AlfalfaGEDB | Msa0522840

M. sativa cultivar zhongmu-4 / Msa0522840

KEGG: -
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522840	XP_013462122.1	94.505	91	5	0	1	91	1	91	1.43e-58	184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522840	sp\|F4JVB8\|RADL1_ARATH	59.770	87	33	1	7	91	14	100	1.40e-31	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522840	A0A072V2R8	94.505	91	5	0	1	91	1	91	6.85e-59	184

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TFs/TRs:

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Gene ID	Type	Classification
Msa0522840	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0384120	Msa0522840	0.855917	4.572827e-62	-8.615850e-47
Msa0434850	Msa0522840	0.898835	3.592723e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522840	MtrunA17_Chr3g0141601	94.505	91	5	0	1	91	1	91	1.32e-62	184
Msa0522840	MtrunA17_Chr1g0155181	75.862	87	17	2	1	84	1	86	2.28e-43	135
Msa0522840	MtrunA17_Chr3g0144631	72.059	68	19	0	5	72	14	81	2.20e-33	110
Msa0522840	MtrunA17_Chr3g0081631	57.609	92	34	2	1	91	4	91	1.79e-32	108
Msa0522840	MtrunA17_Chr7g0255841	60.241	83	29	1	9	91	14	92	2.65e-29	100
Msa0522840	MtrunA17_Chr6g0449111	57.143	70	30	0	2	71	5	74	3.20e-26	92.0
Msa0522840	MtrunA17_Chr8g0373111	55.714	70	30	1	4	73	2	70	2.12e-25	90.1
Msa0522840	MtrunA17_Chr8g0373121	55.714	70	30	1	4	73	2	70	2.12e-25	90.1
Msa0522840	MtrunA17_Chr8g0373131	55.714	70	30	1	4	73	2	70	2.63e-25	89.7
Msa0522840	MtrunA17_Chr5g0404101	61.194	67	26	0	3	69	15	81	1.78e-24	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522840	AT4G39250.1	59.770	87	33	1	7	91	14	100	1.42e-32	109
Msa0522840	AT2G21650.1	57.955	88	34	1	7	91	14	101	2.28e-31	106
Msa0522840	AT1G75250.1	72.059	68	19	0	2	69	7	74	5.69e-31	105
Msa0522840	AT1G75250.2	62.637	91	32	2	2	90	7	97	1.02e-30	104
Msa0522840	AT1G19510.1	68.182	66	20	1	10	74	15	80	1.16e-25	91.7
Msa0522840	AT2G18328.1	64.516	62	22	0	10	71	14	75	4.46e-25	89.7
Msa0522840	AT2G38090.1	52.174	69	33	0	4	72	26	94	5.50e-21	84.3
Msa0522840	AT5G58900.1	54.545	66	30	0	4	69	31	96	1.57e-20	83.2
Msa0522840	AT5G05790.2	47.436	78	39	1	4	79	28	105	1.55e-19	80.1
Msa0522840	AT5G05790.1	47.436	78	39	1	4	79	28	105	1.55e-19	80.1

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Find 39 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTGGCTAGAGCTGTGGG+AGG	0.685328	3_4:+76163730	Msa0522840:CDS
ACAAGGACACTCCTGATCGT+TGG	0.625458	3_4:+76163704	Msa0522840:CDS
ACATAATGGATCAAGATAAA+AGG	0.337165	3_4:+76163866	Msa0522840:CDS
AGAACCTTGTTGAAGATATT+AGG	0.315510	3_4:+76163785	Msa0522840:CDS
AGGCTCTAAGTCTCCACTAA+AGG	0.510302	3_4:+76164326	Msa0522840:CDS
AGGGACAGAGAGTAATAAAA+AGG	0.360193	3_4:-76164391	None:intergenic
AGGTGGCTAGAGCTGTGGGA+GGG	0.662019	3_4:+76163731	Msa0522840:CDS
ATCATACGTAGTATTGTTGT+TGG	0.383323	3_4:+76163599	Msa0522840:five_prime_UTR
ATTATTTGTGTAATTAGGCA+GGG	0.547965	3_4:-76163830	None:intergenic
CAAAAGATTTGAGAATGCGT+TGG	0.553213	3_4:+76163672	Msa0522840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTACGTATGATGTTTAATGA+AGG	-	chr3_4:76163590-76163609	None:intergenic	30.0%
ATCATACGTAGTATTGTTGT+TGG	+	chr3_4:76163599-76163618	Msa0522840:five_prime_UTR	30.0%
TTGGTTGCTACTACAATTAA+TGG	+	chr3_4:76163618-76163637	Msa0522840:exon	30.0%
AGAACCTTGTTGAAGATATT+AGG	+	chr3_4:76163785-76163804	Msa0522840:CDS	30.0%
TTATTTGTGTAATTAGGCAG+GGG	-	chr3_4:76163832-76163851	None:intergenic	30.0%
CATTATTTGTGTAATTAGGC+AGG	-	chr3_4:76163834-76163853	None:intergenic	30.0%
CTAGTTTCATTGTGTTTGAT+TGG	-	chr3_4:76163961-76163980	None:intergenic	30.0%
TCTCCACATGTATACTATAT+AGG	-	chr3_4:76164479-76164498	None:intergenic	30.0%
CTACGTATGATGTTTAATGA+AGG	-	chr3_4:76163590-76163609	None:intergenic	30.0%
ATCATACGTAGTATTGTTGT+TGG	+	chr3_4:76163599-76163618	Msa0522840:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	76163573	76164653	76163573	ID=Msa0522840;Name=Msa0522840
chr3_4	mRNA	76163573	76164653	76163573	ID=Msa0522840-mRNA-1;Parent=Msa0522840;Name=Msa0522840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=64\|1\|1\|1\|1\|1\|2\|308\|91
chr3_4	exon	76163573	76163887	76163573	ID=Msa0522840-mRNA-1:exon:21910;Parent=Msa0522840-mRNA-1
chr3_4	exon	76164321	76164653	76164321	ID=Msa0522840-mRNA-1:exon:21911;Parent=Msa0522840-mRNA-1
chr3_4	five_prime_UTR	76163573	76163636	76163573	ID=Msa0522840-mRNA-1:five_prime_utr;Parent=Msa0522840-mRNA-1
chr3_4	CDS	76163637	76163887	76163637	ID=Msa0522840-mRNA-1:cds;Parent=Msa0522840-mRNA-1
chr3_4	CDS	76164321	76164345	76164321	ID=Msa0522840-mRNA-1:cds;Parent=Msa0522840-mRNA-1
chr3_4	three_prime_UTR	76164346	76164653	76164346	ID=Msa0522840-mRNA-1:three_prime_utr;Parent=Msa0522840-mRNA-1

Gene Sequence	>Msa0522840 ATGGCTTCAAGTTCGAATTGGACCGCAAAGCAGAACAAAAGATTTGAGAATGCGTTGGCAATGTTGGACAAGGACACTCCTGATCGTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGGAAGACTGTTGAAGAAGTGAAAAGACATTATGAGAACCTTGTTGAAGATATTAGGCAGATCGAGGAAGGCCATGTTCCCCTGCCTAATTACACAAATAATGTTGGTTACAATTACATAATGGATCAAGATAAAAGGATGAAGGCTCTAAGTCTCCACTAA
Protein sequence	>Msa0522840 MASSSNWTAKQNKRFENALAMLDKDTPDRWQKVARAVGGKTVEEVKRHYENLVEDIRQIEEGHVPLPNYTNNVGYNYIMDQDKRMKALSLH*