AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0523930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523930 MtrunA17_Chr3g0145121 92.069 290 19 1 52 337 12 301 0.0 504
Msa0523930 MtrunA17_Chr4g0035891 54.455 303 101 8 52 336 12 295 3.27e-91 274
Msa0523930 MtrunA17_Chr8g0372291 41.304 276 135 7 61 321 25 288 1.18e-53 177
Msa0523930 MtrunA17_Chr8g0340401 38.235 272 129 8 79 320 33 295 3.12e-46 160
Msa0523930 MtrunA17_Chr3g0140331 40.824 267 127 8 76 321 67 323 5.55e-46 160
Msa0523930 MtrunA17_Chr5g0404981 41.107 253 109 7 108 322 121 371 6.88e-45 157
Msa0523930 MtrunA17_Chr1g0146231 34.812 293 151 7 68 321 13 304 1.08e-41 148
Msa0523930 MtrunA17_Chr1g0169431 62.637 91 34 0 230 320 151 241 5.45e-34 125
Msa0523930 MtrunA17_Chr1g0199671 76.923 65 15 0 251 315 242 306 1.47e-32 123
Msa0523930 MtrunA17_Chr6g0461591 37.719 228 78 10 147 315 34 256 3.19e-32 121
Msa0523930 MtrunA17_Chr1g0213161 36.538 208 97 5 143 315 9 216 3.85e-32 120
Msa0523930 MtrunA17_Chr2g0326771 68.493 73 23 0 243 315 208 280 7.36e-32 121
Msa0523930 MtrunA17_Chr7g0253101 39.352 216 79 9 146 315 43 252 1.27e-31 119
Msa0523930 MtrunA17_Chr4g0028961 73.134 67 18 0 251 317 232 298 4.49e-31 119
Msa0523930 MtrunA17_Chr5g0395391 62.025 79 30 0 242 320 261 339 5.62e-29 114
Msa0523930 MtrunA17_Chr5g0395391 33.333 249 132 6 82 322 17 239 3.53e-27 109
Msa0523930 MtrunA17_Chr7g0232671 58.730 63 26 0 250 312 186 248 6.21e-21 90.5
Msa0523930 MtrunA17_Chr7g0232701 55.556 63 28 0 250 312 72 134 1.06e-19 84.0
Msa0523930 MtrunA17_Chr7g0232681 31.844 179 107 6 140 316 30 195 3.71e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523930 AT4G36240.1 43.426 251 101 7 80 318 10 231 1.79e-52 173
Msa0523930 AT5G66320.2 38.365 318 151 8 43 318 2 316 1.72e-46 161
Msa0523930 AT5G66320.1 38.365 318 151 8 43 318 2 316 1.72e-46 161
Msa0523930 AT4G32890.1 40.426 282 129 14 61 320 2 266 2.28e-46 160
Msa0523930 AT4G34680.1 40.845 284 112 10 59 326 11 254 4.23e-44 152
Msa0523930 AT4G34680.2 40.845 284 112 10 59 326 11 254 4.23e-44 152
Msa0523930 AT5G25830.1 38.596 285 122 13 80 320 13 288 1.14e-41 148
Msa0523930 AT3G60530.1 45.745 188 74 5 134 318 63 225 3.55e-41 144
Msa0523930 AT2G45050.1 40.000 210 93 5 127 321 58 249 1.94e-38 137
Msa0523930 AT3G51080.1 70.000 90 23 2 251 336 221 310 3.93e-36 133
Msa0523930 AT3G54810.1 73.529 68 18 0 251 318 229 296 7.39e-32 122
Msa0523930 AT3G54810.2 73.529 68 18 0 251 318 229 296 7.39e-32 122
Msa0523930 AT3G24050.1 65.476 84 28 1 234 317 178 260 8.09e-32 120
Msa0523930 AT1G08010.2 63.636 77 28 0 241 317 210 286 8.22e-31 119
Msa0523930 AT1G08010.1 63.636 77 28 0 241 317 210 286 8.22e-31 119
Msa0523930 AT1G08010.3 63.636 77 28 0 241 317 210 286 8.22e-31 119
Msa0523930 AT1G08000.2 63.636 77 28 0 241 317 208 284 2.05e-29 115
Msa0523930 AT1G08000.1 63.636 77 28 0 241 317 208 284 2.05e-29 115
Msa0523930 AT3G45170.1 55.422 83 37 0 236 318 100 182 5.48e-27 105
Msa0523930 AT2G28340.1 61.538 65 25 0 253 317 193 257 1.07e-24 102

Find 100 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATCTTGCTTTGTAAAA+AGG 0.178742 3_4:-77400637 None:intergenic
GTTGTAACTGACCCTCTTCT+TGG 0.222887 3_4:-77401593 None:intergenic
AAGAAGAAAGGTAAGAAAAT+TGG 0.246509 3_4:-77402039 None:intergenic
GAGTAATTCGGTTGAGAAAA+TGG 0.282779 3_4:-77401179 None:intergenic
TTCTCATCTCCAACACTTTA+CGG 0.294944 3_4:-77401788 None:intergenic
CAACACTTTACGGTGGCTAT+TGG 0.312622 3_4:-77401778 None:intergenic
AGCAGGTAACGGATATTATT+AGG 0.332279 3_4:+77401995 Msa0523930:three_prime_UTR
TCCACCAACCCGGTTTGAAC+CGG 0.342805 3_4:+77401903 Msa0523930:three_prime_UTR
CTCAGCAAGTGGTAACCATT+TGG 0.349550 3_4:-77401857 None:intergenic
GAAAACCCAACCCTCGCGTT+TGG 0.352223 3_4:+77401481 Msa0523930:CDS
ACCGCCAACACGGTGGTTGC+CGG 0.362678 3_4:+77400995 Msa0523930:CDS
TTCTTGGGCCTCAAGAGCCT+CGG 0.380431 3_4:-77401577 None:intergenic
GGATGATGACGTGGCAGGTC+TGG 0.383333 3_4:+77401287 Msa0523930:intron
GCTGAGTCATTCATTAGATT+AGG 0.386506 3_4:+77401874 Msa0523930:exon
TGGACCGGAACCCGGTTTAC+CGG 0.387691 3_4:+77401827 Msa0523930:CDS
TTGGGTCTGAGCCGGTAAAC+CGG 0.389320 3_4:-77401838 None:intergenic
AGCTAGGCAGCAGCAGCAGC+AGG 0.398758 3_4:+77401978 Msa0523930:three_prime_UTR
TGAGCCCAAACGCGAGGGTT+GGG 0.405637 3_4:-77401486 None:intergenic
AAAACCCAACCCTCGCGTTT+GGG 0.407277 3_4:+77401482 Msa0523930:CDS
GTGTTGGTTTGAATTTGAAC+CGG 0.408949 3_4:-77401363 None:intergenic
AAAAGTAACCCGGTTCAAAC+CGG 0.417176 3_4:-77401912 None:intergenic
TGAATTTCACTGCTGAAAGT+TGG 0.418828 3_4:-77401753 None:intergenic
TTGTAACTGACCCTCTTCTT+GGG 0.419497 3_4:-77401592 None:intergenic
GGGTAGAGAAGAGATAGTTC+TGG 0.431245 3_4:-77401342 None:intergenic
TCAGCAAGTGGTAACCATTT+GGG 0.434470 3_4:-77401856 None:intergenic
GAATTTCACTGCTGAAAGTT+GGG 0.435175 3_4:-77401752 None:intergenic
ACTGCTGAAAGTTGGGCTAC+AGG 0.440191 3_4:-77401745 None:intergenic
TGCGGGGTTCGTTATAAATC+AGG 0.450021 3_4:+77401696 Msa0523930:CDS
ACTCACGGGAACGAGTAATT+CGG 0.455413 3_4:-77401191 None:intergenic
CTGAGCCCAAACGCGAGGGT+TGG 0.457925 3_4:-77401487 None:intergenic
TGAGCCGGTAAACCGGGTTC+CGG 0.459738 3_4:-77401831 None:intergenic
CAGTGGAGAACCGGTCCGTT+GGG 0.465140 3_4:+77401651 Msa0523930:CDS
AAGACGCCGCAGTGGAGAAC+CGG 0.467079 3_4:+77401642 Msa0523930:CDS
CTTTGAAACCGAGTTTAAGA+AGG 0.468143 3_4:+77400927 Msa0523930:CDS
AAACCCTTTGTAACGCGTGC+GGG 0.468327 3_4:+77401679 Msa0523930:CDS
ACCGGCAACCACCGTGTTGG+CGG 0.469757 3_4:-77400996 None:intergenic
CCCGGTTCAAACCGGGTTGG+TGG 0.470922 3_4:-77401904 None:intergenic
AGGAGAAACGGCAGTGAAGT+TGG 0.471721 3_4:-77400740 None:intergenic
CTTCACGGTTCTGGTCTTCG+TGG 0.473101 3_4:-77401454 None:intergenic
TCTTGGGCCTCAAGAGCCTC+GGG 0.483424 3_4:-77401576 None:intergenic
GGTAGAGAAGAGATAGTTCT+GGG 0.490371 3_4:-77401341 None:intergenic
TTCTTCTGTTTCTTCGCTGG+TGG 0.490862 3_4:-77401549 None:intergenic
ACTGCGGCGTCTTCTGCACC+TGG 0.496651 3_4:-77401632 None:intergenic
GCAGTGGAGAACCGGTCCGT+TGG 0.505231 3_4:+77401650 Msa0523930:CDS
AATAAGAATCGAAGGAGAAA+CGG 0.505939 3_4:-77400752 None:intergenic
GTAGTGCTAGTCAGCTAGCT+AGG 0.509255 3_4:+77401962 Msa0523930:three_prime_UTR
CTCCTTGACTTCTCTAACGG+CGG 0.512576 3_4:+77401040 Msa0523930:CDS
CCACCAACCCGGTTTGAACC+GGG 0.512758 3_4:+77401904 Msa0523930:three_prime_UTR
AGAAGAAGAATAAGAATCGA+AGG 0.513415 3_4:-77400760 None:intergenic
ATGACGTGGCAGGTCTGGAA+TGG 0.521490 3_4:+77401292 Msa0523930:CDS
AACCCCGCACGCGTTACAAA+GGG 0.526943 3_4:-77401682 None:intergenic
TGAGAAAATGGAAGAATCAA+AGG 0.527539 3_4:-77401167 None:intergenic
AAGTGTTGGAGATGAGAAAG+AGG 0.539631 3_4:+77401793 Msa0523930:CDS
ACGACGGTGTAGTCATTGCC+AGG 0.543797 3_4:+77401614 Msa0523930:CDS
CTGAAAGTTGGGCTACAGGC+CGG 0.545068 3_4:-77401741 None:intergenic
TGGGTCTGAGCCGGTAAACC+GGG 0.551116 3_4:-77401837 None:intergenic
GGAATGGTTGGACCGGAACC+CGG 0.552734 3_4:+77401819 Msa0523930:CDS
GAGGAAAGGAATGGTTGGAC+CGG 0.555733 3_4:+77401812 Msa0523930:CDS
AACCCTTTGTAACGCGTGCG+GGG 0.556096 3_4:+77401680 Msa0523930:CDS
CAATAGCCACCGTAAAGTGT+TGG 0.557110 3_4:+77401779 Msa0523930:CDS
AGAAAGAGGAAAGGAATGGT+TGG 0.560194 3_4:+77401807 Msa0523930:CDS
ACAAACTCCCTTCTTAAACT+CGG 0.560314 3_4:-77400935 None:intergenic
GAACCCCGCACGCGTTACAA+AGG 0.560484 3_4:-77401683 None:intergenic
TTACAGGATGATGACGTGGC+AGG 0.560919 3_4:+77401282 Msa0523930:intron
GCTCTTGAGGCCCAAGAAGA+GGG 0.561687 3_4:+77401582 Msa0523930:CDS
GTAACCATTTGGGTCTGAGC+CGG 0.562666 3_4:-77401846 None:intergenic
TTGGAGATGAGAAAGAGGAA+AGG 0.563009 3_4:+77401798 Msa0523930:CDS
GGGCGCTGAGCCCAAACGCG+AGG 0.563588 3_4:-77401492 None:intergenic
TTTGAAACCGAGTTTAAGAA+GGG 0.567414 3_4:+77400928 Msa0523930:CDS
GGCTCTTGAGGCCCAAGAAG+AGG 0.567428 3_4:+77401581 Msa0523930:CDS
GAAGTCAAGGAGGTCGTCAA+CGG 0.569324 3_4:-77401029 None:intergenic
CACCGCCGTTAGAGAAGTCA+AGG 0.571693 3_4:-77401042 None:intergenic
ATCTTCTGAGAGTGATTGAG+AGG 0.572536 3_4:-77401119 None:intergenic
GGTAACGGATATTATTAGGA+AGG 0.573529 3_4:+77401999 Msa0523930:three_prime_UTR
TTTACCGGCTCAGACCCAAA+TGG 0.575540 3_4:+77401842 Msa0523930:CDS
TGTTGGTTTGAATTTGAACC+GGG 0.578403 3_4:-77401362 None:intergenic
GATGAGAAAGAGGAAAGGAA+TGG 0.578460 3_4:+77401803 Msa0523930:CDS
AAAGTAACCCGGTTCAAACC+GGG 0.580211 3_4:-77401911 None:intergenic
TGACGTGGCAGGTCTGGAAT+GGG 0.589105 3_4:+77401293 Msa0523930:CDS
TCTCTTCTTCATCTCCGTCG+TGG 0.602523 3_4:-77401075 None:intergenic
AGAATCAAAGGAAGCGTCGG+TGG 0.602647 3_4:-77401155 None:intergenic
GGCGCTGAGCCCAAACGCGA+GGG 0.608307 3_4:-77401491 None:intergenic
GGAAGAATCAAAGGAAGCGT+CGG 0.616525 3_4:-77401158 None:intergenic
TTCACCGGCAACCACCGTGT+TGG 0.618211 3_4:-77400999 None:intergenic
CAATTTACAGGATGATGACG+TGG 0.618285 3_4:+77401278 Msa0523930:intron
CTAATGAATGACTCAGCAAG+TGG 0.621278 3_4:-77401868 None:intergenic
AGGTGCAGAAGACGCCGCAG+TGG 0.632590 3_4:+77401634 Msa0523930:CDS
AGAACTATCTCTTCTCTACC+CGG 0.632934 3_4:+77401344 Msa0523930:CDS
GGGTTCGTTATAAATCAGGT+CGG 0.635663 3_4:+77401700 Msa0523930:CDS
GTCAACGGAGAAATCTTCAC+CGG 0.637583 3_4:-77401014 None:intergenic
GACCTCCTTGACTTCTCTAA+CGG 0.644071 3_4:+77401037 Msa0523930:CDS
AAAACCCTTTGTAACGCGTG+CGG 0.650760 3_4:+77401678 Msa0523930:CDS
TAGGAGATACTCCACCAACC+CGG 0.658665 3_4:+77401893 Msa0523930:three_prime_UTR
TCATCTCCAACACTTTACGG+TGG 0.668782 3_4:-77401785 None:intergenic
TAACCCGGTTCAAACCGGGT+TGG 0.670817 3_4:-77401907 None:intergenic
AACGGACCGGTTCTCCACTG+CGG 0.699688 3_4:-77401648 None:intergenic
TAGCTTCACCGCCAACACGG+TGG 0.733444 3_4:+77400988 Msa0523930:CDS
CGCCGTTAGAGAAGTCAAGG+AGG 0.737377 3_4:-77401039 None:intergenic
AAGAGGGTCAGTTACAACGA+CGG 0.739560 3_4:+77401598 Msa0523930:CDS
GGTGATATTCTTCACCACGA+CGG 0.777931 3_4:+77401061 Msa0523930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTAAAATATTTTAG+TGG + chr3_4:77401931-77401950 Msa0523930:three_prime_UTR 10.0%
!! TAAATAATTAAAAAGAAGAA+AGG - chr3_4:77402054-77402073 None:intergenic 10.0%
!!! TTTTTTGTAAAATATTTTAG+TGG + chr3_4:77401931-77401950 Msa0523930:three_prime_UTR 10.0%
!! TAAATAATTAAAAAGAAGAA+AGG - chr3_4:77402054-77402073 None:intergenic 10.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3_4:77401243-77401262 None:intergenic 15.0%
!! TTAGTAATTGAAATTGAAAT+TGG + chr3_4:77401250-77401269 Msa0523930:intron 15.0%
!! TAGTAATTGAAATTGAAATT+GGG + chr3_4:77401251-77401270 Msa0523930:intron 15.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3_4:77401243-77401262 None:intergenic 15.0%
!! TTAGTAATTGAAATTGAAAT+TGG + chr3_4:77401250-77401269 Msa0523930:intron 15.0%
!! TAGTAATTGAAATTGAAATT+GGG + chr3_4:77401251-77401270 Msa0523930:intron 15.0%
!! AGTAATTGAAATTGAAATTG+GGG + chr3_4:77401252-77401271 Msa0523930:intron 20.0%
!!! TATTTTACAAAAAAGTAACC+CGG - chr3_4:77401925-77401944 None:intergenic 20.0%
!! AGTAATTGAAATTGAAATTG+GGG + chr3_4:77401252-77401271 Msa0523930:intron 20.0%
!!! TATTTTACAAAAAAGTAACC+CGG - chr3_4:77401925-77401944 None:intergenic 20.0%
! CATATCTTGCTTTGTAAAAA+GGG - chr3_4:77400639-77400658 None:intergenic 25.0%
!! ACTTGACGTTTTATAGTAAA+GGG - chr3_4:77400851-77400870 None:intergenic 25.0%
! TGAAATTGTTTGCAGAAAAA+TGG + chr3_4:77400886-77400905 Msa0523930:intron 25.0%
! GTAATTGAAATTGAAATTGG+GGG + chr3_4:77401253-77401272 Msa0523930:intron 25.0%
! AAGAAGAAAGGTAAGAAAAT+TGG - chr3_4:77402042-77402061 None:intergenic 25.0%
! CATATCTTGCTTTGTAAAAA+GGG - chr3_4:77400639-77400658 None:intergenic 25.0%
!! ACTTGACGTTTTATAGTAAA+GGG - chr3_4:77400851-77400870 None:intergenic 25.0%
! TGAAATTGTTTGCAGAAAAA+TGG + chr3_4:77400886-77400905 Msa0523930:intron 25.0%
! GTAATTGAAATTGAAATTGG+GGG + chr3_4:77401253-77401272 Msa0523930:intron 25.0%
! AAGAAGAAAGGTAAGAAAAT+TGG - chr3_4:77402042-77402061 None:intergenic 25.0%
GCATATCTTGCTTTGTAAAA+AGG - chr3_4:77400640-77400659 None:intergenic 30.0%
AATAAGAATCGAAGGAGAAA+CGG - chr3_4:77400755-77400774 None:intergenic 30.0%
AGAAGAAGAATAAGAATCGA+AGG - chr3_4:77400763-77400782 None:intergenic 30.0%
!! TTCTTCTTCTTCTTTTTCAC+AGG + chr3_4:77400776-77400795 Msa0523930:CDS 30.0%
! CACTTGACGTTTTATAGTAA+AGG - chr3_4:77400852-77400871 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3_4:77400928-77400947 Msa0523930:CDS 30.0%
!! TTTGTTTTTCAGCAAACTCT+CGG + chr3_4:77400953-77400972 Msa0523930:intron 30.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3_4:77401170-77401189 None:intergenic 30.0%
GCATATCTTGCTTTGTAAAA+AGG - chr3_4:77400640-77400659 None:intergenic 30.0%
AATAAGAATCGAAGGAGAAA+CGG - chr3_4:77400755-77400774 None:intergenic 30.0%
AGAAGAAGAATAAGAATCGA+AGG - chr3_4:77400763-77400782 None:intergenic 30.0%
!! TTCTTCTTCTTCTTTTTCAC+AGG + chr3_4:77400776-77400795 Msa0523930:CDS 30.0%
! CACTTGACGTTTTATAGTAA+AGG - chr3_4:77400852-77400871 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3_4:77400928-77400947 Msa0523930:CDS 30.0%
!! TTTGTTTTTCAGCAAACTCT+CGG + chr3_4:77400953-77400972 Msa0523930:intron 30.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3_4:77401170-77401189 None:intergenic 30.0%
! CAATCGACGTAGAAGTTTTA+TGG - chr3_4:77400820-77400839 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3_4:77400927-77400946 Msa0523930:CDS 35.0%
ACAAACTCCCTTCTTAAACT+CGG - chr3_4:77400938-77400957 None:intergenic 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3_4:77401182-77401201 None:intergenic 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3_4:77401209-77401228 None:intergenic 35.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3_4:77401266-77401285 Msa0523930:intron 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3_4:77401365-77401384 None:intergenic 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3_4:77401366-77401385 None:intergenic 35.0%
!! TGCTGAGTTTCATGTTTTTG+AGG - chr3_4:77401393-77401412 None:intergenic 35.0%
CAAAAACATGAAACTCAGCA+TGG + chr3_4:77401393-77401412 Msa0523930:CDS 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3_4:77401466-77401485 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3_4:77401472-77401491 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3_4:77401555-77401574 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3_4:77401710-77401729 Msa0523930:CDS 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3_4:77401755-77401774 None:intergenic 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3_4:77401756-77401775 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3_4:77401791-77401810 None:intergenic 35.0%
GCTGAGTCATTCATTAGATT+AGG + chr3_4:77401874-77401893 Msa0523930:exon 35.0%
!! AGCAGGTAACGGATATTATT+AGG + chr3_4:77401995-77402014 Msa0523930:three_prime_UTR 35.0%
!! GGTAACGGATATTATTAGGA+AGG + chr3_4:77401999-77402018 Msa0523930:three_prime_UTR 35.0%
! CAATCGACGTAGAAGTTTTA+TGG - chr3_4:77400820-77400839 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3_4:77400927-77400946 Msa0523930:CDS 35.0%
ACAAACTCCCTTCTTAAACT+CGG - chr3_4:77400938-77400957 None:intergenic 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3_4:77401182-77401201 None:intergenic 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3_4:77401209-77401228 None:intergenic 35.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3_4:77401266-77401285 Msa0523930:intron 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3_4:77401365-77401384 None:intergenic 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3_4:77401366-77401385 None:intergenic 35.0%
!! TGCTGAGTTTCATGTTTTTG+AGG - chr3_4:77401393-77401412 None:intergenic 35.0%
CAAAAACATGAAACTCAGCA+TGG + chr3_4:77401393-77401412 Msa0523930:CDS 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3_4:77401466-77401485 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3_4:77401472-77401491 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3_4:77401555-77401574 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3_4:77401710-77401729 Msa0523930:CDS 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3_4:77401755-77401774 None:intergenic 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3_4:77401756-77401775 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3_4:77401791-77401810 None:intergenic 35.0%
GCTGAGTCATTCATTAGATT+AGG + chr3_4:77401874-77401893 Msa0523930:exon 35.0%
!! AGCAGGTAACGGATATTATT+AGG + chr3_4:77401995-77402014 Msa0523930:three_prime_UTR 35.0%
!! GGTAACGGATATTATTAGGA+AGG + chr3_4:77401999-77402018 Msa0523930:three_prime_UTR 35.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3_4:77401122-77401141 None:intergenic 40.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3_4:77401208-77401227 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3_4:77401278-77401297 Msa0523930:intron 40.0%
GGTAGAGAAGAGATAGTTCT+GGG - chr3_4:77401344-77401363 None:intergenic 40.0%
AGAACTATCTCTTCTCTACC+CGG + chr3_4:77401344-77401363 Msa0523930:CDS 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3_4:77401382-77401401 None:intergenic 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3_4:77401595-77401614 None:intergenic 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3_4:77401700-77401719 Msa0523930:CDS 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3_4:77401722-77401741 Msa0523930:CDS 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3_4:77401793-77401812 Msa0523930:CDS 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3_4:77401798-77401817 Msa0523930:CDS 40.0%
GATGAGAAAGAGGAAAGGAA+TGG + chr3_4:77401803-77401822 Msa0523930:CDS 40.0%
AGAAAGAGGAAAGGAATGGT+TGG + chr3_4:77401807-77401826 Msa0523930:CDS 40.0%
TCAGCAAGTGGTAACCATTT+GGG - chr3_4:77401859-77401878 None:intergenic 40.0%
CTAATGAATGACTCAGCAAG+TGG - chr3_4:77401871-77401890 None:intergenic 40.0%
AAAAGTAACCCGGTTCAAAC+CGG - chr3_4:77401915-77401934 None:intergenic 40.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3_4:77401122-77401141 None:intergenic 40.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3_4:77401208-77401227 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3_4:77401278-77401297 Msa0523930:intron 40.0%
GGTAGAGAAGAGATAGTTCT+GGG - chr3_4:77401344-77401363 None:intergenic 40.0%
AGAACTATCTCTTCTCTACC+CGG + chr3_4:77401344-77401363 Msa0523930:CDS 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3_4:77401382-77401401 None:intergenic 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3_4:77401595-77401614 None:intergenic 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3_4:77401700-77401719 Msa0523930:CDS 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3_4:77401722-77401741 Msa0523930:CDS 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3_4:77401793-77401812 Msa0523930:CDS 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3_4:77401798-77401817 Msa0523930:CDS 40.0%
GATGAGAAAGAGGAAAGGAA+TGG + chr3_4:77401803-77401822 Msa0523930:CDS 40.0%
AGAAAGAGGAAAGGAATGGT+TGG + chr3_4:77401807-77401826 Msa0523930:CDS 40.0%
TCAGCAAGTGGTAACCATTT+GGG - chr3_4:77401859-77401878 None:intergenic 40.0%
CTAATGAATGACTCAGCAAG+TGG - chr3_4:77401871-77401890 None:intergenic 40.0%
AAAAGTAACCCGGTTCAAAC+CGG - chr3_4:77401915-77401934 None:intergenic 40.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3_4:77400985-77401004 Msa0523930:CDS 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3_4:77401017-77401036 None:intergenic 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3_4:77401037-77401056 Msa0523930:CDS 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3_4:77401061-77401080 Msa0523930:CDS 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3_4:77401161-77401180 None:intergenic 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3_4:77401194-77401213 None:intergenic 45.0%
GGGTAGAGAAGAGATAGTTC+TGG - chr3_4:77401345-77401364 None:intergenic 45.0%
ACAGACGGTGACCGAAAAAA+CGG - chr3_4:77401516-77401535 None:intergenic 45.0%
!!! GGTCACCGTCTGTTGTTTTT+GGG + chr3_4:77401523-77401542 Msa0523930:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3_4:77401524-77401543 Msa0523930:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3_4:77401525-77401544 Msa0523930:CDS 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3_4:77401552-77401571 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3_4:77401560-77401579 Msa0523930:CDS 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3_4:77401596-77401615 None:intergenic 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3_4:77401598-77401617 Msa0523930:CDS 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3_4:77401669-77401688 None:intergenic 45.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3_4:77401678-77401697 Msa0523930:CDS 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3_4:77401696-77401715 Msa0523930:CDS 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3_4:77401781-77401800 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3_4:77401779-77401798 Msa0523930:CDS 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3_4:77401788-77401807 None:intergenic 45.0%
CTCAGCAAGTGGTAACCATT+TGG - chr3_4:77401860-77401879 None:intergenic 45.0%
AAAGTAACCCGGTTCAAACC+GGG - chr3_4:77401914-77401933 None:intergenic 45.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3_4:77400985-77401004 Msa0523930:CDS 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3_4:77401017-77401036 None:intergenic 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3_4:77401037-77401056 Msa0523930:CDS 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3_4:77401061-77401080 Msa0523930:CDS 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3_4:77401161-77401180 None:intergenic 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3_4:77401194-77401213 None:intergenic 45.0%
GGGTAGAGAAGAGATAGTTC+TGG - chr3_4:77401345-77401364 None:intergenic 45.0%
ACAGACGGTGACCGAAAAAA+CGG - chr3_4:77401516-77401535 None:intergenic 45.0%
!!! GGTCACCGTCTGTTGTTTTT+GGG + chr3_4:77401523-77401542 Msa0523930:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3_4:77401524-77401543 Msa0523930:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3_4:77401525-77401544 Msa0523930:CDS 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3_4:77401552-77401571 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3_4:77401560-77401579 Msa0523930:CDS 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3_4:77401596-77401615 None:intergenic 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3_4:77401598-77401617 Msa0523930:CDS 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3_4:77401669-77401688 None:intergenic 45.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3_4:77401678-77401697 Msa0523930:CDS 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3_4:77401696-77401715 Msa0523930:CDS 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3_4:77401781-77401800 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3_4:77401779-77401798 Msa0523930:CDS 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3_4:77401788-77401807 None:intergenic 45.0%
CTCAGCAAGTGGTAACCATT+TGG - chr3_4:77401860-77401879 None:intergenic 45.0%
AAAGTAACCCGGTTCAAACC+GGG - chr3_4:77401914-77401933 None:intergenic 45.0%
AGGAGAAACGGCAGTGAAGT+TGG - chr3_4:77400743-77400762 None:intergenic 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3_4:77400958-77400977 Msa0523930:intron 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3_4:77401032-77401051 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3_4:77401040-77401059 Msa0523930:CDS 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3_4:77401078-77401097 None:intergenic 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3_4:77401158-77401177 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3_4:77401282-77401301 Msa0523930:intron 50.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3_4:77401482-77401501 Msa0523930:CDS 50.0%
CAGACGGTGACCGAAAAAAC+GGG - chr3_4:77401515-77401534 None:intergenic 50.0%
!!! CGGTCACCGTCTGTTGTTTT+TGG + chr3_4:77401522-77401541 Msa0523930:CDS 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3_4:77401531-77401550 None:intergenic 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3_4:77401679-77401698 Msa0523930:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3_4:77401748-77401767 None:intergenic 50.0%
GAGGAAAGGAATGGTTGGAC+CGG + chr3_4:77401812-77401831 Msa0523930:CDS 50.0%
!! TTTACCGGCTCAGACCCAAA+TGG + chr3_4:77401842-77401861 Msa0523930:CDS 50.0%
GTAACCATTTGGGTCTGAGC+CGG - chr3_4:77401849-77401868 None:intergenic 50.0%
TAGGAGATACTCCACCAACC+CGG + chr3_4:77401893-77401912 Msa0523930:three_prime_UTR 50.0%
GTAGTGCTAGTCAGCTAGCT+AGG + chr3_4:77401962-77401981 Msa0523930:three_prime_UTR 50.0%
AGGAGAAACGGCAGTGAAGT+TGG - chr3_4:77400743-77400762 None:intergenic 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3_4:77400958-77400977 Msa0523930:intron 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3_4:77401032-77401051 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3_4:77401040-77401059 Msa0523930:CDS 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3_4:77401078-77401097 None:intergenic 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3_4:77401158-77401177 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3_4:77401282-77401301 Msa0523930:intron 50.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3_4:77401482-77401501 Msa0523930:CDS 50.0%
CAGACGGTGACCGAAAAAAC+GGG - chr3_4:77401515-77401534 None:intergenic 50.0%
!!! CGGTCACCGTCTGTTGTTTT+TGG + chr3_4:77401522-77401541 Msa0523930:CDS 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3_4:77401531-77401550 None:intergenic 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3_4:77401679-77401698 Msa0523930:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3_4:77401748-77401767 None:intergenic 50.0%
GAGGAAAGGAATGGTTGGAC+CGG + chr3_4:77401812-77401831 Msa0523930:CDS 50.0%
!! TTTACCGGCTCAGACCCAAA+TGG + chr3_4:77401842-77401861 Msa0523930:CDS 50.0%
GTAACCATTTGGGTCTGAGC+CGG - chr3_4:77401849-77401868 None:intergenic 50.0%
TAGGAGATACTCCACCAACC+CGG + chr3_4:77401893-77401912 Msa0523930:three_prime_UTR 50.0%
GTAGTGCTAGTCAGCTAGCT+AGG + chr3_4:77401962-77401981 Msa0523930:three_prime_UTR 50.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3_4:77401042-77401061 None:intergenic 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3_4:77401045-77401064 None:intergenic 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3_4:77401292-77401311 Msa0523930:CDS 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3_4:77401293-77401312 Msa0523930:CDS 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3_4:77401457-77401476 None:intergenic 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3_4:77401481-77401500 Msa0523930:CDS 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3_4:77401569-77401588 Msa0523930:CDS 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3_4:77401580-77401599 None:intergenic 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3_4:77401582-77401601 Msa0523930:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3_4:77401614-77401633 Msa0523930:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3_4:77401664-77401683 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3_4:77401680-77401699 Msa0523930:CDS 55.0%
AACCCCGCACGCGTTACAAA+GGG - chr3_4:77401685-77401704 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3_4:77401744-77401763 None:intergenic 55.0%
TTGGGTCTGAGCCGGTAAAC+CGG - chr3_4:77401841-77401860 None:intergenic 55.0%
! TCCACCAACCCGGTTTGAAC+CGG + chr3_4:77401903-77401922 Msa0523930:three_prime_UTR 55.0%
TAACCCGGTTCAAACCGGGT+TGG - chr3_4:77401910-77401929 None:intergenic 55.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3_4:77401042-77401061 None:intergenic 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3_4:77401045-77401064 None:intergenic 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3_4:77401292-77401311 Msa0523930:CDS 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3_4:77401293-77401312 Msa0523930:CDS 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3_4:77401457-77401476 None:intergenic 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3_4:77401481-77401500 Msa0523930:CDS 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3_4:77401569-77401588 Msa0523930:CDS 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3_4:77401580-77401599 None:intergenic 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3_4:77401582-77401601 Msa0523930:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3_4:77401614-77401633 Msa0523930:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3_4:77401664-77401683 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3_4:77401680-77401699 Msa0523930:CDS 55.0%
AACCCCGCACGCGTTACAAA+GGG - chr3_4:77401685-77401704 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3_4:77401744-77401763 None:intergenic 55.0%
TTGGGTCTGAGCCGGTAAAC+CGG - chr3_4:77401841-77401860 None:intergenic 55.0%
! TCCACCAACCCGGTTTGAAC+CGG + chr3_4:77401903-77401922 Msa0523930:three_prime_UTR 55.0%
TAACCCGGTTCAAACCGGGT+TGG - chr3_4:77401910-77401929 None:intergenic 55.0%
TAGCTTCACCGCCAACACGG+TGG + chr3_4:77400988-77401007 Msa0523930:CDS 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3_4:77401002-77401021 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3_4:77401287-77401306 Msa0523930:intron 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3_4:77401489-77401508 None:intergenic 60.0%
!!! GGGCTCAGCGCCCGTTTTTT+CGG + chr3_4:77401502-77401521 Msa0523930:CDS 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3_4:77401579-77401598 None:intergenic 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3_4:77401581-77401600 Msa0523930:CDS 60.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3_4:77401642-77401661 Msa0523930:CDS 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3_4:77401651-77401670 None:intergenic 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3_4:77401651-77401670 Msa0523930:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3_4:77401686-77401705 None:intergenic 60.0%
GGAATGGTTGGACCGGAACC+CGG + chr3_4:77401819-77401838 Msa0523930:CDS 60.0%
TGGACCGGAACCCGGTTTAC+CGG + chr3_4:77401827-77401846 Msa0523930:CDS 60.0%
TGAGCCGGTAAACCGGGTTC+CGG - chr3_4:77401834-77401853 None:intergenic 60.0%
TGGGTCTGAGCCGGTAAACC+GGG - chr3_4:77401840-77401859 None:intergenic 60.0%
! CCACCAACCCGGTTTGAACC+GGG + chr3_4:77401904-77401923 Msa0523930:three_prime_UTR 60.0%
GCAGCAGCAGCAGCAGGTAA+CGG + chr3_4:77401984-77402003 Msa0523930:three_prime_UTR 60.0%
TAGCTTCACCGCCAACACGG+TGG + chr3_4:77400988-77401007 Msa0523930:CDS 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3_4:77401002-77401021 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3_4:77401287-77401306 Msa0523930:intron 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3_4:77401489-77401508 None:intergenic 60.0%
!!! GGGCTCAGCGCCCGTTTTTT+CGG + chr3_4:77401502-77401521 Msa0523930:CDS 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3_4:77401579-77401598 None:intergenic 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3_4:77401581-77401600 Msa0523930:CDS 60.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3_4:77401642-77401661 Msa0523930:CDS 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3_4:77401651-77401670 None:intergenic 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3_4:77401651-77401670 Msa0523930:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3_4:77401686-77401705 None:intergenic 60.0%
GGAATGGTTGGACCGGAACC+CGG + chr3_4:77401819-77401838 Msa0523930:CDS 60.0%
TGGACCGGAACCCGGTTTAC+CGG + chr3_4:77401827-77401846 Msa0523930:CDS 60.0%
TGAGCCGGTAAACCGGGTTC+CGG - chr3_4:77401834-77401853 None:intergenic 60.0%
TGGGTCTGAGCCGGTAAACC+GGG - chr3_4:77401840-77401859 None:intergenic 60.0%
! CCACCAACCCGGTTTGAACC+GGG + chr3_4:77401904-77401923 Msa0523930:three_prime_UTR 60.0%
GCAGCAGCAGCAGCAGGTAA+CGG + chr3_4:77401984-77402003 Msa0523930:three_prime_UTR 60.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3_4:77400995-77401014 Msa0523930:CDS 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3_4:77400999-77401018 None:intergenic 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3_4:77401490-77401509 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3_4:77401635-77401654 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3_4:77401634-77401653 Msa0523930:CDS 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3_4:77401650-77401669 Msa0523930:CDS 65.0%
! CCCGGTTCAAACCGGGTTGG+TGG - chr3_4:77401907-77401926 None:intergenic 65.0%
AGCTAGGCAGCAGCAGCAGC+AGG + chr3_4:77401978-77401997 Msa0523930:three_prime_UTR 65.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3_4:77400995-77401014 Msa0523930:CDS 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3_4:77400999-77401018 None:intergenic 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3_4:77401490-77401509 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3_4:77401635-77401654 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3_4:77401634-77401653 Msa0523930:CDS 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3_4:77401650-77401669 Msa0523930:CDS 65.0%
! CCCGGTTCAAACCGGGTTGG+TGG - chr3_4:77401907-77401926 None:intergenic 65.0%
AGCTAGGCAGCAGCAGCAGC+AGG + chr3_4:77401978-77401997 Msa0523930:three_prime_UTR 65.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3_4:77401494-77401513 None:intergenic 70.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3_4:77401494-77401513 None:intergenic 70.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3_4:77401495-77401514 None:intergenic 75.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3_4:77401495-77401514 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77400625 77402093 77400625 ID=Msa0523930;Name=Msa0523930
chr3_4 mRNA 77400625 77402093 77400625 ID=Msa0523930-mRNA-1;Parent=Msa0523930;Name=Msa0523930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.2|1|0.25|0.2|5|215|337
chr3_4 exon 77400625 77400672 77400625 ID=Msa0523930-mRNA-1:exon:22686;Parent=Msa0523930-mRNA-1
chr3_4 exon 77400717 77400797 77400717 ID=Msa0523930-mRNA-1:exon:22687;Parent=Msa0523930-mRNA-1
chr3_4 exon 77400901 77400951 77400901 ID=Msa0523930-mRNA-1:exon:22688;Parent=Msa0523930-mRNA-1
chr3_4 exon 77400965 77401207 77400965 ID=Msa0523930-mRNA-1:exon:22689;Parent=Msa0523930-mRNA-1
chr3_4 exon 77401288 77402093 77401288 ID=Msa0523930-mRNA-1:exon:22690;Parent=Msa0523930-mRNA-1
chr3_4 CDS 77400625 77400672 77400625 ID=Msa0523930-mRNA-1:cds;Parent=Msa0523930-mRNA-1
chr3_4 CDS 77400717 77400797 77400717 ID=Msa0523930-mRNA-1:cds;Parent=Msa0523930-mRNA-1
chr3_4 CDS 77400901 77400951 77400901 ID=Msa0523930-mRNA-1:cds;Parent=Msa0523930-mRNA-1
chr3_4 CDS 77400965 77401207 77400965 ID=Msa0523930-mRNA-1:cds;Parent=Msa0523930-mRNA-1
chr3_4 CDS 77401288 77401878 77401288 ID=Msa0523930-mRNA-1:cds;Parent=Msa0523930-mRNA-1
chr3_4 three_prime_UTR 77401879 77402093 77401879 ID=Msa0523930-mRNA-1:three_prime_utr;Parent=Msa0523930-mRNA-1
Gene Sequence

>Msa0523930

ATGCTGGATCACCCTTTTTACAAAGCAAGATATGCTAGCTTAGCTACTAGCATAGAGAAGAAAGAAAACTTCCAACTTCACTGCCGTTTCTCCTTCGATTCTTATTCTTCTTCTTCTTCTTTTTCACAGAAAAATGGAGTTTGCAGTAGCAAAAGCTTTGAAACCGAGTTTAAGAAGGGACAAACTCTCGGCGAGGAACTTTTTAGCTTCACCGCCAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTCTCTAACGGCGGTGATATTCTTCACCACGACGGAGATGAAGAAGAGAAAGATAGCAGTTTATCTCTTTCCTCTCAATCACTCTCAGAAGATAACAACTCAAATTCCACCGACGCTTCCTTTGATTCTTCCATTTTCTCAACCGAATTACTCGTTCCCGATGATGACGTGGCAGGTCTGGAATGGGTTTCACACTTTGTAGATGATTCTCTCCCAGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACACGTGTCCTCAAAAACATGAAACTCAGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACGAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCGGTCACCGTCTGTTGTTTTTGGGGGACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCTTGAGGCCCAAGAAGAGGGTCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTGGGTGCTAAAACCCTTTGTAACGCGTGCGGGGTTCGTTATAAATCAGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGAAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACCACTTGCTGA
Protein sequence

>Msa0523930

MLDHPFYKARYASLATSIEKKENFQLHCRFSFDSYSSSSSFSQKNGVCSSKSFETEFKKGQTLGEELFSFTANTVVAGEDFSVDDLLDFSNGGDILHHDGDEEEKDSSLSLSSQSLSEDNNSNSTDASFDSSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNTCPQKHETQHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFRSPSVVFGGPPAKKQKKKPEALEAQEEGQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVTTC*