Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387540 | XP_003603296.2 | 94.891 | 274 | 14 | 0 | 2 | 275 | 1 | 274 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387540 | sp|Q9S7H4|CM2_ARATH | 57.198 | 257 | 105 | 2 | 24 | 275 | 9 | 265 | 2.95e-98 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387540 | G7J9U7 | 94.891 | 274 | 14 | 0 | 2 | 275 | 1 | 274 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387540 | Msa0432040 | 0.912849 | 1.215649e-83 | -8.615850e-47 |
| Msa0387540 | Msa0912230 | 0.802457 | 5.560682e-49 | -8.615850e-47 |
| Msa0387540 | Msa1374760 | 0.801417 | 9.093243e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387540 | MtrunA17_Chr1g0150241 | 64.940 | 251 | 85 | 2 | 28 | 275 | 4 | 254 | 6.79e-122 | 348 |
| Msa0387540 | MtrunA17_Chr3g0136931 | 82.979 | 141 | 21 | 1 | 2 | 139 | 1 | 141 | 2.18e-82 | 244 |
| Msa0387540 | MtrunA17_Chr6g0453931 | 47.638 | 254 | 128 | 3 | 26 | 275 | 64 | 316 | 2.14e-78 | 240 |
| Msa0387540 | MtrunA17_Chr5g0418321 | 48.594 | 249 | 119 | 4 | 33 | 275 | 73 | 318 | 5.33e-75 | 231 |
| Msa0387540 | MtrunA17_Chr3g0136921 | 96.226 | 106 | 4 | 0 | 170 | 275 | 2 | 107 | 6.90e-70 | 211 |
| Msa0387540 | MtrunA17_Chr8g0357321 | 40.260 | 77 | 36 | 2 | 200 | 275 | 4 | 71 | 5.89e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387540 | AT5G10870.1 | 57.198 | 257 | 105 | 2 | 24 | 275 | 9 | 265 | 3.00e-99 | 291 |
| Msa0387540 | AT1G69370.1 | 48.413 | 252 | 125 | 3 | 29 | 275 | 65 | 316 | 1.28e-78 | 241 |
| Msa0387540 | AT3G29200.1 | 44.928 | 276 | 140 | 3 | 11 | 275 | 66 | 340 | 8.07e-77 | 237 |
Find 61 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGCAGCTTCAATTTA+TGG | 0.102058 | 3_1:-91510097 | Msa0387540:CDS |
| TATCTTGATTGTGCACTATT+TGG | 0.178263 | 3_1:+91506658 | None:intergenic |
| CATACATGCTGTGTTAGATT+TGG | 0.239839 | 3_1:-91510140 | Msa0387540:five_prime_UTR |
| CAAATTGTTTCTACTTGTTA+AGG | 0.249520 | 3_1:-91506550 | None:intergenic |
| GTTGAAAAGTAATGTCAATT+AGG | 0.249884 | 3_1:+91510194 | None:intergenic |
| TATACCTTGGCACGAATTAA+AGG | 0.253511 | 3_1:+91507160 | None:intergenic |
| GGTGGTAAAATTCCTTTATA+AGG | 0.277992 | 3_1:+91508321 | None:intergenic |
| AAGATGCCCTCACTGATTCT+AGG | 0.300800 | 3_1:+91510001 | None:intergenic |
| AGCAACTACCTTGGCTTGAA+TGG | 0.341924 | 3_1:+91509834 | None:intergenic |
| ATCTCTAGAAGGATTCATTA+TGG | 0.362754 | 3_1:-91507232 | Msa0387540:CDS |
| CCTGAAGAAAATCCTTATAA+AGG | 0.368752 | 3_1:-91508333 | Msa0387540:CDS |
| AATGTCAATTAGGGTGTGTT+TGG | 0.379597 | 3_1:+91510204 | None:intergenic |
| ATACATGCTGTGTTAGATTT+GGG | 0.382528 | 3_1:-91510139 | Msa0387540:five_prime_UTR |
| GAAAAGAAGGCCATGGTGTT+TGG | 0.389912 | 3_1:-91506908 | Msa0387540:CDS |
| AAATTGTTTCTACTTGTTAA+GGG | 0.390134 | 3_1:-91506549 | None:intergenic |
| TCAATTAATAGTTCTACTAA+TGG | 0.393956 | 3_1:+91506734 | None:intergenic |
| AACGACATCGAGCAACGAAC+CGG | 0.410241 | 3_1:+91509873 | None:intergenic |
| TTGAAAAGTAATGTCAATTA+GGG | 0.413991 | 3_1:+91510195 | None:intergenic |
| TTCCCTTGACATTATGATCA+AGG | 0.414367 | 3_1:+91506873 | None:intergenic |
| TATAAGCGAGATACTATTGC+TGG | 0.416007 | 3_1:+91506836 | None:intergenic |
| TTTGTTGCTTTCGGGGATGA+TGG | 0.428043 | 3_1:-91507528 | Msa0387540:CDS |
| AGAAGAGATAGTTGTGAAGA+GGG | 0.446517 | 3_1:-91506933 | Msa0387540:CDS |
| TAGAAGAGATAGTTGTGAAG+AGG | 0.455201 | 3_1:-91506934 | Msa0387540:CDS |
| GCGTGTATATTATTTGAAGA+AGG | 0.464493 | 3_1:-91506632 | Msa0387540:three_prime_UTR |
| TGGTAGGTGGGAGAATTAAG+AGG | 0.466502 | 3_1:+91509925 | None:intergenic |
| ATTCGCAGGCCATCTCTAGA+AGG | 0.470601 | 3_1:-91507243 | Msa0387540:intron |
| TGTGAAGAGGGTTGAAAAGA+AGG | 0.489246 | 3_1:-91506921 | Msa0387540:CDS |
| TTAACATAAACAAGAACATA+AGG | 0.494659 | 3_1:-91507581 | Msa0387540:CDS |
| AGACACAGATCAACTGCAAA+TGG | 0.502992 | 3_1:-91510042 | Msa0387540:CDS |
| GGTAGGTGGGAGAATTAAGA+GGG | 0.519339 | 3_1:+91509926 | None:intergenic |
| GCAGCTTCAATTTATGGCTG+TGG | 0.525817 | 3_1:-91510091 | Msa0387540:CDS |
| AATCGTGTACAATTAAAGTC+AGG | 0.531092 | 3_1:+91506583 | None:intergenic |
| CTTGTTTATGTTAATCGAAG+CGG | 0.533853 | 3_1:+91507590 | None:intergenic |
| TTGTAATGTGGCACAATTGA+GGG | 0.543976 | 3_1:+91508300 | None:intergenic |
| TATCTCGCTTATACAAGGAA+TGG | 0.544751 | 3_1:-91506826 | Msa0387540:CDS |
| AGATGCCCTCACTGATTCTA+GGG | 0.546079 | 3_1:+91510002 | None:intergenic |
| GAATGGAAGCATAATGTTGA+TGG | 0.547788 | 3_1:+91509905 | None:intergenic |
| GCATAATGTTGATGGTAGGT+GGG | 0.554786 | 3_1:+91509913 | None:intergenic |
| TCTGCAAGCTGAAACAGAAA+TGG | 0.557896 | 3_1:+91510172 | None:intergenic |
| TTATGGAAAGTTTGTAGCTG+AGG | 0.563769 | 3_1:-91507215 | Msa0387540:CDS |
| AATAGTATCTCGCTTATACA+AGG | 0.569124 | 3_1:-91506831 | Msa0387540:CDS |
| ATAATGAATCCTTCTAGAGA+TGG | 0.570026 | 3_1:+91507234 | None:intergenic |
| TGAGCCTTTAATTCGTGCCA+AGG | 0.575950 | 3_1:-91507164 | Msa0387540:intron |
| GAGCCTTGATCATAATGTCA+AGG | 0.579674 | 3_1:-91506876 | Msa0387540:CDS |
| TGTTATGCTGTTAAGCTGTA+CGG | 0.579831 | 3_1:-91510067 | Msa0387540:CDS |
| AGCATAATGTTGATGGTAGG+TGG | 0.585994 | 3_1:+91509912 | None:intergenic |
| TACTGAAGCCATTCAAGCCA+AGG | 0.587805 | 3_1:-91509842 | Msa0387540:intron |
| TAATGTCAAGGGAAATTACA+AGG | 0.595741 | 3_1:-91506864 | Msa0387540:CDS |
| AGCCTTGATCATAATGTCAA+GGG | 0.598688 | 3_1:-91506875 | Msa0387540:CDS |
| CGAACCGGAAAAGTGAGGAA+TGG | 0.610407 | 3_1:+91509888 | None:intergenic |
| GCCACATTACAACTTCTCAC+AGG | 0.612065 | 3_1:-91508289 | Msa0387540:intron |
| GGAAGCATAATGTTGATGGT+AGG | 0.616006 | 3_1:+91509909 | None:intergenic |
| AGCAACGAACCGGAAAAGTG+AGG | 0.623308 | 3_1:+91509883 | None:intergenic |
| GAGGGTTGAAAAGAAGGCCA+TGG | 0.631982 | 3_1:-91506915 | Msa0387540:CDS |
| CACTTCTTGACCAAACACCA+TGG | 0.632219 | 3_1:+91506898 | None:intergenic |
| GTTGTAATGTGGCACAATTG+AGG | 0.646000 | 3_1:+91508299 | None:intergenic |
| ACCTGTGAGAAGTTGTAATG+TGG | 0.704606 | 3_1:+91508288 | None:intergenic |
| AATACACCCTAGAATCAGTG+AGG | 0.710690 | 3_1:-91510008 | Msa0387540:CDS |
| ATACACCCTAGAATCAGTGA+GGG | 0.715519 | 3_1:-91510007 | Msa0387540:CDS |
| TAATGTGGCACAATTGAGGG+TGG | 0.727705 | 3_1:+91508303 | None:intergenic |
| ATTAAAGGCTCATAGTCACG+AGG | 0.752224 | 3_1:+91507175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTAAAAGTAATATTT+TGG | + | chr3_1:91507771-91507790 | None:intergenic | 10.0% |
| !! | TTATTTATCACAAAAAATTT+AGG | + | chr3_1:91508316-91508335 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTGATAAATAAAT+TGG | - | chr3_1:91508318-91508337 | Msa0387540:CDS | 10.0% |
| !!! | ATTTTTCTAAAAATAATCTT+TGG | - | chr3_1:91508723-91508742 | Msa0387540:intron | 10.0% |
| !!! | GTTTTGTATTAGAATTTATT+GGG | - | chr3_1:91506992-91507011 | Msa0387540:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAACCAG+AGG | + | chr3_1:91507111-91507130 | None:intergenic | 15.0% |
| !!! | ATAAACAATATTGATTTCAA+TGG | - | chr3_1:91507269-91507288 | Msa0387540:intron | 15.0% |
| !!! | GATCTAATGATATTTTAAAA+GGG | - | chr3_1:91507400-91507419 | Msa0387540:intron | 15.0% |
| !! | AAATAAAGCCAAAAATAAAT+AGG | + | chr3_1:91507493-91507512 | None:intergenic | 15.0% |
| !!! | ACACATTCTTTATTTTTTTT+GGG | + | chr3_1:91507604-91507623 | None:intergenic | 15.0% |
| !!! | CATTTTAAAACAAATTTTGT+TGG | + | chr3_1:91507668-91507687 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3_1:91507795-91507814 | None:intergenic | 15.0% |
| !! | TTAAGAATCTTAAATACAAT+AGG | - | chr3_1:91507996-91508015 | Msa0387540:intron | 15.0% |
| !!! | TAAGACAATTTTGTTATATT+TGG | - | chr3_1:91508673-91508692 | Msa0387540:intron | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | + | chr3_1:91509502-91509521 | None:intergenic | 15.0% |
| !!! | TTTTTGTGTAAAAATTGAAA+CGG | - | chr3_1:91509743-91509762 | Msa0387540:intron | 15.0% |
| !! | TTGAAAAGTAATGTCAATTA+GGG | + | chr3_1:91506568-91506587 | None:intergenic | 20.0% |
| !!! | GGTTTTGTATTAGAATTTAT+TGG | - | chr3_1:91506991-91507010 | Msa0387540:intron | 20.0% |
| !! | ATAAATAAAACAAGATGCAT+AGG | + | chr3_1:91507192-91507211 | None:intergenic | 20.0% |
| !! | ATAGATGATTAAAATACAGT+AGG | - | chr3_1:91507348-91507367 | Msa0387540:intron | 20.0% |
| !! | ATGTTAGTGGAAAATAATAT+AGG | - | chr3_1:91507378-91507397 | Msa0387540:intron | 20.0% |
| !!! | GGATCTAATGATATTTTAAA+AGG | - | chr3_1:91507399-91507418 | Msa0387540:intron | 20.0% |
| !!! | GACACATTCTTTATTTTTTT+TGG | + | chr3_1:91507605-91507624 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3_1:91507708-91507727 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3_1:91507785-91507804 | Msa0387540:intron | 20.0% |
| !!! | TTCATTAAATTTTCATTTCG+TGG | + | chr3_1:91508140-91508159 | None:intergenic | 20.0% |
| !! | TCAAAATTGTATGAAAATCA+AGG | + | chr3_1:91508190-91508209 | None:intergenic | 20.0% |
| !!! | TTTTGTGATAAATAAATTGG+TGG | - | chr3_1:91508321-91508340 | Msa0387540:CDS | 20.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | - | chr3_1:91508391-91508410 | Msa0387540:intron | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | - | chr3_1:91508541-91508560 | Msa0387540:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+TGG | - | chr3_1:91508731-91508750 | Msa0387540:intron | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | + | chr3_1:91508775-91508794 | None:intergenic | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | + | chr3_1:91508808-91508827 | None:intergenic | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | + | chr3_1:91508809-91508828 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | - | chr3_1:91508844-91508863 | Msa0387540:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | - | chr3_1:91508854-91508873 | Msa0387540:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | + | chr3_1:91509073-91509092 | None:intergenic | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | - | chr3_1:91509179-91509198 | Msa0387540:intron | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | - | chr3_1:91509288-91509307 | Msa0387540:intron | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | - | chr3_1:91509355-91509374 | Msa0387540:intron | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | + | chr3_1:91509431-91509450 | None:intergenic | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | - | chr3_1:91509503-91509522 | Msa0387540:intron | 20.0% |
| !!! | TCAATTAATAGTTCTACTAA+TGG | + | chr3_1:91510029-91510048 | None:intergenic | 20.0% |
| ! | GTTGAAAAGTAATGTCAATT+AGG | + | chr3_1:91506569-91506588 | None:intergenic | 25.0% |
| !! | CTGGAAATCTTTTATGTTAA+TGG | - | chr3_1:91506970-91506989 | Msa0387540:CDS | 25.0% |
| ! | TCCAAAACTCTTCAATTTAT+CGG | - | chr3_1:91507056-91507075 | Msa0387540:intron | 25.0% |
| !! | CGTTTAAAACTTAAATGTGA+GGG | + | chr3_1:91507234-91507253 | None:intergenic | 25.0% |
| !!! | CCTCACATTTAAGTTTTAAA+CGG | - | chr3_1:91507232-91507251 | Msa0387540:CDS | 25.0% |
| !!! | AGAGGTTACCTATTTATTTT+TGG | - | chr3_1:91507482-91507501 | Msa0387540:intron | 25.0% |
| ! | ATGCAACAATAAAGAATGTA+TGG | - | chr3_1:91507534-91507553 | Msa0387540:CDS | 25.0% |
| !!! | CATTCTTTATTTTTTTTGGG+TGG | + | chr3_1:91507601-91507620 | None:intergenic | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTT+AGG | + | chr3_1:91507876-91507895 | None:intergenic | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | - | chr3_1:91507877-91507896 | Msa0387540:intron | 25.0% |
| ! | CTTTCATTAATTCGATTGTA+AGG | + | chr3_1:91507938-91507957 | None:intergenic | 25.0% |
| ! | TCGAATTAATGAAAGAGAAA+TGG | - | chr3_1:91507943-91507962 | Msa0387540:intron | 25.0% |
| !! | TATTTCAATTTTCACTGCAT+TGG | + | chr3_1:91508053-91508072 | None:intergenic | 25.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | + | chr3_1:91508429-91508448 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | + | chr3_1:91508807-91508826 | None:intergenic | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | + | chr3_1:91508970-91508989 | None:intergenic | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | + | chr3_1:91508971-91508990 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | - | chr3_1:91509066-91509085 | Msa0387540:intron | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | - | chr3_1:91509107-91509126 | Msa0387540:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | + | chr3_1:91509114-91509133 | None:intergenic | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | + | chr3_1:91509350-91509369 | None:intergenic | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | + | chr3_1:91509351-91509370 | None:intergenic | 25.0% |
| !!! | CGTTTTTTAAAAGCAAAACT+TGG | - | chr3_1:91509700-91509719 | Msa0387540:intron | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | - | chr3_1:91509750-91509769 | Msa0387540:intron | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | + | chr3_1:91509966-91509985 | None:intergenic | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | + | chr3_1:91509967-91509986 | None:intergenic | 25.0% |
| ! | TTGAAGAAGGAAAAACTATA+CGG | - | chr3_1:91510141-91510160 | Msa0387540:five_prime_UTR | 25.0% |
| ATACATGCTGTGTTAGATTT+GGG | - | chr3_1:91506621-91506640 | Msa0387540:three_prime_UTR | 30.0% | |
| ! | ATTCCTCTCATATTTGAAAC+TGG | - | chr3_1:91506951-91506970 | Msa0387540:CDS | 30.0% |
| TTTCCAGTTTCAAATATGAG+AGG | + | chr3_1:91506957-91506976 | None:intergenic | 30.0% | |
| !!! | AATTGAAGAGTTTTGGAGTT+TGG | + | chr3_1:91507053-91507072 | None:intergenic | 30.0% |
| ! | TCCGATAAATTGAAGAGTTT+TGG | + | chr3_1:91507060-91507079 | None:intergenic | 30.0% |
| AAAAAAAGAGTAGGAAGATG+CGG | + | chr3_1:91507083-91507102 | None:intergenic | 30.0% | |
| GAGGATAAGAAAAAAAGAGT+AGG | + | chr3_1:91507092-91507111 | None:intergenic | 30.0% | |
| !!! | ACTCTTTTTTTCTTATCCTC+TGG | - | chr3_1:91507092-91507111 | Msa0387540:intron | 30.0% |
| TTAAAACTTAAATGTGAGGG+AGG | + | chr3_1:91507231-91507250 | None:intergenic | 30.0% | |
| ! | CCGTTTAAAACTTAAATGTG+AGG | + | chr3_1:91507235-91507254 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | + | chr3_1:91507742-91507761 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | + | chr3_1:91507746-91507765 | None:intergenic | 30.0% |
| !!! | AACGACACTCATTTTAAAAC+GGG | - | chr3_1:91507878-91507897 | Msa0387540:intron | 30.0% |
| GATTGTAAGGACTAAATTGT+TGG | + | chr3_1:91507925-91507944 | None:intergenic | 30.0% | |
| ! | CCTTTATAAGGATTTTCTTC+AGG | + | chr3_1:91508430-91508449 | None:intergenic | 30.0% |
| CCTGAAGAAAATCCTTATAA+AGG | - | chr3_1:91508427-91508446 | Msa0387540:intron | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | + | chr3_1:91508442-91508461 | None:intergenic | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | - | chr3_1:91508510-91508529 | Msa0387540:intron | 30.0% | |
| !! | TCTAGGGCTATTTTATTTGA+TGG | - | chr3_1:91508526-91508545 | Msa0387540:intron | 30.0% |
| AAAGGAAGATATTGGAGAAA+AGG | - | chr3_1:91508862-91508881 | Msa0387540:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | - | chr3_1:91508863-91508882 | Msa0387540:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | + | chr3_1:91508924-91508943 | None:intergenic | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | - | chr3_1:91508922-91508941 | Msa0387540:intron | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | + | chr3_1:91508965-91508984 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | + | chr3_1:91509173-91509192 | None:intergenic | 30.0% | |
| ! | TAGTGATCTTTCAATTTTGC+AGG | - | chr3_1:91509276-91509295 | Msa0387540:intron | 30.0% |
| AAGATAAAGATGGATATCGT+AGG | - | chr3_1:91509365-91509384 | Msa0387540:intron | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | + | chr3_1:91509529-91509548 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | - | chr3_1:91509528-91509547 | Msa0387540:intron | 30.0% |
| TAATGTCAAGGGAAATTACA+AGG | - | chr3_1:91509896-91509915 | Msa0387540:CDS | 30.0% | |
| AATAGTATCTCGCTTATACA+AGG | - | chr3_1:91509929-91509948 | Msa0387540:CDS | 30.0% | |
| TATCTTGATTGTGCACTATT+TGG | + | chr3_1:91510105-91510124 | None:intergenic | 30.0% | |
| GCGTGTATATTATTTGAAGA+AGG | - | chr3_1:91510128-91510147 | Msa0387540:five_prime_UTR | 30.0% | |
| AATCGTGTACAATTAAAGTC+AGG | + | chr3_1:91510180-91510199 | None:intergenic | 30.0% | |
| AATGTCAATTAGGGTGTGTT+TGG | + | chr3_1:91506559-91506578 | None:intergenic | 35.0% | |
| CATACATGCTGTGTTAGATT+TGG | - | chr3_1:91506620-91506639 | Msa0387540:three_prime_UTR | 35.0% | |
| GATGAAGCAGCTTCAATTTA+TGG | - | chr3_1:91506663-91506682 | Msa0387540:three_prime_UTR | 35.0% | |
| TGTTATGCTGTTAAGCTGTA+CGG | - | chr3_1:91506693-91506712 | Msa0387540:three_prime_UTR | 35.0% | |
| ! | GAATGGAAGCATAATGTTGA+TGG | + | chr3_1:91506858-91506877 | None:intergenic | 35.0% |
| TTGTAAGGTTGAACAACATG+AGG | - | chr3_1:91507130-91507149 | Msa0387540:intron | 35.0% | |
| ! | AGTAGGTAAGAGTATGTTAG+TGG | - | chr3_1:91507365-91507384 | Msa0387540:intron | 35.0% |
| ! | GGAAGACAACACAGTTTTTA+AGG | + | chr3_1:91507455-91507474 | None:intergenic | 35.0% |
| AATAGGTAACCTCTTACATG+TGG | + | chr3_1:91507476-91507495 | None:intergenic | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | - | chr3_1:91507556-91507575 | Msa0387540:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | chr3_1:91507561-91507580 | Msa0387540:CDS | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | chr3_1:91507562-91507581 | Msa0387540:CDS | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | chr3_1:91507563-91507582 | Msa0387540:CDS | 35.0% | |
| !!! | TTTATTTTTTTTGGGTGGCC+GGG | + | chr3_1:91507596-91507615 | None:intergenic | 35.0% |
| !!! | CTTTATTTTTTTTGGGTGGC+CGG | + | chr3_1:91507597-91507616 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3_1:91507642-91507661 | None:intergenic | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | + | chr3_1:91507743-91507762 | None:intergenic | 35.0% |
| !!! | ACGACACTCATTTTAAAACG+GGG | - | chr3_1:91507879-91507898 | Msa0387540:intron | 35.0% |
| TTGTAATGTGGCACAATTGA+GGG | + | chr3_1:91508463-91508482 | None:intergenic | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | + | chr3_1:91508512-91508531 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | - | chr3_1:91508509-91508528 | Msa0387540:intron | 35.0% | |
| AGGAAGATATTGGAGAAAAG+GGG | - | chr3_1:91508864-91508883 | Msa0387540:intron | 35.0% | |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | - | chr3_1:91509311-91509330 | Msa0387540:intron | 35.0% |
| TTATGGAAAGTTTGTAGCTG+AGG | - | chr3_1:91509545-91509564 | Msa0387540:intron | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | + | chr3_1:91509603-91509622 | None:intergenic | 35.0% | |
| AACAAGATCACTGTATACCT+TGG | + | chr3_1:91509616-91509635 | None:intergenic | 35.0% | |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | - | chr3_1:91509764-91509783 | Msa0387540:intron | 35.0% |
| TAGAAGAGATAGTTGTGAAG+AGG | - | chr3_1:91509826-91509845 | Msa0387540:intron | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | - | chr3_1:91509827-91509846 | Msa0387540:intron | 35.0% | |
| AGCCTTGATCATAATGTCAA+GGG | - | chr3_1:91509885-91509904 | Msa0387540:CDS | 35.0% | |
| TTCCCTTGACATTATGATCA+AGG | + | chr3_1:91509890-91509909 | None:intergenic | 35.0% | |
| TATAAGCGAGATACTATTGC+TGG | + | chr3_1:91509927-91509946 | None:intergenic | 35.0% | |
| TATCTCGCTTATACAAGGAA+TGG | - | chr3_1:91509934-91509953 | Msa0387540:CDS | 35.0% | |
| TCTGCAAGCTGAAACAGAAA+TGG | + | chr3_1:91506591-91506610 | None:intergenic | 40.0% | |
| AGACACAGATCAACTGCAAA+TGG | - | chr3_1:91506718-91506737 | Msa0387540:three_prime_UTR | 40.0% | |
| AATACACCCTAGAATCAGTG+AGG | - | chr3_1:91506752-91506771 | Msa0387540:exon | 40.0% | |
| ATACACCCTAGAATCAGTGA+GGG | - | chr3_1:91506753-91506772 | Msa0387540:exon | 40.0% | |
| !! | GCATAATGTTGATGGTAGGT+GGG | + | chr3_1:91506850-91506869 | None:intergenic | 40.0% |
| !! | AGCATAATGTTGATGGTAGG+TGG | + | chr3_1:91506851-91506870 | None:intergenic | 40.0% |
| !! | GGAAGCATAATGTTGATGGT+AGG | + | chr3_1:91506854-91506873 | None:intergenic | 40.0% |
| GAGGAATTAAGCAACTACCT+TGG | + | chr3_1:91506938-91506957 | None:intergenic | 40.0% | |
| TGTTGTCTTCCACATGTAAG+AGG | - | chr3_1:91507464-91507483 | Msa0387540:intron | 40.0% | |
| !!! | TTATTTTTTTTGGGTGGCCG+GGG | + | chr3_1:91507595-91507614 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTAAAACGG+GGG | - | chr3_1:91507880-91507899 | Msa0387540:intron | 40.0% |
| !!! | GACACTCATTTTAAAACGGG+GGG | - | chr3_1:91507881-91507900 | Msa0387540:intron | 40.0% |
| ! | TGATCAGTGCTCTAAGTCTA+AGG | - | chr3_1:91507966-91507985 | Msa0387540:intron | 40.0% |
| GTTGTAATGTGGCACAATTG+AGG | + | chr3_1:91508464-91508483 | None:intergenic | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | + | chr3_1:91508475-91508494 | None:intergenic | 40.0% | |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | - | chr3_1:91509223-91509242 | Msa0387540:intron | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | - | chr3_1:91509224-91509243 | Msa0387540:intron | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | - | chr3_1:91509304-91509323 | Msa0387540:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | - | chr3_1:91509310-91509329 | Msa0387540:intron | 40.0% |
| TCCCAATTCCTAAAAGGACT+AGG | + | chr3_1:91509315-91509334 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | + | chr3_1:91509321-91509340 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | + | chr3_1:91509481-91509500 | None:intergenic | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | + | chr3_1:91509482-91509501 | None:intergenic | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | + | chr3_1:91509588-91509607 | None:intergenic | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | - | chr3_1:91509839-91509858 | Msa0387540:intron | 40.0% | |
| GAGCCTTGATCATAATGTCA+AGG | - | chr3_1:91509884-91509903 | Msa0387540:CDS | 40.0% | |
| GCAGCTTCAATTTATGGCTG+TGG | - | chr3_1:91506669-91506688 | Msa0387540:three_prime_UTR | 45.0% | |
| !! | AGATGCCCTCACTGATTCTA+GGG | + | chr3_1:91506761-91506780 | None:intergenic | 45.0% |
| !! | AAGATGCCCTCACTGATTCT+AGG | + | chr3_1:91506762-91506781 | None:intergenic | 45.0% |
| GGTAGGTGGGAGAATTAAGA+GGG | + | chr3_1:91506837-91506856 | None:intergenic | 45.0% | |
| TGGTAGGTGGGAGAATTAAG+AGG | + | chr3_1:91506838-91506857 | None:intergenic | 45.0% | |
| !! | GCTTCCATTCCTCACTTTTC+CGG | - | chr3_1:91506868-91506887 | Msa0387540:CDS | 45.0% |
| TACTGAAGCCATTCAAGCCA+AGG | - | chr3_1:91506918-91506937 | Msa0387540:CDS | 45.0% | |
| ! | AGCAACTACCTTGGCTTGAA+TGG | + | chr3_1:91506929-91506948 | None:intergenic | 45.0% |
| ! | GGGCTTCACTTGTGTGTTTT+TGG | - | chr3_1:91507012-91507031 | Msa0387540:intron | 45.0% |
| TAATGTGGCACAATTGAGGG+TGG | + | chr3_1:91508460-91508479 | None:intergenic | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | - | chr3_1:91508471-91508490 | Msa0387540:intron | 45.0% | |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | - | chr3_1:91509225-91509244 | Msa0387540:intron | 45.0% |
| TCCCCGAAAGCAACAAAAAG+CGG | + | chr3_1:91509229-91509248 | None:intergenic | 45.0% | |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | - | chr3_1:91509232-91509251 | Msa0387540:intron | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | - | chr3_1:91509331-91509350 | Msa0387540:intron | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | + | chr3_1:91509461-91509480 | None:intergenic | 45.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | + | chr3_1:91509462-91509481 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | - | chr3_1:91509462-91509481 | Msa0387540:intron | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | - | chr3_1:91509596-91509615 | Msa0387540:intron | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | - | chr3_1:91509852-91509871 | Msa0387540:CDS | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | + | chr3_1:91509865-91509884 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTGTA+AGG | - | chr3_1:91507115-91507134 | Msa0387540:intron | 5.0% |
| !!! | ATTTTATTCTTTTTTTTTAA+TGG | + | chr3_1:91509004-91509023 | None:intergenic | 5.0% |
| CGAACCGGAAAAGTGAGGAA+TGG | + | chr3_1:91506875-91506894 | None:intergenic | 50.0% | |
| AGCAACGAACCGGAAAAGTG+AGG | + | chr3_1:91506880-91506899 | None:intergenic | 50.0% | |
| AACGACATCGAGCAACGAAC+CGG | + | chr3_1:91506890-91506909 | None:intergenic | 50.0% | |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | + | chr3_1:91509216-91509235 | None:intergenic | 50.0% |
| ATTCGCAGGCCATCTCTAGA+AGG | - | chr3_1:91509517-91509536 | Msa0387540:intron | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | - | chr3_1:91509845-91509864 | Msa0387540:CDS | 50.0% | |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | - | chr3_1:91507575-91507594 | Msa0387540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91506551 | 91510231 | 91506551 | ID=Msa0387540;Name=Msa0387540 |
| chr3_1 | mRNA | 91506551 | 91510231 | 91506551 | ID=Msa0387540-mRNA-1;Parent=Msa0387540;Name=Msa0387540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=110|1|1|1|1|1|5|218|275 |
| chr3_1 | exon | 91506551 | 91506996 | 91506551 | ID=Msa0387540-mRNA-1:exon:25531;Parent=Msa0387540-mRNA-1 |
| chr3_1 | exon | 91507165 | 91507257 | 91507165 | ID=Msa0387540-mRNA-1:exon:25530;Parent=Msa0387540-mRNA-1 |
| chr3_1 | exon | 91507485 | 91507628 | 91507485 | ID=Msa0387540-mRNA-1:exon:25529;Parent=Msa0387540-mRNA-1 |
| chr3_1 | exon | 91508290 | 91508373 | 91508290 | ID=Msa0387540-mRNA-1:exon:25528;Parent=Msa0387540-mRNA-1 |
| chr3_1 | exon | 91509843 | 91510231 | 91509843 | ID=Msa0387540-mRNA-1:exon:25527;Parent=Msa0387540-mRNA-1 |
| chr3_1 | five_prime_UTR | 91510122 | 91510231 | 91510122 | ID=Msa0387540-mRNA-1:five_prime_utr;Parent=Msa0387540-mRNA-1 |
| chr3_1 | CDS | 91509843 | 91510121 | 91509843 | ID=Msa0387540-mRNA-1:cds;Parent=Msa0387540-mRNA-1 |
| chr3_1 | CDS | 91508290 | 91508373 | 91508290 | ID=Msa0387540-mRNA-1:cds;Parent=Msa0387540-mRNA-1 |
| chr3_1 | CDS | 91507485 | 91507628 | 91507485 | ID=Msa0387540-mRNA-1:cds;Parent=Msa0387540-mRNA-1 |
| chr3_1 | CDS | 91507165 | 91507257 | 91507165 | ID=Msa0387540-mRNA-1:cds;Parent=Msa0387540-mRNA-1 |
| chr3_1 | CDS | 91506769 | 91506996 | 91506769 | ID=Msa0387540-mRNA-1:cds;Parent=Msa0387540-mRNA-1 |
| chr3_1 | three_prime_UTR | 91506551 | 91506768 | 91506551 | ID=Msa0387540-mRNA-1:three_prime_utr;Parent=Msa0387540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
