AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387000 MtrunA17_Chr3g0145121 93.923 181 7 1 4 180 121 301 2.55e-125 354
Msa0387000 MtrunA17_Chr4g0035891 57.865 178 57 4 2 179 136 295 3.99e-56 178
Msa0387000 MtrunA17_Chr8g0372291 67.347 98 28 2 73 170 198 291 2.75e-39 135
Msa0387000 MtrunA17_Chr5g0404981 83.333 72 12 0 94 165 300 371 4.13e-39 137
Msa0387000 MtrunA17_Chr1g0169431 75.000 72 18 0 92 163 170 241 7.99e-35 122
Msa0387000 MtrunA17_Chr6g0461591 66.667 84 26 1 77 158 173 256 2.37e-33 119
Msa0387000 MtrunA17_Chr1g0213161 54.128 109 48 1 70 176 126 234 6.39e-33 117
Msa0387000 MtrunA17_Chr1g0199671 76.923 65 15 0 94 158 242 306 8.16e-33 119
Msa0387000 MtrunA17_Chr2g0326771 68.493 73 23 0 86 158 208 280 1.11e-32 118
Msa0387000 MtrunA17_Chr1g0146231 57.143 105 44 1 61 164 200 304 4.13e-32 117
Msa0387000 MtrunA17_Chr4g0028961 73.134 67 18 0 94 160 232 298 5.97e-32 117
Msa0387000 MtrunA17_Chr7g0253101 78.462 65 14 0 94 158 188 252 7.64e-32 115
Msa0387000 MtrunA17_Chr8g0340401 74.286 70 18 0 94 163 226 295 2.03e-31 115
Msa0387000 MtrunA17_Chr3g0140331 69.737 76 23 0 89 164 248 323 2.31e-31 116
Msa0387000 MtrunA17_Chr5g0395391 63.636 77 28 0 85 161 261 337 9.29e-30 111
Msa0387000 MtrunA17_Chr5g0395391 54.945 91 41 0 75 165 149 239 2.12e-27 105
Msa0387000 MtrunA17_Chr7g0232671 58.730 63 26 0 93 155 186 248 2.96e-22 90.1
Msa0387000 MtrunA17_Chr7g0232701 55.556 63 28 0 93 155 72 134 6.12e-21 84.0
Msa0387000 MtrunA17_Chr7g0232681 53.968 63 29 0 93 155 131 193 9.92e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387000 AT4G36240.1 59.167 120 40 2 47 161 116 231 4.31e-42 141
Msa0387000 AT5G66320.2 63.063 111 29 2 53 161 216 316 2.73e-40 139
Msa0387000 AT5G66320.1 63.063 111 29 2 53 161 216 316 2.73e-40 139
Msa0387000 AT3G51080.1 70.000 90 23 2 94 179 221 310 4.92e-37 130
Msa0387000 AT5G25830.1 62.887 97 31 1 67 163 197 288 2.44e-34 124
Msa0387000 AT4G34680.1 74.359 78 19 1 92 169 178 254 3.51e-34 122
Msa0387000 AT4G34680.2 74.359 78 19 1 92 169 178 254 3.51e-34 122
Msa0387000 AT3G60530.1 52.713 129 52 3 36 161 103 225 2.94e-33 119
Msa0387000 AT4G32890.1 47.143 140 65 3 30 163 130 266 6.87e-33 119
Msa0387000 AT3G24050.1 72.464 69 19 0 92 160 192 260 2.63e-32 117
Msa0387000 AT3G54810.1 73.529 68 18 0 94 161 229 296 2.85e-32 118
Msa0387000 AT3G54810.2 73.529 68 18 0 94 161 229 296 2.85e-32 118
Msa0387000 AT2G45050.1 69.737 76 23 0 89 164 174 249 3.63e-32 116
Msa0387000 AT1G08010.2 62.025 79 30 0 84 162 210 288 1.26e-31 116
Msa0387000 AT1G08010.1 62.025 79 30 0 84 162 210 288 1.26e-31 116
Msa0387000 AT1G08010.3 62.025 79 30 0 84 162 210 288 1.26e-31 116
Msa0387000 AT1G08000.2 62.821 78 29 0 84 161 208 285 3.26e-30 112
Msa0387000 AT1G08000.1 62.821 78 29 0 84 161 208 285 3.26e-30 112
Msa0387000 AT3G45170.1 55.422 83 37 0 79 161 100 182 2.78e-28 105
Msa0387000 AT2G28340.1 59.701 67 27 0 96 162 193 259 2.56e-25 99.4

Find 97 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTAACTGACCCTCTTCT+TGG 0.222887 3_1:-90842201 None:intergenic
AAGAAGAAAGGTAAGAAAAT+TGG 0.246509 3_1:-90842647 None:intergenic
GAGTAATTCGGTTGAGAAAA+TGG 0.282779 3_1:-90841792 None:intergenic
TTCTCATCTCCAACACTTTA+CGG 0.294944 3_1:-90842396 None:intergenic
CAACACTTTACGGTGGCTAT+TGG 0.312622 3_1:-90842386 None:intergenic
AGCAGGTAACGGATATTATT+AGG 0.332279 3_1:+90842603 Msa0387000:three_prime_UTR
TCCACCAACCCGGTTTGAAC+CGG 0.342805 3_1:+90842511 Msa0387000:three_prime_UTR
CTCAGCAAGTGGTAACCATT+TGG 0.349550 3_1:-90842465 None:intergenic
GAAAACCCAACCCTCGCGTT+TGG 0.352223 3_1:+90842089 Msa0387000:CDS
ACCGCCAACACGGTGGTTGC+CGG 0.362678 3_1:+90841608 Msa0387000:five_prime_UTR
TTCTTGGGCCTCAAGAGCCT+CGG 0.380431 3_1:-90842185 None:intergenic
GGATGATGACGTGGCAGGTC+TGG 0.383333 3_1:+90841900 Msa0387000:intron
GCTGAGTCATTCATTAGATT+AGG 0.386506 3_1:+90842482 Msa0387000:exon
TGGACCGGAACCCGGTTTAC+CGG 0.387691 3_1:+90842435 Msa0387000:CDS
TTGGGTCTGAGCCGGTAAAC+CGG 0.389320 3_1:-90842446 None:intergenic
AGCTAGGCAGCAGCAGCAGC+AGG 0.398758 3_1:+90842586 Msa0387000:three_prime_UTR
TGAGCCCAAACGCGAGGGTT+GGG 0.405637 3_1:-90842094 None:intergenic
AAAACCCAACCCTCGCGTTT+GGG 0.407277 3_1:+90842090 Msa0387000:CDS
GTGTTGGTTTGAATTTGAAC+CGG 0.408949 3_1:-90841971 None:intergenic
AAAAGTAACCCGGTTCAAAC+CGG 0.417176 3_1:-90842520 None:intergenic
TGAATTTCACTGCTGAAAGT+TGG 0.418828 3_1:-90842361 None:intergenic
TTGTAACTGACCCTCTTCTT+GGG 0.419497 3_1:-90842200 None:intergenic
TCAGCAAGTGGTAACCATTT+GGG 0.434470 3_1:-90842464 None:intergenic
GAATTTCACTGCTGAAAGTT+GGG 0.435175 3_1:-90842360 None:intergenic
ACTGCTGAAAGTTGGGCTAC+AGG 0.440191 3_1:-90842353 None:intergenic
TGCGGGGTTCGTTATAAATC+AGG 0.450021 3_1:+90842304 Msa0387000:CDS
ACTCACGGGAACGAGTAATT+CGG 0.455413 3_1:-90841804 None:intergenic
CTGAGCCCAAACGCGAGGGT+TGG 0.457925 3_1:-90842095 None:intergenic
TGAGCCGGTAAACCGGGTTC+CGG 0.459738 3_1:-90842439 None:intergenic
CAGTGGAGAACCGGTCCGTT+GGG 0.465140 3_1:+90842259 Msa0387000:CDS
AAGACGCCGCAGTGGAGAAC+CGG 0.467079 3_1:+90842250 Msa0387000:CDS
CTTTGAAACCGAGTTTAAGA+AGG 0.468143 3_1:+90841540 Msa0387000:five_prime_UTR
AAACCCTTTGTAACGCGTGC+GGG 0.468327 3_1:+90842287 Msa0387000:CDS
ACCGGCAACCACCGTGTTGG+CGG 0.469757 3_1:-90841609 None:intergenic
CCCGGTTCAAACCGGGTTGG+TGG 0.470922 3_1:-90842512 None:intergenic
AGGAGAAACGGCAGTGAAGT+TGG 0.471721 3_1:-90841356 None:intergenic
CTTCACGGTTCTGGTCTTCG+TGG 0.473101 3_1:-90842062 None:intergenic
TCTTGGGCCTCAAGAGCCTC+GGG 0.483424 3_1:-90842184 None:intergenic
TTCTTCTGTTTCTTCGCTGG+TGG 0.490862 3_1:-90842157 None:intergenic
ACTGCGGCGTCTTCTGCACC+TGG 0.496651 3_1:-90842240 None:intergenic
GCAGTGGAGAACCGGTCCGT+TGG 0.505231 3_1:+90842258 Msa0387000:CDS
AATAAGAATCGAAGGAGAAA+CGG 0.505939 3_1:-90841368 None:intergenic
GTAGTGCTAGTCAGCTAGCT+AGG 0.509255 3_1:+90842570 Msa0387000:three_prime_UTR
CTCCTTGACTTCTCTAACGG+CGG 0.512576 3_1:+90841653 Msa0387000:five_prime_UTR
CCACCAACCCGGTTTGAACC+GGG 0.512758 3_1:+90842512 Msa0387000:three_prime_UTR
AGAAGAAGAATAAGAATCGA+AGG 0.513415 3_1:-90841376 None:intergenic
ATGACGTGGCAGGTCTGGAA+TGG 0.521490 3_1:+90841905 Msa0387000:five_prime_UTR
AACCCCGCACGCGTTACAAA+GGG 0.526943 3_1:-90842290 None:intergenic
TGAGAAAATGGAAGAATCAA+AGG 0.527539 3_1:-90841780 None:intergenic
CGAACTATCTCTTCTCTACC+CGG 0.533729 3_1:+90841952 Msa0387000:CDS
AAGTGTTGGAGATGAGAAAG+AGG 0.539631 3_1:+90842401 Msa0387000:CDS
ACGACGGTGTAGTCATTGCC+AGG 0.543797 3_1:+90842222 Msa0387000:CDS
CTGAAAGTTGGGCTACAGGC+CGG 0.545068 3_1:-90842349 None:intergenic
TGGGTCTGAGCCGGTAAACC+GGG 0.551116 3_1:-90842445 None:intergenic
GGAATGGTTGGACCGGAACC+CGG 0.552734 3_1:+90842427 Msa0387000:CDS
GCAAACTCCCTTCTTAAACT+CGG 0.554550 3_1:-90841548 None:intergenic
GAGGAAAGGAATGGTTGGAC+CGG 0.555733 3_1:+90842420 Msa0387000:CDS
AACCCTTTGTAACGCGTGCG+GGG 0.556096 3_1:+90842288 Msa0387000:CDS
CAATAGCCACCGTAAAGTGT+TGG 0.557110 3_1:+90842387 Msa0387000:CDS
AGAAAGAGGAAAGGAATGGT+TGG 0.560194 3_1:+90842415 Msa0387000:CDS
GAACCCCGCACGCGTTACAA+AGG 0.560484 3_1:-90842291 None:intergenic
TTACAGGATGATGACGTGGC+AGG 0.560919 3_1:+90841895 Msa0387000:intron
GCTCTTGAGGCCCAAGAAGA+GGG 0.561687 3_1:+90842190 Msa0387000:CDS
GTAACCATTTGGGTCTGAGC+CGG 0.562666 3_1:-90842454 None:intergenic
TTGGAGATGAGAAAGAGGAA+AGG 0.563009 3_1:+90842406 Msa0387000:CDS
GGGCGCTGAGCCCAAACGCG+AGG 0.563588 3_1:-90842100 None:intergenic
TTTGAAACCGAGTTTAAGAA+GGG 0.567414 3_1:+90841541 Msa0387000:five_prime_UTR
GGCTCTTGAGGCCCAAGAAG+AGG 0.567428 3_1:+90842189 Msa0387000:CDS
GAAGTCAAGGAGGTCGTCAA+CGG 0.569324 3_1:-90841642 None:intergenic
CACCGCCGTTAGAGAAGTCA+AGG 0.571693 3_1:-90841655 None:intergenic
ATCTTCTGAGAGTGATTGAG+AGG 0.572536 3_1:-90841732 None:intergenic
GGTAACGGATATTATTAGGA+AGG 0.573529 3_1:+90842607 Msa0387000:three_prime_UTR
TTTACCGGCTCAGACCCAAA+TGG 0.575540 3_1:+90842450 Msa0387000:CDS
TGTTGGTTTGAATTTGAACC+GGG 0.578403 3_1:-90841970 None:intergenic
GATGAGAAAGAGGAAAGGAA+TGG 0.578460 3_1:+90842411 Msa0387000:CDS
AAAGTAACCCGGTTCAAACC+GGG 0.580211 3_1:-90842519 None:intergenic
TGACGTGGCAGGTCTGGAAT+GGG 0.589105 3_1:+90841906 Msa0387000:five_prime_UTR
TCTCTTCTTCATCTCCGTCG+TGG 0.602523 3_1:-90841688 None:intergenic
AGAATCAAAGGAAGCGTCGG+TGG 0.602647 3_1:-90841768 None:intergenic
GGCGCTGAGCCCAAACGCGA+GGG 0.608307 3_1:-90842099 None:intergenic
GGAAGAATCAAAGGAAGCGT+CGG 0.616525 3_1:-90841771 None:intergenic
TTCACCGGCAACCACCGTGT+TGG 0.618211 3_1:-90841612 None:intergenic
CAATTTACAGGATGATGACG+TGG 0.618285 3_1:+90841891 Msa0387000:intron
CTAATGAATGACTCAGCAAG+TGG 0.621278 3_1:-90842476 None:intergenic
AGGTGCAGAAGACGCCGCAG+TGG 0.632590 3_1:+90842242 Msa0387000:CDS
GGGTTCGTTATAAATCAGGT+CGG 0.635663 3_1:+90842308 Msa0387000:CDS
GTCAACGGAGAAATCTTCAC+CGG 0.637583 3_1:-90841627 None:intergenic
GACCTCCTTGACTTCTCTAA+CGG 0.644071 3_1:+90841650 Msa0387000:five_prime_UTR
AAAACCCTTTGTAACGCGTG+CGG 0.650760 3_1:+90842286 Msa0387000:CDS
TAGGAGATACTCCACCAACC+CGG 0.658665 3_1:+90842501 Msa0387000:three_prime_UTR
TCATCTCCAACACTTTACGG+TGG 0.668782 3_1:-90842393 None:intergenic
TAACCCGGTTCAAACCGGGT+TGG 0.670817 3_1:-90842515 None:intergenic
AACGGACCGGTTCTCCACTG+CGG 0.699688 3_1:-90842256 None:intergenic
TAGCTTCACCGCCAACACGG+TGG 0.733444 3_1:+90841601 Msa0387000:five_prime_UTR
CGCCGTTAGAGAAGTCAAGG+AGG 0.737377 3_1:-90841652 None:intergenic
AAGAGGGTCAGTTACAACGA+CGG 0.739560 3_1:+90842206 Msa0387000:CDS
GGTGATATTCTTCACCACGA+CGG 0.777931 3_1:+90841674 Msa0387000:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTAAAATATTTTAG+TGG + chr3_1:90842539-90842558 Msa0387000:three_prime_UTR 10.0%
!! TAAATAATTAAAAAGAAGAA+AGG - chr3_1:90842662-90842681 None:intergenic 10.0%
!!! TTTTTTGTAAAATATTTTAG+TGG + chr3_1:90842539-90842558 Msa0387000:three_prime_UTR 10.0%
!! TAAATAATTAAAAAGAAGAA+AGG - chr3_1:90842662-90842681 None:intergenic 10.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3_1:90841856-90841875 None:intergenic 15.0%
!! TTAGTAATTGAAATTGAAAT+TGG + chr3_1:90841863-90841882 Msa0387000:intron 15.0%
!! TAGTAATTGAAATTGAAATT+GGG + chr3_1:90841864-90841883 Msa0387000:intron 15.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3_1:90841856-90841875 None:intergenic 15.0%
!! TTAGTAATTGAAATTGAAAT+TGG + chr3_1:90841863-90841882 Msa0387000:intron 15.0%
!! TAGTAATTGAAATTGAAATT+GGG + chr3_1:90841864-90841883 Msa0387000:intron 15.0%
!! AGTAATTGAAATTGAAATTG+GGG + chr3_1:90841865-90841884 Msa0387000:intron 20.0%
!!! TATTTTACAAAAAAGTAACC+CGG - chr3_1:90842533-90842552 None:intergenic 20.0%
!! AGTAATTGAAATTGAAATTG+GGG + chr3_1:90841865-90841884 Msa0387000:intron 20.0%
!!! TATTTTACAAAAAAGTAACC+CGG - chr3_1:90842533-90842552 None:intergenic 20.0%
!! ACTTGACGTTTTATAGTAAA+GGG - chr3_1:90841464-90841483 None:intergenic 25.0%
! TGAAATTGTTTGCAGAAAAA+TGG + chr3_1:90841499-90841518 Msa0387000:intron 25.0%
! GTAATTGAAATTGAAATTGG+GGG + chr3_1:90841866-90841885 Msa0387000:intron 25.0%
! AAGAAGAAAGGTAAGAAAAT+TGG - chr3_1:90842650-90842669 None:intergenic 25.0%
!! ACTTGACGTTTTATAGTAAA+GGG - chr3_1:90841464-90841483 None:intergenic 25.0%
! TGAAATTGTTTGCAGAAAAA+TGG + chr3_1:90841499-90841518 Msa0387000:intron 25.0%
! GTAATTGAAATTGAAATTGG+GGG + chr3_1:90841866-90841885 Msa0387000:intron 25.0%
! AAGAAGAAAGGTAAGAAAAT+TGG - chr3_1:90842650-90842669 None:intergenic 25.0%
AATAAGAATCGAAGGAGAAA+CGG - chr3_1:90841371-90841390 None:intergenic 30.0%
AGAAGAAGAATAAGAATCGA+AGG - chr3_1:90841379-90841398 None:intergenic 30.0%
!! TTCTTCTTCTTCTTTTTCAC+AGG + chr3_1:90841389-90841408 Msa0387000:five_prime_UTR 30.0%
! CACTTGACGTTTTATAGTAA+AGG - chr3_1:90841465-90841484 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3_1:90841541-90841560 Msa0387000:five_prime_UTR 30.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3_1:90841783-90841802 None:intergenic 30.0%
AATAAGAATCGAAGGAGAAA+CGG - chr3_1:90841371-90841390 None:intergenic 30.0%
AGAAGAAGAATAAGAATCGA+AGG - chr3_1:90841379-90841398 None:intergenic 30.0%
!! TTCTTCTTCTTCTTTTTCAC+AGG + chr3_1:90841389-90841408 Msa0387000:five_prime_UTR 30.0%
! CACTTGACGTTTTATAGTAA+AGG - chr3_1:90841465-90841484 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3_1:90841541-90841560 Msa0387000:five_prime_UTR 30.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3_1:90841783-90841802 None:intergenic 30.0%
! CAATCGACGTAGAAGTTTTA+TGG - chr3_1:90841433-90841452 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3_1:90841540-90841559 Msa0387000:five_prime_UTR 35.0%
!! TTTGCTTTTCAGCAAACTCT+CGG + chr3_1:90841566-90841585 Msa0387000:five_prime_UTR 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3_1:90841795-90841814 None:intergenic 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3_1:90841822-90841841 None:intergenic 35.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3_1:90841879-90841898 Msa0387000:intron 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3_1:90841973-90841992 None:intergenic 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3_1:90841974-90841993 None:intergenic 35.0%
!! TGCTGAGTTTCATGTTTTTG+AGG - chr3_1:90842001-90842020 None:intergenic 35.0%
CAAAAACATGAAACTCAGCA+TGG + chr3_1:90842001-90842020 Msa0387000:CDS 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3_1:90842074-90842093 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3_1:90842080-90842099 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3_1:90842163-90842182 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3_1:90842318-90842337 Msa0387000:CDS 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3_1:90842363-90842382 None:intergenic 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3_1:90842364-90842383 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3_1:90842399-90842418 None:intergenic 35.0%
GCTGAGTCATTCATTAGATT+AGG + chr3_1:90842482-90842501 Msa0387000:exon 35.0%
!! AGCAGGTAACGGATATTATT+AGG + chr3_1:90842603-90842622 Msa0387000:three_prime_UTR 35.0%
!! GGTAACGGATATTATTAGGA+AGG + chr3_1:90842607-90842626 Msa0387000:three_prime_UTR 35.0%
! CAATCGACGTAGAAGTTTTA+TGG - chr3_1:90841433-90841452 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3_1:90841540-90841559 Msa0387000:five_prime_UTR 35.0%
!! TTTGCTTTTCAGCAAACTCT+CGG + chr3_1:90841566-90841585 Msa0387000:five_prime_UTR 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3_1:90841795-90841814 None:intergenic 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3_1:90841822-90841841 None:intergenic 35.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3_1:90841879-90841898 Msa0387000:intron 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3_1:90841973-90841992 None:intergenic 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3_1:90841974-90841993 None:intergenic 35.0%
!! TGCTGAGTTTCATGTTTTTG+AGG - chr3_1:90842001-90842020 None:intergenic 35.0%
CAAAAACATGAAACTCAGCA+TGG + chr3_1:90842001-90842020 Msa0387000:CDS 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3_1:90842074-90842093 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3_1:90842080-90842099 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3_1:90842163-90842182 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3_1:90842318-90842337 Msa0387000:CDS 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3_1:90842363-90842382 None:intergenic 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3_1:90842364-90842383 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3_1:90842399-90842418 None:intergenic 35.0%
GCTGAGTCATTCATTAGATT+AGG + chr3_1:90842482-90842501 Msa0387000:exon 35.0%
!! AGCAGGTAACGGATATTATT+AGG + chr3_1:90842603-90842622 Msa0387000:three_prime_UTR 35.0%
!! GGTAACGGATATTATTAGGA+AGG + chr3_1:90842607-90842626 Msa0387000:three_prime_UTR 35.0%
GCAAACTCCCTTCTTAAACT+CGG - chr3_1:90841551-90841570 None:intergenic 40.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3_1:90841735-90841754 None:intergenic 40.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3_1:90841821-90841840 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3_1:90841891-90841910 Msa0387000:intron 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3_1:90841990-90842009 None:intergenic 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3_1:90842203-90842222 None:intergenic 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3_1:90842308-90842327 Msa0387000:CDS 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3_1:90842330-90842349 Msa0387000:CDS 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3_1:90842401-90842420 Msa0387000:CDS 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3_1:90842406-90842425 Msa0387000:CDS 40.0%
GATGAGAAAGAGGAAAGGAA+TGG + chr3_1:90842411-90842430 Msa0387000:CDS 40.0%
AGAAAGAGGAAAGGAATGGT+TGG + chr3_1:90842415-90842434 Msa0387000:CDS 40.0%
TCAGCAAGTGGTAACCATTT+GGG - chr3_1:90842467-90842486 None:intergenic 40.0%
CTAATGAATGACTCAGCAAG+TGG - chr3_1:90842479-90842498 None:intergenic 40.0%
AAAAGTAACCCGGTTCAAAC+CGG - chr3_1:90842523-90842542 None:intergenic 40.0%
GCAAACTCCCTTCTTAAACT+CGG - chr3_1:90841551-90841570 None:intergenic 40.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3_1:90841735-90841754 None:intergenic 40.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3_1:90841821-90841840 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3_1:90841891-90841910 Msa0387000:intron 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3_1:90841990-90842009 None:intergenic 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3_1:90842203-90842222 None:intergenic 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3_1:90842308-90842327 Msa0387000:CDS 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3_1:90842330-90842349 Msa0387000:CDS 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3_1:90842401-90842420 Msa0387000:CDS 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3_1:90842406-90842425 Msa0387000:CDS 40.0%
GATGAGAAAGAGGAAAGGAA+TGG + chr3_1:90842411-90842430 Msa0387000:CDS 40.0%
AGAAAGAGGAAAGGAATGGT+TGG + chr3_1:90842415-90842434 Msa0387000:CDS 40.0%
TCAGCAAGTGGTAACCATTT+GGG - chr3_1:90842467-90842486 None:intergenic 40.0%
CTAATGAATGACTCAGCAAG+TGG - chr3_1:90842479-90842498 None:intergenic 40.0%
AAAAGTAACCCGGTTCAAAC+CGG - chr3_1:90842523-90842542 None:intergenic 40.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3_1:90841598-90841617 Msa0387000:five_prime_UTR 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3_1:90841630-90841649 None:intergenic 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3_1:90841650-90841669 Msa0387000:five_prime_UTR 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3_1:90841674-90841693 Msa0387000:five_prime_UTR 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3_1:90841774-90841793 None:intergenic 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3_1:90841807-90841826 None:intergenic 45.0%
CGAACTATCTCTTCTCTACC+CGG + chr3_1:90841952-90841971 Msa0387000:CDS 45.0%
!! ACAGACGGTGACGGAAAAAA+CGG - chr3_1:90842124-90842143 None:intergenic 45.0%
CCAAAAACAACAGACGGTGA+CGG - chr3_1:90842133-90842152 None:intergenic 45.0%
!!! CGTCACCGTCTGTTGTTTTT+GGG + chr3_1:90842131-90842150 Msa0387000:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3_1:90842132-90842151 Msa0387000:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3_1:90842133-90842152 Msa0387000:CDS 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3_1:90842160-90842179 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3_1:90842168-90842187 Msa0387000:CDS 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3_1:90842204-90842223 None:intergenic 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3_1:90842206-90842225 Msa0387000:CDS 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3_1:90842277-90842296 None:intergenic 45.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3_1:90842286-90842305 Msa0387000:CDS 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3_1:90842304-90842323 Msa0387000:CDS 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3_1:90842389-90842408 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3_1:90842387-90842406 Msa0387000:CDS 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3_1:90842396-90842415 None:intergenic 45.0%
CTCAGCAAGTGGTAACCATT+TGG - chr3_1:90842468-90842487 None:intergenic 45.0%
AAAGTAACCCGGTTCAAACC+GGG - chr3_1:90842522-90842541 None:intergenic 45.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3_1:90841598-90841617 Msa0387000:five_prime_UTR 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3_1:90841630-90841649 None:intergenic 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3_1:90841650-90841669 Msa0387000:five_prime_UTR 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3_1:90841674-90841693 Msa0387000:five_prime_UTR 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3_1:90841774-90841793 None:intergenic 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3_1:90841807-90841826 None:intergenic 45.0%
CGAACTATCTCTTCTCTACC+CGG + chr3_1:90841952-90841971 Msa0387000:CDS 45.0%
!! ACAGACGGTGACGGAAAAAA+CGG - chr3_1:90842124-90842143 None:intergenic 45.0%
CCAAAAACAACAGACGGTGA+CGG - chr3_1:90842133-90842152 None:intergenic 45.0%
!!! CGTCACCGTCTGTTGTTTTT+GGG + chr3_1:90842131-90842150 Msa0387000:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3_1:90842132-90842151 Msa0387000:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3_1:90842133-90842152 Msa0387000:CDS 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3_1:90842160-90842179 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3_1:90842168-90842187 Msa0387000:CDS 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3_1:90842204-90842223 None:intergenic 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3_1:90842206-90842225 Msa0387000:CDS 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3_1:90842277-90842296 None:intergenic 45.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3_1:90842286-90842305 Msa0387000:CDS 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3_1:90842304-90842323 Msa0387000:CDS 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3_1:90842389-90842408 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3_1:90842387-90842406 Msa0387000:CDS 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3_1:90842396-90842415 None:intergenic 45.0%
CTCAGCAAGTGGTAACCATT+TGG - chr3_1:90842468-90842487 None:intergenic 45.0%
AAAGTAACCCGGTTCAAACC+GGG - chr3_1:90842522-90842541 None:intergenic 45.0%
AGGAGAAACGGCAGTGAAGT+TGG - chr3_1:90841359-90841378 None:intergenic 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3_1:90841571-90841590 Msa0387000:five_prime_UTR 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3_1:90841645-90841664 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3_1:90841653-90841672 Msa0387000:five_prime_UTR 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3_1:90841691-90841710 None:intergenic 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3_1:90841771-90841790 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3_1:90841895-90841914 Msa0387000:intron 50.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3_1:90842090-90842109 Msa0387000:CDS 50.0%
!! CAGACGGTGACGGAAAAAAC+GGG - chr3_1:90842123-90842142 None:intergenic 50.0%
!!! CCGTCACCGTCTGTTGTTTT+TGG + chr3_1:90842130-90842149 Msa0387000:CDS 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3_1:90842139-90842158 None:intergenic 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3_1:90842287-90842306 Msa0387000:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3_1:90842356-90842375 None:intergenic 50.0%
GAGGAAAGGAATGGTTGGAC+CGG + chr3_1:90842420-90842439 Msa0387000:CDS 50.0%
!! TTTACCGGCTCAGACCCAAA+TGG + chr3_1:90842450-90842469 Msa0387000:CDS 50.0%
GTAACCATTTGGGTCTGAGC+CGG - chr3_1:90842457-90842476 None:intergenic 50.0%
TAGGAGATACTCCACCAACC+CGG + chr3_1:90842501-90842520 Msa0387000:three_prime_UTR 50.0%
GTAGTGCTAGTCAGCTAGCT+AGG + chr3_1:90842570-90842589 Msa0387000:three_prime_UTR 50.0%
AGGAGAAACGGCAGTGAAGT+TGG - chr3_1:90841359-90841378 None:intergenic 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3_1:90841571-90841590 Msa0387000:five_prime_UTR 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3_1:90841645-90841664 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3_1:90841653-90841672 Msa0387000:five_prime_UTR 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3_1:90841691-90841710 None:intergenic 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3_1:90841771-90841790 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3_1:90841895-90841914 Msa0387000:intron 50.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3_1:90842090-90842109 Msa0387000:CDS 50.0%
!! CAGACGGTGACGGAAAAAAC+GGG - chr3_1:90842123-90842142 None:intergenic 50.0%
!!! CCGTCACCGTCTGTTGTTTT+TGG + chr3_1:90842130-90842149 Msa0387000:CDS 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3_1:90842139-90842158 None:intergenic 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3_1:90842287-90842306 Msa0387000:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3_1:90842356-90842375 None:intergenic 50.0%
GAGGAAAGGAATGGTTGGAC+CGG + chr3_1:90842420-90842439 Msa0387000:CDS 50.0%
!! TTTACCGGCTCAGACCCAAA+TGG + chr3_1:90842450-90842469 Msa0387000:CDS 50.0%
GTAACCATTTGGGTCTGAGC+CGG - chr3_1:90842457-90842476 None:intergenic 50.0%
TAGGAGATACTCCACCAACC+CGG + chr3_1:90842501-90842520 Msa0387000:three_prime_UTR 50.0%
GTAGTGCTAGTCAGCTAGCT+AGG + chr3_1:90842570-90842589 Msa0387000:three_prime_UTR 50.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3_1:90841655-90841674 None:intergenic 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3_1:90841658-90841677 None:intergenic 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3_1:90841905-90841924 Msa0387000:five_prime_UTR 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3_1:90841906-90841925 Msa0387000:five_prime_UTR 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3_1:90842065-90842084 None:intergenic 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3_1:90842089-90842108 Msa0387000:CDS 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3_1:90842177-90842196 Msa0387000:CDS 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3_1:90842188-90842207 None:intergenic 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3_1:90842190-90842209 Msa0387000:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3_1:90842222-90842241 Msa0387000:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3_1:90842272-90842291 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3_1:90842288-90842307 Msa0387000:CDS 55.0%
AACCCCGCACGCGTTACAAA+GGG - chr3_1:90842293-90842312 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3_1:90842352-90842371 None:intergenic 55.0%
TTGGGTCTGAGCCGGTAAAC+CGG - chr3_1:90842449-90842468 None:intergenic 55.0%
! TCCACCAACCCGGTTTGAAC+CGG + chr3_1:90842511-90842530 Msa0387000:three_prime_UTR 55.0%
TAACCCGGTTCAAACCGGGT+TGG - chr3_1:90842518-90842537 None:intergenic 55.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3_1:90841655-90841674 None:intergenic 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3_1:90841658-90841677 None:intergenic 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3_1:90841905-90841924 Msa0387000:five_prime_UTR 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3_1:90841906-90841925 Msa0387000:five_prime_UTR 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3_1:90842065-90842084 None:intergenic 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3_1:90842089-90842108 Msa0387000:CDS 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3_1:90842177-90842196 Msa0387000:CDS 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3_1:90842188-90842207 None:intergenic 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3_1:90842190-90842209 Msa0387000:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3_1:90842222-90842241 Msa0387000:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3_1:90842272-90842291 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3_1:90842288-90842307 Msa0387000:CDS 55.0%
AACCCCGCACGCGTTACAAA+GGG - chr3_1:90842293-90842312 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3_1:90842352-90842371 None:intergenic 55.0%
TTGGGTCTGAGCCGGTAAAC+CGG - chr3_1:90842449-90842468 None:intergenic 55.0%
! TCCACCAACCCGGTTTGAAC+CGG + chr3_1:90842511-90842530 Msa0387000:three_prime_UTR 55.0%
TAACCCGGTTCAAACCGGGT+TGG - chr3_1:90842518-90842537 None:intergenic 55.0%
TAGCTTCACCGCCAACACGG+TGG + chr3_1:90841601-90841620 Msa0387000:five_prime_UTR 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3_1:90841615-90841634 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3_1:90841900-90841919 Msa0387000:intron 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3_1:90842097-90842116 None:intergenic 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3_1:90842187-90842206 None:intergenic 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3_1:90842189-90842208 Msa0387000:CDS 60.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3_1:90842250-90842269 Msa0387000:CDS 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3_1:90842259-90842278 None:intergenic 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3_1:90842259-90842278 Msa0387000:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3_1:90842294-90842313 None:intergenic 60.0%
GGAATGGTTGGACCGGAACC+CGG + chr3_1:90842427-90842446 Msa0387000:CDS 60.0%
TGGACCGGAACCCGGTTTAC+CGG + chr3_1:90842435-90842454 Msa0387000:CDS 60.0%
TGAGCCGGTAAACCGGGTTC+CGG - chr3_1:90842442-90842461 None:intergenic 60.0%
TGGGTCTGAGCCGGTAAACC+GGG - chr3_1:90842448-90842467 None:intergenic 60.0%
! CCACCAACCCGGTTTGAACC+GGG + chr3_1:90842512-90842531 Msa0387000:three_prime_UTR 60.0%
GCAGCAGCAGCAGCAGGTAA+CGG + chr3_1:90842592-90842611 Msa0387000:three_prime_UTR 60.0%
TAGCTTCACCGCCAACACGG+TGG + chr3_1:90841601-90841620 Msa0387000:five_prime_UTR 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3_1:90841615-90841634 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3_1:90841900-90841919 Msa0387000:intron 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3_1:90842097-90842116 None:intergenic 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3_1:90842187-90842206 None:intergenic 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3_1:90842189-90842208 Msa0387000:CDS 60.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3_1:90842250-90842269 Msa0387000:CDS 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3_1:90842259-90842278 None:intergenic 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3_1:90842259-90842278 Msa0387000:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3_1:90842294-90842313 None:intergenic 60.0%
GGAATGGTTGGACCGGAACC+CGG + chr3_1:90842427-90842446 Msa0387000:CDS 60.0%
TGGACCGGAACCCGGTTTAC+CGG + chr3_1:90842435-90842454 Msa0387000:CDS 60.0%
TGAGCCGGTAAACCGGGTTC+CGG - chr3_1:90842442-90842461 None:intergenic 60.0%
TGGGTCTGAGCCGGTAAACC+GGG - chr3_1:90842448-90842467 None:intergenic 60.0%
! CCACCAACCCGGTTTGAACC+GGG + chr3_1:90842512-90842531 Msa0387000:three_prime_UTR 60.0%
GCAGCAGCAGCAGCAGGTAA+CGG + chr3_1:90842592-90842611 Msa0387000:three_prime_UTR 60.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3_1:90841608-90841627 Msa0387000:five_prime_UTR 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3_1:90841612-90841631 None:intergenic 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3_1:90842098-90842117 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3_1:90842243-90842262 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3_1:90842242-90842261 Msa0387000:CDS 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3_1:90842258-90842277 Msa0387000:CDS 65.0%
! CCCGGTTCAAACCGGGTTGG+TGG - chr3_1:90842515-90842534 None:intergenic 65.0%
AGCTAGGCAGCAGCAGCAGC+AGG + chr3_1:90842586-90842605 Msa0387000:three_prime_UTR 65.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3_1:90841608-90841627 Msa0387000:five_prime_UTR 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3_1:90841612-90841631 None:intergenic 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3_1:90842098-90842117 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3_1:90842243-90842262 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3_1:90842242-90842261 Msa0387000:CDS 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3_1:90842258-90842277 Msa0387000:CDS 65.0%
! CCCGGTTCAAACCGGGTTGG+TGG - chr3_1:90842515-90842534 None:intergenic 65.0%
AGCTAGGCAGCAGCAGCAGC+AGG + chr3_1:90842586-90842605 Msa0387000:three_prime_UTR 65.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3_1:90842102-90842121 None:intergenic 70.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3_1:90842102-90842121 None:intergenic 70.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3_1:90842103-90842122 None:intergenic 75.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3_1:90842103-90842122 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90841260 90842701 90841260 ID=Msa0387000;Name=Msa0387000
chr3_1 mRNA 90841260 90842701 90841260 ID=Msa0387000-mRNA-1;Parent=Msa0387000;Name=Msa0387000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=501|1|1|1|0.5|0.33|3|215|180
chr3_1 exon 90841260 90841410 90841260 ID=Msa0387000-mRNA-1:exon:25154;Parent=Msa0387000-mRNA-1
chr3_1 exon 90841514 90841820 90841514 ID=Msa0387000-mRNA-1:exon:25155;Parent=Msa0387000-mRNA-1
chr3_1 exon 90841901 90842701 90841901 ID=Msa0387000-mRNA-1:exon:25156;Parent=Msa0387000-mRNA-1
chr3_1 five_prime_UTR 90841260 90841410 90841260 ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1 five_prime_UTR 90841514 90841820 90841514 ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1 five_prime_UTR 90841901 90841943 90841901 ID=Msa0387000-mRNA-1:five_prime_utr;Parent=Msa0387000-mRNA-1
chr3_1 CDS 90841944 90842486 90841944 ID=Msa0387000-mRNA-1:cds;Parent=Msa0387000-mRNA-1
chr3_1 three_prime_UTR 90842487 90842701 90842487 ID=Msa0387000-mRNA-1:three_prime_utr;Parent=Msa0387000-mRNA-1
Gene Sequence

>Msa0387000

ATGATTCTCGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACACGTGTCCTCAAAAACATGAAACTCAGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACGAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCCGTCACCGTCTGTTGTTTTTGGGGGACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCTTGAGGCCCAAGAAGAGGGTCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTGGGTGCTAAAACCCTTTGTAACGCGTGCGGGGTTCGTTATAAATCAGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGAAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACCACTTGCTGA
Protein sequence

>Msa0387000

MILELSLLYPVQIQTNTCPQKHETQHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFPSPSVVFGGPPAKKQKKKPEALEAQEEGQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVTTC*