | chr3_1:86755779-86755798 | Msa0383740:three_prime_UTR | 40.0% | |
| TTCTACACACTTGCCAACTT+TGG | - | chr3_1:86755825-86755844 | None:intergenic | 40.0% | |
| ! | ATTATCAGGATTTAGGGCCA+CGG | - | chr3_1:86756012-86756031 | None:intergenic | 40.0% |
| TCGATGGAAGACATCGCTAA+CGG | - | chr3_1:86751958-86751977 | None:intergenic | 45.0% | |
| TGTGTAGACGAAGATGAGAG+AGG | - | chr3_1:86752049-86752068 | None:intergenic | 45.0% | |
| ! | TGAAGAGACGATGGTTGGTT+AGG | + | chr3_1:86752145-86752164 | Msa0383740:CDS | 45.0% |
| ! | GAAGAGACGATGGTTGGTTA+GGG | + | chr3_1:86752146-86752165 | Msa0383740:CDS | 45.0% |
| ! | ATGGTTGGTTAGGGAAGAAG+AGG | + | chr3_1:86752155-86752174 | Msa0383740:CDS | 45.0% |
| GGGAAGAAGAGGATACGTTT+AGG | + | chr3_1:86752166-86752185 | Msa0383740:CDS | 45.0% | |
| ! | TACGTTTAGGAGAAGAGCGT+TGG | + | chr3_1:86752179-86752198 | Msa0383740:CDS | 45.0% |
| TTGGCTCAGGATGTTGGAAT+GGG | + | chr3_1:86752198-86752217 | Msa0383740:CDS | 45.0% | |
| GTTGGAATGGGTCATGATGA+TGG | + | chr3_1:86752210-86752229 | Msa0383740:CDS | 45.0% | |
| !! | GTCATGATGATGGTTGTTGC+CGG | + | chr3_1:86752220-86752239 | Msa0383740:CDS | 45.0% |
| TGCGGCTCTCTTTAAACACT+TGG | + | chr3_1:86753169-86753188 | Msa0383740:intron | 45.0% | |
| TTCACGGGCTTAATGAACAC+AGG | + | chr3_1:86753239-86753258 | Msa0383740:CDS | 45.0% | |
| ! | GTTCTGAGTCAGAATTGGGT+GGG | - | chr3_1:86753466-86753485 | None:intergenic | 45.0% |
| !! | AGTTCTGAGTCAGAATTGGG+TGG | - | chr3_1:86753467-86753486 | None:intergenic | 45.0% |
| ! | TTGGTGTCTATGCAATGGAC+TGG | + | chr3_1:86753541-86753560 | Msa0383740:CDS | 45.0% |
| !! | GTCTATGCAATGGACTGGAT+AGG | + | chr3_1:86753546-86753565 | Msa0383740:CDS | 45.0% |
| GCAACCACTTGATCAAGAGA+AGG | - | chr3_1:86753702-86753721 | None:intergenic | 45.0% | |
| ! | AAGAGAAAGCATGGTATCCC+AGG | - | chr3_1:86753887-86753906 | None:intergenic | 45.0% |
| GGGATACCATGCTTTCTCTT+TGG | + | chr3_1:86753887-86753906 | Msa0383740:CDS | 45.0% | |
| GAGTGACCAAAGAGAAAGCA+TGG | - | chr3_1:86753896-86753915 | None:intergenic | 45.0% | |
| TCTTTGGTCACTCAACTGGA+GGG | + | chr3_1:86753903-86753922 | Msa0383740:CDS | 45.0% | |
| ATGCCCTCACATTGAAGTGA+TGG | + | chr3_1:86754039-86754058 | Msa0383740:CDS | 45.0% | |
| ACGCCAACTATTGGATGAGA+TGG | - | chr3_1:86754106-86754125 | None:intergenic | 45.0% | |
| ! | GGCGTAAGTTTTGCACTTCT+TGG | + | chr3_1:86754121-86754140 | Msa0383740:intron | 45.0% |
| ! | TGTTGCTTCTGTGCTCAGTT+TGG | + | chr3_1:86754180-86754199 | Msa0383740:intron | 45.0% |
| ! | GATGTGTAACGTGTTGATGC+AGG | + | chr3_1:86755314-86755333 | Msa0383740:intron | 45.0% |
| TACTTTGCCAACAAAGCTGC+TGG | - | chr3_1:86755423-86755442 | None:intergenic | 45.0% | |
| GGACCTATTAGAGTTCGAAC+TGG | + | chr3_1:86755465-86755484 | Msa0383740:CDS | 45.0% | |
| TGGCCAGTTCGAACTCTAAT+AGG | - | chr3_1:86755471-86755490 | None:intergenic | 45.0% | |
| GTACCATTCTTTGTCCTGCA+TGG | + | chr3_1:86755543-86755562 | Msa0383740:CDS | 45.0% | |
| GTTCCATGCAGGACAAAGAA+TGG | - | chr3_1:86755549-86755568 | None:intergenic | 45.0% | |
| CTTTATCAGCAGTTCCATGC+AGG | - | chr3_1:86755560-86755579 | None:intergenic | 45.0% | |
| !!! | TGGCAACACCCCCTTTTTTT+TGG | - | chr3_1:86755790-86755809 | None:intergenic | 45.0% |
| !! | AATATTTATTTATATGTATT+GGG | - | chr3_1:86753402-86753421 | None:intergenic | 5.0% |
| !! | AAATATTTATTTATATGTAT+TGG | - | chr3_1:86753403-86753422 | None:intergenic | 5.0% |
| !!! | TAAAAATATCATATTTTTAT+TGG | + | chr3_1:86754775-86754794 | Msa0383740:intron | 5.0% |
| !!! | ATTCATATTTTATTTTATTT+AGG | + | chr3_1:86755888-86755907 | Msa0383740:three_prime_UTR | 5.0% |
| ATGGAAGACATCGCTAACGG+CGG | - | chr3_1:86751955-86751974 | None:intergenic | 50.0% | |
| !! | GCTCTGAACGCTTTGAGAAG+AGG | - | chr3_1:86752027-86752046 | None:intergenic | 50.0% |
| TCTTGTTCGTTCTCCCTCGT+CGG | + | chr3_1:86752085-86752104 | Msa0383740:CDS | 50.0% | |
| ! | GTTGGCTCAGGATGTTGGAA+TGG | + | chr3_1:86752197-86752216 | Msa0383740:CDS | 50.0% |
| !! | ATGATGATGGTTGTTGCCGG+TGG | + | chr3_1:86752223-86752242 | Msa0383740:CDS | 50.0% |
| ! | GTTTTGTCGCTCTTGGTTCC+CGG | + | chr3_1:86752284-86752303 | Msa0383740:CDS | 50.0% |
| GGATCACCATCTCCCCAATT+TGG | + | chr3_1:86752823-86752842 | Msa0383740:intron | 50.0% | |
| AAAGGGCTGCCAATAAGCAG+GGG | - | chr3_1:86753115-86753134 | None:intergenic | 50.0% | |
| GAAAGGGCTGCCAATAAGCA+GGG | - | chr3_1:86753116-86753135 | None:intergenic | 50.0% | |
| AAGAGAGCCGCACAACTGTA+TGG | - | chr3_1:86753161-86753180 | None:intergenic | 50.0% | |
| ! | CAGCTTTTGTTGGGGGTCTT+CGG | + | chr3_1:86753372-86753391 | Msa0383740:intron | 50.0% |
| ! | AGCTTTTGTTGGGGGTCTTC+GGG | + | chr3_1:86753373-86753392 | Msa0383740:intron | 50.0% |
| !! | GGAGGTAGCGATGGATTACA+TGG | + | chr3_1:86753669-86753688 | Msa0383740:CDS | 50.0% |
| CTCTTTGGTCACTCAACTGG+AGG | + | chr3_1:86753902-86753921 | Msa0383740:CDS | 50.0% | |
| CTTTGGTCACTCAACTGGAG+GGG | + | chr3_1:86753904-86753923 | Msa0383740:CDS | 50.0% | |
| AGGCAGGGATGCTTCTTTCA+TGG | - | chr3_1:86754257-86754276 | None:intergenic | 50.0% | |
| TGAGTGCCTCAGATCTAGTC+AGG | - | chr3_1:86754439-86754458 | None:intergenic | 50.0% | |
| GCTCCAAGGTTCCAGTTCAA+AGG | + | chr3_1:86755363-86755382 | Msa0383740:CDS | 50.0% | |
| GCTCCTTTGAACTGGAACCT+TGG | - | chr3_1:86755369-86755388 | None:intergenic | 50.0% | |
| ! | TAGGGATCCAGCAGCTTTGT+TGG | + | chr3_1:86755413-86755432 | Msa0383740:CDS | 50.0% |
| ! | GGCAAAGTACTCTGATCCTC+TGG | + | chr3_1:86755434-86755453 | Msa0383740:CDS | 50.0% |
| TCTGATCCTCTGGTCTACAC+AGG | + | chr3_1:86755444-86755463 | Msa0383740:CDS | 50.0% | |
| ATAGGTCCTGTGTAGACCAG+AGG | - | chr3_1:86755453-86755472 | None:intergenic | 50.0% | |
| !! | GCACGACCTTTTGTTTGAGC+CGG | + | chr3_1:86755662-86755681 | Msa0383740:CDS | 50.0% |
| TGAGCTATCTCTTCACGCTC+CGG | - | chr3_1:86755684-86755703 | None:intergenic | 50.0% | |
| TCGTTCTCCCTCGTCGGAAT+AGG | + | chr3_1:86752091-86752110 | Msa0383740:CDS | 55.0% | |
| TCTCCCTCGTCGGAATAGGA+CGG | + | chr3_1:86752095-86752114 | Msa0383740:CDS | 55.0% | |
| TTCTTCCTCGGAGAAGACGG+TGG | - | chr3_1:86752123-86752142 | None:intergenic | 55.0% | |
| !! | TAGGAGAAGAGCGTTGGCTC+AGG | + | chr3_1:86752185-86752204 | Msa0383740:CDS | 55.0% |
| !! | AGAGCGTTGGCTCAGGATGT+TGG | + | chr3_1:86752192-86752211 | Msa0383740:CDS | 55.0% |
| CGCTCTTGGTTCCCGGTTTA+CGG | + | chr3_1:86752291-86752310 | Msa0383740:CDS | 55.0% | |
| CGAAAGGGCTGCCAATAAGC+AGG | - | chr3_1:86753117-86753136 | None:intergenic | 55.0% | |
| ACAGGTCATGGAGGTAGCGA+TGG | + | chr3_1:86753660-86753679 | Msa0383740:intron | 55.0% | |
| GATGGCTTCACACGCAAAGC+TGG | - | chr3_1:86754088-86754107 | None:intergenic | 55.0% | |
| GCTGCTGGATCCCTAGAAAC+TGG | - | chr3_1:86755408-86755427 | None:intergenic | 55.0% | |
| CACGCTCCGGCTCAAACAAA+AGG | - | chr3_1:86755671-86755690 | None:intergenic | 55.0% | |
| GGAGCGTGAAGAGATAGCTC+AGG | + | chr3_1:86755683-86755702 | Msa0383740:CDS | 55.0% | |
| AGTGAAGTCGTCCCGAAGAG+TGG | + | chr3_1:86755845-86755864 | Msa0383740:three_prime_UTR | 55.0% | |
| GTGAAGTCGTCCCGAAGAGT+GGG | + | chr3_1:86755846-86755865 | Msa0383740:three_prime_UTR | 55.0% | |
| GAAGACATCGCTAACGGCGG+CGG | - | chr3_1:86751952-86751971 | None:intergenic | 60.0% | |
| GTCTTCCATCGATGCGCCGA+TGG | + | chr3_1:86751966-86751985 | Msa0383740:CDS | 60.0% | |
| GCCGATGGAGCCACTAACGT+CGG | + | chr3_1:86751981-86752000 | Msa0383740:CDS | 60.0% | |
| CCCGACGTTAGTGGCTCCAT+CGG | - | chr3_1:86751985-86752004 | None:intergenic | 60.0% | |
| CCGATGGAGCCACTAACGTC+GGG | + | chr3_1:86751982-86752001 | Msa0383740:CDS | 60.0% | |
| !! | TTGCTGGCTCCCGACGTTAG+TGG | - | chr3_1:86751994-86752013 | None:intergenic | 60.0% |
| GAGCCGTCCTATTCCGACGA+GGG | - | chr3_1:86752101-86752120 | None:intergenic | 60.0% | |
| TCACTCAACTGGAGGGGCTG+TGG | + | chr3_1:86753910-86753929 | Msa0383740:CDS | 60.0% | |
| GATGCAAGGGACGCGATGCT+GGG | - | chr3_1:86754976-86754995 | None:intergenic | 60.0% | |
| AGATGCAAGGGACGCGATGC+TGG | - | chr3_1:86754977-86754996 | None:intergenic | 60.0% | |
| AAGTCGTCCCGAAGAGTGGG+TGG | + | chr3_1:86755849-86755868 | Msa0383740:three_prime_UTR | 60.0% | |
| TGCTTCCGCCACCCACTCTT+CGG | - | chr3_1:86755860-86755879 | None:intergenic | 60.0% | |
| !! | AGTGGGTGGCGGAAGCACAT+AGG | + | chr3_1:86755863-86755882 | Msa0383740:three_prime_UTR | 60.0% |
| !! | GTGGTGGCGGAGGAAAGTGG+CGG | - | chr3_1:86751918-86751937 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGCGGAGGAAAG+TGG | - | chr3_1:86751921-86751940 | None:intergenic | 65.0% |
| TGGCTCCATCGGCGCATCGA+TGG | - | chr3_1:86751974-86751993 | None:intergenic | 65.0% | |
| GGAGCCGTCCTATTCCGACG+AGG | - | chr3_1:86752102-86752121 | None:intergenic | 65.0% | |
| TCGTCCCGAAGAGTGGGTGG+CGG | + | chr3_1:86755852-86755871 | Msa0383740:three_prime_UTR | 65.0% | |
| GCTTCCGCCACCCACTCTTC+GGG | - | chr3_1:86755859-86755878 | None:intergenic | 65.0% | |
| !! | AGTGGCGGTGGCGGAGGAAG+CGG | - | chr3_1:86751903-86751922 | None:intergenic | 70.0% |
| ! | GAGGAAAGTGGCGGTGGCGG+AGG | - | chr3_1:86751909-86751928 | None:intergenic | 70.0% |
| GCGGAGGAAAGTGGCGGTGG+CGG | - | chr3_1:86751912-86751931 | None:intergenic | 70.0% | |
| ! | GTGGCGGAGGAAAGTGGCGG+TGG | - | chr3_1:86751915-86751934 | None:intergenic | 70.0% |
| GACATCGCTAACGGCGGCGG+CGG | - | chr3_1:86751949-86751968 | None:intergenic | 70.0% | |
| CGGCTCCACCGTCTTCTCCG+AGG | + | chr3_1:86752115-86752134 | Msa0383740:CDS | 70.0% | |
| ATCGCTAACGGCGGCGGCGG+CGG | - | chr3_1:86751946-86751965 | None:intergenic | 75.0% | |
| !!! | GGCGGTGGTGGTGGTGGCGG+AGG | - | chr3_1:86751928-86751947 | None:intergenic | 80.0% |
| !!! | GGCGGCGGTGGTGGTGGTGG+CGG | - | chr3_1:86751931-86751950 | None:intergenic | 80.0% |
| !!! | GGCGGCGGCGGTGGTGGTGG+TGG | - | chr3_1:86751934-86751953 | None:intergenic | 85.0% |
| ! | AACGGCGGCGGCGGCGGTGG+TGG | - | chr3_1:86751940-86751959 | None:intergenic | 85.0% |
| ! | GCTAACGGCGGCGGCGGCGG+TGG | - | chr3_1:86751943-86751962 | None:intergenic | 85.0% |
| !! | GGCGGCGGCGGCGGTGGTGG+TGG | - | chr3_1:86751937-86751956 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86751721 | 86756121 | 86751721 | ID=Msa0383740;Name=Msa0383740 |
| chr3_1 | mRNA | 86751721 | 86756121 | 86751721 | ID=Msa0383740-mRNA-1;Parent=Msa0383740;Name=Msa0383740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=243|1|1|1|1|1|7|372|376 |
| chr3_1 | exon | 86751721 | 86752322 | 86751721 | ID=Msa0383740-mRNA-1:exon:22975;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86753222 | 86753260 | 86753222 | ID=Msa0383740-mRNA-1:exon:22976;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86753497 | 86753567 | 86753497 | ID=Msa0383740-mRNA-1:exon:22977;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86753664 | 86753728 | 86753664 | ID=Msa0383740-mRNA-1:exon:22978;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86753851 | 86753940 | 86753851 | ID=Msa0383740-mRNA-1:exon:22979;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86754031 | 86754123 | 86754031 | ID=Msa0383740-mRNA-1:exon:22980;Parent=Msa0383740-mRNA-1 |
| chr3_1 | exon | 86755336 | 86756121 | 86755336 | ID=Msa0383740-mRNA-1:exon:22981;Parent=Msa0383740-mRNA-1 |
| chr3_1 | five_prime_UTR | 86751721 | 86751963 | 86751721 | ID=Msa0383740-mRNA-1:five_prime_utr;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86751964 | 86752322 | 86751964 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86753222 | 86753260 | 86753222 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86753497 | 86753567 | 86753497 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86753664 | 86753728 | 86753664 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86753851 | 86753940 | 86753851 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86754031 | 86754123 | 86754031 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | CDS | 86755336 | 86755749 | 86755336 | ID=Msa0383740-mRNA-1:cds;Parent=Msa0383740-mRNA-1 |
| chr3_1 | three_prime_UTR | 86755750 | 86756121 | 86755750 | ID=Msa0383740-mRNA-1:three_prime_utr;Parent=Msa0383740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
