Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374760 | XP_003603296.2 | 91.111 | 180 | 6 | 1 | 3 | 172 | 95 | 274 | 8.09e-114 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374760 | sp|Q9S7H4|CM2_ARATH | 56.757 | 185 | 65 | 3 | 3 | 172 | 81 | 265 | 6.91e-63 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374760 | G7J9U7 | 91.111 | 180 | 6 | 1 | 3 | 172 | 95 | 274 | 3.86e-114 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616560 | Msa1374760 | -0.808754 | 2.650816e-50 | -8.615850e-47 |
| Msa0715720 | Msa1374760 | 0.800710 | 1.268496e-48 | -8.615850e-47 |
| Msa0723140 | Msa1374760 | 0.808277 | 3.352521e-50 | -8.615850e-47 |
| Msa0226620 | Msa1374760 | -0.802519 | 5.398731e-49 | -8.615850e-47 |
| Msa1246040 | Msa1374760 | 0.803110 | 4.075984e-49 | -8.615850e-47 |
| Msa0387540 | Msa1374760 | 0.801417 | 9.093243e-49 | -8.615850e-47 |
| Msa0432040 | Msa1374760 | 0.909721 | 4.161938e-82 | -8.615850e-47 |
| Msa0996830 | Msa1374760 | -0.809944 | 1.473081e-50 | -8.615850e-47 |
| Msa0260270 | Msa1374760 | -0.812045 | 5.165293e-51 | -8.615850e-47 |
| Msa1139240 | Msa1374760 | 0.800316 | 1.525911e-48 | -8.615850e-47 |
| Msa0564510 | Msa1374760 | 0.807296 | 5.417254e-50 | -8.615850e-47 |
| Msa0843280 | Msa1374760 | 0.805095 | 1.575172e-49 | -8.615850e-47 |
| Msa0886660 | Msa1374760 | 0.808117 | 3.625033e-50 | -8.615850e-47 |
| Msa0912230 | Msa1374760 | 0.803611 | 3.209002e-49 | -8.615850e-47 |
| Msa0912470 | Msa1374760 | 0.800977 | 1.119036e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374760 | MtrunA17_Chr1g0150241 | 63.934 | 183 | 53 | 3 | 3 | 172 | 72 | 254 | 1.67e-78 | 234 |
| Msa1374760 | MtrunA17_Chr3g0136921 | 95.876 | 97 | 4 | 0 | 76 | 172 | 11 | 107 | 6.62e-63 | 189 |
| Msa1374760 | MtrunA17_Chr5g0418321 | 46.739 | 184 | 84 | 4 | 3 | 172 | 135 | 318 | 1.22e-45 | 152 |
| Msa1374760 | MtrunA17_Chr6g0453931 | 43.478 | 184 | 90 | 3 | 3 | 172 | 133 | 316 | 2.50e-45 | 151 |
| Msa1374760 | MtrunA17_Chr3g0136931 | 63.830 | 47 | 14 | 1 | 3 | 46 | 95 | 141 | 4.89e-14 | 65.9 |
| Msa1374760 | MtrunA17_Chr8g0357321 | 40.260 | 77 | 36 | 2 | 97 | 172 | 4 | 71 | 4.18e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374760 | AT5G10870.1 | 56.757 | 185 | 65 | 3 | 3 | 172 | 81 | 265 | 7.02e-64 | 197 |
| Msa1374760 | AT1G69370.1 | 46.739 | 184 | 84 | 3 | 3 | 172 | 133 | 316 | 2.50e-49 | 162 |
| Msa1374760 | AT3G29200.1 | 43.979 | 191 | 86 | 4 | 3 | 172 | 150 | 340 | 4.03e-45 | 151 |
Find 32 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTTGATTGTGCACTATT+TGG | 0.178263 | tig0019570:-103265 | None:intergenic |
| CAAATTGTTTCTACTTGTTA+AGG | 0.249520 | tig0019570:+103373 | Msa1374760:three_prime_UTR |
| TATACCTTGGCACGAATTAA+AGG | 0.253511 | tig0019570:-102763 | None:intergenic |
| GGTGGTAAAATTCCTTTATA+AGG | 0.277992 | tig0019570:-101515 | None:intergenic |
| CCTGAAGAAAATCCTTATAA+AGG | 0.368752 | tig0019570:+101503 | Msa1374760:CDS |
| GAAAAGAAGGCCATGGTGTT+TGG | 0.389912 | tig0019570:+103015 | Msa1374760:CDS |
| AAATTGTTTCTACTTGTTAA+GGG | 0.390134 | tig0019570:+103374 | Msa1374760:three_prime_UTR |
| TCAATTAATAGTTCTACTAA+TGG | 0.393956 | tig0019570:-103189 | None:intergenic |
| TACAAGCGAGATACTATTGC+TGG | 0.411415 | tig0019570:-103087 | None:intergenic |
| TTTGTTGCTTTCGGGGATGA+TGG | 0.428043 | tig0019570:+102395 | Msa1374760:CDS |
| AGAAGAGATAGTTGTGAAGA+GGG | 0.446517 | tig0019570:+102990 | Msa1374760:CDS |
| TAGAAGAGATAGTTGTGAAG+AGG | 0.455201 | tig0019570:+102989 | Msa1374760:CDS |
| TGTGAAGAGGGTTGAAAAGA+AGG | 0.489246 | tig0019570:+103002 | Msa1374760:CDS |
| TTAACATAAACAAGAACATA+AGG | 0.494659 | tig0019570:+102342 | Msa1374760:CDS |
| GTCCCTTGACATCATGATCA+AGG | 0.517248 | tig0019570:-103050 | None:intergenic |
| CTTGTTTATGTTAATCGAAG+CGG | 0.533853 | tig0019570:-102333 | None:intergenic |
| AATAGTATCTCGCTTGTACA+AGG | 0.537580 | tig0019570:+103092 | Msa1374760:CDS |
| TTGTAATGTGGCACAATTGA+GGG | 0.543976 | tig0019570:-101536 | None:intergenic |
| TATCTCGCTTGTACAAGGAA+TGG | 0.544751 | tig0019570:+103097 | Msa1374760:CDS |
| TGATGTCAAGGGACATTACA+AGG | 0.549802 | tig0019570:+103059 | Msa1374760:CDS |
| TTATGGAAAGTTTGTAGCTG+AGG | 0.563769 | tig0019570:+102708 | Msa1374760:intron |
| GAGCCTTGATCATGATGTCA+AGG | 0.568630 | tig0019570:+103047 | Msa1374760:CDS |
| AATCGTGTACAACTAAAGTC+AGG | 0.573836 | tig0019570:-103340 | None:intergenic |
| TGAGCCTTTAATTCGTGCCA+AGG | 0.575950 | tig0019570:+102759 | Msa1374760:CDS |
| GCCACATTACAACTTCTCAC+AGG | 0.612065 | tig0019570:+101547 | Msa1374760:CDS |
| GAGGGTTGAAAAGAAGGCCA+TGG | 0.631982 | tig0019570:+103008 | Msa1374760:CDS |
| CACTTCTTGACCAAACACCA+TGG | 0.632219 | tig0019570:-103025 | None:intergenic |
| AGCCTTGATCATGATGTCAA+GGG | 0.643010 | tig0019570:+103048 | Msa1374760:CDS |
| GTTGTAATGTGGCACAATTG+AGG | 0.646000 | tig0019570:-101537 | None:intergenic |
| ACCTGTGAGAAGTTGTAATG+TGG | 0.704606 | tig0019570:-101548 | None:intergenic |
| TAATGTGGCACAATTGAGGG+TGG | 0.727705 | tig0019570:-101533 | None:intergenic |
| ATTAAAGGCTCATAGTCACG+AGG | 0.752224 | tig0019570:-102748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCTAAAAATAATCTT+TGG | + | tig0019570:101799-101818 | Msa1374760:intron | 10.0% |
| !!! | ATTTTTCTAAAAATAATCTT+TGG | + | tig0019570:101799-101818 | Msa1374760:intron | 10.0% |
| !!! | TAAGACAATTTTGTTATATT+TGG | + | tig0019570:101749-101768 | Msa1374760:intron | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | - | tig0019570:102665-102684 | None:intergenic | 15.0% |
| !!! | TAAGACAATTTTGTTATATT+TGG | + | tig0019570:101749-101768 | Msa1374760:intron | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | - | tig0019570:102665-102684 | None:intergenic | 15.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | + | tig0019570:101467-101486 | Msa1374760:intron | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | + | tig0019570:101617-101636 | Msa1374760:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+CGG | + | tig0019570:101807-101826 | Msa1374760:intron | 20.0% |
| !! | AAATCAAAAAGAAGAAGAAA+AGG | + | tig0019570:101886-101905 | Msa1374760:intron | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | - | tig0019570:101940-101959 | None:intergenic | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | - | tig0019570:101973-101992 | None:intergenic | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | - | tig0019570:101974-101993 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | + | tig0019570:102009-102028 | Msa1374760:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | + | tig0019570:102019-102038 | Msa1374760:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | - | tig0019570:102236-102255 | None:intergenic | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | + | tig0019570:102342-102361 | Msa1374760:CDS | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | + | tig0019570:102451-102470 | Msa1374760:intron | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | + | tig0019570:102518-102537 | Msa1374760:intron | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | - | tig0019570:102594-102613 | None:intergenic | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | + | tig0019570:102666-102685 | Msa1374760:intron | 20.0% |
| !!! | TTTTGGTGTAAAAATTGAAA+CGG | + | tig0019570:102906-102925 | Msa1374760:intron | 20.0% |
| !!! | TCAATTAATAGTTCTACTAA+TGG | - | tig0019570:103192-103211 | None:intergenic | 20.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | + | tig0019570:101467-101486 | Msa1374760:intron | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | + | tig0019570:101617-101636 | Msa1374760:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+CGG | + | tig0019570:101807-101826 | Msa1374760:intron | 20.0% |
| !! | AAATCAAAAAGAAGAAGAAA+AGG | + | tig0019570:101886-101905 | Msa1374760:intron | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | - | tig0019570:101940-101959 | None:intergenic | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | - | tig0019570:101973-101992 | None:intergenic | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | - | tig0019570:101974-101993 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | + | tig0019570:102009-102028 | Msa1374760:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | + | tig0019570:102019-102038 | Msa1374760:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | - | tig0019570:102236-102255 | None:intergenic | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | + | tig0019570:102342-102361 | Msa1374760:CDS | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | + | tig0019570:102451-102470 | Msa1374760:intron | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | + | tig0019570:102518-102537 | Msa1374760:intron | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | - | tig0019570:102594-102613 | None:intergenic | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | + | tig0019570:102666-102685 | Msa1374760:intron | 20.0% |
| !!! | TTTTGGTGTAAAAATTGAAA+CGG | + | tig0019570:102906-102925 | Msa1374760:intron | 20.0% |
| !!! | TCAATTAATAGTTCTACTAA+TGG | - | tig0019570:103192-103211 | None:intergenic | 20.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | - | tig0019570:101505-101524 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | - | tig0019570:101972-101991 | None:intergenic | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | - | tig0019570:102135-102154 | None:intergenic | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | - | tig0019570:102136-102155 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | + | tig0019570:102229-102248 | Msa1374760:intron | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | + | tig0019570:102270-102289 | Msa1374760:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | - | tig0019570:102277-102296 | None:intergenic | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | - | tig0019570:102513-102532 | None:intergenic | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | - | tig0019570:102514-102533 | None:intergenic | 25.0% |
| !!! | CGTTTTTTAAATGCAAAACT+TGG | + | tig0019570:102863-102882 | Msa1374760:intron | 25.0% |
| !! | TTTATGTTGTTACTACGTTT+TGG | + | tig0019570:102889-102908 | Msa1374760:intron | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | + | tig0019570:102913-102932 | Msa1374760:intron | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | - | tig0019570:103129-103148 | None:intergenic | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | - | tig0019570:103130-103149 | None:intergenic | 25.0% |
| ! | TTGAAGAACGAAAAACTATA+CGG | + | tig0019570:103304-103323 | Msa1374760:three_prime_UTR | 25.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | - | tig0019570:101505-101524 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | - | tig0019570:101972-101991 | None:intergenic | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | - | tig0019570:102135-102154 | None:intergenic | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | - | tig0019570:102136-102155 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | + | tig0019570:102229-102248 | Msa1374760:intron | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | + | tig0019570:102270-102289 | Msa1374760:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | - | tig0019570:102277-102296 | None:intergenic | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | - | tig0019570:102513-102532 | None:intergenic | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | - | tig0019570:102514-102533 | None:intergenic | 25.0% |
| !!! | CGTTTTTTAAATGCAAAACT+TGG | + | tig0019570:102863-102882 | Msa1374760:intron | 25.0% |
| !! | TTTATGTTGTTACTACGTTT+TGG | + | tig0019570:102889-102908 | Msa1374760:intron | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | + | tig0019570:102913-102932 | Msa1374760:intron | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | - | tig0019570:103129-103148 | None:intergenic | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | - | tig0019570:103130-103149 | None:intergenic | 25.0% |
| ! | TTGAAGAACGAAAAACTATA+CGG | + | tig0019570:103304-103323 | Msa1374760:three_prime_UTR | 25.0% |
| ! | CCTTTATAAGGATTTTCTTC+AGG | - | tig0019570:101506-101525 | None:intergenic | 30.0% |
| CCTGAAGAAAATCCTTATAA+AGG | + | tig0019570:101503-101522 | Msa1374760:CDS | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | - | tig0019570:101518-101537 | None:intergenic | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | + | tig0019570:101586-101605 | Msa1374760:intron | 30.0% | |
| !! | TCTAGGGCTATTTTATTTGA+TGG | + | tig0019570:101602-101621 | Msa1374760:intron | 30.0% |
| AAAGGAAGATATTGGAGAAA+AGG | + | tig0019570:102027-102046 | Msa1374760:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | + | tig0019570:102028-102047 | Msa1374760:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | - | tig0019570:102089-102108 | None:intergenic | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | + | tig0019570:102087-102106 | Msa1374760:intron | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | - | tig0019570:102130-102149 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | - | tig0019570:102336-102355 | None:intergenic | 30.0% | |
| ! | TAGTGATCTTTCAATTTTGC+AGG | + | tig0019570:102439-102458 | Msa1374760:CDS | 30.0% |
| AAGATAAAGATGGATATCGT+AGG | + | tig0019570:102528-102547 | Msa1374760:intron | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | - | tig0019570:102692-102711 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | + | tig0019570:102691-102710 | Msa1374760:intron | 30.0% |
| TATCTTGATTGTGCACTATT+TGG | - | tig0019570:103268-103287 | None:intergenic | 30.0% | |
| ! | CCTTTATAAGGATTTTCTTC+AGG | - | tig0019570:101506-101525 | None:intergenic | 30.0% |
| CCTGAAGAAAATCCTTATAA+AGG | + | tig0019570:101503-101522 | Msa1374760:CDS | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | - | tig0019570:101518-101537 | None:intergenic | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | + | tig0019570:101586-101605 | Msa1374760:intron | 30.0% | |
| !! | TCTAGGGCTATTTTATTTGA+TGG | + | tig0019570:101602-101621 | Msa1374760:intron | 30.0% |
| AAAGGAAGATATTGGAGAAA+AGG | + | tig0019570:102027-102046 | Msa1374760:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | + | tig0019570:102028-102047 | Msa1374760:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | - | tig0019570:102089-102108 | None:intergenic | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | + | tig0019570:102087-102106 | Msa1374760:intron | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | - | tig0019570:102130-102149 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | - | tig0019570:102336-102355 | None:intergenic | 30.0% | |
| ! | TAGTGATCTTTCAATTTTGC+AGG | + | tig0019570:102439-102458 | Msa1374760:CDS | 30.0% |
| AAGATAAAGATGGATATCGT+AGG | + | tig0019570:102528-102547 | Msa1374760:intron | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | - | tig0019570:102692-102711 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | + | tig0019570:102691-102710 | Msa1374760:intron | 30.0% |
| TATCTTGATTGTGCACTATT+TGG | - | tig0019570:103268-103287 | None:intergenic | 30.0% | |
| TTGTAATGTGGCACAATTGA+GGG | - | tig0019570:101539-101558 | None:intergenic | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | - | tig0019570:101588-101607 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | + | tig0019570:101585-101604 | Msa1374760:intron | 35.0% | |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | + | tig0019570:102474-102493 | Msa1374760:intron | 35.0% |
| TTATGGAAAGTTTGTAGCTG+AGG | + | tig0019570:102708-102727 | Msa1374760:intron | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | - | tig0019570:102766-102785 | None:intergenic | 35.0% | |
| AACAAGATCACTGTATACCT+TGG | - | tig0019570:102779-102798 | None:intergenic | 35.0% | |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | + | tig0019570:102927-102946 | Msa1374760:intron | 35.0% |
| TAGAAGAGATAGTTGTGAAG+AGG | + | tig0019570:102989-103008 | Msa1374760:CDS | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | + | tig0019570:102990-103009 | Msa1374760:CDS | 35.0% | |
| AATAGTATCTCGCTTGTACA+AGG | + | tig0019570:103092-103111 | Msa1374760:CDS | 35.0% | |
| AATCGTGTACAACTAAAGTC+AGG | - | tig0019570:103343-103362 | None:intergenic | 35.0% | |
| TTGTAATGTGGCACAATTGA+GGG | - | tig0019570:101539-101558 | None:intergenic | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | - | tig0019570:101588-101607 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | + | tig0019570:101585-101604 | Msa1374760:intron | 35.0% | |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | + | tig0019570:102474-102493 | Msa1374760:intron | 35.0% |
| TTATGGAAAGTTTGTAGCTG+AGG | + | tig0019570:102708-102727 | Msa1374760:intron | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | - | tig0019570:102766-102785 | None:intergenic | 35.0% | |
| AACAAGATCACTGTATACCT+TGG | - | tig0019570:102779-102798 | None:intergenic | 35.0% | |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | + | tig0019570:102927-102946 | Msa1374760:intron | 35.0% |
| TAGAAGAGATAGTTGTGAAG+AGG | + | tig0019570:102989-103008 | Msa1374760:CDS | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | + | tig0019570:102990-103009 | Msa1374760:CDS | 35.0% | |
| AATAGTATCTCGCTTGTACA+AGG | + | tig0019570:103092-103111 | Msa1374760:CDS | 35.0% | |
| AATCGTGTACAACTAAAGTC+AGG | - | tig0019570:103343-103362 | None:intergenic | 35.0% | |
| GTTGTAATGTGGCACAATTG+AGG | - | tig0019570:101540-101559 | None:intergenic | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | - | tig0019570:101551-101570 | None:intergenic | 40.0% | |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | + | tig0019570:102386-102405 | Msa1374760:CDS | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | + | tig0019570:102387-102406 | Msa1374760:CDS | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | + | tig0019570:102467-102486 | Msa1374760:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | + | tig0019570:102473-102492 | Msa1374760:intron | 40.0% |
| TCCCAATTCCTAAAAGGACT+AGG | - | tig0019570:102478-102497 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | - | tig0019570:102484-102503 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | - | tig0019570:102644-102663 | None:intergenic | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | - | tig0019570:102645-102664 | None:intergenic | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | - | tig0019570:102751-102770 | None:intergenic | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | + | tig0019570:103002-103021 | Msa1374760:CDS | 40.0% | |
| AGCCTTGATCATGATGTCAA+GGG | + | tig0019570:103048-103067 | Msa1374760:CDS | 40.0% | |
| TGATGTCAAGGGACATTACA+AGG | + | tig0019570:103059-103078 | Msa1374760:CDS | 40.0% | |
| TACAAGCGAGATACTATTGC+TGG | - | tig0019570:103090-103109 | None:intergenic | 40.0% | |
| TATCTCGCTTGTACAAGGAA+TGG | + | tig0019570:103097-103116 | Msa1374760:CDS | 40.0% | |
| GTTGTAATGTGGCACAATTG+AGG | - | tig0019570:101540-101559 | None:intergenic | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | - | tig0019570:101551-101570 | None:intergenic | 40.0% | |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | + | tig0019570:102386-102405 | Msa1374760:CDS | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | + | tig0019570:102387-102406 | Msa1374760:CDS | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | + | tig0019570:102467-102486 | Msa1374760:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | + | tig0019570:102473-102492 | Msa1374760:intron | 40.0% |
| TCCCAATTCCTAAAAGGACT+AGG | - | tig0019570:102478-102497 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | - | tig0019570:102484-102503 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | - | tig0019570:102644-102663 | None:intergenic | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | - | tig0019570:102645-102664 | None:intergenic | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | - | tig0019570:102751-102770 | None:intergenic | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | + | tig0019570:103002-103021 | Msa1374760:CDS | 40.0% | |
| AGCCTTGATCATGATGTCAA+GGG | + | tig0019570:103048-103067 | Msa1374760:CDS | 40.0% | |
| TGATGTCAAGGGACATTACA+AGG | + | tig0019570:103059-103078 | Msa1374760:CDS | 40.0% | |
| TACAAGCGAGATACTATTGC+TGG | - | tig0019570:103090-103109 | None:intergenic | 40.0% | |
| TATCTCGCTTGTACAAGGAA+TGG | + | tig0019570:103097-103116 | Msa1374760:CDS | 40.0% | |
| TAATGTGGCACAATTGAGGG+TGG | - | tig0019570:101536-101555 | None:intergenic | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | + | tig0019570:101547-101566 | Msa1374760:CDS | 45.0% | |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | + | tig0019570:102388-102407 | Msa1374760:CDS | 45.0% |
| TCCCCGAAAGCAACAAAAAG+CGG | - | tig0019570:102392-102411 | None:intergenic | 45.0% | |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | + | tig0019570:102395-102414 | Msa1374760:CDS | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | + | tig0019570:102494-102513 | Msa1374760:intron | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | - | tig0019570:102624-102643 | None:intergenic | 45.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | - | tig0019570:102625-102644 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | + | tig0019570:102625-102644 | Msa1374760:intron | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | + | tig0019570:102759-102778 | Msa1374760:CDS | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | + | tig0019570:103015-103034 | Msa1374760:CDS | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | - | tig0019570:103028-103047 | None:intergenic | 45.0% | |
| GAGCCTTGATCATGATGTCA+AGG | + | tig0019570:103047-103066 | Msa1374760:CDS | 45.0% | |
| GTCCCTTGACATCATGATCA+AGG | - | tig0019570:103053-103072 | None:intergenic | 45.0% | |
| TAATGTGGCACAATTGAGGG+TGG | - | tig0019570:101536-101555 | None:intergenic | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | + | tig0019570:101547-101566 | Msa1374760:CDS | 45.0% | |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | + | tig0019570:102388-102407 | Msa1374760:CDS | 45.0% |
| TCCCCGAAAGCAACAAAAAG+CGG | - | tig0019570:102392-102411 | None:intergenic | 45.0% | |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | + | tig0019570:102395-102414 | Msa1374760:CDS | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | + | tig0019570:102494-102513 | Msa1374760:intron | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | - | tig0019570:102624-102643 | None:intergenic | 45.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | - | tig0019570:102625-102644 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | + | tig0019570:102625-102644 | Msa1374760:intron | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | + | tig0019570:102759-102778 | Msa1374760:CDS | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | + | tig0019570:103015-103034 | Msa1374760:CDS | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | - | tig0019570:103028-103047 | None:intergenic | 45.0% | |
| GAGCCTTGATCATGATGTCA+AGG | + | tig0019570:103047-103066 | Msa1374760:CDS | 45.0% | |
| GTCCCTTGACATCATGATCA+AGG | - | tig0019570:103053-103072 | None:intergenic | 45.0% | |
| !!! | TTTGATTTTTTTTTTTTTTA+CGG | - | tig0019570:101874-101893 | None:intergenic | 5.0% |
| !!! | AATTTTATTCTTTTTTTTAA+TGG | - | tig0019570:102169-102188 | None:intergenic | 5.0% |
| !!! | TTTGATTTTTTTTTTTTTTA+CGG | - | tig0019570:101874-101893 | None:intergenic | 5.0% |
| !!! | AATTTTATTCTTTTTTTTAA+TGG | - | tig0019570:102169-102188 | None:intergenic | 5.0% |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | - | tig0019570:102379-102398 | None:intergenic | 50.0% |
| ATTCGCAGGCCATCTCTAGA+AGG | + | tig0019570:102680-102699 | Msa1374760:intron | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | + | tig0019570:103008-103027 | Msa1374760:CDS | 50.0% | |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | - | tig0019570:102379-102398 | None:intergenic | 50.0% |
| ATTCGCAGGCCATCTCTAGA+AGG | + | tig0019570:102680-102699 | Msa1374760:intron | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | + | tig0019570:103008-103027 | Msa1374760:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019570 | gene | 101443 | 103394 | 101443 | ID=Msa1374760;Name=Msa1374760 |
| tig0019570 | mRNA | 101443 | 103394 | 101443 | ID=Msa1374760-mRNA-1;Parent=Msa1374760;Name=Msa1374760-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.25|0.2|0.8|0.75|0.8|5|218|172 |
| tig0019570 | exon | 101443 | 101446 | 101443 | ID=Msa1374760-mRNA-1:exon:4089;Parent=Msa1374760-mRNA-1 |
| tig0019570 | exon | 101489 | 101568 | 101489 | ID=Msa1374760-mRNA-1:exon:4090;Parent=Msa1374760-mRNA-1 |
| tig0019570 | exon | 102317 | 102460 | 102317 | ID=Msa1374760-mRNA-1:exon:4091;Parent=Msa1374760-mRNA-1 |
| tig0019570 | exon | 102718 | 102780 | 102718 | ID=Msa1374760-mRNA-1:exon:4092;Parent=Msa1374760-mRNA-1 |
| tig0019570 | exon | 102949 | 103394 | 102949 | ID=Msa1374760-mRNA-1:exon:4093;Parent=Msa1374760-mRNA-1 |
| tig0019570 | CDS | 101443 | 101446 | 101443 | ID=Msa1374760-mRNA-1:cds;Parent=Msa1374760-mRNA-1 |
| tig0019570 | CDS | 101489 | 101568 | 101489 | ID=Msa1374760-mRNA-1:cds;Parent=Msa1374760-mRNA-1 |
| tig0019570 | CDS | 102317 | 102460 | 102317 | ID=Msa1374760-mRNA-1:cds;Parent=Msa1374760-mRNA-1 |
| tig0019570 | CDS | 102718 | 102780 | 102718 | ID=Msa1374760-mRNA-1:cds;Parent=Msa1374760-mRNA-1 |
| tig0019570 | CDS | 102949 | 103176 | 102949 | ID=Msa1374760-mRNA-1:cds;Parent=Msa1374760-mRNA-1 |
| tig0019570 | three_prime_UTR | 103177 | 103394 | 103177 | ID=Msa1374760-mRNA-1:three_prime_utr;Parent=Msa1374760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
