AlfalfaGEDB | Msa0387000

M. sativa cultivar zhongmu-4 / Msa0387000

KEGG: K21630
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387000	XP_039688142.1	93.923	181	7	1	4	180	121	301	2.77e-121	354

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387000	sp\|O65515\|GATA7_ARATH	59.167	120	40	2	47	161	116	231	4.24e-41	141

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387000	A0A396J3N4	93.923	181	7	1	4	180	121	301	1.33e-121	354

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TFs/TRs:

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Gene ID	Type	Classification
Msa0387000	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0387000	Msa0475910	0.861411	1.045850e-63	-8.615850e-47
Msa0387000	Msa0523930	0.908998	9.252805e-82	-8.615850e-47
Msa0387000	Msa1415360	0.849776	2.602744e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387000	MtrunA17_Chr3g0145121	93.923	181	7	1	4	180	121	301	2.55e-125	354
Msa0387000	MtrunA17_Chr4g0035891	57.865	178	57	4	2	179	136	295	3.99e-56	178
Msa0387000	MtrunA17_Chr8g0372291	67.347	98	28	2	73	170	198	291	2.75e-39	135
Msa0387000	MtrunA17_Chr5g0404981	83.333	72	12	0	94	165	300	371	4.13e-39	137
Msa0387000	MtrunA17_Chr1g0169431	75.000	72	18	0	92	163	170	241	7.99e-35	122
Msa0387000	MtrunA17_Chr6g0461591	66.667	84	26	1	77	158	173	256	2.37e-33	119
Msa0387000	MtrunA17_Chr1g0213161	54.128	109	48	1	70	176	126	234	6.39e-33	117
Msa0387000	MtrunA17_Chr1g0199671	76.923	65	15	0	94	158	242	306	8.16e-33	119
Msa0387000	MtrunA17_Chr2g0326771	68.493	73	23	0	86	158	208	280	1.11e-32	118
Msa0387000	MtrunA17_Chr1g0146231	57.143	105	44	1	61	164	200	304	4.13e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387000	AT4G36240.1	59.167	120	40	2	47	161	116	231	4.31e-42	141
Msa0387000	AT5G66320.2	63.063	111	29	2	53	161	216	316	2.73e-40	139
Msa0387000	AT5G66320.1	63.063	111	29	2	53	161	216	316	2.73e-40	139
Msa0387000	AT3G51080.1	70.000	90	23	2	94	179	221	310	4.92e-37	130
Msa0387000	AT5G25830.1	62.887	97	31	1	67	163	197	288	2.44e-34	124
Msa0387000	AT4G34680.1	74.359	78	19	1	92	169	178	254	3.51e-34	122
Msa0387000	AT4G34680.2	74.359	78	19	1	92	169	178	254	3.51e-34	122
Msa0387000	AT3G60530.1	52.713	129	52	3	36	161	103	225	2.94e-33	119
Msa0387000	AT4G32890.1	47.143	140	65	3	30	163	130	266	6.87e-33	119
Msa0387000	AT3G24050.1	72.464	69	19	0	92	160	192	260	2.63e-32	117

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Find 97 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAACCCTCGCGTTT+GGG	0.407277	3_1:+90842090	Msa0387000:CDS
AAAACCCTTTGTAACGCGTG+CGG	0.650760	3_1:+90842286	Msa0387000:CDS
AAAAGTAACCCGGTTCAAAC+CGG	0.417176	3_1:-90842520	None:intergenic
AAACCCTTTGTAACGCGTGC+GGG	0.468327	3_1:+90842287	Msa0387000:CDS
AAAGTAACCCGGTTCAAACC+GGG	0.580211	3_1:-90842519	None:intergenic
AACCCCGCACGCGTTACAAA+GGG	0.526943	3_1:-90842290	None:intergenic
AACCCTTTGTAACGCGTGCG+GGG	0.556096	3_1:+90842288	Msa0387000:CDS
AACGGACCGGTTCTCCACTG+CGG	0.699688	3_1:-90842256	None:intergenic
AAGAAGAAAGGTAAGAAAAT+TGG	0.246509	3_1:-90842647	None:intergenic
AAGACGCCGCAGTGGAGAAC+CGG	0.467079	3_1:+90842250	Msa0387000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGAATCGAAGGAGAAA+CGG	-	chr3_1:90841371-90841390	None:intergenic	30.0%
AGAAGAAGAATAAGAATCGA+AGG	-	chr3_1:90841379-90841398	None:intergenic	30.0%
TGAGAAAATGGAAGAATCAA+AGG	-	chr3_1:90841783-90841802	None:intergenic	30.0%
AATAAGAATCGAAGGAGAAA+CGG	-	chr3_1:90841371-90841390	None:intergenic	30.0%
AGAAGAAGAATAAGAATCGA+AGG	-	chr3_1:90841379-90841398	None:intergenic	30.0%
TGAGAAAATGGAAGAATCAA+AGG	-	chr3_1:90841783-90841802	None:intergenic	30.0%
GAGTAATTCGGTTGAGAAAA+TGG	-	chr3_1:90841795-90841814	None:intergenic	35.0%
AACGAAGAGAGAAAAACTCA+CGG	-	chr3_1:90841822-90841841	None:intergenic	35.0%
AAATTGGGGGTTCAATTTAC+AGG	+	chr3_1:90841879-90841898	Msa0387000:intron	35.0%
CAAAAACATGAAACTCAGCA+TGG	+	chr3_1:90842001-90842020	Msa0387000:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	90841260	90842701	90841260	ID=Msa0387000;Name=Msa0387000
chr3_1	mRNA	90841260	90842701	90841260	ID=Msa0387000-mRNA-1;Parent=Msa0387000;Name=Msa0387000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=501\|1\|1\|1\|0.5\|0.33\|3\|215\|180
chr3_1	exon	90841260	90841410	90841260	ID=Msa0387000-mRNA-1:exon:25154;Parent=Msa0387000-mRNA-1
chr3_1	exon	90841514	90841820	90841514	ID=Msa0387000-mRNA-1:exon:25155;Parent=Msa0387000-mRNA-1
chr3_1	exon	90841901	90842701	90841901	ID=Msa0387000-mRNA-1:exon:25156;Parent=Msa0387000-mRNA-1
chr3_1	five_prime_UTR	90841260	90841410	90841260	ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1	five_prime_UTR	90841514	90841820	90841514	ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1	five_prime_UTR	90841901	90841943	90841901	ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1	CDS	90841944	90842486	90841944	ID=Msa0387000-mRNA-1:cds;Parent=Msa0387000-mRNA-1
chr3_1	three_prime_UTR	90842487	90842701	90842487	ID=Msa0387000-mRNA-1:three_prime_utr;Parent=Msa0387000-mRNA-1

Gene Sequence

>Msa0387000

ATGATTCTCGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACACGTGTCCTCAAAAACATGAAACTCAGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACGAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCCGTCACCGTCTGTTGTTTTTGGGGGACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCTTGAGGCCCAAGAAGAGGGTCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTGGGTGCTAAAACCCTTTGTAACGCGTGCGGGGTTCGTTATAAATCAGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGAAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACCACTTGCTGA

Protein sequence

>Msa0387000

MILELSLLYPVQIQTNTCPQKHETQHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFPSPSVVFGGPPAKKQKKKPEALEAQEEGQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVTTC*