Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384760 | XP_013462164.1 | 96.652 | 448 | 10 | 3 | 1 | 448 | 1 | 443 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384760 | sp|Q1PFD1|BLH11_ARATH | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 7.65e-105 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384760 | A0A072V2D2 | 96.652 | 448 | 10 | 3 | 1 | 448 | 1 | 443 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0384760 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384760 | Msa0479180 | 0.804909 | 1.722382e-49 | -8.615850e-47 |
| Msa0384760 | Msa0479210 | 0.823956 | 1.047351e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384760 | MtrunA17_Chr3g0141931 | 96.652 | 448 | 10 | 3 | 1 | 448 | 1 | 443 | 0.0 | 885 |
| Msa0384760 | MtrunA17_Chr1g0155681 | 50.903 | 277 | 105 | 8 | 173 | 432 | 173 | 435 | 6.95e-78 | 254 |
| Msa0384760 | MtrunA17_Chr3g0141941 | 45.833 | 288 | 120 | 7 | 163 | 432 | 155 | 424 | 1.20e-70 | 232 |
| Msa0384760 | MtrunA17_Chr4g0025521 | 45.936 | 283 | 135 | 6 | 170 | 442 | 217 | 491 | 1.43e-66 | 226 |
| Msa0384760 | MtrunA17_Chr5g0403251 | 43.000 | 300 | 150 | 9 | 136 | 427 | 312 | 598 | 4.01e-65 | 223 |
| Msa0384760 | MtrunA17_Chr7g0267481 | 46.154 | 286 | 121 | 6 | 168 | 432 | 169 | 442 | 7.31e-65 | 220 |
| Msa0384760 | MtrunA17_Chr1g0177751 | 45.418 | 251 | 129 | 4 | 169 | 414 | 160 | 407 | 2.18e-64 | 219 |
| Msa0384760 | MtrunA17_Chr8g0373801 | 44.322 | 273 | 135 | 6 | 170 | 431 | 388 | 654 | 3.76e-63 | 218 |
| Msa0384760 | MtrunA17_Chr4g0008591 | 41.697 | 271 | 127 | 5 | 167 | 431 | 193 | 438 | 1.85e-61 | 210 |
| Msa0384760 | MtrunA17_Chr4g0028701 | 37.681 | 345 | 163 | 7 | 140 | 432 | 205 | 549 | 1.97e-61 | 211 |
| Msa0384760 | MtrunA17_Chr7g0240371 | 42.322 | 267 | 135 | 4 | 167 | 431 | 134 | 383 | 1.58e-59 | 202 |
| Msa0384760 | MtrunA17_Chr2g0327021 | 40.461 | 304 | 138 | 8 | 159 | 432 | 230 | 520 | 1.69e-57 | 199 |
| Msa0384760 | MtrunA17_Chr8g0387321 | 55.307 | 179 | 70 | 5 | 243 | 416 | 259 | 432 | 2.13e-57 | 199 |
| Msa0384760 | MtrunA17_Chr1g0151681 | 36.090 | 266 | 148 | 7 | 167 | 422 | 240 | 493 | 1.33e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384760 | AT1G75430.1 | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 7.78e-106 | 316 |
| Msa0384760 | AT1G75410.1 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.13e-77 | 251 |
| Msa0384760 | AT1G75410.2 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.13e-77 | 251 |
| Msa0384760 | AT1G19700.1 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.94e-77 | 250 |
| Msa0384760 | AT1G19700.3 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.94e-77 | 250 |
| Msa0384760 | AT1G19700.5 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.94e-77 | 250 |
| Msa0384760 | AT1G19700.4 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.94e-77 | 250 |
| Msa0384760 | AT1G19700.2 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.94e-77 | 250 |
| Msa0384760 | AT2G16400.1 | 47.059 | 289 | 129 | 7 | 148 | 433 | 98 | 365 | 8.77e-77 | 248 |
| Msa0384760 | AT4G34610.2 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.05e-70 | 232 |
| Msa0384760 | AT4G34610.4 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.05e-70 | 232 |
| Msa0384760 | AT4G34610.3 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.05e-70 | 232 |
| Msa0384760 | AT4G34610.1 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.05e-70 | 232 |
| Msa0384760 | AT1G75430.2 | 54.460 | 213 | 88 | 6 | 173 | 379 | 19 | 228 | 2.53e-67 | 217 |
| Msa0384760 | AT4G36870.2 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.97e-61 | 213 |
| Msa0384760 | AT4G36870.1 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.97e-61 | 213 |
| Msa0384760 | AT2G35940.3 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 6.97e-58 | 202 |
| Msa0384760 | AT2G35940.1 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 6.97e-58 | 202 |
| Msa0384760 | AT2G35940.2 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 6.97e-58 | 202 |
| Msa0384760 | AT2G23760.2 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 1.99e-57 | 200 |
| Msa0384760 | AT2G23760.1 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 1.99e-57 | 200 |
| Msa0384760 | AT2G23760.3 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 1.99e-57 | 200 |
| Msa0384760 | AT2G27220.1 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 3.50e-57 | 195 |
| Msa0384760 | AT2G27220.3 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 3.50e-57 | 195 |
| Msa0384760 | AT5G02030.1 | 37.377 | 305 | 174 | 3 | 125 | 423 | 125 | 418 | 7.94e-57 | 197 |
| Msa0384760 | AT1G75410.3 | 44.444 | 243 | 123 | 4 | 162 | 400 | 159 | 393 | 2.06e-55 | 189 |
| Msa0384760 | AT2G27220.2 | 42.205 | 263 | 109 | 8 | 176 | 423 | 82 | 316 | 6.75e-55 | 189 |
| Msa0384760 | AT2G27990.1 | 40.769 | 260 | 127 | 4 | 167 | 423 | 259 | 494 | 1.73e-53 | 188 |
| Msa0384760 | AT5G41410.1 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 1.95e-51 | 183 |
| Msa0384760 | AT2G23760.4 | 37.383 | 321 | 119 | 9 | 170 | 421 | 237 | 544 | 7.62e-48 | 174 |
| Msa0384760 | AT4G36870.4 | 42.915 | 247 | 114 | 10 | 170 | 401 | 312 | 546 | 2.79e-45 | 166 |
| Msa0384760 | AT4G36870.3 | 42.449 | 245 | 114 | 10 | 170 | 399 | 312 | 544 | 4.68e-44 | 162 |
| Msa0384760 | AT4G32980.1 | 36.299 | 281 | 147 | 6 | 152 | 422 | 183 | 441 | 1.07e-39 | 149 |
| Msa0384760 | AT4G32980.2 | 36.299 | 281 | 147 | 6 | 152 | 422 | 183 | 441 | 1.07e-39 | 149 |
| Msa0384760 | AT2G27990.2 | 34.259 | 216 | 115 | 4 | 167 | 379 | 259 | 450 | 1.07e-27 | 115 |
Find 79 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3_1:-88065441 | Msa0384760:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3_1:+88065835 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3_1:-88065650 | Msa0384760:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3_1:-88064554 | Msa0384760:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3_1:+88064576 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3_1:+88064394 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3_1:-88065893 | Msa0384760:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3_1:+88064695 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3_1:+88063927 | None:intergenic |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3_1:+88066074 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3_1:-88064435 | Msa0384760:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3_1:+88065588 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.340662 | 3_1:-88065390 | Msa0384760:CDS |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3_1:-88064632 | Msa0384760:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3_1:-88063841 | Msa0384760:exon |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3_1:+88063884 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3_1:+88064238 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3_1:-88063915 | Msa0384760:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3_1:+88064409 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3_1:-88065566 | Msa0384760:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3_1:-88064220 | Msa0384760:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3_1:-88065957 | Msa0384760:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3_1:-88063980 | Msa0384760:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3_1:-88064667 | Msa0384760:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3_1:-88064641 | Msa0384760:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3_1:-88065452 | Msa0384760:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3_1:-88065635 | Msa0384760:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3_1:-88065500 | Msa0384760:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3_1:-88064384 | Msa0384760:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3_1:-88065725 | Msa0384760:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3_1:-88065512 | Msa0384760:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3_1:+88065456 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3_1:+88065809 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3_1:-88064421 | Msa0384760:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3_1:+88065903 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3_1:+88064215 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3_1:+88063867 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3_1:-88064233 | Msa0384760:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3_1:+88064452 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3_1:-88065384 | Msa0384760:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3_1:+88065758 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3_1:-88064707 | Msa0384760:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3_1:+88065770 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3_1:-88065563 | Msa0384760:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3_1:-88065812 | Msa0384760:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3_1:-88063953 | Msa0384760:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3_1:-88063965 | Msa0384760:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3_1:+88065883 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3_1:-88065511 | Msa0384760:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3_1:-88064621 | Msa0384760:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3_1:+88065581 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3_1:+88063871 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3_1:-88065845 | Msa0384760:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3_1:+88064428 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3_1:-88064532 | Msa0384760:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3_1:+88065882 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3_1:+88065840 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3_1:-88065947 | Msa0384760:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3_1:+88063875 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3_1:-88064463 | Msa0384760:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3_1:+88065810 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3_1:-88066079 | Msa0384760:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3_1:-88063959 | Msa0384760:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3_1:-88063964 | Msa0384760:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3_1:+88063870 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3_1:-88064420 | Msa0384760:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3_1:+88065794 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3_1:+88065463 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3_1:+88065651 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3_1:-88066022 | Msa0384760:CDS |
| AACAATATTGGACTAACACA+AGG | 0.620037 | 3_1:-88065989 | Msa0384760:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3_1:-88065771 | Msa0384760:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3_1:-88065911 | Msa0384760:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3_1:-88063847 | Msa0384760:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3_1:-88066073 | Msa0384760:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3_1:-88065460 | Msa0384760:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3_1:-88066076 | Msa0384760:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3_1:-88065774 | Msa0384760:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3_1:-88063850 | Msa0384760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_1:88064615-88064634 | Msa0384760:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_1:88065683-88065702 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_1:88065685-88065704 | Msa0384760:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_1:88065686-88065705 | Msa0384760:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_1:88066040-88066059 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_1:88064615-88064634 | Msa0384760:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_1:88065683-88065702 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_1:88065685-88065704 | Msa0384760:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_1:88065686-88065705 | Msa0384760:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_1:88066040-88066059 | None:intergenic | 15.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_1:88064101-88064120 | Msa0384760:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_1:88064872-88064891 | Msa0384760:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_1:88065035-88065054 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_1:88065036-88065055 | None:intergenic | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3_1:88065504-88065523 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_1:88065562-88065581 | Msa0384760:CDS | 20.0% |
| !!! | TTTTTCGAAGTTATTTATGA+TGG | - | chr3_1:88065820-88065839 | Msa0384760:CDS | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_1:88064101-88064120 | Msa0384760:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_1:88064872-88064891 | Msa0384760:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_1:88065035-88065054 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_1:88065036-88065055 | None:intergenic | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3_1:88065504-88065523 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_1:88065562-88065581 | Msa0384760:CDS | 20.0% |
| !!! | TTTTTCGAAGTTATTTATGA+TGG | - | chr3_1:88065820-88065839 | Msa0384760:CDS | 20.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_1:88063748-88063767 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_1:88063840-88063859 | Msa0384760:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_1:88064104-88064123 | Msa0384760:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_1:88064110-88064129 | Msa0384760:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_1:88064727-88064746 | Msa0384760:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_1:88064728-88064747 | Msa0384760:intron | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_1:88064916-88064935 | Msa0384760:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_1:88064991-88065010 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_1:88064992-88065011 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_1:88065098-88065117 | Msa0384760:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_1:88065277-88065296 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_1:88065278-88065297 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_1:88065309-88065328 | Msa0384760:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_1:88065318-88065337 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_1:88065557-88065576 | None:intergenic | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_1:88065844-88065863 | Msa0384760:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_1:88065877-88065896 | Msa0384760:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_1:88065917-88065936 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_1:88065976-88065995 | Msa0384760:CDS | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_1:88066042-88066061 | Msa0384760:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_1:88066052-88066071 | Msa0384760:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_1:88066087-88066106 | None:intergenic | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_1:88063748-88063767 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_1:88063840-88063859 | Msa0384760:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_1:88064104-88064123 | Msa0384760:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_1:88064110-88064129 | Msa0384760:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_1:88064727-88064746 | Msa0384760:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_1:88064728-88064747 | Msa0384760:intron | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_1:88064916-88064935 | Msa0384760:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_1:88064991-88065010 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_1:88064992-88065011 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_1:88065098-88065117 | Msa0384760:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_1:88065277-88065296 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_1:88065278-88065297 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_1:88065309-88065328 | Msa0384760:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_1:88065318-88065337 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_1:88065557-88065576 | None:intergenic | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_1:88065844-88065863 | Msa0384760:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_1:88065877-88065896 | Msa0384760:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_1:88065917-88065936 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_1:88065976-88065995 | Msa0384760:CDS | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_1:88066042-88066061 | Msa0384760:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_1:88066052-88066071 | Msa0384760:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_1:88066087-88066106 | None:intergenic | 25.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_1:88063742-88063761 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_1:88063749-88063768 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_1:88063819-88063838 | Msa0384760:three_prime_UTR | 30.0% | |
| AACAATATTGGACTAACACA+AGG | - | chr3_1:88063852-88063871 | Msa0384760:CDS | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_1:88064004-88064023 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_1:88064009-88064028 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_1:88064193-88064212 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_1:88064219-88064238 | Msa0384760:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_1:88064748-88064767 | Msa0384760:intron | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_1:88064830-88064849 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_1:88064838-88064857 | Msa0384760:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_1:88065007-88065026 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_1:88065022-88065041 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_1:88065149-88065168 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_1:88065168-88065187 | Msa0384760:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_1:88065173-88065192 | Msa0384760:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_1:88065174-88065193 | Msa0384760:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_1:88065268-88065287 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_1:88065287-88065306 | Msa0384760:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_1:88065606-88065625 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_1:88065637-88065656 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_1:88065702-88065721 | Msa0384760:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_1:88065876-88065895 | Msa0384760:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_1:88065926-88065945 | Msa0384760:CDS | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_1:88065977-88065996 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_1:88065975-88065994 | Msa0384760:CDS | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_1:88063742-88063761 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_1:88063749-88063768 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_1:88063819-88063838 | Msa0384760:three_prime_UTR | 30.0% | |
| AACAATATTGGACTAACACA+AGG | - | chr3_1:88063852-88063871 | Msa0384760:CDS | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_1:88064004-88064023 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_1:88064009-88064028 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_1:88064193-88064212 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_1:88064219-88064238 | Msa0384760:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_1:88064748-88064767 | Msa0384760:intron | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_1:88064830-88064849 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_1:88064838-88064857 | Msa0384760:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_1:88065007-88065026 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_1:88065022-88065041 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_1:88065149-88065168 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_1:88065168-88065187 | Msa0384760:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_1:88065173-88065192 | Msa0384760:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_1:88065174-88065193 | Msa0384760:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_1:88065268-88065287 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_1:88065287-88065306 | Msa0384760:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_1:88065606-88065625 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_1:88065637-88065656 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_1:88065702-88065721 | Msa0384760:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_1:88065876-88065895 | Msa0384760:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_1:88065926-88065945 | Msa0384760:CDS | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_1:88065977-88065996 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_1:88065975-88065994 | Msa0384760:CDS | 30.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_1:88063894-88063913 | Msa0384760:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_1:88063930-88063949 | Msa0384760:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_1:88063996-88064015 | Msa0384760:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_1:88064113-88064132 | Msa0384760:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_1:88064191-88064210 | Msa0384760:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_1:88064206-88064225 | Msa0384760:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_1:88064218-88064237 | Msa0384760:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_1:88064275-88064294 | Msa0384760:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_1:88064329-88064348 | Msa0384760:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_1:88064330-88064349 | Msa0384760:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_1:88064400-88064419 | Msa0384760:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_1:88064451-88064470 | Msa0384760:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_1:88064461-88064480 | Msa0384760:CDS | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_1:88065104-88065123 | Msa0384760:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_1:88065105-88065124 | Msa0384760:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_1:88065134-88065153 | Msa0384760:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_1:88065392-88065411 | None:intergenic | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3_1:88065406-88065425 | Msa0384760:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_1:88065421-88065440 | Msa0384760:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_1:88065450-88065469 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_1:88065638-88065657 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_1:88065652-88065671 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_1:88065659-88065678 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_1:88065850-88065869 | Msa0384760:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_1:88065973-88065992 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_1:88065974-88065993 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_1:88066078-88066097 | None:intergenic | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_1:88063894-88063913 | Msa0384760:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_1:88063930-88063949 | Msa0384760:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_1:88063996-88064015 | Msa0384760:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_1:88064113-88064132 | Msa0384760:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_1:88064191-88064210 | Msa0384760:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_1:88064206-88064225 | Msa0384760:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_1:88064218-88064237 | Msa0384760:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_1:88064275-88064294 | Msa0384760:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_1:88064329-88064348 | Msa0384760:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_1:88064330-88064349 | Msa0384760:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_1:88064400-88064419 | Msa0384760:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_1:88064451-88064470 | Msa0384760:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_1:88064461-88064480 | Msa0384760:CDS | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_1:88065104-88065123 | Msa0384760:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_1:88065105-88065124 | Msa0384760:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_1:88065134-88065153 | Msa0384760:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_1:88065392-88065411 | None:intergenic | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3_1:88065406-88065425 | Msa0384760:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_1:88065421-88065440 | Msa0384760:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_1:88065450-88065469 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_1:88065638-88065657 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_1:88065652-88065671 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_1:88065659-88065678 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_1:88065850-88065869 | Msa0384760:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_1:88065973-88065992 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_1:88065974-88065993 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_1:88066078-88066097 | None:intergenic | 35.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_1:88063762-88063781 | Msa0384760:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_1:88063765-88063784 | Msa0384760:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_1:88063884-88063903 | Msa0384760:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_1:88063948-88063967 | Msa0384760:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_1:88063961-88063980 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_1:88064256-88064275 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_1:88064263-88064282 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_1:88064278-88064297 | Msa0384760:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_1:88064341-88064360 | Msa0384760:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_1:88064389-88064408 | Msa0384760:CDS | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_1:88064457-88064476 | Msa0384760:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_1:88065200-88065219 | Msa0384760:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_1:88065378-88065397 | Msa0384760:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_1:88065420-88065439 | Msa0384760:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_1:88065435-88065454 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_1:88065608-88065627 | Msa0384760:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_1:88065861-88065880 | Msa0384760:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_1:88065882-88065901 | Msa0384760:CDS | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_1:88066079-88066098 | None:intergenic | 40.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_1:88063762-88063781 | Msa0384760:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_1:88063765-88063784 | Msa0384760:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_1:88063884-88063903 | Msa0384760:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_1:88063948-88063967 | Msa0384760:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_1:88063961-88063980 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_1:88064256-88064275 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_1:88064263-88064282 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_1:88064278-88064297 | Msa0384760:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_1:88064341-88064360 | Msa0384760:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_1:88064389-88064408 | Msa0384760:CDS | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_1:88064457-88064476 | Msa0384760:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_1:88065200-88065219 | Msa0384760:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_1:88065378-88065397 | Msa0384760:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_1:88065420-88065439 | Msa0384760:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_1:88065435-88065454 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_1:88065608-88065627 | Msa0384760:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_1:88065861-88065880 | Msa0384760:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_1:88065882-88065901 | Msa0384760:CDS | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_1:88066079-88066098 | None:intergenic | 40.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_1:88063770-88063789 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_1:88063768-88063787 | Msa0384760:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_1:88063962-88063981 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_1:88064029-88064048 | Msa0384760:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_1:88064034-88064053 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_1:88064035-88064054 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_1:88064067-88064086 | Msa0384760:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_1:88064074-88064093 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_1:88064086-88064105 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_1:88064116-88064135 | Msa0384760:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_1:88064388-88064407 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_1:88064824-88064843 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_1:88065209-88065228 | Msa0384760:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_1:88065416-88065435 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_1:88065457-88065476 | Msa0384760:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_1:88065621-88065640 | Msa0384760:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_1:88065629-88065648 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_1:88065754-88065773 | Msa0384760:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_1:88065888-88065907 | Msa0384760:CDS | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_1:88065969-88065988 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_1:88066000-88066019 | Msa0384760:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_1:88066072-88066091 | Msa0384760:CDS | 45.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_1:88063770-88063789 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_1:88063768-88063787 | Msa0384760:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_1:88063962-88063981 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_1:88064029-88064048 | Msa0384760:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_1:88064034-88064053 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_1:88064035-88064054 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_1:88064067-88064086 | Msa0384760:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_1:88064074-88064093 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_1:88064086-88064105 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_1:88064116-88064135 | Msa0384760:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_1:88064388-88064407 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_1:88064824-88064843 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_1:88065209-88065228 | Msa0384760:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_1:88065416-88065435 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_1:88065457-88065476 | Msa0384760:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_1:88065621-88065640 | Msa0384760:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_1:88065629-88065648 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_1:88065754-88065773 | Msa0384760:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_1:88065888-88065907 | Msa0384760:CDS | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_1:88065969-88065988 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_1:88066000-88066019 | Msa0384760:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_1:88066072-88066091 | Msa0384760:CDS | 45.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_1:88063941-88063960 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_1:88064050-88064069 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_1:88064070-88064089 | Msa0384760:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_1:88064131-88064150 | Msa0384760:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_1:88064381-88064400 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_1:88064381-88064400 | Msa0384760:CDS | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_1:88065220-88065239 | Msa0384760:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_1:88065991-88066010 | Msa0384760:CDS | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_1:88065994-88066013 | Msa0384760:CDS | 50.0% | |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_1:88063941-88063960 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_1:88064050-88064069 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_1:88064070-88064089 | Msa0384760:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_1:88064131-88064150 | Msa0384760:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_1:88064381-88064400 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_1:88064381-88064400 | Msa0384760:CDS | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_1:88065220-88065239 | Msa0384760:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_1:88065991-88066010 | Msa0384760:CDS | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_1:88065994-88066013 | Msa0384760:CDS | 50.0% | |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_1:88065960-88065979 | None:intergenic | 60.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_1:88065960-88065979 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88063725 | 88066138 | 88063725 | ID=Msa0384760;Name=Msa0384760 |
| chr3_1 | mRNA | 88063725 | 88066138 | 88063725 | ID=Msa0384760-mRNA-1;Parent=Msa0384760;Name=Msa0384760-mRNA-1;_AED=0.33;_eAED=0.33;_QI=1|1|0.75|1|1|1|4|117|448 |
| chr3_1 | exon | 88063725 | 88063991 | 88063725 | ID=Msa0384760-mRNA-1:exon:23690;Parent=Msa0384760-mRNA-1 |
| chr3_1 | exon | 88064204 | 88064264 | 88064204 | ID=Msa0384760-mRNA-1:exon:23689;Parent=Msa0384760-mRNA-1 |
| chr3_1 | exon | 88064361 | 88064743 | 88064361 | ID=Msa0384760-mRNA-1:exon:23688;Parent=Msa0384760-mRNA-1 |
| chr3_1 | exon | 88065385 | 88066138 | 88065385 | ID=Msa0384760-mRNA-1:exon:23687;Parent=Msa0384760-mRNA-1 |
| chr3_1 | five_prime_UTR | 88066138 | 88066138 | 88066138 | ID=Msa0384760-mRNA-1:five_prime_utr;Parent=Msa0384760-mRNA-1 |
| chr3_1 | CDS | 88065385 | 88066137 | 88065385 | ID=Msa0384760-mRNA-1:cds;Parent=Msa0384760-mRNA-1 |
| chr3_1 | CDS | 88064361 | 88064743 | 88064361 | ID=Msa0384760-mRNA-1:cds;Parent=Msa0384760-mRNA-1 |
| chr3_1 | CDS | 88064204 | 88064264 | 88064204 | ID=Msa0384760-mRNA-1:cds;Parent=Msa0384760-mRNA-1 |
| chr3_1 | CDS | 88063842 | 88063991 | 88063842 | ID=Msa0384760-mRNA-1:cds;Parent=Msa0384760-mRNA-1 |
| chr3_1 | three_prime_UTR | 88063725 | 88063841 | 88063725 | ID=Msa0384760-mRNA-1:three_prime_utr;Parent=Msa0384760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
