AlfalfaGEDB | Msa0384120

M. sativa cultivar zhongmu-4 / Msa0384120

KEGG: -
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0384120	XP_013462122.1	94.505	91	5	0	1	91	1	91	1.43e-58	184

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0384120	sp\|F4JVB8\|RADL1_ARATH	59.770	87	33	1	7	91	14	100	1.40e-31	109

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0384120	A0A072V2R8	94.505	91	5	0	1	91	1	91	6.85e-59	184

TFs/TRs:

Gene ID	Type	Classification
Msa0384120	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0384120	Msa0434850	0.843490	1.357049e-58	-8.615850e-47
Msa0384120	Msa0522840	0.855917	4.572827e-62	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0384120	MtrunA17_Chr3g0141601	94.505	91	5	0	1	91	1	91	1.32e-62	184
Msa0384120	MtrunA17_Chr1g0155181	75.862	87	17	2	1	84	1	86	2.28e-43	135
Msa0384120	MtrunA17_Chr3g0144631	72.059	68	19	0	5	72	14	81	2.20e-33	110
Msa0384120	MtrunA17_Chr3g0081631	57.609	92	34	2	1	91	4	91	1.79e-32	108
Msa0384120	MtrunA17_Chr7g0255841	60.241	83	29	1	9	91	14	92	2.65e-29	100
Msa0384120	MtrunA17_Chr6g0449111	57.143	70	30	0	2	71	5	74	3.20e-26	92.0
Msa0384120	MtrunA17_Chr8g0373111	55.714	70	30	1	4	73	2	70	2.12e-25	90.1
Msa0384120	MtrunA17_Chr8g0373121	55.714	70	30	1	4	73	2	70	2.12e-25	90.1
Msa0384120	MtrunA17_Chr8g0373131	55.714	70	30	1	4	73	2	70	2.63e-25	89.7
Msa0384120	MtrunA17_Chr5g0404101	61.194	67	26	0	3	69	15	81	1.78e-24	88.2
Msa0384120	MtrunA17_Chr3g0141641	45.556	90	44	1	7	91	3	92	2.62e-24	87.8
Msa0384120	MtrunA17_Chr8g0373101	58.571	70	28	1	4	73	2	70	6.00e-24	86.3
Msa0384120	MtrunA17_Chr5g0404301	61.905	63	23	1	5	67	2	63	1.14e-22	82.8
Msa0384120	MtrunA17_Chr8g0364741	53.623	69	32	0	1	69	4	72	2.51e-21	81.3
Msa0384120	MtrunA17_Chr5g0429521	45.652	92	39	1	4	84	26	117	4.68e-21	84.3
Msa0384120	MtrunA17_Chr5g0436501	55.385	65	29	0	5	69	25	89	5.19e-21	83.6
Msa0384120	MtrunA17_Chr1g0162081	56.522	69	30	0	4	72	9	77	5.33e-21	84.0
Msa0384120	MtrunA17_Chr8g0365011	57.576	66	28	0	4	69	5	70	6.11e-21	83.6
Msa0384120	MtrunA17_Chr7g0241761	50.000	78	36	1	5	82	33	107	2.62e-20	82.4
Msa0384120	MtrunA17_Chr3g0104071	53.731	67	31	0	4	70	40	106	3.37e-19	79.7
Msa0384120	MtrunA17_Chr4g0062741	46.667	75	37	2	2	73	3	77	1.50e-17	74.7
Msa0384120	MtrunA17_Chr1g0210471	46.269	67	36	0	5	71	22	88	4.25e-17	72.8
Msa0384120	MtrunA17_Chr1g0194071	49.153	59	29	1	5	62	9	67	3.07e-14	62.4
Msa0384120	MtrunA17_Chr7g0270711	49.206	63	31	1	3	64	7	69	5.72e-14	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0384120	AT4G39250.1	59.770	87	33	1	7	91	14	100	1.42e-32	109
Msa0384120	AT2G21650.1	57.955	88	34	1	7	91	14	101	2.28e-31	106
Msa0384120	AT1G75250.1	72.059	68	19	0	2	69	7	74	5.69e-31	105
Msa0384120	AT1G75250.2	62.637	91	32	2	2	90	7	97	1.02e-30	104
Msa0384120	AT1G19510.1	68.182	66	20	1	10	74	15	80	1.16e-25	91.7
Msa0384120	AT2G18328.1	64.516	62	22	0	10	71	14	75	4.46e-25	89.7
Msa0384120	AT2G38090.1	52.174	69	33	0	4	72	26	94	5.50e-21	84.3
Msa0384120	AT5G58900.1	54.545	66	30	0	4	69	31	96	1.57e-20	83.2
Msa0384120	AT5G05790.2	47.436	78	39	1	4	79	28	105	1.55e-19	80.1
Msa0384120	AT5G05790.1	47.436	78	39	1	4	79	28	105	1.55e-19	80.1
Msa0384120	AT4G36570.1	72.727	44	12	0	7	50	12	55	2.84e-18	72.0
Msa0384120	AT3G11280.2	46.053	76	38	1	7	79	33	108	1.87e-17	74.7
Msa0384120	AT3G11280.1	46.053	76	38	1	7	79	33	108	1.87e-17	74.7
Msa0384120	AT5G08520.1	44.737	76	42	0	1	76	6	81	9.86e-16	70.5
Msa0384120	AT5G01200.1	34.951	103	49	2	5	89	28	130	1.43e-15	69.7
Msa0384120	AT1G49010.1	41.250	80	42	2	5	81	6	83	5.58e-14	65.5
Msa0384120	AT5G04760.1	40.299	67	39	1	3	69	2	67	6.73e-13	61.6
Msa0384120	AT5G23650.1	42.029	69	40	0	1	69	7	75	5.60e-12	60.1

Find 40 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAAATTATCTAATTAAATC+TGG	0.303640	3_1:+87218497	None:intergenic
TTGGTTGCTACTACAATTAA+TGG	0.306877	3_1:-87219519	Msa0384120:exon
CCAACATTATTTGTGTAATT+AGG	0.311673	3_1:+87219302	None:intergenic
AGAACCTTGTTGAAGATATT+AGG	0.315510	3_1:-87219352	Msa0384120:CDS
ACATAATGGATCAAGATAAA+AGG	0.337165	3_1:-87219271	Msa0384120:intron
CTTGCATAATCACCCTTTAG+TGG	0.360191	3_1:+87218767	None:intergenic
AGGGACAGAGAGTAATAAAA+AGG	0.360193	3_1:+87218715	None:intergenic
GTCCCTCTCTATGAAGTATC+CGG	0.365923	3_1:-87218698	Msa0384120:three_prime_UTR
TAATGGCTTCAAGTTCGAAT+TGG	0.366111	3_1:-87219502	Msa0384120:CDS
ATCATACGTAGTATTGTTGT+TGG	0.383323	3_1:-87219538	Msa0384120:five_prime_UTR
TGTTGGTTACAATTACATAA+TGG	0.412132	3_1:-87219285	Msa0384120:CDS
TCTCCACATGTATACTATAT+AGG	0.413310	3_1:+87218630	None:intergenic
CATTATTTGTGTAATTAGGC+AGG	0.435090	3_1:+87219306	None:intergenic
GGCTCTAAGTCTCCACTAAA+GGG	0.466211	3_1:-87218779	Msa0384120:exon
GCCACCTTCTGCCAACGATC+AGG	0.467098	3_1:+87219422	None:intergenic
TGAGAATGCGTTGGCAATGT+TGG	0.488680	3_1:-87219456	Msa0384120:CDS
TGTAATTAGGCAGGGGAACA+TGG	0.488710	3_1:+87219315	None:intergenic
CCTAATTACACAAATAATGT+TGG	0.495931	3_1:-87219302	Msa0384120:CDS
TGTATAGAAAATACAATGCC+CGG	0.500439	3_1:+87218679	None:intergenic
AGGCTCTAAGTCTCCACTAA+AGG	0.510302	3_1:-87218780	Msa0384120:exon
ATTATTTGTGTAATTAGGCA+GGG	0.547965	3_1:+87219307	None:intergenic
GCAGAAGGTGGCTAGAGCTG+TGG	0.552998	3_1:-87219411	Msa0384120:CDS
CAAAAGATTTGAGAATGCGT+TGG	0.553213	3_1:-87219465	Msa0384120:CDS
TCATGCATGATGCAGGATGA+AGG	0.557115	3_1:-87218800	Msa0384120:intron
CTACGTATGATGTTTAATGA+AGG	0.557260	3_1:+87219550	None:intergenic
CAGAAGGTGGCTAGAGCTGT+GGG	0.558074	3_1:-87219410	Msa0384120:CDS
TCCCTCTCTATGAAGTATCC+GGG	0.572119	3_1:-87218697	Msa0384120:three_prime_UTR
CACTCCTGATCGTTGGCAGA+AGG	0.576549	3_1:-87219426	Msa0384120:CDS
GATATTAGGCAGATCGAGGA+AGG	0.589514	3_1:-87219338	Msa0384120:CDS
TTATTTGTGTAATTAGGCAG+GGG	0.601636	3_1:+87219308	None:intergenic
TCCTGATCGTTGGCAGAAGG+TGG	0.602919	3_1:-87219423	Msa0384120:CDS
ACAAGGACACTCCTGATCGT+TGG	0.625458	3_1:-87219433	Msa0384120:CDS
TGCCCGGATACTTCATAGAG+AGG	0.629461	3_1:+87218695	None:intergenic
TGCGTTGGCAATGTTGGACA+AGG	0.631324	3_1:-87219450	Msa0384120:CDS
GCCCGGATACTTCATAGAGA+GGG	0.632827	3_1:+87218696	None:intergenic
TTTCCTATATAGTATACATG+TGG	0.641933	3_1:-87218633	Msa0384120:three_prime_UTR
TGAAGATATTAGGCAGATCG+AGG	0.643314	3_1:-87219342	Msa0384120:CDS
AGGTGGCTAGAGCTGTGGGA+GGG	0.662019	3_1:-87219406	Msa0384120:CDS
AAGGTGGCTAGAGCTGTGGG+AGG	0.685328	3_1:-87219407	Msa0384120:CDS
TCTGCCTAATATCTTCAACA+AGG	0.692316	3_1:+87219348	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATTTATATGTTTATAAGT+AGG	-	chr3_1:87219038-87219057	Msa0384120:intron	10.0%
!!	GATCAAATAAATAATATAAT+TGG	+	chr3_1:87219201-87219220	None:intergenic	10.0%
!!	TAAAATTATCTAATTAAATC+TGG	+	chr3_1:87219552-87219571	None:intergenic	10.0%
!!	ATATTTATATGTTTATAAGT+AGG	-	chr3_1:87219038-87219057	Msa0384120:intron	10.0%
!!	GATCAAATAAATAATATAAT+TGG	+	chr3_1:87219201-87219220	None:intergenic	10.0%
!!	TAAAATTATCTAATTAAATC+TGG	+	chr3_1:87219552-87219571	None:intergenic	10.0%
!!	TATATTATTTATTTGATCTC+TGG	-	chr3_1:87219203-87219222	Msa0384120:intron	15.0%
!!	GATAAATGATAAAAACATAT+TGG	-	chr3_1:87219466-87219485	Msa0384120:CDS	15.0%
!!!	TCAAATAAAATTTTAATCTC+AGG	-	chr3_1:87219510-87219529	Msa0384120:exon	15.0%
!!	TATATTATTTATTTGATCTC+TGG	-	chr3_1:87219203-87219222	Msa0384120:intron	15.0%
!!	GATAAATGATAAAAACATAT+TGG	-	chr3_1:87219466-87219485	Msa0384120:CDS	15.0%
!!!	TCAAATAAAATTTTAATCTC+AGG	-	chr3_1:87219510-87219529	Msa0384120:exon	15.0%
!!!	TGATTTGTTGTAGATTAATA+TGG	-	chr3_1:87218868-87218887	Msa0384120:intron	20.0%
!!!	TTTATTCAAGTTTTTTGGTT+TGG	+	chr3_1:87218952-87218971	None:intergenic	20.0%
!!!	TTGGTTTTATTCAAGTTTTT+TGG	+	chr3_1:87218957-87218976	None:intergenic	20.0%
!!!	ATTGCTGTTTTAATTGTTTT+TGG	+	chr3_1:87218976-87218995	None:intergenic	20.0%
!!	GATATTCTTAAAGTTAAGAT+TGG	+	chr3_1:87219108-87219127	None:intergenic	20.0%
!!!	ATTTTATTTGACAGAACTAA+CGG	+	chr3_1:87219501-87219520	None:intergenic	20.0%
!!!	TGATTTGTTGTAGATTAATA+TGG	-	chr3_1:87218868-87218887	Msa0384120:intron	20.0%
!!!	TTTATTCAAGTTTTTTGGTT+TGG	+	chr3_1:87218952-87218971	None:intergenic	20.0%
!!!	TTGGTTTTATTCAAGTTTTT+TGG	+	chr3_1:87218957-87218976	None:intergenic	20.0%
!!!	ATTGCTGTTTTAATTGTTTT+TGG	+	chr3_1:87218976-87218995	None:intergenic	20.0%
!!	GATATTCTTAAAGTTAAGAT+TGG	+	chr3_1:87219108-87219127	None:intergenic	20.0%
!!!	ATTTTATTTGACAGAACTAA+CGG	+	chr3_1:87219501-87219520	None:intergenic	20.0%
!	ATTATTTGTGTAATTAGGCA+GGG	+	chr3_1:87218742-87218761	None:intergenic	25.0%
!	CCAACATTATTTGTGTAATT+AGG	+	chr3_1:87218747-87218766	None:intergenic	25.0%
!	CCTAATTACACAAATAATGT+TGG	-	chr3_1:87218744-87218763	Msa0384120:three_prime_UTR	25.0%
!!	TGTTGGTTACAATTACATAA+TGG	-	chr3_1:87218761-87218780	Msa0384120:three_prime_UTR	25.0%
!!!	ACATAATGGATCAAGATAAA+AGG	-	chr3_1:87218775-87218794	Msa0384120:exon	25.0%
!!	TTCATGTGTAACAAACATTT+TGG	+	chr3_1:87219134-87219153	None:intergenic	25.0%
!	TGCATGTATGAATAATAATC+AGG	+	chr3_1:87219160-87219179	None:intergenic	25.0%
!	TGATTATTATTCATACATGC+AGG	-	chr3_1:87219159-87219178	Msa0384120:intron	25.0%
!	TTTCCTATATAGTATACATG+TGG	-	chr3_1:87219413-87219432	Msa0384120:CDS	25.0%
!	ATTATTTGTGTAATTAGGCA+GGG	+	chr3_1:87218742-87218761	None:intergenic	25.0%
!	CCAACATTATTTGTGTAATT+AGG	+	chr3_1:87218747-87218766	None:intergenic	25.0%
!	CCTAATTACACAAATAATGT+TGG	-	chr3_1:87218744-87218763	Msa0384120:three_prime_UTR	25.0%
!!	TGTTGGTTACAATTACATAA+TGG	-	chr3_1:87218761-87218780	Msa0384120:three_prime_UTR	25.0%
!!!	ACATAATGGATCAAGATAAA+AGG	-	chr3_1:87218775-87218794	Msa0384120:exon	25.0%
!!	TTCATGTGTAACAAACATTT+TGG	+	chr3_1:87219134-87219153	None:intergenic	25.0%
!	TGCATGTATGAATAATAATC+AGG	+	chr3_1:87219160-87219179	None:intergenic	25.0%
!	TGATTATTATTCATACATGC+AGG	-	chr3_1:87219159-87219178	Msa0384120:intron	25.0%
!	TTTCCTATATAGTATACATG+TGG	-	chr3_1:87219413-87219432	Msa0384120:CDS	25.0%
	CTACGTATGATGTTTAATGA+AGG	+	chr3_1:87218499-87218518	None:intergenic	30.0%
	ATCATACGTAGTATTGTTGT+TGG	-	chr3_1:87218508-87218527	Msa0384120:three_prime_UTR	30.0%
	TTGGTTGCTACTACAATTAA+TGG	-	chr3_1:87218527-87218546	Msa0384120:three_prime_UTR	30.0%
!	AAATCTTTTGTTCTGCTTTG+CGG	+	chr3_1:87218571-87218590	None:intergenic	30.0%
	AGAACCTTGTTGAAGATATT+AGG	-	chr3_1:87218694-87218713	Msa0384120:three_prime_UTR	30.0%
	TTATTTGTGTAATTAGGCAG+GGG	+	chr3_1:87218741-87218760	None:intergenic	30.0%
	CATTATTTGTGTAATTAGGC+AGG	+	chr3_1:87218743-87218762	None:intergenic	30.0%
!!	CATTGTGTTTGATTGGTTTA+AGG	+	chr3_1:87218894-87218913	None:intergenic	30.0%
	CTAGTTTCATTGTGTTTGAT+TGG	+	chr3_1:87218901-87218920	None:intergenic	30.0%
!	ACTTTACATAACTAGCTTGA+AGG	+	chr3_1:87219076-87219095	None:intergenic	30.0%
	TGTATAGAAAATACAATGCC+CGG	+	chr3_1:87219370-87219389	None:intergenic	30.0%
	TCTCCACATGTATACTATAT+AGG	+	chr3_1:87219419-87219438	None:intergenic	30.0%
	CTACGTATGATGTTTAATGA+AGG	+	chr3_1:87218499-87218518	None:intergenic	30.0%
	ATCATACGTAGTATTGTTGT+TGG	-	chr3_1:87218508-87218527	Msa0384120:three_prime_UTR	30.0%
	TTGGTTGCTACTACAATTAA+TGG	-	chr3_1:87218527-87218546	Msa0384120:three_prime_UTR	30.0%
!	AAATCTTTTGTTCTGCTTTG+CGG	+	chr3_1:87218571-87218590	None:intergenic	30.0%
	AGAACCTTGTTGAAGATATT+AGG	-	chr3_1:87218694-87218713	Msa0384120:three_prime_UTR	30.0%
	TTATTTGTGTAATTAGGCAG+GGG	+	chr3_1:87218741-87218760	None:intergenic	30.0%
	CATTATTTGTGTAATTAGGC+AGG	+	chr3_1:87218743-87218762	None:intergenic	30.0%
!!	CATTGTGTTTGATTGGTTTA+AGG	+	chr3_1:87218894-87218913	None:intergenic	30.0%
	CTAGTTTCATTGTGTTTGAT+TGG	+	chr3_1:87218901-87218920	None:intergenic	30.0%
!	ACTTTACATAACTAGCTTGA+AGG	+	chr3_1:87219076-87219095	None:intergenic	30.0%
	TGTATAGAAAATACAATGCC+CGG	+	chr3_1:87219370-87219389	None:intergenic	30.0%
	TCTCCACATGTATACTATAT+AGG	+	chr3_1:87219419-87219438	None:intergenic	30.0%
!	TAATGGCTTCAAGTTCGAAT+TGG	-	chr3_1:87218544-87218563	Msa0384120:three_prime_UTR	35.0%
	CAAAAGATTTGAGAATGCGT+TGG	-	chr3_1:87218581-87218600	Msa0384120:three_prime_UTR	35.0%
	TCTGCCTAATATCTTCAACA+AGG	+	chr3_1:87218701-87218720	None:intergenic	35.0%
	GTATTTATCATGCATGATGC+AGG	-	chr3_1:87219239-87219258	Msa0384120:intron	35.0%
	AGGGACAGAGAGTAATAAAA+AGG	+	chr3_1:87219334-87219353	None:intergenic	35.0%
!	TAATGGCTTCAAGTTCGAAT+TGG	-	chr3_1:87218544-87218563	Msa0384120:three_prime_UTR	35.0%
	CAAAAGATTTGAGAATGCGT+TGG	-	chr3_1:87218581-87218600	Msa0384120:three_prime_UTR	35.0%
	TCTGCCTAATATCTTCAACA+AGG	+	chr3_1:87218701-87218720	None:intergenic	35.0%
	GTATTTATCATGCATGATGC+AGG	-	chr3_1:87219239-87219258	Msa0384120:intron	35.0%
	AGGGACAGAGAGTAATAAAA+AGG	+	chr3_1:87219334-87219353	None:intergenic	35.0%
	TGAAGATATTAGGCAGATCG+AGG	-	chr3_1:87218704-87218723	Msa0384120:three_prime_UTR	40.0%
	CTTGCATAATCACCCTTTAG+TGG	+	chr3_1:87219282-87219301	None:intergenic	40.0%
	TGAAGATATTAGGCAGATCG+AGG	-	chr3_1:87218704-87218723	Msa0384120:three_prime_UTR	40.0%
	CTTGCATAATCACCCTTTAG+TGG	+	chr3_1:87219282-87219301	None:intergenic	40.0%
!	TGAGAATGCGTTGGCAATGT+TGG	-	chr3_1:87218590-87218609	Msa0384120:three_prime_UTR	45.0%
	GATATTAGGCAGATCGAGGA+AGG	-	chr3_1:87218708-87218727	Msa0384120:three_prime_UTR	45.0%
	TGTAATTAGGCAGGGGAACA+TGG	+	chr3_1:87218734-87218753	None:intergenic	45.0%
	TCATGCATGATGCAGGATGA+AGG	-	chr3_1:87219246-87219265	Msa0384120:intron	45.0%
!!	AGGCTCTAAGTCTCCACTAA+AGG	-	chr3_1:87219266-87219285	Msa0384120:intron	45.0%
!!	GGCTCTAAGTCTCCACTAAA+GGG	-	chr3_1:87219267-87219286	Msa0384120:intron	45.0%
!	GTCCCTCTCTATGAAGTATC+CGG	-	chr3_1:87219348-87219367	Msa0384120:CDS	45.0%
!	TCCCTCTCTATGAAGTATCC+GGG	-	chr3_1:87219349-87219368	Msa0384120:CDS	45.0%
!	TGAGAATGCGTTGGCAATGT+TGG	-	chr3_1:87218590-87218609	Msa0384120:three_prime_UTR	45.0%
	GATATTAGGCAGATCGAGGA+AGG	-	chr3_1:87218708-87218727	Msa0384120:three_prime_UTR	45.0%
	TGTAATTAGGCAGGGGAACA+TGG	+	chr3_1:87218734-87218753	None:intergenic	45.0%
	TCATGCATGATGCAGGATGA+AGG	-	chr3_1:87219246-87219265	Msa0384120:intron	45.0%
!!	AGGCTCTAAGTCTCCACTAA+AGG	-	chr3_1:87219266-87219285	Msa0384120:intron	45.0%
!!	GGCTCTAAGTCTCCACTAAA+GGG	-	chr3_1:87219267-87219286	Msa0384120:intron	45.0%
!	GTCCCTCTCTATGAAGTATC+CGG	-	chr3_1:87219348-87219367	Msa0384120:CDS	45.0%
!	TCCCTCTCTATGAAGTATCC+GGG	-	chr3_1:87219349-87219368	Msa0384120:CDS	45.0%
!!	TAATATATATAAATTGAAAT+TGG	+	chr3_1:87218825-87218844	None:intergenic	5.0%
!!	TAATATATATAAATTGAAAT+TGG	+	chr3_1:87218825-87218844	None:intergenic	5.0%
!	TGCGTTGGCAATGTTGGACA+AGG	-	chr3_1:87218596-87218615	Msa0384120:three_prime_UTR	50.0%
	ACAAGGACACTCCTGATCGT+TGG	-	chr3_1:87218613-87218632	Msa0384120:three_prime_UTR	50.0%
	GCCCGGATACTTCATAGAGA+GGG	+	chr3_1:87219353-87219372	None:intergenic	50.0%
	TGCCCGGATACTTCATAGAG+AGG	+	chr3_1:87219354-87219373	None:intergenic	50.0%
!	TGCGTTGGCAATGTTGGACA+AGG	-	chr3_1:87218596-87218615	Msa0384120:three_prime_UTR	50.0%
	ACAAGGACACTCCTGATCGT+TGG	-	chr3_1:87218613-87218632	Msa0384120:three_prime_UTR	50.0%
	GCCCGGATACTTCATAGAGA+GGG	+	chr3_1:87219353-87219372	None:intergenic	50.0%
	TGCCCGGATACTTCATAGAG+AGG	+	chr3_1:87219354-87219373	None:intergenic	50.0%
	CACTCCTGATCGTTGGCAGA+AGG	-	chr3_1:87218620-87218639	Msa0384120:three_prime_UTR	55.0%
	TCCTGATCGTTGGCAGAAGG+TGG	-	chr3_1:87218623-87218642	Msa0384120:three_prime_UTR	55.0%
	CAGAAGGTGGCTAGAGCTGT+GGG	-	chr3_1:87218636-87218655	Msa0384120:three_prime_UTR	55.0%
	CACTCCTGATCGTTGGCAGA+AGG	-	chr3_1:87218620-87218639	Msa0384120:three_prime_UTR	55.0%
	TCCTGATCGTTGGCAGAAGG+TGG	-	chr3_1:87218623-87218642	Msa0384120:three_prime_UTR	55.0%
	CAGAAGGTGGCTAGAGCTGT+GGG	-	chr3_1:87218636-87218655	Msa0384120:three_prime_UTR	55.0%
	GCCACCTTCTGCCAACGATC+AGG	+	chr3_1:87218627-87218646	None:intergenic	60.0%
	GCAGAAGGTGGCTAGAGCTG+TGG	-	chr3_1:87218635-87218654	Msa0384120:three_prime_UTR	60.0%
	AAGGTGGCTAGAGCTGTGGG+AGG	-	chr3_1:87218639-87218658	Msa0384120:three_prime_UTR	60.0%
	AGGTGGCTAGAGCTGTGGGA+GGG	-	chr3_1:87218640-87218659	Msa0384120:three_prime_UTR	60.0%
	GCCACCTTCTGCCAACGATC+AGG	+	chr3_1:87218627-87218646	None:intergenic	60.0%
	GCAGAAGGTGGCTAGAGCTG+TGG	-	chr3_1:87218635-87218654	Msa0384120:three_prime_UTR	60.0%
	AAGGTGGCTAGAGCTGTGGG+AGG	-	chr3_1:87218639-87218658	Msa0384120:three_prime_UTR	60.0%
	AGGTGGCTAGAGCTGTGGGA+GGG	-	chr3_1:87218640-87218659	Msa0384120:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	87218482	87219586	87218482	ID=Msa0384120;Name=Msa0384120
chr3_1	mRNA	87218482	87219586	87218482	ID=Msa0384120-mRNA-1;Parent=Msa0384120;Name=Msa0384120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=64\|1\|1\|1\|1\|1\|2\|301\|91
chr3_1	exon	87218482	87218807	87218482	ID=Msa0384120-mRNA-1:exon:23265;Parent=Msa0384120-mRNA-1
chr3_1	exon	87219272	87219586	87219272	ID=Msa0384120-mRNA-1:exon:23264;Parent=Msa0384120-mRNA-1
chr3_1	five_prime_UTR	87219523	87219586	87219523	ID=Msa0384120-mRNA-1:five_prime_utr;Parent=Msa0384120-mRNA-1
chr3_1	CDS	87219272	87219522	87219272	ID=Msa0384120-mRNA-1:cds;Parent=Msa0384120-mRNA-1
chr3_1	CDS	87218783	87218807	87218783	ID=Msa0384120-mRNA-1:cds;Parent=Msa0384120-mRNA-1
chr3_1	three_prime_UTR	87218482	87218782	87218482	ID=Msa0384120-mRNA-1:three_prime_utr;Parent=Msa0384120-mRNA-1

Gene Sequence	>Msa0384120 ATGGCTTCAAGTTCGAATTGGACCGCAAAGCAGAACAAAAGATTTGAGAATGCGTTGGCAATGTTGGACAAGGACACTCCTGATCGTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGGAAGACTGTTGAAGAAGTGAAAAGACATTATGAGAACCTTGTTGAAGATATTAGGCAGATCGAGGAAGGCCATGTTCCCCTGCCTAATTACACAAATAATGTTGGTTACAATTACATAATGGATCAAGATAAAAGGATGAAGGCTCTAAGTCTCCACTAA
Protein sequence	>Msa0384120 MASSSNWTAKQNKRFENALAMLDKDTPDRWQKVARAVGGKTVEEVKRHYENLVEDIRQIEEGHVPLPNYTNNVGYNYIMDQDKRMKALSLH*