AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684500 MtrunA17_Chr4g0032401 97.598 333 5 2 1 331 1 332 0.0 667
Msa0684500 MtrunA17_Chr2g0328771 58.908 348 91 13 1 326 1 318 1.76e-113 332
Msa0684500 MtrunA17_Chr3g0088461 84.000 125 15 1 1 120 3 127 1.07e-72 228
Msa0684500 MtrunA17_Chr1g0193371 80.374 107 21 0 14 120 11 117 2.82e-59 194
Msa0684500 MtrunA17_Chr2g0330041 74.107 112 29 0 8 119 5 116 7.59e-58 192
Msa0684500 MtrunA17_Chr7g0270891 77.570 107 24 0 14 120 11 117 5.07e-57 189
Msa0684500 MtrunA17_Chr3g0117091 79.245 106 22 0 14 119 11 116 6.38e-57 188
Msa0684500 MtrunA17_Chr4g0058631 78.302 106 23 0 14 119 11 116 7.91e-57 188
Msa0684500 MtrunA17_Chr1g0211161 77.358 106 24 0 14 119 12 117 2.17e-56 182
Msa0684500 MtrunA17_Chr1g0193801 75.701 107 26 0 14 120 11 117 6.23e-56 186
Msa0684500 MtrunA17_Chr7g0271241 82.828 99 17 0 14 112 11 109 2.79e-55 184
Msa0684500 MtrunA17_Chr8g0342521 62.774 137 44 2 11 147 8 137 4.95e-55 183
Msa0684500 MtrunA17_Chr8g0342541 70.536 112 33 0 8 119 5 116 1.05e-54 182
Msa0684500 MtrunA17_Chr8g0387421 68.182 110 35 0 11 120 8 117 2.67e-53 177
Msa0684500 MtrunA17_Chr5g0397231 56.579 152 58 3 11 162 8 151 3.90e-52 175
Msa0684500 MtrunA17_Chr1g0203441 71.818 110 31 0 10 119 8 117 4.05e-52 173
Msa0684500 MtrunA17_Chr2g0309911 50.000 182 80 5 14 188 10 187 8.84e-51 171
Msa0684500 MtrunA17_Chr8g0342481 69.027 113 34 1 8 119 5 117 9.86e-51 173
Msa0684500 MtrunA17_Chr6g0470971 58.955 134 52 1 5 135 4 137 9.04e-50 167
Msa0684500 MtrunA17_Chr4g0042671 54.861 144 58 1 15 158 12 148 1.02e-49 171
Msa0684500 MtrunA17_Chr2g0281071 66.667 111 37 0 12 122 10 120 2.64e-49 168
Msa0684500 MtrunA17_Chr5g0435101 52.632 152 56 3 1 152 1 136 7.92e-49 162
Msa0684500 MtrunA17_Chr3g0131121 69.903 103 31 0 17 119 14 116 8.52e-49 165
Msa0684500 MtrunA17_Chr4g0048511 64.602 113 40 0 10 122 8 120 1.42e-48 166
Msa0684500 MtrunA17_Chr4g0037141 48.824 170 73 3 17 184 14 171 1.74e-48 164
Msa0684500 MtrunA17_Chr2g0323411 60.000 130 45 1 13 142 10 132 4.58e-48 164
Msa0684500 MtrunA17_Chr8g0385321 66.990 103 34 0 17 119 14 116 8.30e-48 163
Msa0684500 MtrunA17_Chr3g0115821 62.500 112 42 0 11 122 8 119 1.25e-47 163
Msa0684500 MtrunA17_Chr7g0228891 58.140 129 51 1 15 140 12 140 4.27e-47 160
Msa0684500 MtrunA17_Chr2g0323351 64.286 112 40 0 15 126 12 123 4.82e-47 159
Msa0684500 MtrunA17_Chr5g0434571 57.895 133 49 1 15 140 48 180 5.00e-47 162
Msa0684500 MtrunA17_Chr7g0217741 64.815 108 38 0 15 122 12 119 5.14e-47 161
Msa0684500 MtrunA17_Chr3g0110351 66.667 108 36 0 15 122 12 119 6.28e-47 160
Msa0684500 MtrunA17_Chr6g0453471 65.741 108 37 0 15 122 12 119 7.82e-47 162
Msa0684500 MtrunA17_Chr7g0274581 42.857 203 95 5 15 217 12 193 9.91e-47 157
Msa0684500 MtrunA17_Chr1g0203411 57.895 114 48 0 15 128 12 125 2.21e-46 159
Msa0684500 MtrunA17_Chr5g0410961 55.814 129 50 1 15 143 12 133 4.64e-46 159
Msa0684500 MtrunA17_Chr4g0057031 63.889 108 39 0 15 122 12 119 8.01e-46 157
Msa0684500 MtrunA17_Chr4g0044421 48.538 171 73 4 1 161 1 166 9.84e-46 154
Msa0684500 MtrunA17_Chr4g0070611 45.732 164 89 0 15 178 12 175 1.46e-45 157
Msa0684500 MtrunA17_Chr4g0039971 55.385 130 51 1 13 142 11 133 2.87e-45 157
Msa0684500 MtrunA17_Chr5g0395281 52.817 142 56 2 1 142 2 132 4.73e-45 155
Msa0684500 MtrunA17_Chr7g0228231 44.776 201 95 5 1 193 1 193 5.36e-45 152
Msa0684500 MtrunA17_Chr8g0349261 61.062 113 43 1 11 122 9 121 6.01e-45 155
Msa0684500 MtrunA17_Chr1g0187761 60.345 116 46 0 15 130 12 127 7.39e-45 154
Msa0684500 MtrunA17_Chr6g0452271 57.143 112 48 0 11 122 8 119 2.62e-44 154
Msa0684500 MtrunA17_Chr4g0070641 49.635 137 69 0 15 151 12 148 8.45e-44 148
Msa0684500 MtrunA17_Chr4g0068061 57.627 118 46 1 15 128 12 129 2.13e-43 152
Msa0684500 MtrunA17_Chr1g0167661 62.162 111 42 0 15 125 12 122 2.37e-43 150
Msa0684500 MtrunA17_Chr3g0103281 61.111 108 42 0 15 122 12 119 2.66e-43 152
Msa0684500 MtrunA17_Chr7g0275911 59.813 107 43 0 15 121 12 118 6.18e-43 149
Msa0684500 MtrunA17_Chr4g0022931 57.018 114 49 0 8 121 6 119 9.23e-43 149
Msa0684500 MtrunA17_Chr8g0343831 61.111 108 42 0 17 124 10 117 1.27e-42 148
Msa0684500 MtrunA17_Chr1g0167691 62.857 105 39 0 15 119 12 116 1.67e-42 147
Msa0684500 MtrunA17_Chr3g0121241 59.813 107 43 0 15 121 42 148 1.96e-42 149
Msa0684500 MtrunA17_Chr1g0209661 52.500 120 57 0 3 122 15 134 3.31e-42 148
Msa0684500 MtrunA17_Chr6g0450101 56.757 111 48 0 12 122 11 121 3.42e-42 145
Msa0684500 MtrunA17_Chr7g0261281 61.905 105 40 0 15 119 12 116 5.82e-42 147
Msa0684500 MtrunA17_Chr4g0022901 56.303 119 51 1 8 125 6 124 8.47e-42 146
Msa0684500 MtrunA17_Chr4g0055981 52.381 126 60 0 9 134 49 174 2.29e-41 144
Msa0684500 MtrunA17_Chr1g0168661 62.264 106 40 0 16 121 22 127 2.34e-41 144
Msa0684500 MtrunA17_Chr5g0417821 61.111 108 42 0 15 122 7 114 5.37e-41 144
Msa0684500 MtrunA17_Chr8g0346561 59.434 106 43 0 15 120 12 117 5.75e-41 145
Msa0684500 MtrunA17_Chr1g0194951 59.633 109 44 0 15 123 12 120 1.31e-40 145
Msa0684500 MtrunA17_Chr4g0022911 56.140 114 49 1 13 125 11 124 1.54e-40 143
Msa0684500 MtrunA17_Chr2g0311221 61.165 103 40 0 11 113 10 112 2.25e-40 144
Msa0684500 MtrunA17_Chr7g0254411 54.701 117 53 0 15 131 12 128 3.32e-40 144
Msa0684500 MtrunA17_Chr4g0060721 52.756 127 59 1 15 140 13 139 3.95e-40 143
Msa0684500 MtrunA17_Chr3g0092401 52.893 121 57 0 15 135 13 133 5.65e-40 142
Msa0684500 MtrunA17_Chr7g0217221 59.434 106 43 0 15 120 12 117 6.27e-40 141
Msa0684500 MtrunA17_Chr3g0099131 57.547 106 45 0 15 120 41 146 2.96e-39 145
Msa0684500 MtrunA17_Chr1g0152011 41.618 173 90 3 15 176 12 184 3.13e-39 141
Msa0684500 MtrunA17_Chr1g0151941 53.271 107 49 1 14 119 11 117 3.59e-39 139
Msa0684500 MtrunA17_Chr1g0186061 59.259 108 44 0 14 121 19 126 4.35e-39 139
Msa0684500 MtrunA17_Chr5g0400821 40.541 185 100 3 11 185 8 192 7.17e-39 139
Msa0684500 MtrunA17_Chr1g0154031 58.654 104 43 0 15 118 76 179 9.02e-39 142
Msa0684500 MtrunA17_Chr8g0354661 57.692 104 44 0 15 118 37 140 1.07e-38 144
Msa0684500 MtrunA17_Chr6g0453211 61.616 99 38 0 15 113 12 110 1.31e-38 139
Msa0684500 MtrunA17_Chr1g0194291 51.667 120 58 0 7 126 13 132 1.41e-38 137
Msa0684500 MtrunA17_Chr1g0194301 50.833 120 59 0 7 126 25 144 1.50e-38 138
Msa0684500 MtrunA17_Chr1g0180391 50.847 118 58 0 3 120 7 124 3.72e-38 135
Msa0684500 MtrunA17_Chr3g0080861 55.660 106 47 0 15 120 37 142 5.07e-38 141
Msa0684500 MtrunA17_Chr4g0028311 52.991 117 54 1 11 126 8 124 1.26e-37 137
Msa0684500 MtrunA17_Chr7g0247131 60.204 98 37 1 47 142 10 107 4.85e-37 134
Msa0684500 MtrunA17_Chr4g0022881 56.863 102 44 0 16 117 13 114 1.04e-36 132
Msa0684500 MtrunA17_Chr4g0022891 55.882 102 45 0 15 116 12 113 1.20e-36 132
Msa0684500 MtrunA17_Chr8g0342531 67.073 82 27 0 11 92 8 89 1.31e-36 129
Msa0684500 MtrunA17_Chr8g0342511 70.000 80 24 0 11 90 8 87 1.51e-36 127
Msa0684500 MtrunA17_Chr2g0327821 45.985 137 61 1 14 137 5 141 2.21e-36 131
Msa0684500 MtrunA17_Chr2g0322521 57.547 106 45 0 15 120 29 134 2.39e-36 135
Msa0684500 MtrunA17_Chr3g0135311 52.727 110 51 1 11 119 8 117 2.46e-36 134
Msa0684500 MtrunA17_Chr2g0293911 54.464 112 51 0 15 126 24 135 3.24e-36 133
Msa0684500 MtrunA17_Chr1g0192411 51.754 114 55 0 7 120 4 117 4.86e-36 134
Msa0684500 MtrunA17_Chr7g0269831 56.522 115 50 0 15 129 12 126 8.05e-36 132
Msa0684500 MtrunA17_Chr7g0264641 52.294 109 51 1 15 122 12 120 9.39e-36 130
Msa0684500 MtrunA17_Chr4g0068921 49.587 121 61 0 6 126 15 135 1.35e-35 127
Msa0684500 MtrunA17_Chr7g0240821 51.786 112 54 0 20 131 6 117 2.58e-35 128
Msa0684500 MtrunA17_Chr2g0327351 58.000 100 41 1 15 113 12 111 2.74e-35 130
Msa0684500 MtrunA17_Chr4g0030881 49.167 120 54 1 16 128 8 127 7.16e-35 127
Msa0684500 MtrunA17_Chr5g0434831 54.286 105 48 0 15 119 7 111 1.28e-34 125
Msa0684500 MtrunA17_Chr5g0434911 54.286 105 48 0 15 119 21 125 1.32e-34 127
Msa0684500 MtrunA17_Chr5g0434931 52.381 105 50 0 15 119 35 139 1.73e-34 127
Msa0684500 MtrunA17_Chr8g0342461 66.279 86 28 1 8 92 5 90 2.06e-34 123
Msa0684500 MtrunA17_Chr8g0342471 66.279 86 28 1 8 92 5 90 2.80e-34 122
Msa0684500 MtrunA17_Chr4g0054391 55.340 103 45 1 11 112 8 110 6.44e-34 126
Msa0684500 MtrunA17_Chr8g0360111 52.830 106 50 0 10 115 20 125 5.45e-33 123
Msa0684500 MtrunA17_Chr5g0440781 41.667 144 77 3 16 158 13 150 7.04e-33 120
Msa0684500 MtrunA17_Chr4g0042611 62.821 78 29 0 14 91 11 88 7.41e-33 117
Msa0684500 MtrunA17_Chr4g0072751 53.922 102 46 1 13 113 10 111 8.79e-33 124
Msa0684500 MtrunA17_Chr6g0487491 47.692 130 59 2 7 127 4 133 9.21e-33 122
Msa0684500 MtrunA17_Chr7g0220341 51.351 111 52 1 11 119 21 131 1.78e-32 122
Msa0684500 MtrunA17_Chr5g0440761 41.667 144 77 3 16 158 13 150 2.21e-32 121
Msa0684500 MtrunA17_Chr5g0434841 51.429 105 51 0 15 119 20 124 2.36e-32 122
Msa0684500 MtrunA17_Chr5g0441141 41.667 144 77 3 16 158 13 150 2.82e-32 121
Msa0684500 MtrunA17_Chr7g0228991 51.429 105 51 0 15 119 29 133 7.59e-32 120
Msa0684500 MtrunA17_Chr8g0334881 41.447 152 76 3 10 149 5 155 3.64e-31 119
Msa0684500 MtrunA17_Chr5g0441131 50.000 106 52 1 16 120 10 115 3.41e-30 113
Msa0684500 MtrunA17_Chr5g0395221 62.500 80 30 0 12 91 9 88 1.74e-29 108
Msa0684500 MtrunA17_Chr4g0013361 45.833 120 64 1 15 133 10 129 2.71e-29 114
Msa0684500 MtrunA17_Chr4g0053431 39.205 176 88 5 17 180 5 173 9.97e-29 112
Msa0684500 MtrunA17_Chr2g0323321 60.000 85 34 0 11 95 7 91 1.74e-28 106
Msa0684500 MtrunA17_Chr3g0099141 52.941 85 40 0 13 97 38 122 4.70e-28 106
Msa0684500 MtrunA17_Chr6g0454921 48.113 106 54 1 17 122 15 119 9.13e-28 107
Msa0684500 MtrunA17_Chr5g0401731 48.113 106 54 1 17 122 15 119 9.69e-28 110
Msa0684500 MtrunA17_Chr5g0429661 40.288 139 79 2 15 150 120 257 1.58e-27 110
Msa0684500 MtrunA17_Chr2g0294811 59.740 77 31 0 15 91 12 88 2.05e-27 103
Msa0684500 MtrunA17_Chr4g0008551 50.980 102 49 1 17 118 38 138 5.50e-27 108
Msa0684500 MtrunA17_Chr3g0133601 47.863 117 60 1 17 133 37 152 3.83e-26 103
Msa0684500 MtrunA17_Chr7g0238631 46.296 108 57 1 12 119 108 214 1.27e-25 107
Msa0684500 MtrunA17_Chr3g0139671 46.296 108 57 1 12 119 80 186 1.53e-25 107
Msa0684500 MtrunA17_Chr3g0117511 44.444 117 62 2 2 118 170 283 4.04e-25 105
Msa0684500 MtrunA17_Chr5g0434901 60.294 68 27 0 49 116 7 74 2.89e-24 95.5
Msa0684500 MtrunA17_Chr7g0229101 60.000 70 28 0 47 116 4 73 4.08e-24 97.8
Msa0684500 MtrunA17_Chr6g0460661 40.171 117 67 2 12 127 11 125 4.61e-24 96.7
Msa0684500 MtrunA17_Chr5g0437321 47.664 107 55 1 9 115 11 116 1.08e-23 98.6
Msa0684500 MtrunA17_Chr7g0229131 57.746 71 30 0 47 117 4 74 1.10e-23 95.9
Msa0684500 MtrunA17_Chr5g0425591 51.220 82 39 1 16 96 10 91 1.24e-23 93.2
Msa0684500 MtrunA17_Chr6g0480581 45.545 101 54 1 17 117 4 103 1.26e-23 97.4
Msa0684500 MtrunA17_Chr4g0058991 41.818 110 63 1 9 118 201 309 1.26e-23 100
Msa0684500 MtrunA17_Chr6g0460671 42.735 117 65 2 12 127 93 208 1.80e-23 99.4
Msa0684500 MtrunA17_Chr5g0417621 41.441 111 64 1 13 123 130 239 3.96e-23 99.4
Msa0684500 MtrunA17_Chr1g0157731 43.519 108 60 1 12 119 86 192 4.42e-23 100
Msa0684500 MtrunA17_Chr4g0042501 39.850 133 76 3 5 136 94 223 5.56e-23 98.6
Msa0684500 MtrunA17_Chr6g0453751 46.392 97 43 2 9 96 14 110 2.19e-21 88.2
Msa0684500 MtrunA17_Chr1g0177901 40.000 130 68 3 27 156 7 126 3.71e-21 90.1
Msa0684500 MtrunA17_Chr3g0093811 47.674 86 42 1 40 122 4 89 1.43e-20 89.7
Msa0684500 MtrunA17_Chr7g0228531 42.202 109 60 3 17 125 220 325 2.29e-20 91.3
Msa0684500 MtrunA17_Chr5g0397841 44.118 102 56 1 11 112 104 204 4.81e-20 90.5
Msa0684500 MtrunA17_Chr3g0125801 42.593 108 59 2 17 123 16 121 5.10e-20 88.6
Msa0684500 MtrunA17_Chr7g0228401 47.191 89 44 2 36 124 298 383 1.82e-19 89.0
Msa0684500 MtrunA17_Chr7g0254261 42.157 102 58 1 17 118 89 189 1.15e-18 85.5
Msa0684500 MtrunA17_Chr7g0233061 38.261 115 68 3 17 131 180 291 4.64e-18 84.0
Msa0684500 MtrunA17_Chr7g0228481 39.450 109 63 3 17 125 220 325 4.87e-17 81.6
Msa0684500 MtrunA17_Chr1g0193901 50.000 92 44 2 7 96 3 94 1.45e-16 74.7
Msa0684500 MtrunA17_Chr1g0193891 50.000 92 44 2 7 96 3 94 1.45e-16 74.7
Msa0684500 MtrunA17_Chr1g0193871 50.000 92 44 2 7 96 3 94 1.45e-16 74.7
Msa0684500 MtrunA17_Chr1g0193881 50.000 92 44 2 7 96 3 94 1.45e-16 74.7
Msa0684500 MtrunA17_Chr7g0238651 39.362 94 55 1 20 111 10 103 6.56e-16 77.8
Msa0684500 MtrunA17_Chr5g0416341 36.634 101 63 1 20 120 29 128 7.38e-16 78.2
Msa0684500 MtrunA17_Chr8g0362231 36.283 113 70 2 20 131 25 136 1.23e-15 77.4
Msa0684500 MtrunA17_Chr5g0434871 60.465 43 17 0 77 119 2 44 1.47e-13 65.1
Msa0684500 MtrunA17_Chr3g0104491 38.272 81 45 2 56 132 1 80 1.36e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684500 AT3G08500.1 45.879 364 136 15 1 329 3 340 1.59e-74 233
Msa0684500 AT5G12870.1 82.540 126 19 1 1 123 1 126 3.47e-71 223
Msa0684500 AT1G09540.1 79.439 107 22 0 14 120 11 117 5.07e-59 194
Msa0684500 AT5G26660.1 79.439 107 22 0 14 120 11 117 5.85e-58 191
Msa0684500 AT1G57560.1 78.302 106 23 0 14 119 11 116 8.79e-58 189
Msa0684500 AT1G57560.2 78.302 106 23 0 14 119 11 116 9.67e-58 188
Msa0684500 AT3G13890.2 75.229 109 27 0 11 119 8 116 1.34e-57 190
Msa0684500 AT4G01680.3 77.570 107 24 0 14 120 11 117 2.30e-57 186
Msa0684500 AT4G01680.1 77.570 107 24 0 14 120 11 117 1.47e-56 187
Msa0684500 AT3G13890.1 69.492 118 27 1 11 119 8 125 1.48e-54 182
Msa0684500 AT1G63910.1 68.182 110 35 0 11 120 8 117 4.90e-53 179
Msa0684500 AT4G01680.2 69.748 119 24 1 14 120 11 129 5.13e-53 178
Msa0684500 AT3G12720.1 67.925 106 34 0 14 119 21 126 3.19e-50 169
Msa0684500 AT4G05100.1 68.519 108 34 0 15 122 13 120 8.83e-50 169
Msa0684500 AT4G21440.1 68.519 108 34 0 15 122 12 119 2.53e-49 168
Msa0684500 AT2G16720.1 51.829 164 66 2 17 178 14 166 5.57e-49 165
Msa0684500 AT5G54230.1 67.593 108 35 0 15 122 12 119 1.25e-48 166
Msa0684500 AT1G22640.1 61.864 118 43 1 13 130 10 125 2.56e-48 163
Msa0684500 AT3G02940.2 56.061 132 51 1 11 142 8 132 4.74e-48 164
Msa0684500 AT5G10280.1 63.393 112 41 0 11 122 8 119 7.09e-48 164
Msa0684500 AT4G12350.1 63.717 113 41 0 15 127 12 124 8.96e-48 162
Msa0684500 AT3G02940.1 56.061 132 51 1 11 142 8 132 9.00e-48 164
Msa0684500 AT3G02940.3 56.061 132 51 1 11 142 8 132 9.00e-48 164
Msa0684500 AT4G09460.1 66.990 103 34 0 17 119 14 116 9.49e-48 161
Msa0684500 AT4G34990.1 67.961 103 33 0 17 119 14 116 1.14e-47 162
Msa0684500 AT3G01140.2 65.741 108 37 0 15 122 12 119 2.21e-47 163
Msa0684500 AT4G38620.1 66.667 105 35 0 17 121 14 118 3.66e-47 160
Msa0684500 AT5G65230.1 64.815 108 38 0 15 122 12 119 4.66e-47 161
Msa0684500 AT4G28110.1 66.667 105 35 0 15 119 12 116 5.20e-47 160
Msa0684500 AT3G01140.1 63.393 112 41 0 11 122 51 162 6.07e-47 163
Msa0684500 AT5G15310.4 64.815 108 38 0 15 122 12 119 6.62e-47 159
Msa0684500 AT5G15310.1 64.815 108 38 0 15 122 12 119 8.52e-47 161
Msa0684500 AT5G15310.2 64.815 108 38 0 15 122 12 119 8.90e-47 160
Msa0684500 AT5G61420.2 46.988 166 87 1 15 180 12 176 1.09e-46 162
Msa0684500 AT2G31180.1 53.147 143 64 2 15 156 12 152 1.25e-46 158
Msa0684500 AT5G60890.1 53.125 128 56 1 15 138 12 139 1.91e-46 159
Msa0684500 AT3G48920.1 64.815 108 38 0 10 117 13 120 2.77e-46 158
Msa0684500 AT5G14340.1 56.923 130 53 1 15 141 24 153 4.26e-46 158
Msa0684500 AT5G14750.1 57.500 120 50 1 1 119 1 120 5.39e-46 155
Msa0684500 AT1G66230.1 65.741 108 37 0 15 122 12 119 6.16e-46 157
Msa0684500 AT4G25560.1 63.025 119 43 1 6 123 1 119 9.47e-46 157
Msa0684500 AT1G34670.1 62.963 108 40 0 15 122 12 119 1.76e-45 159
Msa0684500 AT3G27920.1 48.649 148 70 1 10 157 9 150 2.12e-45 154
Msa0684500 AT5G16600.1 63.889 108 39 0 15 122 12 119 2.14e-45 157
Msa0684500 AT3G61250.1 62.037 108 41 0 15 122 12 119 2.34e-45 157
Msa0684500 AT5G16770.4 54.688 128 51 1 15 142 12 132 3.85e-45 157
Msa0684500 AT5G16770.3 54.688 128 51 1 15 142 12 132 3.85e-45 157
Msa0684500 AT3G23250.1 60.748 107 42 0 15 121 12 118 4.62e-45 155
Msa0684500 AT1G35515.1 60.550 109 43 0 13 121 10 118 5.14e-45 153
Msa0684500 AT1G74430.1 64.762 105 37 0 15 119 12 116 6.37e-45 154
Msa0684500 AT5G16770.1 54.688 128 51 1 15 142 12 132 6.47e-45 156
Msa0684500 AT5G16770.2 54.688 128 51 1 15 142 12 132 6.47e-45 156
Msa0684500 AT1G18570.1 64.762 105 37 0 15 119 13 117 6.78e-45 157
Msa0684500 AT5G52600.1 43.503 177 90 2 5 173 2 176 8.58e-45 152
Msa0684500 AT3G27810.1 46.429 168 80 2 13 179 18 176 8.74e-45 153
Msa0684500 AT4G22680.1 62.963 108 40 0 15 122 12 119 9.39e-45 154
Msa0684500 AT1G06180.1 66.667 105 35 0 15 119 12 116 1.84e-44 152
Msa0684500 AT5G52260.1 69.903 103 31 0 16 118 13 115 1.90e-44 153
Msa0684500 AT5G40330.1 48.951 143 68 1 16 158 13 150 2.37e-44 151
Msa0684500 AT3G01530.1 56.452 124 53 1 3 125 12 135 9.79e-44 149
Msa0684500 AT2G47460.1 61.111 108 42 0 15 122 12 119 2.04e-43 153
Msa0684500 AT5G56110.1 60.550 109 43 0 15 123 12 120 3.36e-43 151
Msa0684500 AT5G40350.1 57.407 108 46 0 12 119 14 121 5.44e-43 148
Msa0684500 AT5G07700.1 60.952 105 41 0 15 119 12 116 5.65e-43 151
Msa0684500 AT5G07700.2 60.952 105 41 0 15 119 12 116 5.65e-43 151
Msa0684500 AT5G07690.1 54.331 127 56 1 15 141 12 136 5.75e-43 151
Msa0684500 AT1G56160.1 54.135 133 61 0 14 146 13 145 5.92e-43 150
Msa0684500 AT1G79180.1 56.000 125 55 0 11 135 10 134 8.61e-43 150
Msa0684500 AT4G17785.2 60.185 108 43 0 15 122 13 120 9.54e-43 151
Msa0684500 AT4G17785.1 60.185 108 43 0 15 122 13 120 1.11e-42 151
Msa0684500 AT1G16490.1 45.614 171 78 2 11 169 10 177 1.97e-42 148
Msa0684500 AT3G62610.1 56.198 121 48 1 15 130 12 132 3.75e-42 149
Msa0684500 AT5G62320.1 45.833 168 63 3 15 175 13 159 1.21e-41 145
Msa0684500 AT1G68320.1 55.856 111 49 0 12 122 16 126 2.20e-41 146
Msa0684500 AT5G49330.1 61.905 105 40 0 15 119 12 116 2.73e-41 147
Msa0684500 AT5G35550.1 63.208 106 39 0 14 119 13 118 3.51e-41 144
Msa0684500 AT3G13540.1 57.143 105 45 0 15 119 23 127 5.23e-41 144
Msa0684500 AT3G12820.1 57.522 113 48 0 7 119 6 118 5.44e-41 143
Msa0684500 AT1G74080.1 60.952 105 41 0 15 119 12 116 7.88e-41 145
Msa0684500 AT3G30210.1 62.037 108 41 0 16 123 28 135 1.77e-40 143
Msa0684500 AT1G18710.1 58.095 105 44 0 15 119 12 116 1.80e-40 143
Msa0684500 AT3G47600.1 57.407 108 46 0 15 122 12 119 2.64e-40 144
Msa0684500 AT1G08810.1 59.048 105 43 0 15 119 12 116 4.71e-40 142
Msa0684500 AT3G24310.1 57.500 120 45 1 16 135 19 132 6.32e-40 141
Msa0684500 AT1G48000.1 46.405 153 76 2 14 164 31 179 6.96e-40 140
Msa0684500 AT5G62470.2 56.481 108 47 0 15 122 12 119 1.29e-39 143
Msa0684500 AT4G26930.1 42.857 168 92 1 15 182 19 182 1.54e-39 144
Msa0684500 AT1G74650.1 57.798 109 46 0 14 122 11 119 2.03e-39 142
Msa0684500 AT4G13480.1 57.658 111 47 0 16 126 7 117 2.41e-39 140
Msa0684500 AT5G55020.1 57.547 106 45 0 15 120 26 131 2.68e-39 145
Msa0684500 AT2G47190.1 49.600 125 63 0 10 134 15 139 2.88e-39 140
Msa0684500 AT2G26960.1 43.293 164 82 2 17 170 22 184 3.47e-39 143
Msa0684500 AT5G26660.2 78.481 79 17 0 42 120 8 86 4.80e-39 140
Msa0684500 AT3G49690.1 59.259 108 43 1 15 121 12 119 4.90e-39 140
Msa0684500 AT2G32460.1 56.604 106 46 0 15 120 18 123 5.42e-39 144
Msa0684500 AT2G32460.2 56.604 106 46 0 15 120 6 111 5.66e-39 144
Msa0684500 AT3G28470.1 59.223 103 42 0 11 113 8 110 5.82e-39 140
Msa0684500 AT5G06100.1 57.547 106 45 0 15 120 32 137 6.68e-39 143
Msa0684500 AT5G65790.1 56.250 112 48 1 11 121 8 119 1.09e-38 141
Msa0684500 AT3G28910.1 54.464 112 51 0 15 126 12 123 1.36e-38 139
Msa0684500 AT5G06100.5 57.547 106 45 0 15 120 32 137 1.94e-38 143
Msa0684500 AT5G06100.2 57.547 106 45 0 15 120 32 137 1.94e-38 143
Msa0684500 AT5G06100.3 57.547 106 45 0 15 120 32 137 1.94e-38 143
Msa0684500 AT5G06100.4 57.547 106 45 0 15 120 32 137 1.94e-38 143
Msa0684500 AT1G25340.1 54.206 107 49 0 16 122 19 125 2.10e-38 138
Msa0684500 AT3G11440.2 54.630 108 49 0 13 120 39 146 5.14e-38 141
Msa0684500 AT5G62470.1 56.481 108 46 1 15 122 12 118 9.24e-38 138
Msa0684500 AT3G11440.3 54.630 108 49 0 13 120 39 146 1.70e-37 141
Msa0684500 AT3G11440.4 54.630 108 49 0 13 120 39 146 1.70e-37 141
Msa0684500 AT3G11440.1 54.630 108 49 0 13 120 39 146 1.70e-37 141
Msa0684500 AT5G23000.1 55.556 108 47 1 13 119 10 117 3.85e-37 136
Msa0684500 AT1G79180.2 44.937 158 54 1 11 135 10 167 6.55e-37 135
Msa0684500 AT3G06490.1 57.407 108 46 0 15 122 19 126 6.96e-37 135
Msa0684500 AT5G57620.1 56.604 106 45 1 15 119 12 117 1.28e-36 134
Msa0684500 AT5G59780.3 52.212 113 54 0 16 128 9 121 5.26e-36 130
Msa0684500 AT3G46130.1 51.327 113 55 0 16 128 10 122 1.10e-35 130
Msa0684500 AT3G53200.1 54.128 109 50 0 10 118 4 112 6.35e-35 127
Msa0684500 AT2G36890.1 51.818 110 52 1 11 119 8 117 2.12e-34 128
Msa0684500 AT2G36890.2 51.818 110 52 1 11 119 49 158 3.32e-34 128
Msa0684500 AT5G49620.1 51.786 112 54 0 15 126 26 137 5.75e-34 127
Msa0684500 AT4G37780.1 52.830 106 49 1 15 119 12 117 5.87e-34 127
Msa0684500 AT1G25340.2 51.402 107 47 1 16 122 19 120 1.54e-33 125
Msa0684500 AT1G66370.1 50.909 110 54 0 9 118 2 111 2.13e-33 124
Msa0684500 AT1G25340.3 51.402 107 47 1 16 122 19 120 2.83e-33 125
Msa0684500 AT2G26950.1 45.378 119 64 1 17 135 18 135 3.28e-32 124
Msa0684500 AT5G35550.2 72.727 77 21 0 43 119 45 121 3.31e-32 121
Msa0684500 AT3G27810.2 46.617 133 61 2 48 179 4 127 1.28e-31 117
Msa0684500 AT3G47600.2 48.819 127 58 3 27 153 22 141 2.07e-31 120
Msa0684500 AT1G66380.1 48.819 127 57 1 15 133 8 134 3.09e-31 115
Msa0684500 AT3G60460.1 44.898 147 75 3 1 146 1 142 7.79e-31 118
Msa0684500 AT3G12820.2 72.464 69 19 0 51 119 2 70 2.10e-30 114
Msa0684500 AT5G49620.2 46.032 126 54 1 15 126 26 151 2.16e-30 117
Msa0684500 AT5G14750.3 68.116 69 22 0 51 119 18 86 2.92e-30 113
Msa0684500 AT5G40350.2 63.514 74 27 0 46 119 3 76 4.69e-30 112
Msa0684500 AT1G56650.1 54.808 104 47 0 15 118 8 111 6.87e-30 114
Msa0684500 AT1G66390.1 54.808 104 47 0 15 118 8 111 3.75e-29 112
Msa0684500 AT3G46130.3 57.317 82 35 0 47 128 9 90 7.01e-29 111
Msa0684500 AT5G59780.2 58.025 81 34 0 48 128 20 100 1.11e-28 110
Msa0684500 AT3G46130.4 58.025 81 34 0 48 128 20 100 1.46e-28 110
Msa0684500 AT3G53200.2 64.789 71 25 0 48 118 9 79 3.25e-27 106
Msa0684500 AT5G11050.1 28.899 218 143 3 17 232 105 312 9.36e-27 109
Msa0684500 AT4G18770.1 41.135 141 79 3 13 152 213 350 3.67e-26 108
Msa0684500 AT5G67300.1 42.063 126 63 2 17 142 6 121 7.45e-26 105
Msa0684500 AT3G50060.1 40.625 128 75 1 17 144 6 132 1.23e-25 104
Msa0684500 AT5G40360.1 40.678 118 68 2 10 127 151 266 1.77e-25 105
Msa0684500 AT3G55730.1 38.922 167 92 4 17 181 56 214 1.99e-25 105
Msa0684500 AT3G09230.1 43.284 134 71 2 8 137 46 178 2.06e-25 105
Msa0684500 AT2G39880.1 49.107 112 55 2 7 118 41 150 6.02e-25 103
Msa0684500 AT4G37260.1 46.789 109 57 1 10 118 6 113 7.63e-25 102
Msa0684500 AT1G69560.1 31.050 219 129 6 13 217 103 313 1.01e-24 102
Msa0684500 AT3G27785.1 42.857 119 63 3 1 118 175 289 1.09e-24 103
Msa0684500 AT5G02320.3 42.623 122 67 2 12 131 62 182 1.11e-24 104
Msa0684500 AT5G02320.1 42.623 122 67 2 12 131 122 242 1.31e-24 104
Msa0684500 AT5G02320.2 42.623 122 67 2 12 131 122 242 1.31e-24 104
Msa0684500 AT1G22640.3 65.714 70 22 1 61 130 1 68 1.53e-24 99.4
Msa0684500 AT1G69560.2 30.769 221 131 6 11 217 117 329 1.54e-24 102
Msa0684500 AT3G09370.2 45.794 107 57 1 12 118 130 235 7.01e-24 102
Msa0684500 AT3G09370.1 45.794 107 57 1 12 118 125 230 7.19e-24 102
Msa0684500 AT5G58850.1 40.602 133 73 3 7 134 94 225 9.09e-24 101
Msa0684500 AT3G09370.3 45.794 107 57 1 12 118 138 243 9.22e-24 102
Msa0684500 AT5G11510.2 29.643 280 144 9 12 273 76 320 1.14e-23 102
Msa0684500 AT5G11510.3 29.643 280 144 9 12 273 76 320 1.19e-23 102
Msa0684500 AT5G11510.1 29.643 280 144 9 12 273 76 320 1.19e-23 102
Msa0684500 AT5G11510.4 29.643 280 144 9 12 273 76 320 1.19e-23 102
Msa0684500 AT5G11510.5 29.643 280 144 9 12 273 76 320 1.48e-23 102
Msa0684500 AT2G23290.1 47.059 102 53 1 17 118 13 113 1.67e-23 99.0
Msa0684500 AT3G23250.2 65.574 61 21 0 61 121 1 61 2.91e-23 96.7
Msa0684500 AT1G17950.1 43.925 107 59 1 17 123 5 110 4.17e-23 96.7
Msa0684500 AT1G26780.1 44.144 111 59 2 15 124 96 204 6.26e-23 96.7
Msa0684500 AT1G26780.2 44.144 111 59 2 15 124 96 204 6.61e-23 98.2
Msa0684500 AT1G66380.3 50.526 95 39 1 47 133 7 101 8.78e-23 91.7
Msa0684500 AT2G25230.1 42.991 107 59 2 20 126 29 133 8.79e-23 95.5
Msa0684500 AT4G32730.5 41.667 108 62 1 12 119 82 188 7.17e-22 97.1
Msa0684500 AT4G32730.4 41.667 108 62 1 12 119 82 188 7.17e-22 97.1
Msa0684500 AT4G32730.3 41.667 108 62 1 12 119 82 188 7.17e-22 97.1
Msa0684500 AT4G32730.2 41.667 108 62 1 12 119 82 188 7.17e-22 97.1
Msa0684500 AT4G32730.1 41.667 108 62 1 12 119 82 188 7.79e-22 97.1
Msa0684500 AT3G29020.1 36.719 128 79 2 17 144 65 190 1.78e-21 91.7
Msa0684500 AT3G29020.2 36.719 128 79 2 17 144 67 192 2.94e-21 92.8
Msa0684500 AT5G14750.4 62.712 59 22 0 61 119 1 59 3.47e-21 88.6
Msa0684500 AT5G14750.2 62.712 59 22 0 61 119 1 59 3.47e-21 88.6
Msa0684500 AT1G73410.1 43.925 107 59 1 17 123 6 111 3.89e-21 90.9
Msa0684500 AT5G17800.1 39.823 113 67 1 8 120 84 195 5.50e-21 92.0
Msa0684500 AT4G33450.1 38.393 112 68 1 16 127 18 128 6.91e-21 90.5
Msa0684500 AT1G73410.2 43.925 107 59 1 17 123 6 111 1.02e-20 89.0
Msa0684500 AT1G71030.2 55.072 69 31 0 54 122 5 73 5.01e-20 86.7
Msa0684500 AT1G71030.1 55.072 69 31 0 54 122 19 87 7.67e-20 86.3
Msa0684500 AT4G00540.2 41.739 115 61 3 15 125 101 213 5.36e-19 87.4
Msa0684500 AT1G18960.1 39.815 108 58 4 17 122 10 112 8.18e-19 85.9
Msa0684500 AT4G00540.1 41.739 115 61 3 15 125 99 211 9.10e-19 87.0
Msa0684500 AT5G40430.1 37.302 126 74 4 3 126 38 160 1.16e-18 84.3
Msa0684500 AT2G02820.3 40.196 102 60 1 20 121 33 133 1.95e-18 85.1
Msa0684500 AT2G02820.1 40.196 102 60 1 20 121 33 133 2.30e-18 85.9
Msa0684500 AT2G02820.2 40.196 102 60 1 20 121 33 133 3.25e-18 85.5
Msa0684500 AT1G66380.2 53.846 78 36 0 15 92 8 85 3.98e-18 79.3
Msa0684500 AT2G37630.1 38.017 121 72 2 20 137 7 127 7.07e-17 80.9
Msa0684500 AT5G39700.1 33.088 136 84 2 13 148 52 180 4.24e-16 75.9
Msa0684500 AT1G14350.2 38.235 102 62 1 20 121 28 128 5.45e-16 79.0
Msa0684500 AT1G14350.1 38.235 102 62 1 20 121 28 128 5.45e-16 79.0
Msa0684500 AT5G59780.1 50.000 56 28 0 73 128 1 56 6.93e-14 69.3
Msa0684500 AT3G46130.2 50.000 56 28 0 73 128 1 56 1.12e-13 69.3
Msa0684500 AT4G25560.2 63.462 52 18 1 73 123 2 53 3.34e-13 68.2
Msa0684500 AT1G74650.3 64.286 42 15 0 81 122 2 43 7.88e-12 65.1
Msa0684500 AT5G61420.1 39.175 97 58 1 84 180 2 97 1.36e-11 64.7
Msa0684500 AT1G14350.3 44.444 63 35 0 59 121 23 85 1.40e-11 65.5
Msa0684500 AT1G14350.4 44.444 63 35 0 59 121 23 85 1.40e-11 65.5
Msa0684500 AT3G28910.2 54.348 46 21 0 81 126 2 47 2.23e-11 63.5

Find 71 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGTTACAACATTATTT+TGG 0.086652 4_4:+47883685 Msa0684500:three_prime_UTR
TTGCTTATTAATAAAGTTTC+TGG 0.141511 4_4:+47883832 Msa0684500:three_prime_UTR
ATCCATTTGCATTCCCTTCT+TGG 0.153405 4_4:+47881072 Msa0684500:CDS
TGACAGCAAAAGTTTCTATT+TGG 0.177929 4_4:+47883008 Msa0684500:CDS
CCCATGTTATGGTCTTTGTT+AGG 0.202900 4_4:-47882799 None:intergenic
AGTATAGAAGTTCATATCTT+AGG 0.256763 4_4:+47883726 Msa0684500:three_prime_UTR
ACAATGAAATCAAGAACTTT+TGG 0.281358 4_4:+47882698 Msa0684500:CDS
GGGAGTGTAAATATTATTAA+TGG 0.283826 4_4:+47883042 Msa0684500:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.287022 4_4:-47882685 None:intergenic
GAAAACACTTTGTTGAATCT+TGG 0.294588 4_4:-47883388 None:intergenic
AATACCATTATGTCAGGTTC+TGG 0.332436 4_4:+47882931 Msa0684500:CDS
TGCATTCCCTTCTTGGAAAC+AGG 0.336319 4_4:+47881079 Msa0684500:CDS
GAGATTTATCTGTTGGAGAT+TGG 0.356328 4_4:+47883301 Msa0684500:CDS
CAAATTGCGGCGCGCTTACC+TGG 0.371371 4_4:+47882667 Msa0684500:CDS
CCATGTTATGGTCTTTGTTA+GGG 0.387108 4_4:-47882798 None:intergenic
ATCTGTTGGAGATTGGGATT+TGG 0.391051 4_4:+47883308 Msa0684500:CDS
AGATTTATCTGTTGGAGATT+GGG 0.394773 4_4:+47883302 Msa0684500:CDS
AATATTATTAATGGTGTAGA+AGG 0.397124 4_4:+47883051 Msa0684500:CDS
TAAATAGTGGACAAGGTTGT+TGG 0.399936 4_4:+47880926 Msa0684500:CDS
TTATAAAACCTCCCATGTTA+TGG 0.404725 4_4:-47882810 None:intergenic
GAGGTGGAGAATTTATTTCA+TGG 0.406594 4_4:+47883279 Msa0684500:CDS
CACAGAAAAGTTATTATATG+TGG 0.414549 4_4:+47883776 Msa0684500:three_prime_UTR
ACACCCAGAACCTGACATAA+TGG 0.416433 4_4:-47882935 None:intergenic
GAGGATTCATCGCTTGCGTT+TGG 0.417571 4_4:-47882769 None:intergenic
ATACAGTACAGGGATTAATA+AGG 0.423386 4_4:+47883458 Msa0684500:three_prime_UTR
TTTGGGATGGTTTATTTGGA+GGG 0.439722 4_4:+47883703 Msa0684500:three_prime_UTR
TTTCATGGAGATTTATCTGT+TGG 0.445436 4_4:+47883294 Msa0684500:CDS
ATAAGCTTCTCATCTTCCTC+TGG 0.451621 4_4:-47880892 None:intergenic
AACAACTCTAAGCTTAGAAA+AGG 0.456430 4_4:+47880859 Msa0684500:CDS
ATTATGTCAGGTTCTGGGTG+TGG 0.459963 4_4:+47882937 Msa0684500:CDS
AGGAAGCCAGAGATTGCATC+TGG 0.463580 4_4:+47880832 Msa0684500:CDS
ATACCATTATGTCAGGTTCT+GGG 0.465861 4_4:+47882932 Msa0684500:CDS
AGTTACACATTAACTTTATG+TGG 0.475439 4_4:+47883656 Msa0684500:three_prime_UTR
TTCCAAGAAGGGAATGCAAA+TGG 0.481023 4_4:-47881074 None:intergenic
TGGTGTAGAAGGAGATGAGA+TGG 0.483693 4_4:+47883062 Msa0684500:CDS
ATGAACTACATGTTAAATAG+TGG 0.487097 4_4:+47880913 Msa0684500:CDS
CCCAAAATAATGTTGTAACA+TGG 0.501705 4_4:-47883686 None:intergenic
TTCTTCAATAATAGTACTAC+AGG 0.501923 4_4:+47882961 Msa0684500:CDS
CCAAAATAATGTTGTAACAT+GGG 0.508155 4_4:-47883685 None:intergenic
GAAAAGTTATTATATGTGGT+TGG 0.509703 4_4:+47883780 Msa0684500:three_prime_UTR
AGTGATGTTGCTAGAAATGC+TGG 0.514684 4_4:+47880949 Msa0684500:CDS
AATGCACCACGTTTAAGATC+TGG 0.525169 4_4:-47881024 None:intergenic
CAAAATAATGTTGTAACATG+GGG 0.530136 4_4:-47883684 None:intergenic
AATGCATGCAATGGAGAAGA+TGG 0.536091 4_4:+47883156 Msa0684500:CDS
TCTACATCAAGGTGAGGGTG+AGG 0.553196 4_4:+47880792 None:intergenic
TCAAAGATGGTCTCAAATTG+CGG 0.554550 4_4:+47882654 Msa0684500:intron
AAGTGGACCTGTTTCCAAGA+AGG 0.565199 4_4:-47881086 None:intergenic
AGTGGACCTGTTTCCAAGAA+GGG 0.574708 4_4:-47881085 None:intergenic
GGAGATGAAGTATTGAACAT+AGG 0.583399 4_4:-47882877 None:intergenic
CTAAGCTTAGAAAAGGATTG+TGG 0.585725 4_4:+47880866 Msa0684500:CDS
CTACATCAAGGTGAGGGTGA+GGG 0.586014 4_4:+47880793 None:intergenic
ATGATATGTTCTTCTTCCTG+TGG 0.588188 4_4:-47881051 None:intergenic
CCCTAACAAAGACCATAACA+TGG 0.603188 4_4:+47882798 Msa0684500:CDS
TAGAGCTGATCATGATGAGG+TGG 0.613651 4_4:+47883263 Msa0684500:CDS
CTATTAACACTTTCTAGAGG+AGG 0.613987 4_4:-47883099 None:intergenic
GTACTATTAACACTTTCTAG+AGG 0.616426 4_4:-47883102 None:intergenic
AATGCTGGATTGCAAAGATG+TGG 0.617901 4_4:+47880964 Msa0684500:CDS
GTCTTTGTTAGGGTCGTACG+AGG 0.620442 4_4:-47882788 None:intergenic
ACGTGGTGCATTCTCACCAC+AGG 0.629748 4_4:+47881035 Msa0684500:CDS
TAAGATGGATCAATTACTTG+AGG 0.633708 4_4:+47881001 Msa0684500:CDS
AAAAGGATTGTGGTCACCAG+AGG 0.635321 4_4:+47880876 Msa0684500:CDS
AAAATGGAGAATGCATGCAA+TGG 0.638345 4_4:+47883147 Msa0684500:CDS
AGTACAGGGATTAATAAGGT+AGG 0.643047 4_4:+47883462 Msa0684500:three_prime_UTR
AAAATAATGTTGTAACATGG+GGG 0.657543 4_4:-47883683 None:intergenic
TACATGTTAAATAGTGGACA+AGG 0.672810 4_4:+47880919 Msa0684500:CDS
AAATAATGTTGTAACATGGG+GGG 0.672902 4_4:-47883682 None:intergenic
AACAAAGACCATAACATGGG+AGG 0.678788 4_4:+47882802 Msa0684500:CDS
CCTAACAAAGACCATAACAT+GGG 0.690044 4_4:+47882799 Msa0684500:CDS
AGGGATTCAATAGTACAATG+AGG 0.697652 4_4:+47880812 Msa0684500:exon
TTGAGGCCAGATCTTAAACG+TGG 0.709043 4_4:+47881018 Msa0684500:CDS
AAATAGAGCTGATCATGATG+AGG 0.716489 4_4:+47883260 Msa0684500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATAATAATAAAAAA+AGG + chr4_4:47881407-47881426 Msa0684500:intron 0.0%
!!! ATTTTATAATAATAAAAAAA+GGG + chr4_4:47881408-47881427 Msa0684500:intron 0.0%
!!! TTCATCATTTTATTAAAAAT+TGG - chr4_4:47881389-47881408 None:intergenic 10.0%
!! TTCTCAAATTAAGATAAATT+TGG - chr4_4:47881207-47881226 None:intergenic 15.0%
!!! AATTCTAAAAAATAGTCTAA+AGG - chr4_4:47881484-47881503 None:intergenic 15.0%
!! TCATAAATTAAAACATGAAA+AGG + chr4_4:47881853-47881872 Msa0684500:intron 15.0%
!! AATTTATTAACTATTACAAG+AGG + chr4_4:47882454-47882473 Msa0684500:intron 15.0%
!!! CAAAAACAAAATTATTTTTG+TGG + chr4_4:47882581-47882600 Msa0684500:intron 15.0%
!!! GATAAATAAATTGATGATCT+AGG - chr4_4:47881122-47881141 None:intergenic 20.0%
!! ATATTATACATACTCATGTT+TGG - chr4_4:47881333-47881352 None:intergenic 20.0%
!! AAACATGAGTATGTATAATA+TGG + chr4_4:47881332-47881351 Msa0684500:intron 20.0%
!!! CATCTTTAAAACATTTTTTG+AGG - chr4_4:47881359-47881378 None:intergenic 20.0%
!!! CTCAAAAAATGTTTTAAAGA+TGG + chr4_4:47881357-47881376 Msa0684500:intron 20.0%
!!! TACATAGCTATTTTTTTCAT+GGG - chr4_4:47881573-47881592 None:intergenic 20.0%
!!! ATACATAGCTATTTTTTTCA+TGG - chr4_4:47881574-47881593 None:intergenic 20.0%
!! ATACACAACAATATAGTATA+TGG + chr4_4:47881661-47881680 Msa0684500:intron 20.0%
!! TTCTATATCATAAATGATTC+AGG - chr4_4:47881740-47881759 None:intergenic 20.0%
!! GTCTAAAAAATCTAAATCTT+TGG - chr4_4:47881829-47881848 None:intergenic 20.0%
!! ACAACAAATTTAAATCACTT+GGG - chr4_4:47881963-47881982 None:intergenic 20.0%
!! AACAACAAATTTAAATCACT+TGG - chr4_4:47881964-47881983 None:intergenic 20.0%
!! ACAATTGAAAAACAACATAT+AGG + chr4_4:47882209-47882228 Msa0684500:intron 20.0%
!! TTTACTGTCTATTTCATAAA+TGG + chr4_4:47882409-47882428 Msa0684500:intron 20.0%
!! TATAAGCATAACAAGAAAAT+AGG - chr4_4:47882509-47882528 None:intergenic 20.0%
!! AATATTATTAATGGTGTAGA+AGG + chr4_4:47883051-47883070 Msa0684500:CDS 20.0%
!!! ATATAAAGGAGTGTAAAAAA+TGG - chr4_4:47883422-47883441 None:intergenic 20.0%
!! CAGCAAAAATACAAATATAA+AGG - chr4_4:47883436-47883455 None:intergenic 20.0%
! ATGAACTACATGTTAAATAG+TGG + chr4_4:47880913-47880932 Msa0684500:CDS 25.0%
! CCAATATATGGAATCAAATT+TGG - chr4_4:47881154-47881173 None:intergenic 25.0%
! CCAAATTTGATTCCATATAT+TGG + chr4_4:47881151-47881170 Msa0684500:intron 25.0%
! TAAATTAAGGAGCCAATATA+TGG - chr4_4:47881166-47881185 None:intergenic 25.0%
!!! GAAGATAACCATTTTTACAT+TGG + chr4_4:47881224-47881243 Msa0684500:intron 25.0%
! TAACTATTACAAGAGGAAAT+AGG + chr4_4:47882461-47882480 Msa0684500:intron 25.0%
!! TTTTGCTTCATTTTCAAAGA+TGG + chr4_4:47882641-47882660 Msa0684500:intron 25.0%
!! ACAATGAAATCAAGAACTTT+TGG + chr4_4:47882698-47882717 Msa0684500:CDS 25.0%
! TTCTTCAATAATAGTACTAC+AGG + chr4_4:47882961-47882980 Msa0684500:CDS 25.0%
!!! TTCTATTTGGAAAAAGTGTT+TGG + chr4_4:47883021-47883040 Msa0684500:CDS 25.0%
!!! TCTATTTGGAAAAAGTGTTT+GGG + chr4_4:47883022-47883041 Msa0684500:CDS 25.0%
!! GGGAGTGTAAATATTATTAA+TGG + chr4_4:47883042-47883061 Msa0684500:CDS 25.0%
! TTCTGAACATAGTGTAAAAA+TGG + chr4_4:47883131-47883150 Msa0684500:CDS 25.0%
! CAGTTTGAAAAATCAAGAAA+TGG - chr4_4:47883363-47883382 None:intergenic 25.0%
! AGTTACACATTAACTTTATG+TGG + chr4_4:47883656-47883675 Msa0684500:three_prime_UTR 25.0%
! AAAATAATGTTGTAACATGG+GGG - chr4_4:47883686-47883705 None:intergenic 25.0%
! CAAAATAATGTTGTAACATG+GGG - chr4_4:47883687-47883706 None:intergenic 25.0%
! CCAAAATAATGTTGTAACAT+GGG - chr4_4:47883688-47883707 None:intergenic 25.0%
!! CCATGTTACAACATTATTTT+GGG + chr4_4:47883686-47883705 Msa0684500:three_prime_UTR 25.0%
!!! TTATTTTGGGATGGTTTATT+TGG + chr4_4:47883699-47883718 Msa0684500:three_prime_UTR 25.0%
! AGTATAGAAGTTCATATCTT+AGG + chr4_4:47883726-47883745 Msa0684500:three_prime_UTR 25.0%
! CACAGAAAAGTTATTATATG+TGG + chr4_4:47883776-47883795 Msa0684500:three_prime_UTR 25.0%
! GAAAAGTTATTATATGTGGT+TGG + chr4_4:47883780-47883799 Msa0684500:three_prime_UTR 25.0%
AACAACTCTAAGCTTAGAAA+AGG + chr4_4:47880859-47880878 Msa0684500:CDS 30.0%
!! TACATGTTAAATAGTGGACA+AGG + chr4_4:47880919-47880938 Msa0684500:CDS 30.0%
AAAGATGTGGAAAAAGTTGT+AGG + chr4_4:47880977-47880996 Msa0684500:CDS 30.0%
TAAGATGGATCAATTACTTG+AGG + chr4_4:47881001-47881020 Msa0684500:CDS 30.0%
TTAAGGAGCCAATGTAAAAA+TGG - chr4_4:47881235-47881254 None:intergenic 30.0%
CTCCTTAATTCACTATTTAG+TGG + chr4_4:47881247-47881266 Msa0684500:intron 30.0%
GTCCACTAAATAGTGAATTA+AGG - chr4_4:47881252-47881271 None:intergenic 30.0%
GATAACTCGAGAGAAAAAAA+TGG - chr4_4:47881520-47881539 None:intergenic 30.0%
!!! ATTTTGAAACAGTTGTGCTA+TGG + chr4_4:47881594-47881613 Msa0684500:intron 30.0%
AAATTGTCTGTCTCTCTAAA+TGG - chr4_4:47882024-47882043 None:intergenic 30.0%
! GAGACAGACAATTTTGTAAA+AGG + chr4_4:47882030-47882049 Msa0684500:intron 30.0%
AATTAGTTGTGTCGTATCTT+AGG - chr4_4:47882091-47882110 None:intergenic 30.0%
! TTGTACTTTTGTCTTCTACA+AGG - chr4_4:47882193-47882212 None:intergenic 30.0%
ACTGTGATTTCGTCTTTATT+TGG + chr4_4:47882233-47882252 Msa0684500:intron 30.0%
TTTGAACAATACACGTAGTA+TGG - chr4_4:47882278-47882297 None:intergenic 30.0%
TTATAAAACCTCCCATGTTA+TGG - chr4_4:47882813-47882832 None:intergenic 30.0%
! AAAACTGTGTTTTGCATTGT+TGG - chr4_4:47882910-47882929 None:intergenic 30.0%
! GTTTTCAATACCATTATGTC+AGG + chr4_4:47882925-47882944 Msa0684500:CDS 30.0%
TGACAGCAAAAGTTTCTATT+TGG + chr4_4:47883008-47883027 Msa0684500:CDS 30.0%
GTACTATTAACACTTTCTAG+AGG - chr4_4:47883105-47883124 None:intergenic 30.0%
TTTCATGGAGATTTATCTGT+TGG + chr4_4:47883294-47883313 Msa0684500:CDS 30.0%
AGATTTATCTGTTGGAGATT+GGG + chr4_4:47883302-47883321 Msa0684500:CDS 30.0%
GAAAACACTTTGTTGAATCT+TGG - chr4_4:47883391-47883410 None:intergenic 30.0%
!!! TTTTTGCTGTTATACAGTAC+AGG + chr4_4:47883447-47883466 Msa0684500:three_prime_UTR 30.0%
!!! TTTTGCTGTTATACAGTACA+GGG + chr4_4:47883448-47883467 Msa0684500:three_prime_UTR 30.0%
ATACAGTACAGGGATTAATA+AGG + chr4_4:47883458-47883477 Msa0684500:three_prime_UTR 30.0%
! TAACTACAGTAGTTTTCTGT+GGG - chr4_4:47883564-47883583 None:intergenic 30.0%
! TTAACTACAGTAGTTTTCTG+TGG - chr4_4:47883565-47883584 None:intergenic 30.0%
AAATAATGTTGTAACATGGG+GGG - chr4_4:47883685-47883704 None:intergenic 30.0%
! CCCATGTTACAACATTATTT+TGG + chr4_4:47883685-47883704 Msa0684500:three_prime_UTR 30.0%
CCCAAAATAATGTTGTAACA+TGG - chr4_4:47883689-47883708 None:intergenic 30.0%
!!! GTTACAACATTATTTTGGGA+TGG + chr4_4:47883690-47883709 Msa0684500:three_prime_UTR 30.0%
! CATATCTTAGGTTTTCAGAT+TGG + chr4_4:47883738-47883757 Msa0684500:three_prime_UTR 30.0%
AGGGATTCAATAGTACAATG+AGG + chr4_4:47880812-47880831 Msa0684500:exon 35.0%
!!! TTTTTTCCAGATGCAATCTC+TGG - chr4_4:47880841-47880860 None:intergenic 35.0%
CTAAGCTTAGAAAAGGATTG+TGG + chr4_4:47880866-47880885 Msa0684500:CDS 35.0%
!! TAAATAGTGGACAAGGTTGT+TGG + chr4_4:47880926-47880945 Msa0684500:CDS 35.0%
GAAAAAGTTGTAGGCTAAGA+TGG + chr4_4:47880986-47881005 Msa0684500:CDS 35.0%
ATGATATGTTCTTCTTCCTG+TGG - chr4_4:47881054-47881073 None:intergenic 35.0%
ATCTAGGTAGAAAAGTGAAG+TGG - chr4_4:47881106-47881125 None:intergenic 35.0%
TAGATTTCACCTCTTGATGT+GGG - chr4_4:47881546-47881565 None:intergenic 35.0%
ATAGATTTCACCTCTTGATG+TGG - chr4_4:47881547-47881566 None:intergenic 35.0%
AAAAGAATGCATGCTTTGCA+TGG - chr4_4:47882317-47882336 None:intergenic 35.0%
ACAAGAGGAAATAGGTCTAA+AGG + chr4_4:47882469-47882488 Msa0684500:intron 35.0%
TCAAAGATGGTCTCAAATTG+CGG + chr4_4:47882654-47882673 Msa0684500:intron 35.0%
ATTTCATTGTCTGTTCTTCC+AGG - chr4_4:47882688-47882707 None:intergenic 35.0%
CCATGTTATGGTCTTTGTTA+GGG - chr4_4:47882801-47882820 None:intergenic 35.0%
CCTAACAAAGACCATAACAT+GGG + chr4_4:47882799-47882818 Msa0684500:CDS 35.0%
!! GGAGATGAAGTATTGAACAT+AGG - chr4_4:47882880-47882899 None:intergenic 35.0%
AATACCATTATGTCAGGTTC+TGG + chr4_4:47882931-47882950 Msa0684500:CDS 35.0%
ATACCATTATGTCAGGTTCT+GGG + chr4_4:47882932-47882951 Msa0684500:CDS 35.0%
! CTATTAACACTTTCTAGAGG+AGG - chr4_4:47883102-47883121 None:intergenic 35.0%
AAAATGGAGAATGCATGCAA+TGG + chr4_4:47883147-47883166 Msa0684500:CDS 35.0%
AAATAGAGCTGATCATGATG+AGG + chr4_4:47883260-47883279 Msa0684500:CDS 35.0%
GAGGTGGAGAATTTATTTCA+TGG + chr4_4:47883279-47883298 Msa0684500:CDS 35.0%
GAGATTTATCTGTTGGAGAT+TGG + chr4_4:47883301-47883320 Msa0684500:CDS 35.0%
AGTACAGGGATTAATAAGGT+AGG + chr4_4:47883462-47883481 Msa0684500:three_prime_UTR 35.0%
!!! TTTTGGGATGGTTTATTTGG+AGG + chr4_4:47883702-47883721 Msa0684500:three_prime_UTR 35.0%
! TTTGGGATGGTTTATTTGGA+GGG + chr4_4:47883703-47883722 Msa0684500:three_prime_UTR 35.0%
ATAAGCTTCTCATCTTCCTC+TGG - chr4_4:47880895-47880914 None:intergenic 40.0%
AGTGATGTTGCTAGAAATGC+TGG + chr4_4:47880949-47880968 Msa0684500:CDS 40.0%
AATGCTGGATTGCAAAGATG+TGG + chr4_4:47880964-47880983 Msa0684500:CDS 40.0%
! AATGCACCACGTTTAAGATC+TGG - chr4_4:47881027-47881046 None:intergenic 40.0%
ATCCATTTGCATTCCCTTCT+TGG + chr4_4:47881072-47881091 Msa0684500:CDS 40.0%
TTCCAAGAAGGGAATGCAAA+TGG - chr4_4:47881077-47881096 None:intergenic 40.0%
TAAGCAGATCAAGACTTGTG+TGG + chr4_4:47881797-47881816 Msa0684500:intron 40.0%
! TTGTGTCGTATCTTAGGTTG+AGG - chr4_4:47882085-47882104 None:intergenic 40.0%
CCCTAACAAAGACCATAACA+TGG + chr4_4:47882798-47882817 Msa0684500:CDS 40.0%
CCCATGTTATGGTCTTTGTT+AGG - chr4_4:47882802-47882821 None:intergenic 40.0%
AACAAAGACCATAACATGGG+AGG + chr4_4:47882802-47882821 Msa0684500:CDS 40.0%
!!! TTTTGCATTGTTGGTGGTGA+TGG - chr4_4:47882901-47882920 None:intergenic 40.0%
! ACTGTGTTTTGCATTGTTGG+TGG - chr4_4:47882907-47882926 None:intergenic 40.0%
AATGCATGCAATGGAGAAGA+TGG + chr4_4:47883156-47883175 Msa0684500:CDS 40.0%
ATCTGTTGGAGATTGGGATT+TGG + chr4_4:47883308-47883327 Msa0684500:CDS 40.0%
AAAAGGATTGTGGTCACCAG+AGG + chr4_4:47880876-47880895 Msa0684500:CDS 45.0%
TTGAGGCCAGATCTTAAACG+TGG + chr4_4:47881018-47881037 Msa0684500:CDS 45.0%
TGCATTCCCTTCTTGGAAAC+AGG + chr4_4:47881079-47881098 Msa0684500:CDS 45.0%
AGTGGACCTGTTTCCAAGAA+GGG - chr4_4:47881088-47881107 None:intergenic 45.0%
AAGTGGACCTGTTTCCAAGA+AGG - chr4_4:47881089-47881108 None:intergenic 45.0%
GTTATCTCACCCACATCAAG+AGG + chr4_4:47881534-47881553 Msa0684500:intron 45.0%
!! TGTCGTATCTTAGGTTGAGG+AGG - chr4_4:47882082-47882101 None:intergenic 45.0%
ACACCCAGAACCTGACATAA+TGG - chr4_4:47882938-47882957 None:intergenic 45.0%
!! ATTATGTCAGGTTCTGGGTG+TGG + chr4_4:47882937-47882956 Msa0684500:CDS 45.0%
TGGTGTAGAAGGAGATGAGA+TGG + chr4_4:47883062-47883081 Msa0684500:CDS 45.0%
TAGAGCTGATCATGATGAGG+TGG + chr4_4:47883263-47883282 Msa0684500:CDS 45.0%
!! ATAATAAGATAAATAAATTA+AGG - chr4_4:47881179-47881198 None:intergenic 5.0%
!! TAATTAAAAAATTACATTAA+AGG - chr4_4:47882546-47882565 None:intergenic 5.0%
AGGAAGCCAGAGATTGCATC+TGG + chr4_4:47880832-47880851 Msa0684500:CDS 50.0%
CTGATGTCAAACACGCTGTC+AGG - chr4_4:47881632-47881651 None:intergenic 50.0%
CTGACAGCGTGTTTGACATC+AGG + chr4_4:47881630-47881649 Msa0684500:intron 50.0%
GAGGATTCATCGCTTGCGTT+TGG - chr4_4:47882772-47882791 None:intergenic 50.0%
GTCTTTGTTAGGGTCGTACG+AGG - chr4_4:47882791-47882810 None:intergenic 50.0%
ACGTGGTGCATTCTCACCAC+AGG + chr4_4:47881035-47881054 Msa0684500:CDS 55.0%
CAAATTGCGGCGCGCTTACC+TGG + chr4_4:47882667-47882686 Msa0684500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47880803 47883853 47880803 ID=Msa0684500;Name=Msa0684500
chr4_4 mRNA 47880803 47883853 47880803 ID=Msa0684500-mRNA-1;Parent=Msa0684500;Name=Msa0684500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=26|1|1|1|1|1|2|470|331
chr4_4 exon 47880803 47881100 47880803 ID=Msa0684500-mRNA-1:exon:11802;Parent=Msa0684500-mRNA-1
chr4_4 exon 47882660 47883853 47882660 ID=Msa0684500-mRNA-1:exon:11803;Parent=Msa0684500-mRNA-1
chr4_4 five_prime_UTR 47880803 47880828 47880803 ID=Msa0684500-mRNA-1:five_prime_utr;Parent=Msa0684500-mRNA-1
chr4_4 CDS 47880829 47881100 47880829 ID=Msa0684500-mRNA-1:cds;Parent=Msa0684500-mRNA-1
chr4_4 CDS 47882660 47883383 47882660 ID=Msa0684500-mRNA-1:cds;Parent=Msa0684500-mRNA-1
chr4_4 three_prime_UTR 47883384 47883853 47883384 ID=Msa0684500-mRNA-1:three_prime_utr;Parent=Msa0684500-mRNA-1
Gene Sequence

>Msa0684500

ATGAGGAAGCCAGAGATTGCATCTGGAAAAAACAACTCTAAGCTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTACATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCAGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCGCGCTTACCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCACCAAACGCAAGCGATGAATCCTCGTACGACCCTAACAAAGACCATAACATGGGAGGTTTTATAACTTCTTCAACACAAGATCAACAACATATTGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAATACCATTATGTCAGGTTCTGGGTGTGGATTCTTCAATAATAGTACTACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAAGTGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGAGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAAAGTGTTAATAGTACTATTACTTCTGAACATAGTGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAAGAGAAGTGAAAATAGAGCTGATCATGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTTGGAGATTGGGATTTGGAAGATTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA
Protein sequence

>Msa0684500

MRKPEIASGKNNSKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNMGGFITSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKVFGSVNIINGVEGDEMEIYNVPPLESVNSTITSEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSKRSENRADHDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN*