Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479180 | XP_013462164.1 | 82.366 | 448 | 26 | 5 | 1 | 401 | 2 | 443 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479180 | sp|Q1PFD1|BLH11_ARATH | 51.698 | 265 | 104 | 7 | 141 | 384 | 19 | 280 | 1.43e-79 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479180 | A0A072V2D2 | 82.366 | 448 | 26 | 5 | 1 | 401 | 2 | 443 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0479180 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384760 | Msa0479180 | 0.804909 | 1.722382e-49 | -8.615850e-47 |
| Msa0479180 | Msa0479210 | 0.968760 | 3.874247e-129 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479180 | MtrunA17_Chr3g0141931 | 82.366 | 448 | 26 | 5 | 1 | 401 | 2 | 443 | 0.0 | 706 |
| Msa0479180 | MtrunA17_Chr1g0155681 | 43.431 | 274 | 115 | 9 | 141 | 385 | 173 | 435 | 2.72e-54 | 189 |
| Msa0479180 | MtrunA17_Chr3g0141941 | 38.947 | 285 | 129 | 9 | 131 | 385 | 155 | 424 | 8.64e-48 | 170 |
| Msa0479180 | MtrunA17_Chr4g0025521 | 40.214 | 281 | 139 | 7 | 138 | 395 | 217 | 491 | 3.70e-47 | 171 |
| Msa0479180 | MtrunA17_Chr5g0403251 | 38.462 | 273 | 140 | 9 | 133 | 380 | 329 | 598 | 4.39e-46 | 169 |
| Msa0479180 | MtrunA17_Chr7g0267481 | 40.141 | 284 | 126 | 7 | 136 | 385 | 169 | 442 | 5.50e-45 | 164 |
| Msa0479180 | MtrunA17_Chr1g0177751 | 38.554 | 249 | 134 | 5 | 137 | 367 | 160 | 407 | 1.86e-44 | 163 |
| Msa0479180 | MtrunA17_Chr8g0373801 | 37.453 | 267 | 139 | 7 | 138 | 380 | 388 | 650 | 3.36e-43 | 161 |
| Msa0479180 | MtrunA17_Chr7g0240371 | 36.641 | 262 | 142 | 6 | 135 | 384 | 134 | 383 | 4.08e-40 | 149 |
| Msa0479180 | MtrunA17_Chr4g0008591 | 35.955 | 267 | 133 | 7 | 135 | 384 | 193 | 438 | 5.23e-40 | 150 |
| Msa0479180 | MtrunA17_Chr4g0028701 | 31.392 | 309 | 153 | 5 | 135 | 385 | 242 | 549 | 5.10e-39 | 148 |
| Msa0479180 | MtrunA17_Chr8g0387321 | 45.198 | 177 | 76 | 6 | 211 | 369 | 259 | 432 | 3.32e-38 | 145 |
| Msa0479180 | MtrunA17_Chr2g0327021 | 34.426 | 305 | 140 | 10 | 127 | 385 | 230 | 520 | 1.26e-35 | 138 |
| Msa0479180 | MtrunA17_Chr1g0151681 | 30.153 | 262 | 154 | 8 | 135 | 375 | 240 | 493 | 3.70e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479180 | AT1G75430.1 | 51.698 | 265 | 104 | 7 | 141 | 384 | 19 | 280 | 1.46e-80 | 249 |
| Msa0479180 | AT2G16400.1 | 41.463 | 287 | 133 | 8 | 116 | 386 | 98 | 365 | 6.82e-56 | 191 |
| Msa0479180 | AT1G75410.1 | 42.222 | 270 | 133 | 5 | 130 | 382 | 159 | 422 | 3.54e-55 | 190 |
| Msa0479180 | AT1G75410.2 | 42.222 | 270 | 133 | 5 | 130 | 382 | 159 | 422 | 3.54e-55 | 190 |
| Msa0479180 | AT1G19700.1 | 42.960 | 277 | 118 | 7 | 135 | 382 | 162 | 427 | 8.77e-55 | 189 |
| Msa0479180 | AT1G19700.3 | 42.960 | 277 | 118 | 7 | 135 | 382 | 162 | 427 | 8.77e-55 | 189 |
| Msa0479180 | AT1G19700.5 | 42.960 | 277 | 118 | 7 | 135 | 382 | 162 | 427 | 8.77e-55 | 189 |
| Msa0479180 | AT1G19700.4 | 42.960 | 277 | 118 | 7 | 135 | 382 | 162 | 427 | 8.77e-55 | 189 |
| Msa0479180 | AT1G19700.2 | 42.960 | 277 | 118 | 7 | 135 | 382 | 162 | 427 | 8.77e-55 | 189 |
| Msa0479180 | AT4G34610.2 | 42.279 | 272 | 123 | 10 | 138 | 390 | 140 | 396 | 8.17e-49 | 173 |
| Msa0479180 | AT4G34610.4 | 42.279 | 272 | 123 | 10 | 138 | 390 | 140 | 396 | 8.17e-49 | 173 |
| Msa0479180 | AT4G34610.3 | 42.279 | 272 | 123 | 10 | 138 | 390 | 140 | 396 | 8.17e-49 | 173 |
| Msa0479180 | AT4G34610.1 | 42.279 | 272 | 123 | 10 | 138 | 390 | 140 | 396 | 8.17e-49 | 173 |
| Msa0479180 | AT1G75430.2 | 49.724 | 181 | 83 | 5 | 141 | 316 | 19 | 196 | 9.42e-46 | 159 |
| Msa0479180 | AT4G36870.2 | 39.098 | 266 | 124 | 11 | 138 | 375 | 312 | 567 | 2.26e-41 | 155 |
| Msa0479180 | AT4G36870.1 | 39.098 | 266 | 124 | 11 | 138 | 375 | 312 | 567 | 2.26e-41 | 155 |
| Msa0479180 | AT2G23760.2 | 37.828 | 267 | 125 | 10 | 138 | 374 | 237 | 492 | 6.88e-38 | 145 |
| Msa0479180 | AT2G23760.1 | 37.828 | 267 | 125 | 10 | 138 | 374 | 237 | 492 | 6.88e-38 | 145 |
| Msa0479180 | AT2G23760.3 | 37.828 | 267 | 125 | 10 | 138 | 374 | 237 | 492 | 6.88e-38 | 145 |
| Msa0479180 | AT2G35940.3 | 35.714 | 280 | 129 | 8 | 131 | 367 | 175 | 446 | 1.24e-37 | 144 |
| Msa0479180 | AT2G35940.1 | 35.714 | 280 | 129 | 8 | 131 | 367 | 175 | 446 | 1.24e-37 | 144 |
| Msa0479180 | AT2G35940.2 | 35.714 | 280 | 129 | 8 | 131 | 367 | 175 | 446 | 1.24e-37 | 144 |
| Msa0479180 | AT2G27220.1 | 37.872 | 235 | 126 | 5 | 144 | 376 | 82 | 298 | 1.72e-37 | 141 |
| Msa0479180 | AT2G27220.3 | 37.872 | 235 | 126 | 5 | 144 | 376 | 82 | 298 | 1.72e-37 | 141 |
| Msa0479180 | AT2G27220.2 | 37.349 | 249 | 126 | 9 | 144 | 376 | 82 | 316 | 1.40e-35 | 136 |
| Msa0479180 | AT5G02030.1 | 31.615 | 291 | 167 | 5 | 107 | 376 | 139 | 418 | 4.96e-35 | 136 |
| Msa0479180 | AT1G75410.3 | 36.515 | 241 | 130 | 5 | 130 | 353 | 159 | 393 | 3.99e-33 | 128 |
| Msa0479180 | AT5G41410.1 | 34.615 | 286 | 142 | 8 | 139 | 386 | 194 | 472 | 6.73e-33 | 130 |
| Msa0479180 | AT2G27990.1 | 33.730 | 252 | 141 | 6 | 135 | 376 | 259 | 494 | 9.37e-32 | 127 |
| Msa0479180 | AT4G36870.4 | 35.102 | 245 | 121 | 11 | 138 | 354 | 312 | 546 | 2.64e-25 | 108 |
| Msa0479180 | AT4G36870.3 | 34.568 | 243 | 121 | 11 | 138 | 352 | 312 | 544 | 3.19e-24 | 105 |
| Msa0479180 | AT4G32980.1 | 37.278 | 169 | 96 | 4 | 213 | 375 | 277 | 441 | 5.29e-22 | 98.2 |
| Msa0479180 | AT4G32980.2 | 37.278 | 169 | 96 | 4 | 213 | 375 | 277 | 441 | 5.29e-22 | 98.2 |
| Msa0479180 | AT2G23760.4 | 76.190 | 42 | 10 | 0 | 333 | 374 | 503 | 544 | 3.75e-16 | 80.9 |
| Msa0479180 | AT2G23760.4 | 37.671 | 146 | 72 | 3 | 138 | 273 | 237 | 373 | 7.92e-16 | 79.7 |
| Msa0479180 | AT2G27990.2 | 30.986 | 142 | 82 | 3 | 135 | 273 | 259 | 387 | 5.04e-12 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3_3:-84058596 | Msa0479180:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3_3:+84058993 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3_3:-84058805 | Msa0479180:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3_3:-84057764 | Msa0479180:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3_3:+84057786 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3_3:+84057605 | None:intergenic |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3_3:+84057905 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3_3:+84057139 | None:intergenic |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3_3:+84059232 | None:intergenic |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3_3:+84058743 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.340662 | 3_3:-84058545 | Msa0479180:CDS |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3_3:-84057842 | Msa0479180:CDS |
| ATTCAAACCAACGACAAGTT+TGG | 0.347963 | 3_3:-84057646 | Msa0479180:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3_3:-84057053 | Msa0479180:exon |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3_3:+84057096 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3_3:+84057450 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3_3:-84057127 | Msa0479180:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3_3:+84057620 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3_3:-84058721 | Msa0479180:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3_3:-84057432 | Msa0479180:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3_3:-84057192 | Msa0479180:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3_3:-84057877 | Msa0479180:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3_3:-84057851 | Msa0479180:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3_3:-84058607 | Msa0479180:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3_3:-84058790 | Msa0479180:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3_3:-84058655 | Msa0479180:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3_3:-84058883 | Msa0479180:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3_3:-84058667 | Msa0479180:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3_3:+84058611 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3_3:+84058967 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3_3:-84057632 | Msa0479180:CDS |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3_3:+84057427 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3_3:+84057079 | None:intergenic |
| TTTGAATGACACCAAGTTGT+TGG | 0.498928 | 3_3:+84057662 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3_3:-84057445 | Msa0479180:CDS |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3_3:-84058539 | Msa0479180:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3_3:+84058916 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3_3:-84057917 | Msa0479180:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3_3:+84058928 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3_3:-84058718 | Msa0479180:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3_3:-84058970 | Msa0479180:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3_3:-84057165 | Msa0479180:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3_3:-84057177 | Msa0479180:CDS |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3_3:-84058666 | Msa0479180:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3_3:-84057831 | Msa0479180:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3_3:+84058736 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3_3:+84057083 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3_3:-84059003 | Msa0479180:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3_3:+84057639 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3_3:-84057742 | Msa0479180:CDS |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3_3:+84058998 | None:intergenic |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3_3:+84057087 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3_3:-84057673 | Msa0479180:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3_3:+84058968 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3_3:-84059237 | Msa0479180:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3_3:-84057171 | Msa0479180:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3_3:-84057176 | Msa0479180:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3_3:+84057082 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3_3:-84057631 | Msa0479180:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3_3:+84058952 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3_3:+84058618 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3_3:+84058806 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3_3:-84059180 | Msa0479180:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3_3:-84059147 | Msa0479180:intron |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3_3:-84058929 | Msa0479180:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3_3:-84057059 | Msa0479180:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3_3:-84059231 | Msa0479180:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3_3:-84058615 | Msa0479180:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3_3:-84059234 | Msa0479180:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3_3:-84058932 | Msa0479180:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3_3:-84057062 | Msa0479180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_3:84057828-84057847 | Msa0479180:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_3:84058839-84058858 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_3:84058841-84058860 | Msa0479180:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_3:84058842-84058861 | Msa0479180:CDS | 15.0% |
| !!! | TTTTTCAAAGTTATTTATGA+TGG | - | chr3_3:84058976-84058995 | Msa0479180:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_3:84059196-84059215 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_3:84057828-84057847 | Msa0479180:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_3:84058839-84058858 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_3:84058841-84058860 | Msa0479180:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_3:84058842-84058861 | Msa0479180:CDS | 15.0% |
| !!! | TTTTTCAAAGTTATTTATGA+TGG | - | chr3_3:84058976-84058995 | Msa0479180:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_3:84059196-84059215 | None:intergenic | 15.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_3:84057311-84057330 | Msa0479180:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_3:84058029-84058048 | Msa0479180:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_3:84058193-84058212 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_3:84058194-84058213 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_3:84058718-84058737 | Msa0479180:CDS | 20.0% |
| !! | ATGGTAAATTTCATTAACTT+GGG | - | chr3_3:84058929-84058948 | Msa0479180:CDS | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_3:84057311-84057330 | Msa0479180:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_3:84058029-84058048 | Msa0479180:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_3:84058193-84058212 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_3:84058194-84058213 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_3:84058718-84058737 | Msa0479180:CDS | 20.0% |
| !! | ATGGTAAATTTCATTAACTT+GGG | - | chr3_3:84058929-84058948 | Msa0479180:CDS | 20.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_3:84056958-84056977 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_3:84057050-84057069 | Msa0479180:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_3:84057314-84057333 | Msa0479180:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_3:84057320-84057339 | Msa0479180:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_3:84057884-84057903 | Msa0479180:CDS | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_3:84057885-84057904 | Msa0479180:CDS | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_3:84058073-84058092 | Msa0479180:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_3:84058149-84058168 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_3:84058150-84058169 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_3:84058256-84058275 | Msa0479180:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_3:84058435-84058454 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_3:84058436-84058455 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_3:84058467-84058486 | Msa0479180:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_3:84058476-84058495 | None:intergenic | 25.0% |
| !!! | CAGATTTTGATATAAGCTTA+CGG | + | chr3_3:84058661-84058680 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_3:84058713-84058732 | None:intergenic | 25.0% |
| ! | GATGGTAAATTTCATTAACT+TGG | - | chr3_3:84058928-84058947 | Msa0479180:CDS | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_3:84059000-84059019 | Msa0479180:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_3:84059033-84059052 | Msa0479180:intron | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_3:84059073-84059092 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_3:84059132-84059151 | Msa0479180:intron | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_3:84059198-84059217 | Msa0479180:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_3:84059208-84059227 | Msa0479180:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_3:84059243-84059262 | None:intergenic | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_3:84056958-84056977 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_3:84057050-84057069 | Msa0479180:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_3:84057314-84057333 | Msa0479180:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_3:84057320-84057339 | Msa0479180:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_3:84057884-84057903 | Msa0479180:CDS | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_3:84057885-84057904 | Msa0479180:CDS | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_3:84058073-84058092 | Msa0479180:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_3:84058149-84058168 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_3:84058150-84058169 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_3:84058256-84058275 | Msa0479180:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_3:84058435-84058454 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_3:84058436-84058455 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_3:84058467-84058486 | Msa0479180:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_3:84058476-84058495 | None:intergenic | 25.0% |
| !!! | CAGATTTTGATATAAGCTTA+CGG | + | chr3_3:84058661-84058680 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_3:84058713-84058732 | None:intergenic | 25.0% |
| ! | GATGGTAAATTTCATTAACT+TGG | - | chr3_3:84058928-84058947 | Msa0479180:CDS | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_3:84059000-84059019 | Msa0479180:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_3:84059033-84059052 | Msa0479180:intron | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_3:84059073-84059092 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_3:84059132-84059151 | Msa0479180:intron | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_3:84059198-84059217 | Msa0479180:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_3:84059208-84059227 | Msa0479180:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_3:84059243-84059262 | None:intergenic | 25.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_3:84056952-84056971 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_3:84056959-84056978 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_3:84057029-84057048 | Msa0479180:three_prime_UTR | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_3:84057214-84057233 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_3:84057219-84057238 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_3:84057406-84057425 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_3:84057432-84057451 | Msa0479180:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_3:84057905-84057924 | Msa0479180:CDS | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_3:84057987-84058006 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_3:84057995-84058014 | Msa0479180:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_3:84058165-84058184 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_3:84058180-84058199 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_3:84058307-84058326 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_3:84058326-84058345 | Msa0479180:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_3:84058331-84058350 | Msa0479180:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_3:84058332-84058351 | Msa0479180:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_3:84058426-84058445 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_3:84058445-84058464 | Msa0479180:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_3:84058762-84058781 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_3:84058793-84058812 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_3:84058858-84058877 | Msa0479180:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_3:84059032-84059051 | Msa0479180:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_3:84059082-84059101 | Msa0479180:intron | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_3:84059133-84059152 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_3:84059131-84059150 | Msa0479180:intron | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_3:84056952-84056971 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_3:84056959-84056978 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_3:84057029-84057048 | Msa0479180:three_prime_UTR | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_3:84057214-84057233 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_3:84057219-84057238 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_3:84057406-84057425 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_3:84057432-84057451 | Msa0479180:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_3:84057905-84057924 | Msa0479180:CDS | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_3:84057987-84058006 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_3:84057995-84058014 | Msa0479180:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_3:84058165-84058184 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_3:84058180-84058199 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_3:84058307-84058326 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_3:84058326-84058345 | Msa0479180:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_3:84058331-84058350 | Msa0479180:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_3:84058332-84058351 | Msa0479180:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_3:84058426-84058445 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_3:84058445-84058464 | Msa0479180:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_3:84058762-84058781 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_3:84058793-84058812 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_3:84058858-84058877 | Msa0479180:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_3:84059032-84059051 | Msa0479180:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_3:84059082-84059101 | Msa0479180:intron | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_3:84059133-84059152 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_3:84059131-84059150 | Msa0479180:intron | 30.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3_3:84057062-84057081 | Msa0479180:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_3:84057104-84057123 | Msa0479180:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_3:84057140-84057159 | Msa0479180:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_3:84057206-84057225 | Msa0479180:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_3:84057323-84057342 | Msa0479180:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_3:84057404-84057423 | Msa0479180:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_3:84057419-84057438 | Msa0479180:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_3:84057431-84057450 | Msa0479180:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_3:84057488-84057507 | Msa0479180:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_3:84057542-84057561 | Msa0479180:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_3:84057543-84057562 | Msa0479180:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_3:84057613-84057632 | Msa0479180:intron | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_3:84057664-84057683 | Msa0479180:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_3:84057674-84057693 | Msa0479180:CDS | 35.0% | |
| GTTAGTAATTAGTTGGGAGT+TGG | + | chr3_3:84058143-84058162 | None:intergenic | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_3:84058262-84058281 | Msa0479180:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_3:84058263-84058282 | Msa0479180:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_3:84058292-84058311 | Msa0479180:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_3:84058550-84058569 | None:intergenic | 35.0% | |
| ATTCAAACCAACGACAAGTT+TGG | - | chr3_3:84058563-84058582 | Msa0479180:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_3:84058578-84058597 | Msa0479180:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_3:84058607-84058626 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_3:84058794-84058813 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_3:84058808-84058827 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_3:84058815-84058834 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_3:84059006-84059025 | Msa0479180:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_3:84059129-84059148 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_3:84059130-84059149 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_3:84059234-84059253 | None:intergenic | 35.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3_3:84057062-84057081 | Msa0479180:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_3:84057104-84057123 | Msa0479180:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_3:84057140-84057159 | Msa0479180:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_3:84057206-84057225 | Msa0479180:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_3:84057323-84057342 | Msa0479180:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_3:84057404-84057423 | Msa0479180:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_3:84057419-84057438 | Msa0479180:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_3:84057431-84057450 | Msa0479180:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_3:84057488-84057507 | Msa0479180:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_3:84057542-84057561 | Msa0479180:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_3:84057543-84057562 | Msa0479180:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_3:84057613-84057632 | Msa0479180:intron | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_3:84057664-84057683 | Msa0479180:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_3:84057674-84057693 | Msa0479180:CDS | 35.0% | |
| GTTAGTAATTAGTTGGGAGT+TGG | + | chr3_3:84058143-84058162 | None:intergenic | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_3:84058262-84058281 | Msa0479180:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_3:84058263-84058282 | Msa0479180:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_3:84058292-84058311 | Msa0479180:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_3:84058550-84058569 | None:intergenic | 35.0% | |
| ATTCAAACCAACGACAAGTT+TGG | - | chr3_3:84058563-84058582 | Msa0479180:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_3:84058578-84058597 | Msa0479180:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_3:84058607-84058626 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_3:84058794-84058813 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_3:84058808-84058827 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_3:84058815-84058834 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_3:84059006-84059025 | Msa0479180:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_3:84059129-84059148 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_3:84059130-84059149 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_3:84059234-84059253 | None:intergenic | 35.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_3:84056972-84056991 | Msa0479180:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_3:84056975-84056994 | Msa0479180:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_3:84057094-84057113 | Msa0479180:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_3:84057158-84057177 | Msa0479180:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_3:84057171-84057190 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_3:84057469-84057488 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_3:84057476-84057495 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_3:84057491-84057510 | Msa0479180:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_3:84057554-84057573 | Msa0479180:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_3:84057602-84057621 | Msa0479180:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_3:84057670-84057689 | Msa0479180:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_3:84058358-84058377 | Msa0479180:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_3:84058536-84058555 | Msa0479180:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_3:84058577-84058596 | Msa0479180:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_3:84058592-84058611 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_3:84058764-84058783 | Msa0479180:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_3:84059017-84059036 | Msa0479180:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_3:84059038-84059057 | Msa0479180:intron | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_3:84059235-84059254 | None:intergenic | 40.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_3:84056972-84056991 | Msa0479180:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_3:84056975-84056994 | Msa0479180:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_3:84057094-84057113 | Msa0479180:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_3:84057158-84057177 | Msa0479180:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_3:84057171-84057190 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_3:84057469-84057488 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_3:84057476-84057495 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_3:84057491-84057510 | Msa0479180:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_3:84057554-84057573 | Msa0479180:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_3:84057602-84057621 | Msa0479180:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_3:84057670-84057689 | Msa0479180:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_3:84058358-84058377 | Msa0479180:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_3:84058536-84058555 | Msa0479180:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_3:84058577-84058596 | Msa0479180:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_3:84058592-84058611 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_3:84058764-84058783 | Msa0479180:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_3:84059017-84059036 | Msa0479180:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_3:84059038-84059057 | Msa0479180:intron | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_3:84059235-84059254 | None:intergenic | 40.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_3:84056980-84056999 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_3:84056978-84056997 | Msa0479180:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_3:84057172-84057191 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_3:84057239-84057258 | Msa0479180:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_3:84057244-84057263 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_3:84057245-84057264 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_3:84057277-84057296 | Msa0479180:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_3:84057284-84057303 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_3:84057296-84057315 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_3:84057326-84057345 | Msa0479180:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_3:84057601-84057620 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_3:84057981-84058000 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_3:84058367-84058386 | Msa0479180:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_3:84058573-84058592 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_3:84058614-84058633 | Msa0479180:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_3:84058777-84058796 | Msa0479180:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_3:84058785-84058804 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_3:84058910-84058929 | Msa0479180:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_3:84059044-84059063 | Msa0479180:intron | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_3:84059125-84059144 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_3:84059156-84059175 | Msa0479180:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_3:84059228-84059247 | Msa0479180:CDS | 45.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_3:84056980-84056999 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_3:84056978-84056997 | Msa0479180:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_3:84057172-84057191 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_3:84057239-84057258 | Msa0479180:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_3:84057244-84057263 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_3:84057245-84057264 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_3:84057277-84057296 | Msa0479180:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_3:84057284-84057303 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_3:84057296-84057315 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_3:84057326-84057345 | Msa0479180:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_3:84057601-84057620 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_3:84057981-84058000 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_3:84058367-84058386 | Msa0479180:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_3:84058573-84058592 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_3:84058614-84058633 | Msa0479180:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_3:84058777-84058796 | Msa0479180:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_3:84058785-84058804 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_3:84058910-84058929 | Msa0479180:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_3:84059044-84059063 | Msa0479180:intron | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_3:84059125-84059144 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_3:84059156-84059175 | Msa0479180:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_3:84059228-84059247 | Msa0479180:CDS | 45.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_3:84057151-84057170 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_3:84057260-84057279 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_3:84057280-84057299 | Msa0479180:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_3:84057341-84057360 | Msa0479180:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_3:84057594-84057613 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_3:84057594-84057613 | Msa0479180:intron | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_3:84058378-84058397 | Msa0479180:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_3:84059147-84059166 | Msa0479180:intron | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_3:84059150-84059169 | Msa0479180:CDS | 50.0% | |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_3:84057151-84057170 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_3:84057260-84057279 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_3:84057280-84057299 | Msa0479180:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_3:84057341-84057360 | Msa0479180:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_3:84057594-84057613 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_3:84057594-84057613 | Msa0479180:intron | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_3:84058378-84058397 | Msa0479180:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_3:84059147-84059166 | Msa0479180:intron | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_3:84059150-84059169 | Msa0479180:CDS | 50.0% | |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_3:84059116-84059135 | None:intergenic | 60.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_3:84059116-84059135 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84056939 | 84059292 | 84056939 | ID=Msa0479180;Name=Msa0479180 |
| chr3_3 | mRNA | 84056939 | 84059292 | 84056939 | ID=Msa0479180-mRNA-1;Parent=Msa0479180;Name=Msa0479180-mRNA-1;_AED=0.05;_eAED=0.08;_QI=0|0.5|0.4|1|1|1|5|115|401 |
| chr3_3 | exon | 84056939 | 84057203 | 84056939 | ID=Msa0479180-mRNA-1:exon:23809;Parent=Msa0479180-mRNA-1 |
| chr3_3 | exon | 84057416 | 84057476 | 84057416 | ID=Msa0479180-mRNA-1:exon:23808;Parent=Msa0479180-mRNA-1 |
| chr3_3 | exon | 84057616 | 84057953 | 84057616 | ID=Msa0479180-mRNA-1:exon:23807;Parent=Msa0479180-mRNA-1 |
| chr3_3 | exon | 84058540 | 84059051 | 84058540 | ID=Msa0479180-mRNA-1:exon:23806;Parent=Msa0479180-mRNA-1 |
| chr3_3 | exon | 84059148 | 84059292 | 84059148 | ID=Msa0479180-mRNA-1:exon:23805;Parent=Msa0479180-mRNA-1 |
| chr3_3 | CDS | 84059148 | 84059292 | 84059148 | ID=Msa0479180-mRNA-1:cds;Parent=Msa0479180-mRNA-1 |
| chr3_3 | CDS | 84058540 | 84059051 | 84058540 | ID=Msa0479180-mRNA-1:cds;Parent=Msa0479180-mRNA-1 |
| chr3_3 | CDS | 84057616 | 84057953 | 84057616 | ID=Msa0479180-mRNA-1:cds;Parent=Msa0479180-mRNA-1 |
| chr3_3 | CDS | 84057416 | 84057476 | 84057416 | ID=Msa0479180-mRNA-1:cds;Parent=Msa0479180-mRNA-1 |
| chr3_3 | CDS | 84057054 | 84057203 | 84057054 | ID=Msa0479180-mRNA-1:cds;Parent=Msa0479180-mRNA-1 |
| chr3_3 | three_prime_UTR | 84056939 | 84057053 | 84056939 | ID=Msa0479180-mRNA-1:three_prime_utr;Parent=Msa0479180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
