Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432040 | XP_003603296.2 | 95.255 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432040 | sp|Q9S7H4|CM2_ARATH | 57.588 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 1.00e-98 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432040 | G7J9U7 | 95.255 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0387540 | Msa0432040 | 0.912849 | 1.215649e-83 | -8.615850e-47 |
| Msa0432040 | Msa0439700 | 0.807527 | 4.838976e-50 | -8.615850e-47 |
| Msa0432040 | Msa0544930 | 0.802545 | 5.331971e-49 | -8.615850e-47 |
| Msa0432040 | Msa0589610 | 0.801065 | 1.073490e-48 | -8.615850e-47 |
| Msa0432040 | Msa0613480 | 0.801144 | 1.034206e-48 | -8.615850e-47 |
| Msa0432040 | Msa0679560 | 0.822159 | 2.750266e-53 | -8.615850e-47 |
| Msa0432040 | Msa0885320 | 0.801414 | 9.107934e-49 | -8.615850e-47 |
| Msa0432040 | Msa0886660 | 0.815412 | 9.368808e-52 | -8.615850e-47 |
| Msa0432040 | Msa0912230 | 0.844624 | 6.738144e-59 | -8.615850e-47 |
| Msa0432040 | Msa0912470 | 0.819071 | 1.407907e-52 | -8.615850e-47 |
| Msa0432040 | Msa1246040 | 0.802902 | 4.499715e-49 | -8.615850e-47 |
| Msa0432040 | Msa1374760 | 0.909721 | 4.161938e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432040 | MtrunA17_Chr1g0150241 | 65.737 | 251 | 83 | 2 | 28 | 275 | 4 | 254 | 4.81e-123 | 351 |
| Msa0432040 | MtrunA17_Chr3g0136931 | 82.979 | 141 | 21 | 1 | 2 | 139 | 1 | 141 | 2.59e-82 | 244 |
| Msa0432040 | MtrunA17_Chr6g0453931 | 47.638 | 254 | 128 | 3 | 26 | 275 | 64 | 316 | 5.00e-78 | 239 |
| Msa0432040 | MtrunA17_Chr5g0418321 | 49.393 | 247 | 120 | 4 | 33 | 275 | 73 | 318 | 2.87e-75 | 232 |
| Msa0432040 | MtrunA17_Chr3g0136921 | 97.170 | 106 | 3 | 0 | 170 | 275 | 2 | 107 | 4.56e-70 | 211 |
| Msa0432040 | MtrunA17_Chr8g0357321 | 40.260 | 77 | 36 | 2 | 200 | 275 | 4 | 71 | 9.45e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432040 | AT5G10870.1 | 57.588 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 1.02e-99 | 293 |
| Msa0432040 | AT1G69370.1 | 48.810 | 252 | 124 | 3 | 29 | 275 | 65 | 316 | 5.74e-79 | 241 |
| Msa0432040 | AT3G29200.1 | 45.290 | 276 | 139 | 3 | 11 | 275 | 66 | 340 | 3.39e-77 | 238 |
Find 56 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGCAGCTTCAATTTA+TGG | 0.102058 | 3_2:-84161233 | Msa0432040:CDS |
| TATCTTGATTGTGCACTATT+TGG | 0.178263 | 3_2:+84157682 | None:intergenic |
| CAAATTGTTTCTACTTGTTA+AGG | 0.249520 | 3_2:-84157574 | None:intergenic |
| TATACCTTGGCACGAATTAA+AGG | 0.253511 | 3_2:+84158184 | None:intergenic |
| GGTGGTAAAATTCCTTTATA+AGG | 0.277992 | 3_2:+84159430 | None:intergenic |
| GATACATGCTGTGTTAGATT+TGG | 0.284424 | 3_2:-84161276 | Msa0432040:five_prime_UTR |
| AAGATGCCCTCACTGATTCT+AGG | 0.300800 | 3_2:+84161137 | None:intergenic |
| AGCAACTACCTTGGCTTGAA+TGG | 0.341924 | 3_2:+84160970 | None:intergenic |
| ATCTCTAGAAGGATTCATTA+TGG | 0.362754 | 3_2:-84158256 | Msa0432040:CDS |
| CCTGAAGAAAATCCTTATAA+AGG | 0.368752 | 3_2:-84159442 | Msa0432040:CDS |
| ATACATGCTGTGTTAGATTT+GGG | 0.386179 | 3_2:-84161275 | Msa0432040:five_prime_UTR |
| GAAAAGAAGGCCATGGTGTT+TGG | 0.389912 | 3_2:-84157932 | Msa0432040:CDS |
| AAATTGTTTCTACTTGTTAA+GGG | 0.390134 | 3_2:-84157573 | None:intergenic |
| TCAATTAATAGTTCTACTAA+TGG | 0.393956 | 3_2:+84157758 | None:intergenic |
| AACGACATCGAGCAACGAAC+CGG | 0.410241 | 3_2:+84161009 | None:intergenic |
| TACAAGCGAGATACTATTGC+TGG | 0.411415 | 3_2:+84157860 | None:intergenic |
| TTTGTTGCTTTCGGGGATGA+TGG | 0.428043 | 3_2:-84158552 | Msa0432040:CDS |
| AGAAGAGATAGTTGTGAAGA+GGG | 0.446517 | 3_2:-84157957 | Msa0432040:CDS |
| TAGAAGAGATAGTTGTGAAG+AGG | 0.455201 | 3_2:-84157958 | Msa0432040:CDS |
| TGGTAGGTGGGAGAATTAAG+AGG | 0.466502 | 3_2:+84161061 | None:intergenic |
| ATTCGCAGGCCATCTCTAGA+AGG | 0.470601 | 3_2:-84158267 | Msa0432040:intron |
| TGTGAAGAGGGTTGAAAAGA+AGG | 0.489246 | 3_2:-84157945 | Msa0432040:CDS |
| TTAACATAAACAAGAACATA+AGG | 0.494659 | 3_2:-84158605 | Msa0432040:CDS |
| AGACACAGATCAACTGCAAA+TGG | 0.502992 | 3_2:-84161178 | Msa0432040:CDS |
| TGTTATGCTGTTAAGTTGTA+CGG | 0.509406 | 3_2:-84161203 | Msa0432040:CDS |
| GTCCCTTGACATCATGATCA+AGG | 0.517248 | 3_2:+84157897 | None:intergenic |
| GGTAGGTGGGAGAATTAAGA+GGG | 0.519339 | 3_2:+84161062 | None:intergenic |
| GCAGCTTCAATTTATGGCTG+TGG | 0.525817 | 3_2:-84161227 | Msa0432040:CDS |
| CTTGTTTATGTTAATCGAAG+CGG | 0.533853 | 3_2:+84158614 | None:intergenic |
| AATAGTATCTCGCTTGTACA+AGG | 0.537580 | 3_2:-84157855 | Msa0432040:CDS |
| TTGTAATGTGGCACAATTGA+GGG | 0.543976 | 3_2:+84159409 | None:intergenic |
| TATCTCGCTTGTACAAGGAA+TGG | 0.544751 | 3_2:-84157850 | Msa0432040:CDS |
| AGATGCCCTCACTGATTCTA+GGG | 0.546079 | 3_2:+84161138 | None:intergenic |
| GAATGGAAGCATAATGTTGA+TGG | 0.547788 | 3_2:+84161041 | None:intergenic |
| TGATGTCAAGGGACATTACA+AGG | 0.549802 | 3_2:-84157888 | Msa0432040:CDS |
| GCATAATGTTGATGGTAGGT+GGG | 0.554786 | 3_2:+84161049 | None:intergenic |
| TTATGGAAAGTTTGTAGCTG+AGG | 0.563769 | 3_2:-84158239 | Msa0432040:CDS |
| GAGCCTTGATCATGATGTCA+AGG | 0.568630 | 3_2:-84157900 | Msa0432040:CDS |
| ATAATGAATCCTTCTAGAGA+TGG | 0.570026 | 3_2:+84158258 | None:intergenic |
| AATCGTGTACAACTAAAGTC+AGG | 0.573836 | 3_2:+84157607 | None:intergenic |
| TGAGCCTTTAATTCGTGCCA+AGG | 0.575950 | 3_2:-84158188 | Msa0432040:intron |
| AGCATAATGTTGATGGTAGG+TGG | 0.585994 | 3_2:+84161048 | None:intergenic |
| TACTGAAGCCATTCAAGCCA+AGG | 0.587805 | 3_2:-84160978 | Msa0432040:intron |
| CGAACCGGAAAAGTGAGGAA+TGG | 0.610407 | 3_2:+84161024 | None:intergenic |
| GCCACATTACAACTTCTCAC+AGG | 0.612065 | 3_2:-84159398 | Msa0432040:intron |
| GGAAGCATAATGTTGATGGT+AGG | 0.616006 | 3_2:+84161045 | None:intergenic |
| AGCAACGAACCGGAAAAGTG+AGG | 0.623308 | 3_2:+84161019 | None:intergenic |
| GAGGGTTGAAAAGAAGGCCA+TGG | 0.631982 | 3_2:-84157939 | Msa0432040:CDS |
| CACTTCTTGACCAAACACCA+TGG | 0.632219 | 3_2:+84157922 | None:intergenic |
| AGCCTTGATCATGATGTCAA+GGG | 0.643010 | 3_2:-84157899 | Msa0432040:CDS |
| GTTGTAATGTGGCACAATTG+AGG | 0.646000 | 3_2:+84159408 | None:intergenic |
| ACCTGTGAGAAGTTGTAATG+TGG | 0.704606 | 3_2:+84159397 | None:intergenic |
| AATACACCCTAGAATCAGTG+AGG | 0.710690 | 3_2:-84161144 | Msa0432040:CDS |
| ATACACCCTAGAATCAGTGA+GGG | 0.715519 | 3_2:-84161143 | Msa0432040:CDS |
| TAATGTGGCACAATTGAGGG+TGG | 0.727705 | 3_2:+84159412 | None:intergenic |
| ATTAAAGGCTCATAGTCACG+AGG | 0.752224 | 3_2:+84158199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTATTAGAATTTATT+GGG | - | chr3_2:84157995-84158014 | Msa0432040:CDS | 10.0% |
| !!! | TAGTTTTAAAAGTAATAATT+TGG | + | chr3_2:84158772-84158791 | None:intergenic | 10.0% |
| !! | TTATTTAATACAGAAAATTT+AGG | + | chr3_2:84159346-84159365 | None:intergenic | 10.0% |
| !!! | ATTTTCTGTATTAAATAAAT+TGG | - | chr3_2:84159348-84159367 | Msa0432040:intron | 10.0% |
| !!! | ATTTTTCTAAAAATAATCTT+TGG | - | chr3_2:84159752-84159771 | Msa0432040:intron | 10.0% |
| !!! | GTACTTTTCAAAAAAAATTA+AGG | - | chr3_2:84157583-84157602 | Msa0432040:three_prime_UTR | 15.0% |
| !!! | GATTTTGTATTAGAATTTAT+TGG | - | chr3_2:84157994-84158013 | Msa0432040:CDS | 15.0% |
| !! | AAAAAAAAAAAAAAAACCAG+AGG | + | chr3_2:84158115-84158134 | None:intergenic | 15.0% |
| !! | AGTTATAGATGATTAAAATA+CGG | - | chr3_2:84158349-84158368 | Msa0432040:intron | 15.0% |
| !!! | GATCTAATGATATTTTAAAA+GGG | - | chr3_2:84158405-84158424 | Msa0432040:intron | 15.0% |
| !! | AAATAAAGCCAAAAATAAAT+AGG | + | chr3_2:84158498-84158517 | None:intergenic | 15.0% |
| !!! | ACATTCTTTATTTTTTTTGA+TGG | + | chr3_2:84158603-84158622 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3_2:84158796-84158815 | None:intergenic | 15.0% |
| !! | TTAAGAATCTTAAATACAAT+AGG | - | chr3_2:84158997-84159016 | Msa0432040:intron | 15.0% |
| !!! | TAAGACAATTTTGTTATATT+TGG | - | chr3_2:84159702-84159721 | Msa0432040:intron | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | + | chr3_2:84160617-84160636 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGAAAAGTACACA+TGG | + | chr3_2:84157580-84157599 | None:intergenic | 20.0% |
| !! | ATAAATAAAACAAGATGCAT+AGG | + | chr3_2:84158197-84158216 | None:intergenic | 20.0% |
| !! | ATGTTAGTGGAAAATAATAA+AGG | - | chr3_2:84158383-84158402 | Msa0432040:intron | 20.0% |
| !!! | GGATCTAATGATATTTTAAA+AGG | - | chr3_2:84158404-84158423 | Msa0432040:intron | 20.0% |
| !!! | TCTTTATTTTTTTTGATGGT+CGG | + | chr3_2:84158599-84158618 | None:intergenic | 20.0% |
| !!! | CATTTTGAAACAAATTGTTT+TGG | + | chr3_2:84158669-84158688 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3_2:84158709-84158728 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3_2:84158786-84158805 | Msa0432040:intron | 20.0% |
| !!! | TTCATTAAATTTTCATTTCG+TGG | + | chr3_2:84159141-84159160 | None:intergenic | 20.0% |
| !! | TCAAAATTGTATGAAAATCA+AGG | + | chr3_2:84159191-84159210 | None:intergenic | 20.0% |
| !! | TTCTGTATTAAATAAATTGG+TGG | - | chr3_2:84159351-84159370 | Msa0432040:intron | 20.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | - | chr3_2:84159421-84159440 | Msa0432040:CDS | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | - | chr3_2:84159571-84159590 | Msa0432040:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+CGG | - | chr3_2:84159760-84159779 | Msa0432040:intron | 20.0% |
| !! | AAATCAAAAAGAAGAAGAAA+AGG | - | chr3_2:84159838-84159857 | Msa0432040:intron | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | + | chr3_2:84159892-84159911 | None:intergenic | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | + | chr3_2:84159925-84159944 | None:intergenic | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | + | chr3_2:84159926-84159945 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | - | chr3_2:84159961-84159980 | Msa0432040:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | - | chr3_2:84159971-84159990 | Msa0432040:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | + | chr3_2:84160188-84160207 | None:intergenic | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | - | chr3_2:84160294-84160313 | Msa0432040:intron | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | - | chr3_2:84160403-84160422 | Msa0432040:intron | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | - | chr3_2:84160470-84160489 | Msa0432040:intron | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | + | chr3_2:84160546-84160565 | None:intergenic | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | - | chr3_2:84160618-84160637 | Msa0432040:intron | 20.0% |
| !!! | TTTTGGTGTAAAAATTGAAA+CGG | - | chr3_2:84160858-84160877 | Msa0432040:intron | 20.0% |
| !!! | TCAATTAATAGTTCTACTAA+TGG | + | chr3_2:84161144-84161163 | None:intergenic | 20.0% |
| ! | TCCAAAACTCTTCAATTTAT+CGG | - | chr3_2:84158060-84158079 | Msa0432040:intron | 25.0% |
| !! | CGTTTAAAACTTAAATGTGA+GGG | + | chr3_2:84158239-84158258 | None:intergenic | 25.0% |
| !!! | CCTCACATTTAAGTTTTAAA+CGG | - | chr3_2:84158237-84158256 | Msa0432040:CDS | 25.0% |
| ! | ATAGATGATTAAAATACGGT+AGG | - | chr3_2:84158353-84158372 | Msa0432040:intron | 25.0% |
| !!! | AGAGGTTACCTATTTATTTT+TGG | - | chr3_2:84158487-84158506 | Msa0432040:intron | 25.0% |
| ! | ATGCAACAATAAAGAATGTA+TGG | - | chr3_2:84158536-84158555 | Msa0432040:CDS | 25.0% |
| !!! | TTTATTTTTTTTGATGGTCG+GGG | + | chr3_2:84158597-84158616 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTTTTGATGGTC+GGG | + | chr3_2:84158598-84158617 | None:intergenic | 25.0% |
| ! | CTTTCATTAATTCGATTGTA+AGG | + | chr3_2:84158939-84158958 | None:intergenic | 25.0% |
| ! | TCGAATTAATGAAAGAGAAA+TGG | - | chr3_2:84158944-84158963 | Msa0432040:intron | 25.0% |
| !! | ATTAAGTTGTAATCATGTGA+CGG | + | chr3_2:84159264-84159283 | None:intergenic | 25.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | + | chr3_2:84159459-84159478 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | + | chr3_2:84159924-84159943 | None:intergenic | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | + | chr3_2:84160087-84160106 | None:intergenic | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | + | chr3_2:84160088-84160107 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | - | chr3_2:84160181-84160200 | Msa0432040:intron | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | - | chr3_2:84160222-84160241 | Msa0432040:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | + | chr3_2:84160229-84160248 | None:intergenic | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | + | chr3_2:84160465-84160484 | None:intergenic | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | + | chr3_2:84160466-84160485 | None:intergenic | 25.0% |
| !!! | CGTTTTTTAAATGCAAAACT+TGG | - | chr3_2:84160815-84160834 | Msa0432040:intron | 25.0% |
| !! | TTTATGTTGTTACTACGTTT+TGG | - | chr3_2:84160841-84160860 | Msa0432040:intron | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | - | chr3_2:84160865-84160884 | Msa0432040:intron | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | + | chr3_2:84161081-84161100 | None:intergenic | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | + | chr3_2:84161082-84161101 | None:intergenic | 25.0% |
| ! | TTGAAGAACGAAAAACTATA+CGG | - | chr3_2:84161256-84161275 | Msa0432040:exon | 25.0% |
| ATACATGCTGTGTTAGATTT+GGG | - | chr3_2:84157624-84157643 | Msa0432040:three_prime_UTR | 30.0% | |
| ! | TGTTATGCTGTTAAGTTGTA+CGG | - | chr3_2:84157696-84157715 | Msa0432040:three_prime_UTR | 30.0% |
| ! | ATTCCTCTCATATTTGAAAC+TGG | - | chr3_2:84157954-84157973 | Msa0432040:CDS | 30.0% |
| TTTCCAGTTTCAAATATGAG+AGG | + | chr3_2:84157960-84157979 | None:intergenic | 30.0% | |
| !!! | ATTGAAGAGTTTTGGATCAA+AGG | + | chr3_2:84158056-84158075 | None:intergenic | 30.0% |
| ! | TCCGATAAATTGAAGAGTTT+TGG | + | chr3_2:84158064-84158083 | None:intergenic | 30.0% |
| AAAAAAAGAGTAGGAAGATG+CGG | + | chr3_2:84158087-84158106 | None:intergenic | 30.0% | |
| GAGGATAAGAAAAAAAGAGT+AGG | + | chr3_2:84158096-84158115 | None:intergenic | 30.0% | |
| !!! | ACTCTTTTTTTCTTATCCTC+TGG | - | chr3_2:84158096-84158115 | Msa0432040:intron | 30.0% |
| TTAAAACTTAAATGTGAGGG+AGG | + | chr3_2:84158236-84158255 | None:intergenic | 30.0% | |
| ! | CCGTTTAAAACTTAAATGTG+AGG | + | chr3_2:84158240-84158259 | None:intergenic | 30.0% |
| ! | GGAAGACAACACAATTTTTA+AGG | + | chr3_2:84158460-84158479 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | + | chr3_2:84158743-84158762 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | + | chr3_2:84158747-84158766 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr3_2:84158877-84158896 | None:intergenic | 30.0% |
| GATTGTAAGGACTAAATTGT+TGG | + | chr3_2:84158926-84158945 | None:intergenic | 30.0% | |
| ! | CATTTCAATTTTCACTGCAT+TGG | + | chr3_2:84159054-84159073 | None:intergenic | 30.0% |
| ! | CCTTTATAAGGATTTTCTTC+AGG | + | chr3_2:84159460-84159479 | None:intergenic | 30.0% |
| CCTGAAGAAAATCCTTATAA+AGG | - | chr3_2:84159457-84159476 | Msa0432040:CDS | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | + | chr3_2:84159472-84159491 | None:intergenic | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | - | chr3_2:84159540-84159559 | Msa0432040:intron | 30.0% | |
| !! | TCTAGGGCTATTTTATTTGA+TGG | - | chr3_2:84159556-84159575 | Msa0432040:intron | 30.0% |
| AAAGGAAGATATTGGAGAAA+AGG | - | chr3_2:84159979-84159998 | Msa0432040:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | - | chr3_2:84159980-84159999 | Msa0432040:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | + | chr3_2:84160041-84160060 | None:intergenic | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | - | chr3_2:84160039-84160058 | Msa0432040:intron | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | + | chr3_2:84160082-84160101 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | + | chr3_2:84160288-84160307 | None:intergenic | 30.0% | |
| ! | TAGTGATCTTTCAATTTTGC+AGG | - | chr3_2:84160391-84160410 | Msa0432040:intron | 30.0% |
| AAGATAAAGATGGATATCGT+AGG | - | chr3_2:84160480-84160499 | Msa0432040:intron | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | + | chr3_2:84160644-84160663 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | - | chr3_2:84160643-84160662 | Msa0432040:intron | 30.0% |
| TATCTTGATTGTGCACTATT+TGG | + | chr3_2:84161220-84161239 | None:intergenic | 30.0% | |
| GATACATGCTGTGTTAGATT+TGG | - | chr3_2:84157623-84157642 | Msa0432040:three_prime_UTR | 35.0% | |
| GATGAAGCAGCTTCAATTTA+TGG | - | chr3_2:84157666-84157685 | Msa0432040:three_prime_UTR | 35.0% | |
| ! | GAATGGAAGCATAATGTTGA+TGG | + | chr3_2:84157861-84157880 | None:intergenic | 35.0% |
| TTGTAAGGTTGAACAACATG+AGG | - | chr3_2:84158135-84158154 | Msa0432040:intron | 35.0% | |
| AATAGGTAACCTCTTACATG+TGG | + | chr3_2:84158481-84158500 | None:intergenic | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | - | chr3_2:84158558-84158577 | Msa0432040:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | chr3_2:84158563-84158582 | Msa0432040:CDS | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | chr3_2:84158564-84158583 | Msa0432040:CDS | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | chr3_2:84158565-84158584 | Msa0432040:CDS | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3_2:84158643-84158662 | None:intergenic | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | + | chr3_2:84158744-84158763 | None:intergenic | 35.0% |
| !!! | AACGACACTCATTTTGAAAC+AGG | - | chr3_2:84158879-84158898 | Msa0432040:intron | 35.0% |
| TTGTAATGTGGCACAATTGA+GGG | + | chr3_2:84159493-84159512 | None:intergenic | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | + | chr3_2:84159542-84159561 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | - | chr3_2:84159539-84159558 | Msa0432040:intron | 35.0% | |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | - | chr3_2:84160426-84160445 | Msa0432040:intron | 35.0% |
| TTATGGAAAGTTTGTAGCTG+AGG | - | chr3_2:84160660-84160679 | Msa0432040:intron | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | + | chr3_2:84160718-84160737 | None:intergenic | 35.0% | |
| AACAAGATCACTGTATACCT+TGG | + | chr3_2:84160731-84160750 | None:intergenic | 35.0% | |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | - | chr3_2:84160879-84160898 | Msa0432040:intron | 35.0% |
| TAGAAGAGATAGTTGTGAAG+AGG | - | chr3_2:84160941-84160960 | Msa0432040:intron | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | - | chr3_2:84160942-84160961 | Msa0432040:intron | 35.0% | |
| AATAGTATCTCGCTTGTACA+AGG | - | chr3_2:84161044-84161063 | Msa0432040:CDS | 35.0% | |
| AATCGTGTACAACTAAAGTC+AGG | + | chr3_2:84161295-84161314 | None:intergenic | 35.0% | |
| AGACACAGATCAACTGCAAA+TGG | - | chr3_2:84157721-84157740 | Msa0432040:three_prime_UTR | 40.0% | |
| AATACACCCTAGAATCAGTG+AGG | - | chr3_2:84157755-84157774 | Msa0432040:three_prime_UTR | 40.0% | |
| ATACACCCTAGAATCAGTGA+GGG | - | chr3_2:84157756-84157775 | Msa0432040:three_prime_UTR | 40.0% | |
| !! | GCATAATGTTGATGGTAGGT+GGG | + | chr3_2:84157853-84157872 | None:intergenic | 40.0% |
| !! | AGCATAATGTTGATGGTAGG+TGG | + | chr3_2:84157854-84157873 | None:intergenic | 40.0% |
| !! | GGAAGCATAATGTTGATGGT+AGG | + | chr3_2:84157857-84157876 | None:intergenic | 40.0% |
| GAGGAATTAAGCAACTACCT+TGG | + | chr3_2:84157941-84157960 | None:intergenic | 40.0% | |
| !! | GGGCTTCACTTGTTTGTTTT+TGG | - | chr3_2:84158015-84158034 | Msa0432040:intron | 40.0% |
| ! | GGTAGGTAAGAGTATGTTAG+TGG | - | chr3_2:84158370-84158389 | Msa0432040:intron | 40.0% |
| TGTTGTCTTCCACATGTAAG+AGG | - | chr3_2:84158469-84158488 | Msa0432040:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACAGG+AGG | - | chr3_2:84158882-84158901 | Msa0432040:intron | 40.0% |
| ! | TGATCAGTGCTCTAAGTCTA+AGG | - | chr3_2:84158967-84158986 | Msa0432040:intron | 40.0% |
| GTTGTAATGTGGCACAATTG+AGG | + | chr3_2:84159494-84159513 | None:intergenic | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | + | chr3_2:84159505-84159524 | None:intergenic | 40.0% | |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | - | chr3_2:84160338-84160357 | Msa0432040:intron | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | - | chr3_2:84160339-84160358 | Msa0432040:intron | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | - | chr3_2:84160419-84160438 | Msa0432040:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | - | chr3_2:84160425-84160444 | Msa0432040:intron | 40.0% |
| TCCCAATTCCTAAAAGGACT+AGG | + | chr3_2:84160430-84160449 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | + | chr3_2:84160436-84160455 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | + | chr3_2:84160596-84160615 | None:intergenic | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | + | chr3_2:84160597-84160616 | None:intergenic | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | + | chr3_2:84160703-84160722 | None:intergenic | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | - | chr3_2:84160954-84160973 | Msa0432040:intron | 40.0% | |
| AGCCTTGATCATGATGTCAA+GGG | - | chr3_2:84161000-84161019 | Msa0432040:CDS | 40.0% | |
| TGATGTCAAGGGACATTACA+AGG | - | chr3_2:84161011-84161030 | Msa0432040:CDS | 40.0% | |
| TACAAGCGAGATACTATTGC+TGG | + | chr3_2:84161042-84161061 | None:intergenic | 40.0% | |
| TATCTCGCTTGTACAAGGAA+TGG | - | chr3_2:84161049-84161068 | Msa0432040:CDS | 40.0% | |
| GCAGCTTCAATTTATGGCTG+TGG | - | chr3_2:84157672-84157691 | Msa0432040:three_prime_UTR | 45.0% | |
| !! | AGATGCCCTCACTGATTCTA+GGG | + | chr3_2:84157764-84157783 | None:intergenic | 45.0% |
| !! | AAGATGCCCTCACTGATTCT+AGG | + | chr3_2:84157765-84157784 | None:intergenic | 45.0% |
| GGTAGGTGGGAGAATTAAGA+GGG | + | chr3_2:84157840-84157859 | None:intergenic | 45.0% | |
| TGGTAGGTGGGAGAATTAAG+AGG | + | chr3_2:84157841-84157860 | None:intergenic | 45.0% | |
| !! | GCTTCCATTCCTCACTTTTC+CGG | - | chr3_2:84157871-84157890 | Msa0432040:CDS | 45.0% |
| TACTGAAGCCATTCAAGCCA+AGG | - | chr3_2:84157921-84157940 | Msa0432040:CDS | 45.0% | |
| ! | AGCAACTACCTTGGCTTGAA+TGG | + | chr3_2:84157932-84157951 | None:intergenic | 45.0% |
| TAATGTGGCACAATTGAGGG+TGG | + | chr3_2:84159490-84159509 | None:intergenic | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | - | chr3_2:84159501-84159520 | Msa0432040:intron | 45.0% | |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | - | chr3_2:84160340-84160359 | Msa0432040:intron | 45.0% |
| TCCCCGAAAGCAACAAAAAG+CGG | + | chr3_2:84160344-84160363 | None:intergenic | 45.0% | |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | - | chr3_2:84160347-84160366 | Msa0432040:intron | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | - | chr3_2:84160446-84160465 | Msa0432040:intron | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | + | chr3_2:84160576-84160595 | None:intergenic | 45.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | + | chr3_2:84160577-84160596 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | - | chr3_2:84160577-84160596 | Msa0432040:intron | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | - | chr3_2:84160711-84160730 | Msa0432040:intron | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | - | chr3_2:84160967-84160986 | Msa0432040:intron | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | + | chr3_2:84160980-84160999 | None:intergenic | 45.0% | |
| GAGCCTTGATCATGATGTCA+AGG | - | chr3_2:84160999-84161018 | Msa0432040:CDS | 45.0% | |
| GTCCCTTGACATCATGATCA+AGG | + | chr3_2:84161005-84161024 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTGTA+AGG | - | chr3_2:84158120-84158139 | Msa0432040:intron | 5.0% |
| !!! | TTTTGATTTTTTTTTTTTTA+CGG | + | chr3_2:84159827-84159846 | None:intergenic | 5.0% |
| !!! | AATTTTATTCTTTTTTTTAA+TGG | + | chr3_2:84160121-84160140 | None:intergenic | 5.0% |
| CGAACCGGAAAAGTGAGGAA+TGG | + | chr3_2:84157878-84157897 | None:intergenic | 50.0% | |
| AGCAACGAACCGGAAAAGTG+AGG | + | chr3_2:84157883-84157902 | None:intergenic | 50.0% | |
| AACGACATCGAGCAACGAAC+CGG | + | chr3_2:84157893-84157912 | None:intergenic | 50.0% | |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | + | chr3_2:84160331-84160350 | None:intergenic | 50.0% |
| ATTCGCAGGCCATCTCTAGA+AGG | - | chr3_2:84160632-84160651 | Msa0432040:intron | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | - | chr3_2:84160960-84160979 | Msa0432040:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84157575 | 84161346 | 84157575 | ID=Msa0432040;Name=Msa0432040 |
| chr3_2 | mRNA | 84157575 | 84161346 | 84157575 | ID=Msa0432040-mRNA-1;Parent=Msa0432040;Name=Msa0432040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|5|218|275 |
| chr3_2 | exon | 84157575 | 84158020 | 84157575 | ID=Msa0432040-mRNA-1:exon:23739;Parent=Msa0432040-mRNA-1 |
| chr3_2 | exon | 84158189 | 84158281 | 84158189 | ID=Msa0432040-mRNA-1:exon:23738;Parent=Msa0432040-mRNA-1 |
| chr3_2 | exon | 84158509 | 84158652 | 84158509 | ID=Msa0432040-mRNA-1:exon:23737;Parent=Msa0432040-mRNA-1 |
| chr3_2 | exon | 84159399 | 84159482 | 84159399 | ID=Msa0432040-mRNA-1:exon:23736;Parent=Msa0432040-mRNA-1 |
| chr3_2 | exon | 84160979 | 84161346 | 84160979 | ID=Msa0432040-mRNA-1:exon:23735;Parent=Msa0432040-mRNA-1 |
| chr3_2 | five_prime_UTR | 84161258 | 84161346 | 84161258 | ID=Msa0432040-mRNA-1:five_prime_utr;Parent=Msa0432040-mRNA-1 |
| chr3_2 | CDS | 84160979 | 84161257 | 84160979 | ID=Msa0432040-mRNA-1:cds;Parent=Msa0432040-mRNA-1 |
| chr3_2 | CDS | 84159399 | 84159482 | 84159399 | ID=Msa0432040-mRNA-1:cds;Parent=Msa0432040-mRNA-1 |
| chr3_2 | CDS | 84158509 | 84158652 | 84158509 | ID=Msa0432040-mRNA-1:cds;Parent=Msa0432040-mRNA-1 |
| chr3_2 | CDS | 84158189 | 84158281 | 84158189 | ID=Msa0432040-mRNA-1:cds;Parent=Msa0432040-mRNA-1 |
| chr3_2 | CDS | 84157793 | 84158020 | 84157793 | ID=Msa0432040-mRNA-1:cds;Parent=Msa0432040-mRNA-1 |
| chr3_2 | three_prime_UTR | 84157575 | 84157792 | 84157575 | ID=Msa0432040-mRNA-1:three_prime_utr;Parent=Msa0432040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
