Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385070 | XP_004501118.1 | 65.366 | 205 | 45 | 3 | 1 | 193 | 1 | 191 | 2.81e-50 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385070 | A0A1S2Y8N6 | 65.366 | 205 | 45 | 3 | 1 | 193 | 1 | 191 | 1.34e-50 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385070 | Msa0527550 | 0.818866 | 1.567658e-52 | -8.615850e-47 |
| Msa0385070 | Msa0650070 | 0.807226 | 5.604496e-50 | -8.615850e-47 |
| Msa0385070 | Msa0684500 | 0.804155 | 2.474147e-49 | -8.615850e-47 |
| Msa0385070 | Msa1430240 | 0.804587 | 2.011122e-49 | -8.615850e-47 |
| Msa0317280 | Msa0385070 | 0.807332 | 5.323619e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385070 | MtrunA17_Chr3g0142231 | 91.176 | 68 | 6 | 0 | 1 | 68 | 1 | 68 | 3.85e-38 | 130 |
| Msa0385070 | MtrunA17_Chr1g0155831 | 52.764 | 199 | 84 | 6 | 1 | 194 | 1 | 194 | 2.21e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGTGGTGGTTGGTGGAAA+TGG | 0.166783 | 3_1:+88524293 | Msa0385070:CDS |
| TGGAGGAGAGGAGGTGGAGG+TGG | 0.193325 | 3_1:+88524211 | Msa0385070:CDS |
| GGAGGAGGAGGTGGTGGTGG+TGG | 0.196101 | 3_1:+88524179 | Msa0385070:CDS |
| TGGGGATGGGGATGGGGTGG+AGG | 0.203674 | 3_1:+88524271 | Msa0385070:CDS |
| GCCCAACAATTGATATTAAA+AGG | 0.206331 | 3_1:-88523983 | None:intergenic |
| GGAGGAGGTGGTGGTGGAGG+TGG | 0.222064 | 3_1:+88524247 | Msa0385070:CDS |
| AAGCAGTGGAGGAGAGGAGG+TGG | 0.229925 | 3_1:+88524205 | Msa0385070:CDS |
| GGGTGGTGGTTGGTGGAAAT+GGG | 0.232884 | 3_1:+88524294 | Msa0385070:CDS |
| GGTGGAGGTGGATGGGGATG+GGG | 0.237687 | 3_1:+88524259 | Msa0385070:CDS |
| GGTGGATGGGGATGGGGATG+GGG | 0.240345 | 3_1:+88524265 | Msa0385070:CDS |
| AGTGGAGGAGGAGGTGGTGG+TGG | 0.262684 | 3_1:+88524176 | Msa0385070:CDS |
| GGAGGAGGTGGTGGTGGTGG+GGG | 0.265606 | 3_1:+88524182 | Msa0385070:CDS |
| GGCAGTGGAGGAGGAGGTGG+TGG | 0.268958 | 3_1:+88524173 | Msa0385070:CDS |
| GGTGGTGGTGGAGGTGGATG+GGG | 0.275297 | 3_1:+88524253 | Msa0385070:CDS |
| AGGTGGATGGGGATGGGGAT+GGG | 0.285732 | 3_1:+88524264 | Msa0385070:CDS |
| TGGTGGAGGTGGATGGGGAT+GGG | 0.302309 | 3_1:+88524258 | Msa0385070:CDS |
| GAGGTGGATGGGGATGGGGA+TGG | 0.302773 | 3_1:+88524263 | Msa0385070:CDS |
| GGATGGGGATGGGGATGGGG+TGG | 0.302958 | 3_1:+88524268 | Msa0385070:CDS |
| GTGGTGGAGGTGGATGGGGA+TGG | 0.304940 | 3_1:+88524257 | Msa0385070:CDS |
| AGGAGGAGGTGGTGGTGGTG+GGG | 0.306354 | 3_1:+88524181 | Msa0385070:CDS |
| ATGGGTAAGGGTTACTATAA+TGG | 0.307545 | 3_1:-88524372 | None:intergenic |
| AGGAGAGGAGGTGGAGGTGG+GGG | 0.317931 | 3_1:+88524214 | Msa0385070:CDS |
| GGATGGGGATGGGGTGGAGG+GGG | 0.318444 | 3_1:+88524274 | Msa0385070:CDS |
| AACTTTGATGTCCTTATTGT+AGG | 0.320314 | 3_1:-88524126 | None:intergenic |
| GCAAACCAAGACATGGAAAA+AGG | 0.322942 | 3_1:+88524326 | Msa0385070:CDS |
| GAGGAGAGGAGGTGGAGGTG+GGG | 0.323156 | 3_1:+88524213 | Msa0385070:CDS |
| AGGTGGTGGTGGAGGTGGAT+GGG | 0.323646 | 3_1:+88524252 | Msa0385070:CDS |
| GAGGAGGAGGTGGTGGTGGT+GGG | 0.329176 | 3_1:+88524180 | Msa0385070:CDS |
| GAGGTGGTGGTGGAGGTGGA+TGG | 0.337353 | 3_1:+88524251 | Msa0385070:CDS |
| GGGATGGGGATGGGGTGGAG+GGG | 0.338346 | 3_1:+88524273 | Msa0385070:CDS |
| AAAGTGGCATTGCCTTTATT+AGG | 0.343697 | 3_1:-88524041 | None:intergenic |
| GGGAAGCAGTGGAGGAGAGG+AGG | 0.346001 | 3_1:+88524202 | Msa0385070:CDS |
| GGTTGGTGGAAATGGGGTTG+TGG | 0.348056 | 3_1:+88524301 | Msa0385070:CDS |
| GGTGGTGGTTGGTGGAAATG+GGG | 0.351010 | 3_1:+88524295 | Msa0385070:CDS |
| ATATAATCTTCCACCTTGTA+TGG | 0.357142 | 3_1:-88524391 | None:intergenic |
| GGGGATGGGGATGGGGTGGA+GGG | 0.362124 | 3_1:+88524272 | Msa0385070:CDS |
| CAGTGGAGGAGAGGAGGTGG+AGG | 0.365007 | 3_1:+88524208 | Msa0385070:CDS |
| ACACGACAACACCTACAATA+AGG | 0.381805 | 3_1:+88524115 | Msa0385070:CDS |
| TGGGTAAGGGTTACTATAAT+GGG | 0.386604 | 3_1:-88524371 | None:intergenic |
| ATGGAGAACTTCAGAAATCA+TGG | 0.421072 | 3_1:+88523942 | Msa0385070:CDS |
| TCTTCCACCTTGTATGGGTA+AGG | 0.424437 | 3_1:-88524385 | None:intergenic |
| AATGTCAATGCTCCTAATAA+AGG | 0.427040 | 3_1:+88524029 | Msa0385070:CDS |
| AAAAGGAAGGGAGAGGGAAA+AGG | 0.442912 | 3_1:+88524343 | Msa0385070:CDS |
| AAGGTGGAAGATTATATTGT+AGG | 0.455812 | 3_1:+88524397 | Msa0385070:CDS |
| GGAGGAGAGGAGGTGGAGGT+GGG | 0.465712 | 3_1:+88524212 | Msa0385070:CDS |
| GTTTATACCTTGACTAGAGT+TGG | 0.469882 | 3_1:-88524075 | None:intergenic |
| GACAATGAGCTTTACACATA+TGG | 0.478236 | 3_1:-88524513 | None:intergenic |
| ATATCAATTGTTGGGCTCAA+AGG | 0.483217 | 3_1:+88523990 | Msa0385070:CDS |
| TCGATGCAAGGGAATGAGAT+TGG | 0.485071 | 3_1:+88524447 | Msa0385070:CDS |
| AGTTCGTATAATAGAGGTGG+TGG | 0.495800 | 3_1:+88524149 | Msa0385070:intron |
| AGTCAAGGTATAAACGAAGA+AGG | 0.504636 | 3_1:+88524083 | Msa0385070:CDS |
| GACTGCCCTCTTCATTGTGG+TGG | 0.508412 | 3_1:+88524469 | Msa0385070:CDS |
| TGGTGGAAATGGGGTTGTGG+AGG | 0.519867 | 3_1:+88524304 | Msa0385070:CDS |
| TTCGTATAATAGAGGTGGTG+GGG | 0.541348 | 3_1:+88524151 | Msa0385070:intron |
| CTTCCACCTTGTATGGGTAA+GGG | 0.545812 | 3_1:-88524384 | None:intergenic |
| TGAGCATTCAATTTCATCGT+CGG | 0.555064 | 3_1:-88524537 | None:intergenic |
| GTTGGAGAGGGTTACAAAAG+TGG | 0.563271 | 3_1:-88524057 | None:intergenic |
| TACCTTGACTAGAGTTGGAG+AGG | 0.570769 | 3_1:-88524070 | None:intergenic |
| TTGGACTGCCCTCTTCATTG+TGG | 0.571426 | 3_1:+88524466 | Msa0385070:CDS |
| GTTCGTATAATAGAGGTGGT+GGG | 0.583271 | 3_1:+88524150 | Msa0385070:intron |
| TATAATCTTCCACCTTGTAT+GGG | 0.585728 | 3_1:-88524390 | None:intergenic |
| ACCTTGACTAGAGTTGGAGA+GGG | 0.587542 | 3_1:-88524069 | None:intergenic |
| GTCAAGGTATAAACGAAGAA+GGG | 0.594328 | 3_1:+88524084 | Msa0385070:CDS |
| TAGTAACCCTTACCCATACA+AGG | 0.595003 | 3_1:+88524378 | Msa0385070:CDS |
| TGGAGAACTTCAGAAATCAT+GGG | 0.598111 | 3_1:+88523943 | Msa0385070:CDS |
| ATGGTCCACCACAATGAAGA+GGG | 0.598747 | 3_1:-88524474 | None:intergenic |
| ACCCTCTCCAACTCTAGTCA+AGG | 0.601396 | 3_1:+88524068 | Msa0385070:CDS |
| TCGTATAATAGAGGTGGTGG+GGG | 0.613565 | 3_1:+88524152 | Msa0385070:intron |
| CATGGTCCACCACAATGAAG+AGG | 0.641273 | 3_1:-88524475 | None:intergenic |
| TGTGGAGGCAAACCAAGACA+TGG | 0.654829 | 3_1:+88524319 | Msa0385070:CDS |
| TGGTGACAATCATAGTAACA+TGG | 0.674108 | 3_1:-88524493 | None:intergenic |
| TAACCCTTACCCATACAAGG+TGG | 0.739573 | 3_1:+88524381 | Msa0385070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTTTTAATATCAATTGTT+GGG | + | chr3_1:88523982-88524001 | Msa0385070:CDS | 20.0% |
| !! | CTCCTTTTAATATCAATTGT+TGG | + | chr3_1:88523981-88524000 | Msa0385070:CDS | 25.0% |
| ! | AAAGTTAGTTCGTATAATAG+AGG | + | chr3_1:88524143-88524162 | Msa0385070:intron | 25.0% |
| GCCCAACAATTGATATTAAA+AGG | - | chr3_1:88523986-88524005 | None:intergenic | 30.0% | |
| AATGTCAATGCTCCTAATAA+AGG | + | chr3_1:88524029-88524048 | Msa0385070:CDS | 30.0% | |
| AACTTTGATGTCCTTATTGT+AGG | - | chr3_1:88524129-88524148 | None:intergenic | 30.0% | |
| TATAATCTTCCACCTTGTAT+GGG | - | chr3_1:88524393-88524412 | None:intergenic | 30.0% | |
| ATATAATCTTCCACCTTGTA+TGG | - | chr3_1:88524394-88524413 | None:intergenic | 30.0% | |
| AAGGTGGAAGATTATATTGT+AGG | + | chr3_1:88524397-88524416 | Msa0385070:CDS | 30.0% | |
| ATGGAGAACTTCAGAAATCA+TGG | + | chr3_1:88523942-88523961 | Msa0385070:CDS | 35.0% | |
| TGGAGAACTTCAGAAATCAT+GGG | + | chr3_1:88523943-88523962 | Msa0385070:CDS | 35.0% | |
| ATATCAATTGTTGGGCTCAA+AGG | + | chr3_1:88523990-88524009 | Msa0385070:CDS | 35.0% | |
| AAAGTGGCATTGCCTTTATT+AGG | - | chr3_1:88524044-88524063 | None:intergenic | 35.0% | |
| GTTTATACCTTGACTAGAGT+TGG | - | chr3_1:88524078-88524097 | None:intergenic | 35.0% | |
| AGTCAAGGTATAAACGAAGA+AGG | + | chr3_1:88524083-88524102 | Msa0385070:CDS | 35.0% | |
| GTCAAGGTATAAACGAAGAA+GGG | + | chr3_1:88524084-88524103 | Msa0385070:CDS | 35.0% | |
| GTTAGTTCGTATAATAGAGG+TGG | + | chr3_1:88524146-88524165 | Msa0385070:intron | 35.0% | |
| TGGGTAAGGGTTACTATAAT+GGG | - | chr3_1:88524374-88524393 | None:intergenic | 35.0% | |
| ATGGGTAAGGGTTACTATAA+TGG | - | chr3_1:88524375-88524394 | None:intergenic | 35.0% | |
| ATGACAAAAACTCGATGCAA+GGG | + | chr3_1:88524436-88524455 | Msa0385070:CDS | 35.0% | |
| TGGTGACAATCATAGTAACA+TGG | - | chr3_1:88524496-88524515 | None:intergenic | 35.0% | |
| GACAATGAGCTTTACACATA+TGG | - | chr3_1:88524516-88524535 | None:intergenic | 35.0% | |
| ACACGACAACACCTACAATA+AGG | + | chr3_1:88524115-88524134 | Msa0385070:CDS | 40.0% | |
| AGTTCGTATAATAGAGGTGG+TGG | + | chr3_1:88524149-88524168 | Msa0385070:intron | 40.0% | |
| GTTCGTATAATAGAGGTGGT+GGG | + | chr3_1:88524150-88524169 | Msa0385070:intron | 40.0% | |
| TTCGTATAATAGAGGTGGTG+GGG | + | chr3_1:88524151-88524170 | Msa0385070:intron | 40.0% | |
| GCAAACCAAGACATGGAAAA+AGG | + | chr3_1:88524326-88524345 | Msa0385070:CDS | 40.0% | |
| ACCAAGACATGGAAAAAGGA+AGG | + | chr3_1:88524330-88524349 | Msa0385070:CDS | 40.0% | |
| CCAAGACATGGAAAAAGGAA+GGG | + | chr3_1:88524331-88524350 | Msa0385070:CDS | 40.0% | |
| TAGTAACCCTTACCCATACA+AGG | + | chr3_1:88524378-88524397 | Msa0385070:CDS | 40.0% | |
| CATGACAAAAACTCGATGCA+AGG | + | chr3_1:88524435-88524454 | Msa0385070:CDS | 40.0% | |
| GTTGGAGAGGGTTACAAAAG+TGG | - | chr3_1:88524060-88524079 | None:intergenic | 45.0% | |
| ACCTTGACTAGAGTTGGAGA+GGG | - | chr3_1:88524072-88524091 | None:intergenic | 45.0% | |
| TACCTTGACTAGAGTTGGAG+AGG | - | chr3_1:88524073-88524092 | None:intergenic | 45.0% | |
| ! | TCGTATAATAGAGGTGGTGG+GGG | + | chr3_1:88524152-88524171 | Msa0385070:intron | 45.0% |
| ! | CCCTTCCTTTTTCCATGTCT+TGG | - | chr3_1:88524334-88524353 | None:intergenic | 45.0% |
| ACATGGAAAAAGGAAGGGAG+AGG | + | chr3_1:88524336-88524355 | Msa0385070:CDS | 45.0% | |
| CATGGAAAAAGGAAGGGAGA+GGG | + | chr3_1:88524337-88524356 | Msa0385070:CDS | 45.0% | |
| AAAAGGAAGGGAGAGGGAAA+AGG | + | chr3_1:88524343-88524362 | Msa0385070:CDS | 45.0% | |
| TAACCCTTACCCATACAAGG+TGG | + | chr3_1:88524381-88524400 | Msa0385070:CDS | 45.0% | |
| CTTCCACCTTGTATGGGTAA+GGG | - | chr3_1:88524387-88524406 | None:intergenic | 45.0% | |
| TCTTCCACCTTGTATGGGTA+AGG | - | chr3_1:88524388-88524407 | None:intergenic | 45.0% | |
| TCGATGCAAGGGAATGAGAT+TGG | + | chr3_1:88524447-88524466 | Msa0385070:CDS | 45.0% | |
| ATGGTCCACCACAATGAAGA+GGG | - | chr3_1:88524477-88524496 | None:intergenic | 45.0% | |
| ACCCTCTCCAACTCTAGTCA+AGG | + | chr3_1:88524068-88524087 | Msa0385070:CDS | 50.0% | |
| TGTGGAGGCAAACCAAGACA+TGG | + | chr3_1:88524319-88524338 | Msa0385070:CDS | 50.0% | |
| TTGGACTGCCCTCTTCATTG+TGG | + | chr3_1:88524466-88524485 | Msa0385070:CDS | 50.0% | |
| CATGGTCCACCACAATGAAG+AGG | - | chr3_1:88524478-88524497 | None:intergenic | 50.0% | |
| !! | GGGTGGTGGTTGGTGGAAAT+GGG | + | chr3_1:88524294-88524313 | Msa0385070:CDS | 55.0% |
| !! | GGTGGTGGTTGGTGGAAATG+GGG | + | chr3_1:88524295-88524314 | Msa0385070:CDS | 55.0% |
| !! | GGTTGGTGGAAATGGGGTTG+TGG | + | chr3_1:88524301-88524320 | Msa0385070:CDS | 55.0% |
| TGGTGGAAATGGGGTTGTGG+AGG | + | chr3_1:88524304-88524323 | Msa0385070:CDS | 55.0% | |
| GACTGCCCTCTTCATTGTGG+TGG | + | chr3_1:88524469-88524488 | Msa0385070:CDS | 55.0% | |
| !! | AATAGAGGTGGTGGGGGCAG+TGG | + | chr3_1:88524158-88524177 | Msa0385070:intron | 60.0% |
| AAGCAGTGGAGGAGAGGAGG+TGG | + | chr3_1:88524205-88524224 | Msa0385070:CDS | 60.0% | |
| !! | AGGTGGTGGTGGAGGTGGAT+GGG | + | chr3_1:88524252-88524271 | Msa0385070:CDS | 60.0% |
| TGGTGGAGGTGGATGGGGAT+GGG | + | chr3_1:88524258-88524277 | Msa0385070:CDS | 60.0% | |
| AGGTGGATGGGGATGGGGAT+GGG | + | chr3_1:88524264-88524283 | Msa0385070:CDS | 60.0% | |
| !! | GGGGTGGTGGTTGGTGGAAA+TGG | + | chr3_1:88524293-88524312 | Msa0385070:CDS | 60.0% |
| ! | AGTGGAGGAGGAGGTGGTGG+TGG | + | chr3_1:88524176-88524195 | Msa0385070:CDS | 65.0% |
| !! | GAGGAGGAGGTGGTGGTGGT+GGG | + | chr3_1:88524180-88524199 | Msa0385070:CDS | 65.0% |
| !! | AGGAGGAGGTGGTGGTGGTG+GGG | + | chr3_1:88524181-88524200 | Msa0385070:CDS | 65.0% |
| TGGGGGAAGCAGTGGAGGAG+AGG | + | chr3_1:88524199-88524218 | Msa0385070:CDS | 65.0% | |
| GGGAAGCAGTGGAGGAGAGG+AGG | + | chr3_1:88524202-88524221 | Msa0385070:CDS | 65.0% | |
| CAGTGGAGGAGAGGAGGTGG+AGG | + | chr3_1:88524208-88524227 | Msa0385070:CDS | 65.0% | |
| TGGAGGAGAGGAGGTGGAGG+TGG | + | chr3_1:88524211-88524230 | Msa0385070:CDS | 65.0% | |
| GGAGGAGAGGAGGTGGAGGT+GGG | + | chr3_1:88524212-88524231 | Msa0385070:CDS | 65.0% | |
| GAGGAGAGGAGGTGGAGGTG+GGG | + | chr3_1:88524213-88524232 | Msa0385070:CDS | 65.0% | |
| AGGAGAGGAGGTGGAGGTGG+GGG | + | chr3_1:88524214-88524233 | Msa0385070:CDS | 65.0% | |
| !! | GAGGTGGTGGTGGAGGTGGA+TGG | + | chr3_1:88524251-88524270 | Msa0385070:CDS | 65.0% |
| !! | GGTGGTGGTGGAGGTGGATG+GGG | + | chr3_1:88524253-88524272 | Msa0385070:CDS | 65.0% |
| ! | GTGGTGGAGGTGGATGGGGA+TGG | + | chr3_1:88524257-88524276 | Msa0385070:CDS | 65.0% |
| GGTGGAGGTGGATGGGGATG+GGG | + | chr3_1:88524259-88524278 | Msa0385070:CDS | 65.0% | |
| GAGGTGGATGGGGATGGGGA+TGG | + | chr3_1:88524263-88524282 | Msa0385070:CDS | 65.0% | |
| GGTGGATGGGGATGGGGATG+GGG | + | chr3_1:88524265-88524284 | Msa0385070:CDS | 65.0% | |
| !! | AGAGGTGGTGGGGGCAGTGG+AGG | + | chr3_1:88524161-88524180 | Msa0385070:intron | 70.0% |
| GGCAGTGGAGGAGGAGGTGG+TGG | + | chr3_1:88524173-88524192 | Msa0385070:CDS | 70.0% | |
| !! | GGAGGAGGAGGTGGTGGTGG+TGG | + | chr3_1:88524179-88524198 | Msa0385070:CDS | 70.0% |
| !! | GGAGGAGGTGGTGGTGGTGG+GGG | + | chr3_1:88524182-88524201 | Msa0385070:CDS | 70.0% |
| !! | GGTGGTGGTGGGGGAAGCAG+TGG | + | chr3_1:88524191-88524210 | Msa0385070:CDS | 70.0% |
| !! | GGTGGTGGGGGAAGCAGTGG+AGG | + | chr3_1:88524194-88524213 | Msa0385070:CDS | 70.0% |
| AGAGGAGGTGGAGGTGGGGG+CGG | + | chr3_1:88524217-88524236 | Msa0385070:CDS | 70.0% | |
| !! | GGAGGAGGTGGTGGTGGAGG+TGG | + | chr3_1:88524247-88524266 | Msa0385070:CDS | 70.0% |
| GGATGGGGATGGGGATGGGG+TGG | + | chr3_1:88524268-88524287 | Msa0385070:CDS | 70.0% | |
| TGGGGATGGGGATGGGGTGG+AGG | + | chr3_1:88524271-88524290 | Msa0385070:CDS | 70.0% | |
| GGGGATGGGGATGGGGTGGA+GGG | + | chr3_1:88524272-88524291 | Msa0385070:CDS | 70.0% | |
| GGGATGGGGATGGGGTGGAG+GGG | + | chr3_1:88524273-88524292 | Msa0385070:CDS | 70.0% | |
| GGATGGGGATGGGGTGGAGG+GGG | + | chr3_1:88524274-88524293 | Msa0385070:CDS | 70.0% | |
| ! | GTGGAGGGGGTGGTGGTTGG+TGG | + | chr3_1:88524287-88524306 | Msa0385070:CDS | 70.0% |
| !! | GGTGGTGGGGGCAGTGGAGG+AGG | + | chr3_1:88524164-88524183 | Msa0385070:CDS | 75.0% |
| GGTGGGGGCAGTGGAGGAGG+AGG | + | chr3_1:88524167-88524186 | Msa0385070:CDS | 75.0% | |
| GGGGGCAGTGGAGGAGGAGG+TGG | + | chr3_1:88524170-88524189 | Msa0385070:CDS | 75.0% | |
| ! | GGAGGGGGAGGAGGTGGTGG+TGG | + | chr3_1:88524241-88524260 | Msa0385070:CDS | 75.0% |
| !! | GGGGGAGGAGGTGGTGGTGG+AGG | + | chr3_1:88524244-88524263 | Msa0385070:CDS | 75.0% |
| TGGGGATGGGGTGGAGGGGG+TGG | + | chr3_1:88524277-88524296 | Msa0385070:CDS | 75.0% | |
| GGATGGGGTGGAGGGGGTGG+TGG | + | chr3_1:88524280-88524299 | Msa0385070:CDS | 75.0% | |
| ! | GGGGTGGAGGGGGTGGTGGT+TGG | + | chr3_1:88524284-88524303 | Msa0385070:CDS | 75.0% |
| ! | GGAGGTGGAGGTGGGGGCGG+CGG | + | chr3_1:88524220-88524239 | Msa0385070:CDS | 80.0% |
| ! | GTGGAGGTGGGGGCGGCGGA+GGG | + | chr3_1:88524224-88524243 | Msa0385070:CDS | 80.0% |
| ! | TGGAGGTGGGGGCGGCGGAG+GGG | + | chr3_1:88524225-88524244 | Msa0385070:CDS | 80.0% |
| ! | GGCGGAGGGGGAGGAGGTGG+TGG | + | chr3_1:88524238-88524257 | Msa0385070:CDS | 80.0% |
| ! | GGTGGAGGTGGGGGCGGCGG+AGG | + | chr3_1:88524223-88524242 | Msa0385070:CDS | 85.0% |
| ! | GGAGGTGGGGGCGGCGGAGG+GGG | + | chr3_1:88524226-88524245 | Msa0385070:CDS | 85.0% |
| ! | GGCGGCGGAGGGGGAGGAGG+TGG | + | chr3_1:88524235-88524254 | Msa0385070:CDS | 85.0% |
| ! | GGTGGGGGCGGCGGAGGGGG+AGG | + | chr3_1:88524229-88524248 | Msa0385070:CDS | 90.0% |
| ! | GGGGGCGGCGGAGGGGGAGG+AGG | + | chr3_1:88524232-88524251 | Msa0385070:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88523942 | 88524546 | 88523942 | ID=Msa0385070;Name=Msa0385070 |
| chr3_1 | mRNA | 88523942 | 88524546 | 88523942 | ID=Msa0385070-mRNA-1;Parent=Msa0385070;Name=Msa0385070-mRNA-1;_AED=0.02;_eAED=0.11;_QI=0|0|0|1|0|0|2|0|195 |
| chr3_1 | exon | 88523942 | 88524145 | 88523942 | ID=Msa0385070-mRNA-1:exon:23925;Parent=Msa0385070-mRNA-1 |
| chr3_1 | exon | 88524163 | 88524546 | 88524163 | ID=Msa0385070-mRNA-1:exon:23926;Parent=Msa0385070-mRNA-1 |
| chr3_1 | CDS | 88523942 | 88524145 | 88523942 | ID=Msa0385070-mRNA-1:cds;Parent=Msa0385070-mRNA-1 |
| chr3_1 | CDS | 88524163 | 88524546 | 88524163 | ID=Msa0385070-mRNA-1:cds;Parent=Msa0385070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
