Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383700 | XP_024635444.2 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383700 | sp|Q9C942|CSE_ARATH | 33.333 | 288 | 180 | 7 | 95 | 372 | 39 | 324 | 2.27e-41 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383700 | A0A396IZC2 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0383700 | Msa0383740 | 0.965141 | 3.201105e-124 | -8.615850e-47 |
| Msa0383700 | Msa0882430 | 0.804906 | 1.724778e-49 | -8.615850e-47 |
| Msa0297950 | Msa0383700 | 0.844574 | 6.948280e-59 | -8.615850e-47 |
| Msa0335890 | Msa0383700 | 0.803516 | 3.358747e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383700 | MtrunA17_Chr3g0140391 | 99.202 | 376 | 3 | 0 | 1 | 376 | 1 | 376 | 0.0 | 768 |
| Msa0383700 | MtrunA17_Chr6g0479331 | 54.485 | 301 | 137 | 0 | 72 | 372 | 91 | 391 | 2.67e-115 | 340 |
| Msa0383700 | MtrunA17_Chr1g0209741 | 35.461 | 282 | 164 | 9 | 103 | 371 | 101 | 377 | 4.12e-46 | 162 |
| Msa0383700 | MtrunA17_Chr6g0460121 | 35.379 | 277 | 162 | 7 | 107 | 371 | 29 | 300 | 1.61e-44 | 155 |
| Msa0383700 | MtrunA17_Chr6g0457581 | 32.530 | 332 | 198 | 10 | 60 | 370 | 10 | 336 | 9.35e-44 | 154 |
| Msa0383700 | MtrunA17_Chr4g0047891 | 34.694 | 294 | 162 | 11 | 97 | 371 | 41 | 323 | 3.27e-40 | 145 |
| Msa0383700 | MtrunA17_Chr4g0071671 | 32.986 | 288 | 181 | 7 | 95 | 372 | 30 | 315 | 1.52e-39 | 143 |
| Msa0383700 | MtrunA17_Chr7g0215451 | 31.329 | 316 | 191 | 9 | 75 | 370 | 28 | 337 | 2.40e-34 | 129 |
| Msa0383700 | MtrunA17_Chr5g0423541 | 31.071 | 280 | 179 | 8 | 103 | 371 | 115 | 391 | 3.72e-34 | 130 |
| Msa0383700 | MtrunA17_Chr1g0195501 | 32.857 | 280 | 173 | 8 | 103 | 371 | 16 | 291 | 3.90e-34 | 128 |
| Msa0383700 | MtrunA17_Chr1g0212901 | 31.379 | 290 | 184 | 8 | 93 | 371 | 8 | 293 | 4.43e-33 | 125 |
| Msa0383700 | MtrunA17_Chr7g0269371 | 29.514 | 288 | 189 | 8 | 93 | 370 | 6 | 289 | 5.40e-33 | 125 |
| Msa0383700 | MtrunA17_Chr1g0199771 | 30.769 | 286 | 166 | 10 | 103 | 368 | 39 | 312 | 8.06e-30 | 117 |
| Msa0383700 | MtrunA17_Chr6g0484431 | 29.694 | 229 | 130 | 5 | 103 | 313 | 66 | 281 | 3.97e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383700 | AT5G11650.1 | 72.513 | 382 | 92 | 4 | 1 | 372 | 1 | 379 | 0.0 | 526 |
| Msa0383700 | AT5G11650.2 | 68.874 | 302 | 81 | 4 | 1 | 292 | 1 | 299 | 1.02e-132 | 382 |
| Msa0383700 | AT1G73480.1 | 56.386 | 321 | 134 | 2 | 52 | 372 | 149 | 463 | 6.44e-128 | 375 |
| Msa0383700 | AT1G18360.1 | 55.000 | 320 | 138 | 2 | 54 | 372 | 68 | 382 | 6.47e-125 | 365 |
| Msa0383700 | AT1G52760.1 | 33.333 | 288 | 180 | 7 | 95 | 372 | 39 | 324 | 2.30e-42 | 151 |
| Msa0383700 | AT2G39420.1 | 33.779 | 299 | 183 | 8 | 85 | 372 | 1 | 295 | 1.37e-41 | 149 |
| Msa0383700 | AT2G39410.2 | 34.138 | 290 | 176 | 8 | 93 | 371 | 9 | 294 | 8.31e-41 | 146 |
| Msa0383700 | AT1G11090.1 | 32.308 | 325 | 179 | 13 | 65 | 371 | 13 | 314 | 1.08e-40 | 146 |
| Msa0383700 | AT5G16120.2 | 30.347 | 346 | 215 | 10 | 47 | 370 | 15 | 356 | 1.03e-37 | 139 |
| Msa0383700 | AT5G16120.4 | 30.347 | 346 | 215 | 10 | 47 | 370 | 29 | 370 | 1.17e-37 | 140 |
| Msa0383700 | AT2G39400.1 | 34.767 | 279 | 169 | 6 | 103 | 371 | 13 | 288 | 2.58e-37 | 137 |
| Msa0383700 | AT5G16120.3 | 32.258 | 279 | 174 | 7 | 103 | 370 | 64 | 338 | 1.49e-36 | 136 |
| Msa0383700 | AT5G16120.1 | 32.258 | 279 | 174 | 7 | 103 | 370 | 64 | 338 | 1.49e-36 | 136 |
| Msa0383700 | AT1G77420.1 | 32.509 | 283 | 173 | 8 | 103 | 372 | 102 | 379 | 6.06e-34 | 129 |
| Msa0383700 | AT3G55190.1 | 32.013 | 303 | 188 | 10 | 85 | 374 | 1 | 298 | 1.28e-33 | 127 |
| Msa0383700 | AT3G55180.1 | 35.106 | 282 | 165 | 11 | 103 | 371 | 13 | 289 | 3.29e-33 | 126 |
| Msa0383700 | AT2G47630.1 | 32.042 | 284 | 176 | 9 | 102 | 371 | 13 | 293 | 1.25e-28 | 114 |
| Msa0383700 | AT3G62860.1 | 30.824 | 279 | 179 | 8 | 103 | 371 | 17 | 291 | 3.00e-28 | 113 |
| Msa0383700 | AT5G14980.1 | 27.143 | 280 | 181 | 7 | 107 | 371 | 44 | 315 | 3.80e-28 | 112 |
| Msa0383700 | AT2G47630.2 | 32.400 | 250 | 157 | 6 | 131 | 371 | 2 | 248 | 1.06e-26 | 108 |
| Msa0383700 | AT3G62860.2 | 32.218 | 239 | 150 | 6 | 142 | 371 | 13 | 248 | 2.63e-26 | 107 |
| Msa0383700 | AT2G47630.3 | 33.054 | 239 | 148 | 6 | 142 | 371 | 33 | 268 | 2.91e-26 | 107 |
| Msa0383700 | AT5G19290.1 | 28.276 | 290 | 174 | 11 | 103 | 371 | 40 | 316 | 1.89e-24 | 102 |
| Msa0383700 | AT2G39400.2 | 30.698 | 215 | 137 | 6 | 103 | 309 | 13 | 223 | 5.53e-19 | 85.9 |
Find 135 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTTATTATCAGGATTT+AGG | 0.126422 | 3_1:+86701781 | None:intergenic |
| CGCTCTTGGTTCCCGGTTTA+CGG | 0.245680 | 3_1:-86705506 | Msa0383700:CDS |
| GTGGTGGTGGCGGAGGAAAG+TGG | 0.256173 | 3_1:+86705879 | None:intergenic |
| GGCGGCGGCGGCGGTGGTGG+TGG | 0.258398 | 3_1:+86705863 | None:intergenic |
| ATATTAACAGGGAGCTTTCT+TGG | 0.258404 | 3_1:-86703956 | Msa0383700:intron |
| GGGATACCATGCTTTCTCTT+TGG | 0.279950 | 3_1:-86703910 | Msa0383700:CDS |
| ATATTGTGGGATTTATTATC+AGG | 0.282886 | 3_1:+86701774 | None:intergenic |
| AAAGAGGCATTCCAGTTTCT+AGG | 0.295461 | 3_1:-86702403 | Msa0383700:CDS |
| TTCACAAGATTTATACAATA+AGG | 0.302609 | 3_1:-86702201 | Msa0383700:CDS |
| TCGTTCTCCCTCGTCGGAAT+AGG | 0.303249 | 3_1:-86705706 | Msa0383700:CDS |
| GGATTTATTATCAGGATTTA+GGG | 0.306373 | 3_1:+86701782 | None:intergenic |
| TGAAGAGACGATGGTTGGTT+AGG | 0.332127 | 3_1:-86705652 | Msa0383700:CDS |
| TGCTTCCGCCACCCACTCTT+CGG | 0.336874 | 3_1:+86701940 | None:intergenic |
| ATGATATTCGCAGTATTTCA+TGG | 0.338631 | 3_1:+86702309 | None:intergenic |
| GGTGGTGGCGGAGGAAAGTG+GGG | 0.338919 | 3_1:+86705881 | None:intergenic |
| ATCGCTAACGGCGGCGGCGG+CGG | 0.345533 | 3_1:+86705854 | None:intergenic |
| TGGTGGTGGCGGAGGAAAGT+GGG | 0.347858 | 3_1:+86705880 | None:intergenic |
| GGGAAGAAGAGGATACGTTT+AGG | 0.352429 | 3_1:-86705631 | Msa0383700:CDS |
| GGCGGTGGTGGTGGTGGCGG+AGG | 0.365118 | 3_1:+86705872 | None:intergenic |
| GCAAAACTTACGCCAACTAT+TGG | 0.365315 | 3_1:+86703685 | None:intergenic |
| GAGAAATTTGTACATTCAAC+TGG | 0.367033 | 3_1:-86701830 | Msa0383700:three_prime_UTR |
| GGCGGCGGCGGTGGTGGTGG+TGG | 0.368594 | 3_1:+86705866 | None:intergenic |
| TTTCTCTTTGGTCACTCAAC+TGG | 0.369424 | 3_1:-86703898 | Msa0383700:CDS |
| CTTTGAGAAGAGGAATTATA+CGG | 0.370807 | 3_1:+86705783 | None:intergenic |
| GCATTTGAAAATGTCAATAA+TGG | 0.372165 | 3_1:-86702055 | Msa0383700:exon |
| GGCGGCGGTGGTGGTGGTGG+CGG | 0.389680 | 3_1:+86705869 | None:intergenic |
| TGGCCAGTTCGAACTCTAAT+AGG | 0.393321 | 3_1:+86702329 | None:intergenic |
| GCTGCTGGATCCCTAGAAAC+TGG | 0.395115 | 3_1:+86702392 | None:intergenic |
| TAAATTATATATTGTGTGTA+GGG | 0.395581 | 3_1:-86701866 | Msa0383700:three_prime_UTR |
| GCTCCTTTGAACTGGAACCT+TGG | 0.396791 | 3_1:+86702431 | None:intergenic |
| CTCTTTGGTCACTCAACTGG+AGG | 0.400550 | 3_1:-86703895 | Msa0383700:CDS |
| TAGGGATCCAGCAGCTTTGT+TGG | 0.405367 | 3_1:-86702384 | Msa0383700:CDS |
| CACATTGAAGTGATGGTAGA+AGG | 0.405601 | 3_1:-86703751 | Msa0383700:CDS |
| AAGAGGAATTATACGGTTGC+TGG | 0.413860 | 3_1:+86705790 | None:intergenic |
| TACTTAAGATCACCGTAAAC+CGG | 0.431025 | 3_1:+86705494 | None:intergenic |
| GACATCGCTAACGGCGGCGG+CGG | 0.440925 | 3_1:+86705851 | None:intergenic |
| GAAGAGACGATGGTTGGTTA+GGG | 0.443367 | 3_1:-86705651 | Msa0383700:CDS |
| GCTTCCGCCACCCACTCTTC+GGG | 0.444216 | 3_1:+86701941 | None:intergenic |
| TCACTCAACTGGAGGGGCTG+TGG | 0.448260 | 3_1:-86703887 | Msa0383700:CDS |
| GGCAAAGTACTCTGATCCTC+TGG | 0.452619 | 3_1:-86702363 | Msa0383700:CDS |
| ACCGTTAGATCATCAATAAA+CGG | 0.453579 | 3_1:-86706050 | Msa0383700:five_prime_UTR |
| TCTTGTTCGTTCTCCCTCGT+CGG | 0.453724 | 3_1:-86705712 | Msa0383700:CDS |
| TTCTACACACTTGCCAACTT+TGG | 0.457166 | 3_1:+86701975 | None:intergenic |
| GGAGCTACCAGAGAAAATAT+TGG | 0.459523 | 3_1:+86702452 | None:intergenic |
| TTGCTGGCTCCCGACGTTAG+TGG | 0.459715 | 3_1:+86705806 | None:intergenic |
| AACTTTCTAACTACCAAAGT+TGG | 0.459746 | 3_1:-86701988 | Msa0383700:three_prime_UTR |
| AAGATTAGATCAGAGAATCC+TGG | 0.460328 | 3_1:-86703931 | Msa0383700:CDS |
| TACTTTGCCAACAAAGCTGC+TGG | 0.462234 | 3_1:+86702377 | None:intergenic |
| AAAGACATAAAGCTTTATGA+TGG | 0.463555 | 3_1:-86702164 | Msa0383700:CDS |
| CAGTTAACATTGTGCAACTT+TGG | 0.464279 | 3_1:-86704275 | Msa0383700:CDS |
| TTAAATTATATATTGTGTGT+AGG | 0.465601 | 3_1:-86701867 | Msa0383700:three_prime_UTR |
| CACGCTCCGGCTCAAACAAA+AGG | 0.473659 | 3_1:+86702129 | None:intergenic |
| TGTTCCTTCTCTTGATCAAG+TGG | 0.475105 | 3_1:-86704102 | Msa0383700:CDS |
| GTCATGATGATGGTTGTTGC+CGG | 0.479005 | 3_1:-86705577 | Msa0383700:CDS |
| AACTTTGGTAGTTAGAAAGT+TGG | 0.486077 | 3_1:+86701990 | None:intergenic |
| TGAATGTACAAATTTCTCAA+TGG | 0.495891 | 3_1:+86701835 | None:intergenic |
| AGAGCGTTGGCGCAGGATGT+TGG | 0.496334 | 3_1:-86705605 | Msa0383700:CDS |
| TCTTTGGTCACTCAACTGGA+GGG | 0.497603 | 3_1:-86703894 | Msa0383700:CDS |
| TAGCTCAGGACATTATCAAC+TGG | 0.499576 | 3_1:-86702100 | Msa0383700:CDS |
| CGTCTCTTCAAATTCTTCCT+CGG | 0.504971 | 3_1:+86705665 | None:intergenic |
| CCCGACGTTAGTGGCTCCAT+CGG | 0.505881 | 3_1:+86705815 | None:intergenic |
| GTTGGCGCAGGATGTTGGAA+TGG | 0.506491 | 3_1:-86705600 | Msa0383700:CDS |
| GTGGTGGCGGAGGAAAGTGG+GGG | 0.507159 | 3_1:+86705882 | None:intergenic |
| GAAGACATCGCTAACGGCGG+CGG | 0.512381 | 3_1:+86705848 | None:intergenic |
| AAGAGAAAGCATGGTATCCC+AGG | 0.512430 | 3_1:+86703913 | None:intergenic |
| CTTTATCAGCAGTTCCATGC+AGG | 0.512579 | 3_1:+86702240 | None:intergenic |
| AAGCCATCTCATCCAATAGT+TGG | 0.515260 | 3_1:-86703697 | Msa0383700:CDS |
| TCCGTTTATTGATGATCTAA+CGG | 0.517013 | 3_1:+86706049 | None:intergenic |
| TTGGCGCAGGATGTTGGAAT+GGG | 0.518076 | 3_1:-86705599 | Msa0383700:CDS |
| CTTTGGTCACTCAACTGGAG+GGG | 0.520149 | 3_1:-86703893 | Msa0383700:CDS |
| GATGGCTTCACACGCAAAGC+TGG | 0.522765 | 3_1:+86703712 | None:intergenic |
| TGGCTCCATCGGCGCATCGA+TGG | 0.526428 | 3_1:+86705826 | None:intergenic |
| TTGGTGTTTATGCAATGGAC+TGG | 0.528169 | 3_1:-86704256 | Msa0383700:CDS |
| TACGTTTAGGAGAAGAGCGT+TGG | 0.532582 | 3_1:-86705618 | Msa0383700:CDS |
| TTGAAAATGTCAATAATGGA+AGG | 0.532716 | 3_1:-86702051 | Msa0383700:exon |
| ACATGCTACACGATATATTG+TGG | 0.532825 | 3_1:+86701760 | None:intergenic |
| AAGAGGCATTCCAGTTTCTA+GGG | 0.532997 | 3_1:-86702402 | Msa0383700:CDS |
| CCGATGGAGCCACTAACGTC+GGG | 0.533408 | 3_1:-86705815 | Msa0383700:CDS |
| CATGCTACACGATATATTGT+GGG | 0.539080 | 3_1:+86701761 | None:intergenic |
| GTACCATTCTTTGTCCTGCA+TGG | 0.539898 | 3_1:-86702254 | Msa0383700:CDS |
| GGAGCGTGAAGAGATAGCTC+AGG | 0.541686 | 3_1:-86702114 | Msa0383700:CDS |
| AGATTAGATCAGAGAATCCT+GGG | 0.542254 | 3_1:-86703930 | Msa0383700:CDS |
| GGTATTATGATCATCATTCA+CGG | 0.546448 | 3_1:-86704574 | Msa0383700:CDS |
| GTTGGAATGGGTCATGATGA+TGG | 0.547013 | 3_1:-86705587 | Msa0383700:CDS |
| GAATTTGAAGAGACGATGGT+TGG | 0.549605 | 3_1:-86705657 | Msa0383700:CDS |
| TGAGCTATCTCTTCACGCTC+CGG | 0.549656 | 3_1:+86702116 | None:intergenic |
| GTTCCATGCAGGACAAAGAA+TGG | 0.551493 | 3_1:+86702251 | None:intergenic |
| TGATAAAGTAACTGATCCAT+TGG | 0.551814 | 3_1:-86702225 | Msa0383700:CDS |
| TTCAAAGGAGCAAACAAAAG+AGG | 0.552589 | 3_1:-86702419 | Msa0383700:CDS |
| GGACCTATTAGAGTTCGAAC+TGG | 0.553822 | 3_1:-86702332 | Msa0383700:CDS |
| ATGGTTGGTTAGGGAAGAAG+AGG | 0.554707 | 3_1:-86705642 | Msa0383700:CDS |
| AAATTCTTCCTCGGAGAAGA+CGG | 0.555599 | 3_1:+86705674 | None:intergenic |
| ATGCCCTCACATTGAAGTGA+TGG | 0.556636 | 3_1:-86703758 | Msa0383700:CDS |
| GCTCTGAACGCTTTGAGAAG+AGG | 0.558966 | 3_1:+86705773 | None:intergenic |
| TATAAATCTTGTGAAGCCAA+TGG | 0.559126 | 3_1:+86702209 | None:intergenic |
| GTATTATGATCATCATTCAC+GGG | 0.559473 | 3_1:-86704573 | Msa0383700:CDS |
| GCTCCAAGGTTCCAGTTCAA+AGG | 0.560061 | 3_1:-86702434 | Msa0383700:CDS |
| ATAAATATAAACACAACTGT+AGG | 0.561054 | 3_1:-86706004 | Msa0383700:five_prime_UTR |
| GGAGGTAGCGATGGATTACA+TGG | 0.561526 | 3_1:-86704128 | Msa0383700:CDS |
| CAACTTTGGTGTTTATGCAA+TGG | 0.564129 | 3_1:-86704261 | Msa0383700:CDS |
| GTCTTCCATCGATGCGCCGA+TGG | 0.566115 | 3_1:-86705831 | Msa0383700:CDS |
| TAGGAGAAGAGCGTTGGCGC+AGG | 0.566223 | 3_1:-86705612 | Msa0383700:CDS |
| ACGCCAACTATTGGATGAGA+TGG | 0.572335 | 3_1:+86703694 | None:intergenic |
| ACAGGTCATGGAGGTAGCGA+TGG | 0.580290 | 3_1:-86704137 | Msa0383700:intron |
| GAAGATATGCAGATTTCGCT+AGG | 0.582302 | 3_1:-86704298 | Msa0383700:CDS |
| AGTGAAGTCGTCCCGAAGAG+TGG | 0.585471 | 3_1:-86701952 | Msa0383700:three_prime_UTR |
| GAGTGACCAAAGAGAAAGCA+TGG | 0.586609 | 3_1:+86703904 | None:intergenic |
| ACTTAAGATCACCGTAAACC+GGG | 0.587787 | 3_1:+86705495 | None:intergenic |
| ATGATGATGGTTGTTGCCGG+TGG | 0.596726 | 3_1:-86705574 | Msa0383700:CDS |
| GTGAAGTCGTCCCGAAGAGT+GGG | 0.597513 | 3_1:-86701951 | Msa0383700:three_prime_UTR |
| ATTATCAGGATTTAGGGCCA+CGG | 0.603366 | 3_1:+86701788 | None:intergenic |
| GAACGAACAAGAGAAAAGAG+AGG | 0.604398 | 3_1:+86705723 | None:intergenic |
| AAGTCGTCCCGAAGAGTGGG+TGG | 0.614570 | 3_1:-86701948 | Msa0383700:three_prime_UTR |
| CTACCATCACTTCAATGTGA+GGG | 0.619815 | 3_1:+86703755 | None:intergenic |
| AGTGGGTGGCGGAAGCACAT+AGG | 0.623659 | 3_1:-86701934 | Msa0383700:three_prime_UTR |
| TCAGGACATTATCAACTGGA+TGG | 0.624877 | 3_1:-86702096 | Msa0383700:CDS |
| AGAAAATCGAAGTATTCCAC+CGG | 0.625417 | 3_1:+86705558 | None:intergenic |
| GGAAGAATTTGAAGAGACGA+TGG | 0.637158 | 3_1:-86705661 | Msa0383700:CDS |
| TCTACCATCACTTCAATGTG+AGG | 0.638241 | 3_1:+86703754 | None:intergenic |
| GTTTATGCAATGGACTGGAT+AGG | 0.638758 | 3_1:-86704251 | Msa0383700:intron |
| TGTGTAGACGAAGATGAGAG+AGG | 0.642743 | 3_1:+86705751 | None:intergenic |
| TCGTCCCGAAGAGTGGGTGG+CGG | 0.643186 | 3_1:-86701945 | Msa0383700:three_prime_UTR |
| TCGATGGAAGACATCGCTAA+CGG | 0.645152 | 3_1:+86705842 | None:intergenic |
| GCAACCACTTGATCAAGAGA+AGG | 0.648753 | 3_1:+86704098 | None:intergenic |
| TCTCCCTCGTCGGAATAGGA+CGG | 0.656821 | 3_1:-86705702 | Msa0383700:CDS |
| ATAGGTCCTGTGTAGACCAG+AGG | 0.665370 | 3_1:+86702347 | None:intergenic |
| TCTGATCCTCTGGTCTACAC+AGG | 0.667077 | 3_1:-86702353 | Msa0383700:CDS |
| GCCGATGGAGCCACTAACGT+CGG | 0.668941 | 3_1:-86705816 | Msa0383700:CDS |
| GAGCCGTCCTATTCCGACGA+GGG | 0.669047 | 3_1:+86705699 | None:intergenic |
| TTCACGGGCTTAATGAACAC+AGG | 0.671284 | 3_1:-86704558 | Msa0383700:intron |
| TTCTTCCTCGGAGAAGACGG+TGG | 0.672952 | 3_1:+86705677 | None:intergenic |
| CGGCTCCACCGTCTTCTCCG+AGG | 0.676398 | 3_1:-86705682 | Msa0383700:CDS |
| ATGGAAGACATCGCTAACGG+CGG | 0.697848 | 3_1:+86705845 | None:intergenic |
| TTTATTGCTACAGGTCATGG+AGG | 0.706795 | 3_1:-86704146 | Msa0383700:intron |
| GGAGCCGTCCTATTCCGACG+AGG | 0.713676 | 3_1:+86705698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAATTTAATTCTTAA+AGG | - | chr3_1:86702774-86702793 | Msa0383700:intron | 10.0% |
| !! | TTTATGTTTATGATAAAAAT+GGG | - | chr3_1:86702910-86702929 | Msa0383700:intron | 10.0% |
| !! | ATATTTATTTATATGTATTG+GGG | + | chr3_1:86703373-86703392 | None:intergenic | 10.0% |
| !! | ATATAAATAAATATTTCCTA+TGG | - | chr3_1:86703379-86703398 | Msa0383700:intron | 10.0% |
| !! | AACGTATAACAAAATTATAT+TGG | - | chr3_1:86702686-86702705 | Msa0383700:intron | 15.0% |
| !! | GTTTATGTTTATGATAAAAA+TGG | - | chr3_1:86702909-86702928 | Msa0383700:intron | 15.0% |
| !! | TTATGTTTATGATAAAAATG+GGG | - | chr3_1:86702911-86702930 | Msa0383700:intron | 15.0% |
| !!! | CTGAAAAAAAATCATATTTT+GGG | + | chr3_1:86703327-86703346 | None:intergenic | 15.0% |
| !! | CAAAAACATTAAATAGTATT+TGG | + | chr3_1:86703765-86703784 | None:intergenic | 15.0% |
| !! | TTCATAAATTTAATAACAGA+AGG | + | chr3_1:86703939-86703958 | None:intergenic | 15.0% |
| !! | TAAATTTATGAAATCTTTGT+TGG | - | chr3_1:86703947-86703966 | Msa0383700:CDS | 15.0% |
| !!! | TAATTTCTACATTTTTATGT+AGG | - | chr3_1:86703981-86704000 | Msa0383700:intron | 15.0% |
| !! | TCTTATAAATCACTATATAA+AGG | - | chr3_1:86704579-86704598 | Msa0383700:intron | 15.0% |
| !! | TTAAATTATATATTGTGTGT+AGG | - | chr3_1:86705902-86705921 | Msa0383700:five_prime_UTR | 15.0% |
| !! | TAAATTATATATTGTGTGTA+GGG | - | chr3_1:86705903-86705922 | Msa0383700:five_prime_UTR | 15.0% |
| !!! | TATTTTTTTAAGAACTACAT+TGG | - | chr3_1:86706059-86706078 | Msa0383700:five_prime_UTR | 15.0% |
| !! | ATAAATATAAACACAACTGT+AGG | - | chr3_1:86701765-86701784 | Msa0383700:three_prime_UTR | 20.0% |
| !!! | CTTGATAATTATGTATGTTA+AGG | - | chr3_1:86702375-86702394 | Msa0383700:CDS | 20.0% |
| !! | AGTATATTGATATGCTATAT+TGG | - | chr3_1:86702642-86702661 | Msa0383700:intron | 20.0% |
| !! | ATATACTTCAAAACCAAATT+GGG | + | chr3_1:86702811-86702830 | None:intergenic | 20.0% |
| !! | TATATACTTCAAAACCAAAT+TGG | + | chr3_1:86702812-86702831 | None:intergenic | 20.0% |
| !!! | TTTTGGGAAAATATAAGTAA+AGG | + | chr3_1:86703311-86703330 | None:intergenic | 20.0% |
| !!! | GCTGAAAAAAAATCATATTT+TGG | + | chr3_1:86703328-86703347 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCAGCTTTTGTT+GGG | - | chr3_1:86703335-86703354 | Msa0383700:intron | 20.0% |
| !! | TTATAAGAATCAGAATGATA+GGG | + | chr3_1:86704567-86704586 | None:intergenic | 20.0% |
| !! | TTTATAAGAATCAGAATGAT+AGG | + | chr3_1:86704568-86704587 | None:intergenic | 20.0% |
| !! | ATTATGAATCTGTTAGATAT+AGG | + | chr3_1:86704817-86704836 | None:intergenic | 20.0% |
| !! | ATATCTAACAGATTCATAAT+AGG | - | chr3_1:86704817-86704836 | Msa0383700:intron | 20.0% |
| !! | TTCACAAGATTTATACAATA+AGG | - | chr3_1:86705568-86705587 | Msa0383700:CDS | 20.0% |
| !!! | TTTCAAATTTTTCGATTGAT+TGG | - | chr3_1:86706031-86706050 | Msa0383700:five_prime_UTR | 20.0% |
| ! | CTTTGCATATTGAAATTTGA+AGG | - | chr3_1:86702349-86702368 | Msa0383700:CDS | 25.0% |
| !!! | GTTTTGGTTTAGATTTTTGA+TGG | - | chr3_1:86702448-86702467 | Msa0383700:CDS | 25.0% |
| ! | GAACTTCAATTTCACAAATT+TGG | + | chr3_1:86702483-86702502 | None:intergenic | 25.0% |
| ! | TTGTGAAATTGAAGTTCAAT+TGG | - | chr3_1:86702486-86702505 | Msa0383700:intron | 25.0% |
| ! | TTGAAATTGTGAGATTTCTA+AGG | - | chr3_1:86702539-86702558 | Msa0383700:intron | 25.0% |
| ! | TCTAAGGAAAATTTAGAAAC+TGG | - | chr3_1:86702555-86702574 | Msa0383700:intron | 25.0% |
| ! | CTAAGGAAAATTTAGAAACT+GGG | - | chr3_1:86702556-86702575 | Msa0383700:intron | 25.0% |
| !!! | GTCTTTTTGTTTGAAGAAAA+TGG | - | chr3_1:86702734-86702753 | Msa0383700:intron | 25.0% |
| !!! | ATTGATTTTTTAGAACTGCA+GGG | + | chr3_1:86702763-86702782 | None:intergenic | 25.0% |
| !!! | AATTGATTTTTTAGAACTGC+AGG | + | chr3_1:86702764-86702783 | None:intergenic | 25.0% |
| ! | TATACTTCAAAACCAAATTG+GGG | + | chr3_1:86702810-86702829 | None:intergenic | 25.0% |
| !!! | AAAAAGAGAGATTTTAATCG+AGG | + | chr3_1:86703005-86703024 | None:intergenic | 25.0% |
| !! | ATTTTCACTTATGTTCTTTC+AGG | - | chr3_1:86703172-86703191 | Msa0383700:intron | 25.0% |
| !! | TTTTCACTTATGTTCTTTCA+GGG | - | chr3_1:86703173-86703192 | Msa0383700:intron | 25.0% |
| !!! | GATTTTTTTTCAGCTTTTGT+TGG | - | chr3_1:86703334-86703353 | Msa0383700:intron | 25.0% |
| !!! | TTTTTTTTCAGCTTTTGTTG+GGG | - | chr3_1:86703336-86703355 | Msa0383700:intron | 25.0% |
| ! | AGATGATGATATGAAGTATA+AGG | + | chr3_1:86703577-86703596 | None:intergenic | 25.0% |
| !!! | TTATTTCGTTTTATTGCTAC+AGG | - | chr3_1:86703614-86703633 | Msa0383700:intron | 25.0% |
| ! | TGATCGTGATAATATTAACA+GGG | - | chr3_1:86703802-86703821 | Msa0383700:intron | 25.0% |
| !! | TTTCTACATTTTTATGTAGG+CGG | - | chr3_1:86703984-86704003 | Msa0383700:intron | 25.0% |
| ! | TCGATAAATTCAAATGAATC+AGG | + | chr3_1:86704335-86704354 | None:intergenic | 25.0% |
| ! | TACTATGTAAAATAACAGCT+AGG | + | chr3_1:86704380-86704399 | None:intergenic | 25.0% |
| ! | TATAAGAATCAGAATGATAG+GGG | + | chr3_1:86704566-86704585 | None:intergenic | 25.0% |
| ! | TACAAAGTTGACAAAAAAAG+CGG | + | chr3_1:86704617-86704636 | None:intergenic | 25.0% |
| ! | AAATGAACAAAAAAAGTGGT+TGG | + | chr3_1:86704643-86704662 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTTTGTTCATT+TGG | - | chr3_1:86704642-86704661 | Msa0383700:intron | 25.0% |
| ! | AACCAAATGAACAAAAAAAG+TGG | + | chr3_1:86704647-86704666 | None:intergenic | 25.0% |
| ! | TAGATGATATATGAGCTTAT+AGG | - | chr3_1:86704700-86704719 | Msa0383700:intron | 25.0% |
| ! | ATCAGGATTCAATTATGAAT+CGG | + | chr3_1:86704872-86704891 | None:intergenic | 25.0% |
| ! | TAAATAAGCCTAGGAAATAA+AGG | + | chr3_1:86705018-86705037 | None:intergenic | 25.0% |
| !! | AAGACATTTTAAATAAGCCT+AGG | + | chr3_1:86705027-86705046 | None:intergenic | 25.0% |
| ! | AAACATGATCAATGCTTAAA+TGG | + | chr3_1:86705114-86705133 | None:intergenic | 25.0% |
| !! | ATCATGTTTTCTTTGATGAA+GGG | - | chr3_1:86705125-86705144 | Msa0383700:intron | 25.0% |
| ! | CAGAAAATCTTAAGATTATG+TGG | - | chr3_1:86705178-86705197 | Msa0383700:intron | 25.0% |
| ! | CTGAATCATGTTTATTGTAA+TGG | - | chr3_1:86705206-86705225 | Msa0383700:intron | 25.0% |
| ! | TTCATGCGTTAAAACTTAAA+AGG | - | chr3_1:86705264-86705283 | Msa0383700:intron | 25.0% |
| !! | AAAGACATAAAGCTTTATGA+TGG | - | chr3_1:86705605-86705624 | Msa0383700:CDS | 25.0% |
| ! | GCATTTGAAAATGTCAATAA+TGG | - | chr3_1:86705714-86705733 | Msa0383700:CDS | 25.0% |
| !! | TTGAAAATGTCAATAATGGA+AGG | - | chr3_1:86705718-86705737 | Msa0383700:CDS | 25.0% |
| ! | TGAATGTACAAATTTCTCAA+TGG | + | chr3_1:86705937-86705956 | None:intergenic | 25.0% |
| ! | GGATTTATTATCAGGATTTA+GGG | + | chr3_1:86705990-86706009 | None:intergenic | 25.0% |
| ! | ATATTGTGGGATTTATTATC+AGG | + | chr3_1:86705998-86706017 | None:intergenic | 25.0% |
| ACCGTTAGATCATCAATAAA+CGG | - | chr3_1:86701719-86701738 | Msa0383700:three_prime_UTR | 30.0% | |
| ! | TCCGTTTATTGATGATCTAA+CGG | + | chr3_1:86701723-86701742 | None:intergenic | 30.0% |
| ! | CTTTGAGAAGAGGAATTATA+CGG | + | chr3_1:86701989-86702008 | None:intergenic | 30.0% |
| ! | TGGAATACTTCGATTTTCTA+TGG | - | chr3_1:86702215-86702234 | Msa0383700:CDS | 30.0% |
| ACGTGATGATAGAAAATTGA+AGG | - | chr3_1:86702514-86702533 | Msa0383700:intron | 30.0% | |
| CGTGATGATAGAAAATTGAA+GGG | - | chr3_1:86702515-86702534 | Msa0383700:intron | 30.0% | |
| !!! | TTGATTTTTTAGAACTGCAG+GGG | + | chr3_1:86702762-86702781 | None:intergenic | 30.0% |
| ! | TATTCATCATGTTAGTCTCT+AGG | - | chr3_1:86702865-86702884 | Msa0383700:intron | 30.0% |
| !! | ATAAAAATGGGGTACTGTAT+TGG | - | chr3_1:86702922-86702941 | Msa0383700:intron | 30.0% |
| !! | GAGATTTTAATCGAGGATTT+GGG | + | chr3_1:86702998-86703017 | None:intergenic | 30.0% |
| !! | AGAGATTTTAATCGAGGATT+TGG | + | chr3_1:86702999-86703018 | None:intergenic | 30.0% |
| ACCCAAACAAAATAACGAAA+GGG | + | chr3_1:86703104-86703123 | None:intergenic | 30.0% | |
| AACCCAAACAAAATAACGAA+AGG | + | chr3_1:86703105-86703124 | None:intergenic | 30.0% | |
| TTTCACTTATGTTCTTTCAG+GGG | - | chr3_1:86703174-86703193 | Msa0383700:intron | 30.0% | |
| GGTATTATGATCATCATTCA+CGG | - | chr3_1:86703195-86703214 | Msa0383700:intron | 30.0% | |
| GTATTATGATCATCATTCAC+GGG | - | chr3_1:86703196-86703215 | Msa0383700:intron | 30.0% | |
| ACAACAAGTAACAACAATTG+AGG | + | chr3_1:86703274-86703293 | None:intergenic | 30.0% | |
| ! | TCAATTGTTGTTACTTGTTG+TGG | - | chr3_1:86703273-86703292 | Msa0383700:intron | 30.0% |
| !! | CAATTGTTGTTACTTGTTGT+GGG | - | chr3_1:86703274-86703293 | Msa0383700:intron | 30.0% |
| !!! | TTTTTTTCAGCTTTTGTTGG+GGG | - | chr3_1:86703337-86703356 | Msa0383700:intron | 30.0% |
| CTTATCTTAGAAACAACCAT+AGG | + | chr3_1:86703398-86703417 | None:intergenic | 30.0% | |
| AAAACGAAATAACTTCAGAC+CGG | + | chr3_1:86703606-86703625 | None:intergenic | 30.0% | |
| CTGATCGTGATAATATTAAC+AGG | - | chr3_1:86703801-86703820 | Msa0383700:intron | 30.0% | |
| GACATTAACAGTTGAAAAGA+AGG | + | chr3_1:86704249-86704268 | None:intergenic | 30.0% | |
| TCTCTAGTGTGTATCTTTAT+TGG | - | chr3_1:86704521-86704540 | Msa0383700:intron | 30.0% | |
| ! | TGTTCATTTGGTTTATGACT+TGG | - | chr3_1:86704654-86704673 | Msa0383700:intron | 30.0% |
| TTCATAATAGGATTCGATTC+AGG | - | chr3_1:86704829-86704848 | Msa0383700:intron | 30.0% | |
| TATGAGCCTAAATATGAGAA+GGG | + | chr3_1:86705083-86705102 | None:intergenic | 30.0% | |
| TCAATGCTTAAATGGAAAGA+AGG | + | chr3_1:86705106-86705125 | None:intergenic | 30.0% | |
| ! | GATCATGTTTTCTTTGATGA+AGG | - | chr3_1:86705124-86705143 | Msa0383700:intron | 30.0% |
| AAAGCACAAAGTACATTCAA+AGG | + | chr3_1:86705237-86705256 | None:intergenic | 30.0% | |
| ATGATATTCGCAGTATTTCA+TGG | + | chr3_1:86705463-86705482 | None:intergenic | 30.0% | |
| TGATAAAGTAACTGATCCAT+TGG | - | chr3_1:86705544-86705563 | Msa0383700:CDS | 30.0% | |
| TATAAATCTTGTGAAGCCAA+TGG | + | chr3_1:86705563-86705582 | None:intergenic | 30.0% | |
| ! | AACTTTGGTAGTTAGAAAGT+TGG | + | chr3_1:86705782-86705801 | None:intergenic | 30.0% |
| AACTTTCTAACTACCAAAGT+TGG | - | chr3_1:86705781-86705800 | Msa0383700:CDS | 30.0% | |
| GAGAAATTTGTACATTCAAC+TGG | - | chr3_1:86705939-86705958 | Msa0383700:five_prime_UTR | 30.0% | |
| ! | TAAATTTCAGTGATTTTCCG+TGG | - | chr3_1:86705964-86705983 | Msa0383700:five_prime_UTR | 30.0% |
| GGGATTTATTATCAGGATTT+AGG | + | chr3_1:86705991-86706010 | None:intergenic | 30.0% | |
| ! | AGAAAATCGAAGTATTCCAC+CGG | + | chr3_1:86702214-86702233 | None:intergenic | 35.0% |
| TACTTAAGATCACCGTAAAC+CGG | + | chr3_1:86702278-86702297 | None:intergenic | 35.0% | |
| GTTTACGGTGATCTTAAGTA+AGG | - | chr3_1:86702278-86702297 | Msa0383700:CDS | 35.0% | |
| AAGCTTCATAGTGTGAAAAG+AGG | - | chr3_1:86702425-86702444 | Msa0383700:CDS | 35.0% | |
| AGCTTCATAGTGTGAAAAGA+GGG | - | chr3_1:86702426-86702445 | Msa0383700:CDS | 35.0% | |
| ! | ATAGTGTGAAAAGAGGGTTT+TGG | - | chr3_1:86702432-86702451 | Msa0383700:CDS | 35.0% |
| AACTGGGTAGATCGAATTAT+TGG | - | chr3_1:86702572-86702591 | Msa0383700:intron | 35.0% | |
| CATAAAACAACTGCATGTGA+AGG | + | chr3_1:86702715-86702734 | None:intergenic | 35.0% | |
| !! | AGCCCTTTCGTTATTTTGTT+TGG | - | chr3_1:86703099-86703118 | Msa0383700:intron | 35.0% |
| !! | GCCCTTTCGTTATTTTGTTT+GGG | - | chr3_1:86703100-86703119 | Msa0383700:intron | 35.0% |
| TTCTATTCCATACAGTTGTG+CGG | - | chr3_1:86703123-86703142 | Msa0383700:intron | 35.0% | |
| !! | ATGAGTTCTGAGTCAGAATT+GGG | + | chr3_1:86703442-86703461 | None:intergenic | 35.0% |
| !! | AATGAGTTCTGAGTCAGAAT+TGG | + | chr3_1:86703443-86703462 | None:intergenic | 35.0% |
| !! | ACTCAGAACTCATTTTTCAG+CGG | - | chr3_1:86703449-86703468 | Msa0383700:intron | 35.0% |
| CAGTTAACATTGTGCAACTT+TGG | - | chr3_1:86703494-86703513 | Msa0383700:intron | 35.0% | |
| !! | CAACTTTGGTGTTTATGCAA+TGG | - | chr3_1:86703508-86703527 | Msa0383700:intron | 35.0% |
| CATATCATCATCTTTGTGTC+CGG | - | chr3_1:86703584-86703603 | Msa0383700:intron | 35.0% | |
| ATATTAACAGGGAGCTTTCT+TGG | - | chr3_1:86703813-86703832 | Msa0383700:intron | 35.0% | |
| AAGATTAGATCAGAGAATCC+TGG | - | chr3_1:86703838-86703857 | Msa0383700:intron | 35.0% | |
| AGATTAGATCAGAGAATCCT+GGG | - | chr3_1:86703839-86703858 | Msa0383700:intron | 35.0% | |
| TAACAGTTGAAAAGAAGGCA+GGG | + | chr3_1:86704244-86704263 | None:intergenic | 35.0% | |
| TTAACAGTTGAAAAGAAGGC+AGG | + | chr3_1:86704245-86704264 | None:intergenic | 35.0% | |
| TGTGTCGTAGTATCTTGATT+TGG | - | chr3_1:86704471-86704490 | Msa0383700:intron | 35.0% | |
| AAGTTGACAAAAAAAGCGGT+TGG | + | chr3_1:86704613-86704632 | None:intergenic | 35.0% | |
| TGTTAGTTACTTATGCCCTT+AGG | - | chr3_1:86704788-86704807 | Msa0383700:intron | 35.0% | |
| GTTAGATATAGGACTCCTAA+GGG | + | chr3_1:86704806-86704825 | None:intergenic | 35.0% | |
| TGTTAGATATAGGACTCCTA+AGG | + | chr3_1:86704807-86704826 | None:intergenic | 35.0% | |
| !! | AATAAGAGCACTAGATGCAA+GGG | + | chr3_1:86704961-86704980 | None:intergenic | 35.0% |
| !! | AAATAAGAGCACTAGATGCA+AGG | + | chr3_1:86704962-86704981 | None:intergenic | 35.0% |
| !! | TGCTCTTATTTCTGATCTGT+TGG | - | chr3_1:86704971-86704990 | Msa0383700:intron | 35.0% |
| GTATGAGCCTAAATATGAGA+AGG | + | chr3_1:86705084-86705103 | None:intergenic | 35.0% | |
| ! | TGTTGCTCCAATATTTTCTC+TGG | - | chr3_1:86705310-86705329 | Msa0383700:intron | 35.0% |
| !! | TTTTGTTTGCTCCTTTGAAC+TGG | + | chr3_1:86705349-86705368 | None:intergenic | 35.0% |
| TTCAAAGGAGCAAACAAAAG+AGG | - | chr3_1:86705350-86705369 | Msa0383700:intron | 35.0% | |
| AGAAGTCAGCACCAAAAAAA+AGG | - | chr3_1:86705748-86705767 | Msa0383700:CDS | 35.0% | |
| GAAGTCAGCACCAAAAAAAA+GGG | - | chr3_1:86705749-86705768 | Msa0383700:CDS | 35.0% | |
| AAGTCAGCACCAAAAAAAAG+GGG | - | chr3_1:86705750-86705769 | Msa0383700:CDS | 35.0% | |
| CATGCTACACGATATATTGT+GGG | + | chr3_1:86706011-86706030 | None:intergenic | 35.0% | |
| ACATGCTACACGATATATTG+TGG | + | chr3_1:86706012-86706031 | None:intergenic | 35.0% | |
| AAGAGGAATTATACGGTTGC+TGG | + | chr3_1:86701982-86702001 | None:intergenic | 40.0% | |
| GAACGAACAAGAGAAAAGAG+AGG | + | chr3_1:86702049-86702068 | None:intergenic | 40.0% | |
| AAATTCTTCCTCGGAGAAGA+CGG | + | chr3_1:86702098-86702117 | None:intergenic | 40.0% | |
| CGTCTCTTCAAATTCTTCCT+CGG | + | chr3_1:86702107-86702126 | None:intergenic | 40.0% | |
| GGAAGAATTTGAAGAGACGA+TGG | - | chr3_1:86702108-86702127 | Msa0383700:CDS | 40.0% | |
| GAATTTGAAGAGACGATGGT+TGG | - | chr3_1:86702112-86702131 | Msa0383700:CDS | 40.0% | |
| !!! | ATGCTTTGTTTTGTCGCTCT+TGG | - | chr3_1:86702249-86702268 | Msa0383700:CDS | 40.0% |
| ACTTAAGATCACCGTAAACC+GGG | + | chr3_1:86702277-86702296 | None:intergenic | 40.0% | |
| TCAAAACCAAATTGGGGAGA+TGG | + | chr3_1:86702804-86702823 | None:intergenic | 40.0% | |
| !! | TTGTACTGAAGAGTGTTAGC+TGG | - | chr3_1:86702972-86702991 | Msa0383700:intron | 40.0% |
| !! | GATTGATTTGCCATTGCATG+AGG | - | chr3_1:86703048-86703067 | Msa0383700:intron | 40.0% |
| ATTTGCCATTGCATGAGGAA+TGG | - | chr3_1:86703053-86703072 | Msa0383700:intron | 40.0% | |
| TCTATCCATTCCTCATGCAA+TGG | + | chr3_1:86703061-86703080 | None:intergenic | 40.0% | |
| GATAGAAAACCCCTGCTTAT+TGG | - | chr3_1:86703075-86703094 | Msa0383700:intron | 40.0% | |
| GAAGATATGCAGATTTCGCT+AGG | - | chr3_1:86703471-86703490 | Msa0383700:intron | 40.0% | |
| ! | TTGGTGTTTATGCAATGGAC+TGG | - | chr3_1:86703513-86703532 | Msa0383700:intron | 40.0% |
| !! | GTTTATGCAATGGACTGGAT+AGG | - | chr3_1:86703518-86703537 | Msa0383700:intron | 40.0% |
| !! | CGTTTTATTGCTACAGGTCA+TGG | - | chr3_1:86703620-86703639 | Msa0383700:intron | 40.0% |
| TTTATTGCTACAGGTCATGG+AGG | - | chr3_1:86703623-86703642 | Msa0383700:intron | 40.0% | |
| TGTTCCTTCTCTTGATCAAG+TGG | - | chr3_1:86703667-86703686 | Msa0383700:intron | 40.0% | |
| TTTCTCTTTGGTCACTCAAC+TGG | - | chr3_1:86703871-86703890 | Msa0383700:intron | 40.0% | |
| CTACCATCACTTCAATGTGA+GGG | + | chr3_1:86704017-86704036 | None:intergenic | 40.0% | |
| TCTACCATCACTTCAATGTG+AGG | + | chr3_1:86704018-86704037 | None:intergenic | 40.0% | |
| CACATTGAAGTGATGGTAGA+AGG | - | chr3_1:86704018-86704037 | Msa0383700:intron | 40.0% | |
| AAGCCATCTCATCCAATAGT+TGG | - | chr3_1:86704072-86704091 | Msa0383700:intron | 40.0% | |
| GCAAAACTTACGCCAACTAT+TGG | + | chr3_1:86704087-86704106 | None:intergenic | 40.0% | |
| CAGTAGTATGATGTGAGCTT+TGG | - | chr3_1:86704297-86704316 | Msa0383700:CDS | 40.0% | |
| GATAAACCTGACTAGATCTG+AGG | - | chr3_1:86704402-86704421 | Msa0383700:intron | 40.0% | |
| TGGCACAAAACTGAACTCAA+TGG | - | chr3_1:86704491-86704510 | Msa0383700:intron | 40.0% | |
| ACACTGTGAGTGGTTAAATC+AGG | + | chr3_1:86704889-86704908 | None:intergenic | 40.0% | |
| ACTCACATTTACACTGTGAG+TGG | + | chr3_1:86704899-86704918 | None:intergenic | 40.0% | |
| ACTCACAGTGTAAATGTGAG+TGG | - | chr3_1:86704898-86704917 | Msa0383700:intron | 40.0% | |
| GGCATGAATGATGCTAAAAC+CGG | - | chr3_1:86704992-86705011 | Msa0383700:intron | 40.0% | |
| ! | AAAACCGGCCTTTATTTCCT+AGG | - | chr3_1:86705007-86705026 | Msa0383700:intron | 40.0% |
| TAAGCCTAGGAAATAAAGGC+CGG | + | chr3_1:86705014-86705033 | None:intergenic | 40.0% | |
| CCTAAATATGAGAAGGGATG+TGG | + | chr3_1:86705077-86705096 | None:intergenic | 40.0% | |
| CCACATCCCTTCTCATATTT+AGG | - | chr3_1:86705074-86705093 | Msa0383700:intron | 40.0% | |
| GGAGCTACCAGAGAAAATAT+TGG | + | chr3_1:86705320-86705339 | None:intergenic | 40.0% | |
| ! | TATTTTCTCTGGTAGCTCCA+AGG | - | chr3_1:86705321-86705340 | Msa0383700:intron | 40.0% |
| !! | AAAGAGGCATTCCAGTTTCT+AGG | - | chr3_1:86705366-86705385 | Msa0383700:intron | 40.0% |
| !! | AAGAGGCATTCCAGTTTCTA+GGG | - | chr3_1:86705367-86705386 | Msa0383700:intron | 40.0% |
| TAGCTCAGGACATTATCAAC+TGG | - | chr3_1:86705669-86705688 | Msa0383700:CDS | 40.0% | |
| TCAGGACATTATCAACTGGA+TGG | - | chr3_1:86705673-86705692 | Msa0383700:CDS | 40.0% | |
| AGTCAGCACCAAAAAAAAGG+GGG | - | chr3_1:86705751-86705770 | Msa0383700:CDS | 40.0% | |
| TTCTACACACTTGCCAACTT+TGG | + | chr3_1:86705797-86705816 | None:intergenic | 40.0% | |
| ! | ATTATCAGGATTTAGGGCCA+CGG | + | chr3_1:86705984-86706003 | None:intergenic | 40.0% |
| TCGATGGAAGACATCGCTAA+CGG | + | chr3_1:86701930-86701949 | None:intergenic | 45.0% | |
| TGTGTAGACGAAGATGAGAG+AGG | + | chr3_1:86702021-86702040 | None:intergenic | 45.0% | |
| ! | TGAAGAGACGATGGTTGGTT+AGG | - | chr3_1:86702117-86702136 | Msa0383700:CDS | 45.0% |
| ! | GAAGAGACGATGGTTGGTTA+GGG | - | chr3_1:86702118-86702137 | Msa0383700:CDS | 45.0% |
| ! | ATGGTTGGTTAGGGAAGAAG+AGG | - | chr3_1:86702127-86702146 | Msa0383700:CDS | 45.0% |
| GGGAAGAAGAGGATACGTTT+AGG | - | chr3_1:86702138-86702157 | Msa0383700:CDS | 45.0% | |
| ! | TACGTTTAGGAGAAGAGCGT+TGG | - | chr3_1:86702151-86702170 | Msa0383700:CDS | 45.0% |
| GTTGGAATGGGTCATGATGA+TGG | - | chr3_1:86702182-86702201 | Msa0383700:CDS | 45.0% | |
| !! | GTCATGATGATGGTTGTTGC+CGG | - | chr3_1:86702192-86702211 | Msa0383700:CDS | 45.0% |
| TGCGGCTCTCTTTAAACACT+TGG | - | chr3_1:86703141-86703160 | Msa0383700:intron | 45.0% | |
| TTCACGGGCTTAATGAACAC+AGG | - | chr3_1:86703211-86703230 | Msa0383700:intron | 45.0% | |
| ! | GTTCTGAGTCAGAATTGGGT+GGG | + | chr3_1:86703438-86703457 | None:intergenic | 45.0% |
| !! | AGTTCTGAGTCAGAATTGGG+TGG | + | chr3_1:86703439-86703458 | None:intergenic | 45.0% |
| GCAACCACTTGATCAAGAGA+AGG | + | chr3_1:86703674-86703693 | None:intergenic | 45.0% | |
| ! | AAGAGAAAGCATGGTATCCC+AGG | + | chr3_1:86703859-86703878 | None:intergenic | 45.0% |
| GGGATACCATGCTTTCTCTT+TGG | - | chr3_1:86703859-86703878 | Msa0383700:intron | 45.0% | |
| GAGTGACCAAAGAGAAAGCA+TGG | + | chr3_1:86703868-86703887 | None:intergenic | 45.0% | |
| TCTTTGGTCACTCAACTGGA+GGG | - | chr3_1:86703875-86703894 | Msa0383700:intron | 45.0% | |
| ATGCCCTCACATTGAAGTGA+TGG | - | chr3_1:86704011-86704030 | Msa0383700:intron | 45.0% | |
| ACGCCAACTATTGGATGAGA+TGG | + | chr3_1:86704078-86704097 | None:intergenic | 45.0% | |
| ! | GGCGTAAGTTTTGCACTTCT+TGG | - | chr3_1:86704093-86704112 | Msa0383700:CDS | 45.0% |
| ! | TGTTGCTTCTGTGCTCAGTT+TGG | - | chr3_1:86704152-86704171 | Msa0383700:intron | 45.0% |
| ! | GATGTGTAACGTGTTGATGC+AGG | - | chr3_1:86705286-86705305 | Msa0383700:intron | 45.0% |
| TACTTTGCCAACAAAGCTGC+TGG | + | chr3_1:86705395-86705414 | None:intergenic | 45.0% | |
| GGACCTATTAGAGTTCGAAC+TGG | - | chr3_1:86705437-86705456 | Msa0383700:intron | 45.0% | |
| TGGCCAGTTCGAACTCTAAT+AGG | + | chr3_1:86705443-86705462 | None:intergenic | 45.0% | |
| GTACCATTCTTTGTCCTGCA+TGG | - | chr3_1:86705515-86705534 | Msa0383700:CDS | 45.0% | |
| GTTCCATGCAGGACAAAGAA+TGG | + | chr3_1:86705521-86705540 | None:intergenic | 45.0% | |
| CTTTATCAGCAGTTCCATGC+AGG | + | chr3_1:86705532-86705551 | None:intergenic | 45.0% | |
| !!! | TGGCAACACCCCCTTTTTTT+TGG | + | chr3_1:86705762-86705781 | None:intergenic | 45.0% |
| !! | AATATTTATTTATATGTATT+GGG | + | chr3_1:86703374-86703393 | None:intergenic | 5.0% |
| !! | AAATATTTATTTATATGTAT+TGG | + | chr3_1:86703375-86703394 | None:intergenic | 5.0% |
| !!! | TAAAAATATCATATTTTTAT+TGG | - | chr3_1:86704747-86704766 | Msa0383700:intron | 5.0% |
| !!! | ATTCATATTTTATTTTATTT+AGG | - | chr3_1:86705860-86705879 | Msa0383700:five_prime_UTR | 5.0% |
| ATGGAAGACATCGCTAACGG+CGG | + | chr3_1:86701927-86701946 | None:intergenic | 50.0% | |
| !! | GCTCTGAACGCTTTGAGAAG+AGG | + | chr3_1:86701999-86702018 | None:intergenic | 50.0% |
| TCTTGTTCGTTCTCCCTCGT+CGG | - | chr3_1:86702057-86702076 | Msa0383700:exon | 50.0% | |
| TTGGCGCAGGATGTTGGAAT+GGG | - | chr3_1:86702170-86702189 | Msa0383700:CDS | 50.0% | |
| !! | ATGATGATGGTTGTTGCCGG+TGG | - | chr3_1:86702195-86702214 | Msa0383700:CDS | 50.0% |
| ! | GTTTTGTCGCTCTTGGTTCC+CGG | - | chr3_1:86702256-86702275 | Msa0383700:CDS | 50.0% |
| GGATCACCATCTCCCCAATT+TGG | - | chr3_1:86702795-86702814 | Msa0383700:intron | 50.0% | |
| AAAGGGCTGCCAATAAGCAG+GGG | + | chr3_1:86703087-86703106 | None:intergenic | 50.0% | |
| GAAAGGGCTGCCAATAAGCA+GGG | + | chr3_1:86703088-86703107 | None:intergenic | 50.0% | |
| AAGAGAGCCGCACAACTGTA+TGG | + | chr3_1:86703133-86703152 | None:intergenic | 50.0% | |
| ! | CAGCTTTTGTTGGGGGTCTT+CGG | - | chr3_1:86703344-86703363 | Msa0383700:intron | 50.0% |
| ! | AGCTTTTGTTGGGGGTCTTC+GGG | - | chr3_1:86703345-86703364 | Msa0383700:intron | 50.0% |
| !! | GGAGGTAGCGATGGATTACA+TGG | - | chr3_1:86703641-86703660 | Msa0383700:intron | 50.0% |
| CTCTTTGGTCACTCAACTGG+AGG | - | chr3_1:86703874-86703893 | Msa0383700:intron | 50.0% | |
| CTTTGGTCACTCAACTGGAG+GGG | - | chr3_1:86703876-86703895 | Msa0383700:intron | 50.0% | |
| AGGCAGGGATGCTTCTTTCA+TGG | + | chr3_1:86704229-86704248 | None:intergenic | 50.0% | |
| TGAGTGCCTCAGATCTAGTC+AGG | + | chr3_1:86704411-86704430 | None:intergenic | 50.0% | |
| GCTCCAAGGTTCCAGTTCAA+AGG | - | chr3_1:86705335-86705354 | Msa0383700:intron | 50.0% | |
| GCTCCTTTGAACTGGAACCT+TGG | + | chr3_1:86705341-86705360 | None:intergenic | 50.0% | |
| ! | TAGGGATCCAGCAGCTTTGT+TGG | - | chr3_1:86705385-86705404 | Msa0383700:intron | 50.0% |
| ! | GGCAAAGTACTCTGATCCTC+TGG | - | chr3_1:86705406-86705425 | Msa0383700:intron | 50.0% |
| TCTGATCCTCTGGTCTACAC+AGG | - | chr3_1:86705416-86705435 | Msa0383700:intron | 50.0% | |
| ATAGGTCCTGTGTAGACCAG+AGG | + | chr3_1:86705425-86705444 | None:intergenic | 50.0% | |
| !! | GCACGACCTTTTGTTTGAGC+CGG | - | chr3_1:86705634-86705653 | Msa0383700:CDS | 50.0% |
| TGAGCTATCTCTTCACGCTC+CGG | + | chr3_1:86705656-86705675 | None:intergenic | 50.0% | |
| TCGTTCTCCCTCGTCGGAAT+AGG | - | chr3_1:86702063-86702082 | Msa0383700:exon | 55.0% | |
| TCTCCCTCGTCGGAATAGGA+CGG | - | chr3_1:86702067-86702086 | Msa0383700:exon | 55.0% | |
| TTCTTCCTCGGAGAAGACGG+TGG | + | chr3_1:86702095-86702114 | None:intergenic | 55.0% | |
| GTTGGCGCAGGATGTTGGAA+TGG | - | chr3_1:86702169-86702188 | Msa0383700:CDS | 55.0% | |
| CGCTCTTGGTTCCCGGTTTA+CGG | - | chr3_1:86702263-86702282 | Msa0383700:CDS | 55.0% | |
| CGAAAGGGCTGCCAATAAGC+AGG | + | chr3_1:86703089-86703108 | None:intergenic | 55.0% | |
| ACAGGTCATGGAGGTAGCGA+TGG | - | chr3_1:86703632-86703651 | Msa0383700:intron | 55.0% | |
| GATGGCTTCACACGCAAAGC+TGG | + | chr3_1:86704060-86704079 | None:intergenic | 55.0% | |
| GCTGCTGGATCCCTAGAAAC+TGG | + | chr3_1:86705380-86705399 | None:intergenic | 55.0% | |
| CACGCTCCGGCTCAAACAAA+AGG | + | chr3_1:86705643-86705662 | None:intergenic | 55.0% | |
| GGAGCGTGAAGAGATAGCTC+AGG | - | chr3_1:86705655-86705674 | Msa0383700:CDS | 55.0% | |
| AGTGAAGTCGTCCCGAAGAG+TGG | - | chr3_1:86705817-86705836 | Msa0383700:CDS | 55.0% | |
| GTGAAGTCGTCCCGAAGAGT+GGG | - | chr3_1:86705818-86705837 | Msa0383700:CDS | 55.0% | |
| !! | TGGTGGTGGCGGAGGAAAGT+GGG | + | chr3_1:86701892-86701911 | None:intergenic | 60.0% |
| GAAGACATCGCTAACGGCGG+CGG | + | chr3_1:86701924-86701943 | None:intergenic | 60.0% | |
| GTCTTCCATCGATGCGCCGA+TGG | - | chr3_1:86701938-86701957 | Msa0383700:three_prime_UTR | 60.0% | |
| GCCGATGGAGCCACTAACGT+CGG | - | chr3_1:86701953-86701972 | Msa0383700:three_prime_UTR | 60.0% | |
| CCCGACGTTAGTGGCTCCAT+CGG | + | chr3_1:86701957-86701976 | None:intergenic | 60.0% | |
| CCGATGGAGCCACTAACGTC+GGG | - | chr3_1:86701954-86701973 | Msa0383700:three_prime_UTR | 60.0% | |
| !! | TTGCTGGCTCCCGACGTTAG+TGG | + | chr3_1:86701966-86701985 | None:intergenic | 60.0% |
| GAGCCGTCCTATTCCGACGA+GGG | + | chr3_1:86702073-86702092 | None:intergenic | 60.0% | |
| !! | TAGGAGAAGAGCGTTGGCGC+AGG | - | chr3_1:86702157-86702176 | Msa0383700:CDS | 60.0% |
| !! | AGAGCGTTGGCGCAGGATGT+TGG | - | chr3_1:86702164-86702183 | Msa0383700:CDS | 60.0% |
| TCACTCAACTGGAGGGGCTG+TGG | - | chr3_1:86703882-86703901 | Msa0383700:CDS | 60.0% | |
| GATGCAAGGGACGCGATGCT+GGG | + | chr3_1:86704948-86704967 | None:intergenic | 60.0% | |
| AGATGCAAGGGACGCGATGC+TGG | + | chr3_1:86704949-86704968 | None:intergenic | 60.0% | |
| AAGTCGTCCCGAAGAGTGGG+TGG | - | chr3_1:86705821-86705840 | Msa0383700:CDS | 60.0% | |
| TGCTTCCGCCACCCACTCTT+CGG | + | chr3_1:86705832-86705851 | None:intergenic | 60.0% | |
| !! | AGTGGGTGGCGGAAGCACAT+AGG | - | chr3_1:86705835-86705854 | Msa0383700:CDS | 60.0% |
| !! | AGTGGGGGTGGCGGAAGAAG+CGG | + | chr3_1:86701875-86701894 | None:intergenic | 65.0% |
| !! | GTGGTGGCGGAGGAAAGTGG+GGG | + | chr3_1:86701890-86701909 | None:intergenic | 65.0% |
| !! | GGTGGTGGCGGAGGAAAGTG+GGG | + | chr3_1:86701891-86701910 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGCGGAGGAAAG+TGG | + | chr3_1:86701893-86701912 | None:intergenic | 65.0% |
| TGGCTCCATCGGCGCATCGA+TGG | + | chr3_1:86701946-86701965 | None:intergenic | 65.0% | |
| GGAGCCGTCCTATTCCGACG+AGG | + | chr3_1:86702074-86702093 | None:intergenic | 65.0% | |
| TCGTCCCGAAGAGTGGGTGG+CGG | - | chr3_1:86705824-86705843 | Msa0383700:CDS | 65.0% | |
| GCTTCCGCCACCCACTCTTC+GGG | + | chr3_1:86705831-86705850 | None:intergenic | 65.0% | |
| GCGGAGGAAAGTGGGGGTGG+CGG | + | chr3_1:86701884-86701903 | None:intergenic | 70.0% | |
| ! | GTGGCGGAGGAAAGTGGGGG+TGG | + | chr3_1:86701887-86701906 | None:intergenic | 70.0% |
| GACATCGCTAACGGCGGCGG+CGG | + | chr3_1:86701921-86701940 | None:intergenic | 70.0% | |
| CGGCTCCACCGTCTTCTCCG+AGG | - | chr3_1:86702087-86702106 | Msa0383700:CDS | 70.0% | |
| ATCGCTAACGGCGGCGGCGG+CGG | + | chr3_1:86701918-86701937 | None:intergenic | 75.0% | |
| !!! | GGCGGTGGTGGTGGTGGCGG+AGG | + | chr3_1:86701900-86701919 | None:intergenic | 80.0% |
| !!! | GGCGGCGGTGGTGGTGGTGG+CGG | + | chr3_1:86701903-86701922 | None:intergenic | 80.0% |
| !!! | GGCGGCGGCGGTGGTGGTGG+TGG | + | chr3_1:86701906-86701925 | None:intergenic | 85.0% |
| ! | AACGGCGGCGGCGGCGGTGG+TGG | + | chr3_1:86701912-86701931 | None:intergenic | 85.0% |
| ! | GCTAACGGCGGCGGCGGCGG+TGG | + | chr3_1:86701915-86701934 | None:intergenic | 85.0% |
| !! | GGCGGCGGCGGCGGTGGTGG+TGG | + | chr3_1:86701909-86701928 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86701698 | 86706093 | 86701698 | ID=Msa0383700;Name=Msa0383700 |
| chr3_1 | mRNA | 86701698 | 86706093 | 86701698 | ID=Msa0383700-mRNA-1;Parent=Msa0383700;Name=Msa0383700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=238|1|1|1|1|1|7|372|376 |
| chr3_1 | exon | 86701698 | 86702483 | 86701698 | ID=Msa0383700-mRNA-1:exon:22990;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86703696 | 86703788 | 86703696 | ID=Msa0383700-mRNA-1:exon:22989;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86703879 | 86703968 | 86703879 | ID=Msa0383700-mRNA-1:exon:22988;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86704091 | 86704155 | 86704091 | ID=Msa0383700-mRNA-1:exon:22987;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86704252 | 86704322 | 86704252 | ID=Msa0383700-mRNA-1:exon:22986;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86704559 | 86704597 | 86704559 | ID=Msa0383700-mRNA-1:exon:22985;Parent=Msa0383700-mRNA-1 |
| chr3_1 | exon | 86705497 | 86706093 | 86705497 | ID=Msa0383700-mRNA-1:exon:22984;Parent=Msa0383700-mRNA-1 |
| chr3_1 | five_prime_UTR | 86705856 | 86706093 | 86705856 | ID=Msa0383700-mRNA-1:five_prime_utr;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86705497 | 86705855 | 86705497 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86704559 | 86704597 | 86704559 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86704252 | 86704322 | 86704252 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86704091 | 86704155 | 86704091 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86703879 | 86703968 | 86703879 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86703696 | 86703788 | 86703696 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | CDS | 86702070 | 86702483 | 86702070 | ID=Msa0383700-mRNA-1:cds;Parent=Msa0383700-mRNA-1 |
| chr3_1 | three_prime_UTR | 86701698 | 86702069 | 86701698 | ID=Msa0383700-mRNA-1:three_prime_utr;Parent=Msa0383700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
