AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389090 MtrunA17_Chr8g0339291 97.863 468 7 1 1 468 1 465 0.0 937
Msa0389090 MtrunA17_Chr7g0235071 74.464 466 107 3 1 466 1 454 0.0 704
Msa0389090 MtrunA17_Chr8g0341821 71.150 461 117 7 1 458 1 448 0.0 619
Msa0389090 MtrunA17_Chr7g0238471 79.012 81 16 1 73 153 34 113 6.06e-41 142
Msa0389090 MtrunA17_Chr7g0238481 59.804 102 34 2 186 287 3 97 1.69e-30 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389090 AT3G07270.1 61.028 467 160 10 1 460 1 452 0.0 548
Msa0389090 AT3G07270.2 60.814 467 161 10 1 460 1 452 0.0 544

Find 164 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATGTATTTGGGATAATT+TGG 0.105309 3_1:+93697513 None:intergenic
CGTCCACTAACTAATGTATT+TGG 0.132612 3_1:+93697503 None:intergenic
CCAACCTTTGTAAATTAAAT+AGG 0.136027 3_1:+93694364 None:intergenic
TTTGATACTTTCTGCAAATC+TGG 0.223431 3_1:-93697141 Msa0389090:five_prime_UTR
TTTCAACTGACATTGCTTCT+AGG 0.247277 3_1:-93694820 Msa0389090:CDS
TCCACCTAAAAGTGGTGATA+TGG 0.266701 3_1:+93694943 None:intergenic
ATTGCAAATGCTACATCTTC+TGG 0.267208 3_1:-93694779 Msa0389090:CDS
TGCAATACTTTGCAAGAATA+AGG 0.267255 3_1:+93694796 None:intergenic
CTTACCTCCCGACTAATCTT+TGG 0.270087 3_1:-93694584 Msa0389090:three_prime_UTR
ACATAACGAACATTGGATTA+AGG 0.275924 3_1:+93697261 None:intergenic
GGCATAGATAATAATAAAAT+TGG 0.281629 3_1:-93695892 Msa0389090:CDS
TTTCTAGAATCAAGCCTAAA+AGG 0.282324 3_1:-93695571 Msa0389090:CDS
GTCTTGGTGAAGATATTAAT+AGG 0.315735 3_1:-93696950 Msa0389090:CDS
TGCTTAATCCAACAACTCTT+TGG 0.318636 3_1:+93695752 None:intergenic
TCTAGGGGAATTGAAAAGTT+TGG 0.319552 3_1:-93694878 Msa0389090:CDS
TAAATCTAGAGGCATTGATA+TGG 0.321920 3_1:-93695464 Msa0389090:CDS
TTATTATCTATGCCAGCTTC+AGG 0.326221 3_1:+93695901 None:intergenic
ATGGAAATGGAATGATTTAA+TGG 0.332206 3_1:-93694275 Msa0389090:three_prime_UTR
ATACATGTTTCGTCAGGTTC+CGG 0.333764 3_1:-93695538 Msa0389090:CDS
GAAAATGGAGTGAGTTTGTT+TGG 0.336188 3_1:-93697041 Msa0389090:CDS
CCGAGCTGAACTTGCCGTTT+TGG 0.340238 3_1:-93695132 Msa0389090:CDS
AGTATCAAACTTTCCAATAA+AGG 0.340635 3_1:+93697155 None:intergenic
CGGATTGATAGGTCCCGTTT+TGG 0.343833 3_1:+93695366 None:intergenic
GTCACACATGCATGATTTCT+AGG 0.349323 3_1:-93694895 Msa0389090:CDS
AGAAAGATTGTTTCTATGTC+AGG 0.355506 3_1:+93695589 None:intergenic
CTCCTAATCGTTTCGTGAAA+TGG 0.361018 3_1:-93695270 Msa0389090:CDS
TGGTTTCAAGCTCCAAGTTC+AGG 0.361526 3_1:-93694993 Msa0389090:CDS
AGGGTGATTATAATTCTTCT+TGG 0.375973 3_1:-93694756 Msa0389090:exon
ATCTAATAATCAGAAGAATA+TGG 0.376853 3_1:+93697327 None:intergenic
TCACATCCCTGTCAATGCTT+TGG 0.377050 3_1:+93695236 None:intergenic
TTGTAAGCCTTTCCTGAACT+TGG 0.378188 3_1:+93694981 None:intergenic
TCAGTTAGGAAGGAGCTTGC+AGG 0.382040 3_1:-93695295 Msa0389090:CDS
CATGTCGGTTACGTCCCTTC+TGG 0.382316 3_1:-93695775 Msa0389090:CDS
TACAATGGTGAGCTTGAAAA+TGG 0.382873 3_1:-93697056 Msa0389090:CDS
CAACCTTTGTAAATTAAATA+GGG 0.385863 3_1:+93694365 None:intergenic
CCTTCTGGCCAAAGAGTTGT+TGG 0.387250 3_1:-93695760 Msa0389090:CDS
AATACTGCGGTGACCATTGC+CGG 0.396163 3_1:+93695346 None:intergenic
CACCAAAGTTTCCTCCAAAA+CGG 0.401213 3_1:-93695380 Msa0389090:CDS
GTCCACTAACTAATGTATTT+GGG 0.403798 3_1:+93697504 None:intergenic
GATTATAATTCTTCTTGGAT+TGG 0.407694 3_1:-93694751 Msa0389090:three_prime_UTR
GTGTGTGATGATCAAATAAA+AGG 0.408208 3_1:+93694457 None:intergenic
ACCAAAGTTTCCTCCAAAAC+GGG 0.409382 3_1:-93695379 Msa0389090:CDS
TATAACCATCAATTCAAAAC+TGG 0.409554 3_1:+93694236 None:intergenic
CCTATTTAATTTACAAAGGT+TGG 0.412363 3_1:-93694364 Msa0389090:three_prime_UTR
ACAGCTACCATTGCTGTGTT+AGG 0.412616 3_1:-93694848 Msa0389090:CDS
ATGTGAACAACGCCGTGAAA+TGG 0.413540 3_1:+93695085 None:intergenic
GTGACCATTGCCGGATTGAT+AGG 0.415847 3_1:+93695355 None:intergenic
ATTGGTCATGCTGGCGGTGC+AGG 0.418734 3_1:-93695874 Msa0389090:CDS
CATTGGATTAAGGTTAATGT+TGG 0.422264 3_1:+93697271 None:intergenic
AGTCGGGAGGTAAGTAGAAT+TGG 0.422731 3_1:+93694593 None:intergenic
TACTTAACACTCTAGTTCTC+AGG 0.422840 3_1:+93694543 None:intergenic
ATCCCAAATACATTAGTTAG+TGG 0.426390 3_1:-93697506 Msa0389090:five_prime_UTR
CTTTCCAATAAAGGTCCAAA+AGG 0.428836 3_1:+93697164 None:intergenic
TCAGAAGAATATGGCATTTG+TGG 0.429253 3_1:+93697336 None:intergenic
GGACGATGTGATTGGTCATT+CGG 0.429425 3_1:-93697485 Msa0389090:five_prime_UTR
ATATTAATAGGGAAGGTCTT+AGG 0.430481 3_1:-93696938 Msa0389090:CDS
TATAGAGAAGAAGACTATAA+AGG 0.432062 3_1:+93694176 None:intergenic
AGCCATTTCACGAAACGATT+AGG 0.432174 3_1:+93695268 None:intergenic
ATGTTTGACTGCCATGGAAA+TGG 0.434237 3_1:-93694288 Msa0389090:three_prime_UTR
CTTTGGGAGAAGATTCAGTT+AGG 0.436286 3_1:-93695309 Msa0389090:CDS
ACTTCAAGAGCCTCAGCGTC+TGG 0.438758 3_1:-93695695 Msa0389090:CDS
AATAATAAAATTGGTCATGC+TGG 0.444404 3_1:-93695883 Msa0389090:CDS
GGGGATTGCCCGACCAATGC+TGG 0.454343 3_1:-93695426 Msa0389090:CDS
AGTGTGTTCAGCTTTACAAC+AGG 0.460100 3_1:-93695665 Msa0389090:CDS
ACACTCTAGTTCTCAGGAAA+AGG 0.460141 3_1:+93694549 None:intergenic
GGTGCTTTATTTCCTGAAGC+TGG 0.460502 3_1:-93695913 Msa0389090:CDS
AAAATGGAGTGAGTTTGTTT+GGG 0.462166 3_1:-93697040 Msa0389090:CDS
TTCAAAACTGGTAGAAGCTA+TGG 0.472542 3_1:+93694248 None:intergenic
TTGATACTTTCTGCAAATCT+GGG 0.475166 3_1:-93697140 Msa0389090:five_prime_UTR
TATGGAAAATATTCATGCTC+GGG 0.478199 3_1:-93695446 Msa0389090:CDS
CATCATATACTTCCATTTCA+CGG 0.483542 3_1:-93695097 Msa0389090:CDS
TCTTGGTGAAGATATTAATA+GGG 0.485627 3_1:-93696949 Msa0389090:CDS
CAGAAGAATATGGCATTTGT+GGG 0.489954 3_1:+93697337 None:intergenic
TGAACTTCCAAAGCATTGAC+AGG 0.490128 3_1:-93695243 Msa0389090:CDS
GGGAGAAGATTCAGTTAGGA+AGG 0.492445 3_1:-93695305 Msa0389090:CDS
GATGGACACCAGCATTGGTC+GGG 0.492769 3_1:+93695418 None:intergenic
TAGTTAGTGGACGATGTGAT+TGG 0.492827 3_1:-93697493 Msa0389090:five_prime_UTR
GTGATGCTCTATTGAGATAG+AGG 0.493671 3_1:-93697389 Msa0389090:five_prime_UTR
ATGGTAATCCAAAGATTAGT+CGG 0.496910 3_1:+93694576 None:intergenic
GCGAAGATACATGTTTCGTC+AGG 0.498142 3_1:-93695544 Msa0389090:CDS
GGAAACTTTGGTGGAAAGAG+TGG 0.500080 3_1:+93695390 None:intergenic
AACCGACATGACATTTGACT+TGG 0.512030 3_1:+93695788 None:intergenic
GTGGAAAGAGTGGAGAGAGA+TGG 0.512679 3_1:+93695400 None:intergenic
ATTAAATCATTCCATTTCCA+TGG 0.514829 3_1:+93694277 None:intergenic
ATAGGATATTTCCTTTCAGA+AGG 0.515226 3_1:-93695064 Msa0389090:CDS
ATTACATTTCCACCTAAAAG+TGG 0.515978 3_1:+93694935 None:intergenic
ATAAAACCTTTGAATGCTGC+TGG 0.516330 3_1:-93695187 Msa0389090:CDS
TGTGGGGAGGATGTTGTTGT+CGG 0.519500 3_1:+93697354 None:intergenic
CAACAGGGAATTCAACCAGC+AGG 0.521643 3_1:-93695649 Msa0389090:CDS
TCACACATGCATGATTTCTA+GGG 0.524065 3_1:-93694894 Msa0389090:CDS
TCAGAAGGATTCAGTCCGAT+TGG 0.524883 3_1:-93695049 Msa0389090:CDS
AAGGTTAATGTTGGAATGTG+TGG 0.531091 3_1:+93697280 None:intergenic
AGTACGATGGCTACCCCTGC+TGG 0.534876 3_1:+93695634 None:intergenic
GTCACCAAAATAAAACTTGG+TGG 0.535321 3_1:+93694509 None:intergenic
ATATGGAAAATATTCATGCT+CGG 0.536544 3_1:-93695447 Msa0389090:CDS
GTGTGTAGACTCTGCATTGG+TGG 0.537769 3_1:+93694672 None:intergenic
CAGTTAGGAAGGAGCTTGCA+GGG 0.539632 3_1:-93695294 Msa0389090:CDS
GTTGGAATGTGTGGATCCTA+AGG 0.544756 3_1:+93697289 None:intergenic
CAAAACGGGACCTATCAATC+CGG 0.547377 3_1:-93695365 Msa0389090:CDS
ACATGACATTTGACTTGGAA+AGG 0.549188 3_1:+93695793 None:intergenic
TTACAATACAGAGAAACCTT+AGG 0.550665 3_1:-93697305 Msa0389090:five_prime_UTR
TCAAGCTCCAAGTTCAGGAA+AGG 0.552246 3_1:-93694988 Msa0389090:CDS
TGGTAATCCAAAGATTAGTC+GGG 0.553278 3_1:+93694577 None:intergenic
TGCTCACATTGTGACCAAAA+CGG 0.553718 3_1:+93695118 None:intergenic
AAGATTCACAGTAGGAATAG+AGG 0.553746 3_1:+93695824 None:intergenic
ACCTCGCCAGCAGCATTCAA+AGG 0.556508 3_1:+93695181 None:intergenic
TAGAATCAAGCCTAAAAGGT+GGG 0.558239 3_1:-93695567 Msa0389090:CDS
AAAGGTGAGAAGACAAAACT+TGG 0.558987 3_1:+93694475 None:intergenic
CAACAACTCTTTGGCCAGAA+GGG 0.562430 3_1:+93695761 None:intergenic
GGTCATGCTGGCGGTGCAGG+CGG 0.562662 3_1:-93695871 Msa0389090:CDS
ATTCCCTATTTAATTTACAA+AGG 0.563853 3_1:-93694368 Msa0389090:three_prime_UTR
AAAGTGAAGGACATTGTTGA+AGG 0.564141 3_1:-93695934 Msa0389090:CDS
TTGCAAATGTTTGACTGCCA+TGG 0.565324 3_1:-93694294 Msa0389090:three_prime_UTR
AGAGAGATGGACACCAGCAT+TGG 0.567275 3_1:+93695413 None:intergenic
GACAGGGATGTGAAGCTGAA+TGG 0.568364 3_1:-93695226 Msa0389090:CDS
TTTCCAATAAAGGTCCAAAA+GGG 0.569415 3_1:+93697165 None:intergenic
CTGAATGGCTCCATCTGTGG+CGG 0.572648 3_1:-93695211 Msa0389090:CDS
CCAACAACTCTTTGGCCAGA+AGG 0.572834 3_1:+93695760 None:intergenic
TTTCACGGCGTTGTTCACAT+AGG 0.573583 3_1:-93695082 Msa0389090:CDS
TGTGTCACCAAAATAAAACT+TGG 0.579168 3_1:+93694506 None:intergenic
ACCTTTGAATGCTGCTGGCG+AGG 0.582613 3_1:-93695182 Msa0389090:CDS
TGAATGGCTCCATCTGTGGC+GGG 0.585957 3_1:-93695210 Msa0389090:CDS
AATAAAATTGGTCATGCTGG+CGG 0.590054 3_1:-93695880 Msa0389090:CDS
AGATGGACACCAGCATTGGT+CGG 0.590547 3_1:+93695417 None:intergenic
AGGAATAGAGGTCAATGTCT+CGG 0.592016 3_1:+93695836 None:intergenic
GACACCACATCGTGTTGCAA+AGG 0.593098 3_1:-93696913 Msa0389090:CDS
GGGACCTATCAATCCGGCAA+TGG 0.594081 3_1:-93695359 Msa0389090:CDS
CTATGTCAAGATTTACATGA+TGG 0.594768 3_1:-93694402 Msa0389090:three_prime_UTR
GCAAATGCTACATCTTCTGG+AGG 0.595070 3_1:-93694776 Msa0389090:CDS
AACAGGGAATTCAACCAGCA+GGG 0.596189 3_1:-93695648 Msa0389090:CDS
AAGTCGTTTAGCAAATACTT+CGG 0.596692 3_1:+93695714 None:intergenic
AAGCTGAATGGCTCCATCTG+TGG 0.597856 3_1:-93695214 Msa0389090:CDS
GGTGAAGATATTAATAGGGA+AGG 0.598277 3_1:-93696945 Msa0389090:CDS
TTTGATGAGGTGTGTTACAA+TGG 0.598703 3_1:-93697071 Msa0389090:CDS
GTTCTCAGGAAAAGGAGTCA+TGG 0.605666 3_1:+93694557 None:intergenic
AAATGTAATAGTAGTTGTAG+AGG 0.609306 3_1:-93694921 Msa0389090:CDS
TCGGACTGAATCCTTCTGAA+AGG 0.610194 3_1:+93695053 None:intergenic
GTTGCAAAGGCTCTTCGTGA+AGG 0.616197 3_1:-93696900 Msa0389090:CDS
CCAAAACGGCAAGTTCAGCT+CGG 0.621341 3_1:+93695132 None:intergenic
AGAATCAAGCCTAAAAGGTG+GGG 0.621752 3_1:-93695566 Msa0389090:CDS
GAGTTTGTTTGGGTGCAGTG+AGG 0.622421 3_1:-93697030 Msa0389090:CDS
AGAATATGGCATTTGTGGGG+AGG 0.623911 3_1:+93697341 None:intergenic
GCTCTTCGTGAAGGAACTAG+AGG 0.624632 3_1:-93696891 Msa0389090:intron
TAGCAAACAAGATTCACAGT+AGG 0.626754 3_1:+93695816 None:intergenic
TTCCAAGTCAAATGTCATGT+CGG 0.630990 3_1:-93695790 Msa0389090:CDS
CTAGAATCAAGCCTAAAAGG+TGG 0.636682 3_1:-93695568 Msa0389090:CDS
ACTTCGTCTGCCAGACGCTG+AGG 0.637304 3_1:+93695685 None:intergenic
GAACTTCCAAAGCATTGACA+GGG 0.642979 3_1:-93695242 Msa0389090:CDS
AGAGCCTTTGCAACACGATG+TGG 0.644665 3_1:+93696909 None:intergenic
ATGGAAAATATTCATGCTCG+GGG 0.645748 3_1:-93695445 Msa0389090:CDS
AAAGCATCCTAACACAGCAA+TGG 0.646055 3_1:+93694841 None:intergenic
GATGTCTTCTGACTTTATCG+AGG 0.647860 3_1:+93694648 None:intergenic
GGTGTGTGTAGACTCTGCAT+TGG 0.649317 3_1:+93694669 None:intergenic
TAATCCAAAGATTAGTCGGG+AGG 0.657655 3_1:+93694580 None:intergenic
GTGTGTTCAGCTTTACAACA+GGG 0.658653 3_1:-93695664 Msa0389090:CDS
CACACATGCATGATTTCTAG+GGG 0.664632 3_1:-93694893 Msa0389090:CDS
TGAGATAGAGGATATCTATG+TGG 0.670816 3_1:-93697377 Msa0389090:five_prime_UTR
TTTGAATGCTGCTGGCGAGG+TGG 0.672064 3_1:-93695179 Msa0389090:CDS
GTGCAGTGAGGTTGAAGATG+AGG 0.675141 3_1:-93697018 Msa0389090:CDS
ACAGGGAATTCAACCAGCAG+GGG 0.676707 3_1:-93695647 Msa0389090:CDS
CAAATGCTACATCTTCTGGA+GGG 0.677186 3_1:-93694775 Msa0389090:CDS
AGAAGAATATGGCATTTGTG+GGG 0.703428 3_1:+93697338 None:intergenic
ATGTGTACACTGAAGTACGA+TGG 0.705661 3_1:+93695621 None:intergenic
TTGCTATTGAAGATGCTGTG+AGG 0.756355 3_1:-93696986 Msa0389090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATTTGTTTAAATATT+TGG - chr3_1:93694955-93694974 Msa0389090:CDS 10.0%
!!! TCTTAATTTTTGCTATTTTT+TGG - chr3_1:93694586-93694605 Msa0389090:three_prime_UTR 15.0%
!!! CATTGATGTTTTTTTTTTAT+GGG - chr3_1:93695024-93695043 Msa0389090:CDS 15.0%
!!! ATTAATCTTTTAACCATTTT+AGG - chr3_1:93695279-93695298 Msa0389090:CDS 15.0%
!!! TTAATCTTTTAACCATTTTA+GGG - chr3_1:93695280-93695299 Msa0389090:CDS 15.0%
!!! TTTTATCTTATTAAATCTAG+AGG - chr3_1:93696224-93696243 Msa0389090:intron 15.0%
!!! ATTTTCAATTCTAAAATCTT+TGG - chr3_1:93696373-93696392 Msa0389090:intron 15.0%
!!! TTTTCAATTCTAAAATCTTT+GGG - chr3_1:93696374-93696393 Msa0389090:intron 15.0%
!!! ATAATTTTGACATCCAAAAA+GGG + chr3_1:93694264-93694283 None:intergenic 20.0%
!! ATCTAATAATCAGAAGAATA+TGG + chr3_1:93694375-93694394 None:intergenic 20.0%
!! TAAAAAAACATAACGAACAT+TGG + chr3_1:93694448-93694467 None:intergenic 20.0%
!!! GCATTGATGTTTTTTTTTTA+TGG - chr3_1:93695023-93695042 Msa0389090:CDS 20.0%
!! GGAAGAGAATAATAATTATT+GGG + chr3_1:93695645-93695664 None:intergenic 20.0%
!! TGGAAGAGAATAATAATTAT+TGG + chr3_1:93695646-93695665 None:intergenic 20.0%
!! GGCATAGATAATAATAAAAT+TGG - chr3_1:93695807-93695826 Msa0389090:CDS 20.0%
!!! TTTTAGAATTGAAAATACTG+CGG + chr3_1:93696369-93696388 None:intergenic 20.0%
!!! ATTCCCTATTTAATTTACAA+AGG - chr3_1:93697331-93697350 Msa0389090:five_prime_UTR 20.0%
!! CAACCTTTGTAAATTAAATA+GGG + chr3_1:93697337-93697356 None:intergenic 20.0%
!! CTAATGTATTTGGGATAATT+TGG + chr3_1:93694189-93694208 None:intergenic 25.0%
!!! CATAATTTTGACATCCAAAA+AGG + chr3_1:93694265-93694284 None:intergenic 25.0%
!! TTTTGGATGTCAAAATTATG+AGG - chr3_1:93694265-93694284 Msa0389090:three_prime_UTR 25.0%
!!! AATTTTTTCTATCACCCTTT+TGG - chr3_1:93694520-93694539 Msa0389090:three_prime_UTR 25.0%
! AGTATCAAACTTTCCAATAA+AGG + chr3_1:93694547-93694566 None:intergenic 25.0%
!!! ATTTTTTGGTGTGATATCAA+TGG - chr3_1:93694600-93694619 Msa0389090:three_prime_UTR 25.0%
!!! TTTTTTGGTGTGATATCAAT+GGG - chr3_1:93694601-93694620 Msa0389090:three_prime_UTR 25.0%
! TCTTGGTGAAGATATTAATA+GGG - chr3_1:93694750-93694769 Msa0389090:three_prime_UTR 25.0%
!! GAACACTAATGATTTTTGTT+TGG - chr3_1:93694833-93694852 Msa0389090:CDS 25.0%
! TTATCTAGAGATTAATGAGT+TGG - chr3_1:93695065-93695084 Msa0389090:CDS 25.0%
! TAGTATATGATAGAACATTC+TGG - chr3_1:93695097-93695116 Msa0389090:CDS 25.0%
! GTATGGTTCAATATCTAAAT+TGG - chr3_1:93695212-93695231 Msa0389090:CDS 25.0%
! GTTCAATATCTAAATTGGAT+AGG - chr3_1:93695217-93695236 Msa0389090:CDS 25.0%
! ATATTCAAACTTCCCTAAAA+TGG + chr3_1:93695295-93695314 None:intergenic 25.0%
! GAAAAAAATGATTGTAGTCA+AGG - chr3_1:93695328-93695347 Msa0389090:CDS 25.0%
! TATTTAAGTGAGAGATAAAG+AGG - chr3_1:93695555-93695574 Msa0389090:CDS 25.0%
! AATTATTGGGCTAATATGTT+AGG + chr3_1:93695632-93695651 None:intergenic 25.0%
! AAAACAAGAGAGCAAATTAT+TGG + chr3_1:93695666-93695685 None:intergenic 25.0%
! AATAATAAAATTGGTCATGC+TGG - chr3_1:93695816-93695835 Msa0389090:CDS 25.0%
! ATATGGAAAATATTCATGCT+CGG - chr3_1:93696252-93696271 Msa0389090:intron 25.0%
!! TGTAAAAGTGATTTTCCAAT+CGG + chr3_1:93696668-93696687 None:intergenic 25.0%
! AAATGTAATAGTAGTTGTAG+AGG - chr3_1:93696778-93696797 Msa0389090:intron 25.0%
! GATTATAATTCTTCTTGGAT+TGG - chr3_1:93696948-93696967 Msa0389090:CDS 25.0%
!!! AAATCCACCAAGTTTTATTT+TGG - chr3_1:93697186-93697205 Msa0389090:five_prime_UTR 25.0%
! CCAACCTTTGTAAATTAAAT+AGG + chr3_1:93697338-93697357 None:intergenic 25.0%
!! CCTATTTAATTTACAAAGGT+TGG - chr3_1:93697335-93697354 Msa0389090:five_prime_UTR 25.0%
!!! GATTGTTTTGTGTAATGTAA+AGG - chr3_1:93697368-93697387 Msa0389090:five_prime_UTR 25.0%
! ATTAAATCATTCCATTTCCA+TGG + chr3_1:93697425-93697444 None:intergenic 25.0%
! ATGGAAATGGAATGATTTAA+TGG - chr3_1:93697424-93697443 Msa0389090:five_prime_UTR 25.0%
! TATAACCATCAATTCAAAAC+TGG + chr3_1:93697466-93697485 None:intergenic 25.0%
! TATAGAGAAGAAGACTATAA+AGG + chr3_1:93697526-93697545 None:intergenic 25.0%
ATCCCAAATACATTAGTTAG+TGG - chr3_1:93694193-93694212 Msa0389090:three_prime_UTR 30.0%
GTCCACTAACTAATGTATTT+GGG + chr3_1:93694198-93694217 None:intergenic 30.0%
! TACATGTTTAAGTCCCTTTT+TGG - chr3_1:93694248-93694267 Msa0389090:three_prime_UTR 30.0%
TTACAATACAGAGAAACCTT+AGG - chr3_1:93694394-93694413 Msa0389090:three_prime_UTR 30.0%
CATTGGATTAAGGTTAATGT+TGG + chr3_1:93694431-93694450 None:intergenic 30.0%
ACATAACGAACATTGGATTA+AGG + chr3_1:93694441-93694460 None:intergenic 30.0%
TTTCCAATAAAGGTCCAAAA+GGG + chr3_1:93694537-93694556 None:intergenic 30.0%
TTTGATACTTTCTGCAAATC+TGG - chr3_1:93694558-93694577 Msa0389090:three_prime_UTR 30.0%
TTGATACTTTCTGCAAATCT+GGG - chr3_1:93694559-93694578 Msa0389090:three_prime_UTR 30.0%
! AAAATGGAGTGAGTTTGTTT+GGG - chr3_1:93694659-93694678 Msa0389090:three_prime_UTR 30.0%
GTCTTGGTGAAGATATTAAT+AGG - chr3_1:93694749-93694768 Msa0389090:three_prime_UTR 30.0%
ATATTAATAGGGAAGGTCTT+AGG - chr3_1:93694761-93694780 Msa0389090:exon 30.0%
GGTATAAGATTTCTTTCAAG+TGG - chr3_1:93694976-93694995 Msa0389090:CDS 30.0%
! TAAGATTTCTTTCAAGTGGT+TGG - chr3_1:93694980-93694999 Msa0389090:CDS 30.0%
!! ATAGTTTTTCAACTTTCCTG+CGG - chr3_1:93695178-93695197 Msa0389090:CDS 30.0%
AGGAAATTCGTGTGATTTAT+TGG - chr3_1:93695348-93695367 Msa0389090:CDS 30.0%
TACGAAAATATTCGATCAAC+AGG - chr3_1:93695439-93695458 Msa0389090:CDS 30.0%
ACGAAAATATTCGATCAACA+GGG - chr3_1:93695440-93695459 Msa0389090:CDS 30.0%
CAGAAACAAGAGAAAGAAAT+CGG + chr3_1:93695594-93695613 None:intergenic 30.0%
! TTTTGTCTATAACCTGGAAA+AGG + chr3_1:93695747-93695766 None:intergenic 30.0%
!!! TTCACTTTTTGTCTATAACC+TGG + chr3_1:93695753-93695772 None:intergenic 30.0%
AGGTTATAGACAAAAAGTGA+AGG - chr3_1:93695752-93695771 Msa0389090:CDS 30.0%
AAGTCGTTTAGCAAATACTT+CGG + chr3_1:93695988-93696007 None:intergenic 30.0%
!! AGAAAGATTGTTTCTATGTC+AGG + chr3_1:93696113-93696132 None:intergenic 30.0%
!! TTTCTAGAATCAAGCCTAAA+AGG - chr3_1:93696128-93696147 Msa0389090:intron 30.0%
!! TAAATCTAGAGGCATTGATA+TGG - chr3_1:93696235-93696254 Msa0389090:intron 30.0%
TATGGAAAATATTCATGCTC+GGG - chr3_1:93696253-93696272 Msa0389090:intron 30.0%
CATCATATACTTCCATTTCA+CGG - chr3_1:93696602-93696621 Msa0389090:intron 30.0%
ATAGGATATTTCCTTTCAGA+AGG - chr3_1:93696635-93696654 Msa0389090:intron 30.0%
ATTACATTTCCACCTAAAAG+TGG + chr3_1:93696767-93696786 None:intergenic 30.0%
TGCAATACTTTGCAAGAATA+AGG + chr3_1:93696906-93696925 None:intergenic 30.0%
AGGGTGATTATAATTCTTCT+TGG - chr3_1:93696943-93696962 Msa0389090:CDS 30.0%
! TCGTTTTCTGCAATTTTTGA+AGG - chr3_1:93696996-93697015 Msa0389090:CDS 30.0%
ATGGTAATCCAAAGATTAGT+CGG + chr3_1:93697126-93697145 None:intergenic 30.0%
TGTGTCACCAAAATAAAACT+TGG + chr3_1:93697196-93697215 None:intergenic 30.0%
!!! AAGTTTTATTTTGGTGACAC+AGG - chr3_1:93697195-93697214 Msa0389090:five_prime_UTR 30.0%
GTGTGTGATGATCAAATAAA+AGG + chr3_1:93697245-93697264 None:intergenic 30.0%
CTATGTCAAGATTTACATGA+TGG - chr3_1:93697297-93697316 Msa0389090:five_prime_UTR 30.0%
!!! TTCTACCAGTTTTGAATTGA+TGG - chr3_1:93697458-93697477 Msa0389090:five_prime_UTR 30.0%
CGTCCACTAACTAATGTATT+TGG + chr3_1:93694199-93694218 None:intergenic 35.0%
TGAGATAGAGGATATCTATG+TGG - chr3_1:93694322-93694341 Msa0389090:three_prime_UTR 35.0%
AGAAGAATATGGCATTTGTG+GGG + chr3_1:93694364-93694383 None:intergenic 35.0%
CAGAAGAATATGGCATTTGT+GGG + chr3_1:93694365-93694384 None:intergenic 35.0%
TCAGAAGAATATGGCATTTG+TGG + chr3_1:93694366-93694385 None:intergenic 35.0%
AAGGTTAATGTTGGAATGTG+TGG + chr3_1:93694422-93694441 None:intergenic 35.0%
CTTTCCAATAAAGGTCCAAA+AGG + chr3_1:93694538-93694557 None:intergenic 35.0%
!!! ATCAATGGGATGTTTTGATG+AGG - chr3_1:93694615-93694634 Msa0389090:three_prime_UTR 35.0%
TTTGATGAGGTGTGTTACAA+TGG - chr3_1:93694628-93694647 Msa0389090:three_prime_UTR 35.0%
TACAATGGTGAGCTTGAAAA+TGG - chr3_1:93694643-93694662 Msa0389090:three_prime_UTR 35.0%
! GAAAATGGAGTGAGTTTGTT+TGG - chr3_1:93694658-93694677 Msa0389090:three_prime_UTR 35.0%
GGTGAAGATATTAATAGGGA+AGG - chr3_1:93694754-93694773 Msa0389090:exon 35.0%
TAGGAAGTTGTTCATGTTAG+TGG - chr3_1:93695236-93695255 Msa0389090:CDS 35.0%
AGGAAGTTGTTCATGTTAGT+GGG - chr3_1:93695237-93695256 Msa0389090:CDS 35.0%
CATGTTAGTGGGATGTATAT+AGG - chr3_1:93695248-93695267 Msa0389090:CDS 35.0%
CATAGTATGTGATTAGTGCA+TGG - chr3_1:93695376-93695395 Msa0389090:CDS 35.0%
AAGTGAGAGATAAAGAGGAA+TGG - chr3_1:93695560-93695579 Msa0389090:CDS 35.0%
AAAGTGAAGGACATTGTTGA+AGG - chr3_1:93695765-93695784 Msa0389090:CDS 35.0%
TTATTATCTATGCCAGCTTC+AGG + chr3_1:93695801-93695820 None:intergenic 35.0%
AATAAAATTGGTCATGCTGG+CGG - chr3_1:93695819-93695838 Msa0389090:CDS 35.0%
AAGATTCACAGTAGGAATAG+AGG + chr3_1:93695878-93695897 None:intergenic 35.0%
TAGCAAACAAGATTCACAGT+AGG + chr3_1:93695886-93695905 None:intergenic 35.0%
!! ACATGACATTTGACTTGGAA+AGG + chr3_1:93695909-93695928 None:intergenic 35.0%
TTCCAAGTCAAATGTCATGT+CGG - chr3_1:93695909-93695928 Msa0389090:CDS 35.0%
TGCTTAATCCAACAACTCTT+TGG + chr3_1:93695950-93695969 None:intergenic 35.0%
TAGAATCAAGCCTAAAAGGT+GGG - chr3_1:93696132-93696151 Msa0389090:intron 35.0%
!!! GTTTTTGTTTTCAAAGACGC+CGG + chr3_1:93696183-93696202 None:intergenic 35.0%
AAAACAAAAACGCAGACGTA+TGG - chr3_1:93696192-93696211 Msa0389090:intron 35.0%
AAACAAAAACGCAGACGTAT+GGG - chr3_1:93696193-93696212 Msa0389090:intron 35.0%
ATGGAAAATATTCATGCTCG+GGG - chr3_1:93696254-93696273 Msa0389090:intron 35.0%
ATAAAACCTTTGAATGCTGC+TGG - chr3_1:93696512-93696531 Msa0389090:intron 35.0%
! CAGTCGATAGTGCATTTTTA+TGG - chr3_1:93696686-93696705 Msa0389090:intron 35.0%
!! GAAACCATATCACCACTTTT+AGG - chr3_1:93696752-93696771 Msa0389090:intron 35.0%
TCACACATGCATGATTTCTA+GGG - chr3_1:93696805-93696824 Msa0389090:intron 35.0%
TCTAGGGGAATTGAAAAGTT+TGG - chr3_1:93696821-93696840 Msa0389090:intron 35.0%
TTTCAACTGACATTGCTTCT+AGG - chr3_1:93696879-93696898 Msa0389090:intron 35.0%
ATTGCAAATGCTACATCTTC+TGG - chr3_1:93696920-93696939 Msa0389090:CDS 35.0%
! TGGTAATCCAAAGATTAGTC+GGG + chr3_1:93697125-93697144 None:intergenic 35.0%
!! TACTTAACACTCTAGTTCTC+AGG + chr3_1:93697159-93697178 None:intergenic 35.0%
GTCACCAAAATAAAACTTGG+TGG + chr3_1:93697193-93697212 None:intergenic 35.0%
AAAGGTGAGAAGACAAAACT+TGG + chr3_1:93697227-93697246 None:intergenic 35.0%
AAACCACCTCAGAAAAATTC+AGG - chr3_1:93697268-93697287 Msa0389090:five_prime_UTR 35.0%
AACCACCTCAGAAAAATTCA+GGG - chr3_1:93697269-93697288 Msa0389090:five_prime_UTR 35.0%
TTCAAAACTGGTAGAAGCTA+TGG + chr3_1:93697454-93697473 None:intergenic 35.0%
! TAGTTAGTGGACGATGTGAT+TGG - chr3_1:93694206-93694225 Msa0389090:three_prime_UTR 40.0%
GTGATGCTCTATTGAGATAG+AGG - chr3_1:93694310-93694329 Msa0389090:three_prime_UTR 40.0%
! TCACCCTTTTGGACCTTTAT+TGG - chr3_1:93694531-93694550 Msa0389090:three_prime_UTR 40.0%
! TTGCTATTGAAGATGCTGTG+AGG - chr3_1:93694713-93694732 Msa0389090:three_prime_UTR 40.0%
! TGCTGTGAGGATTCTTTTGT+TGG - chr3_1:93694726-93694745 Msa0389090:three_prime_UTR 40.0%
! GCTGTGAGGATTCTTTTGTT+GGG - chr3_1:93694727-93694746 Msa0389090:three_prime_UTR 40.0%
! AGGATTCTTTTGTTGGGTCT+TGG - chr3_1:93694733-93694752 Msa0389090:three_prime_UTR 40.0%
CATACACAATTCTATTCCGC+AGG + chr3_1:93695197-93695216 None:intergenic 40.0%
CTGCGGAATAGAATTGTGTA+TGG - chr3_1:93695195-93695214 Msa0389090:CDS 40.0%
!! CTTTTTGCTGTGTTGAGCAT+TGG - chr3_1:93695500-93695519 Msa0389090:CDS 40.0%
! TGAAGCAATGAACCTTTTCC+AGG - chr3_1:93695732-93695751 Msa0389090:CDS 40.0%
AGGAATAGAGGTCAATGTCT+CGG + chr3_1:93695866-93695885 None:intergenic 40.0%
AACCGACATGACATTTGACT+TGG + chr3_1:93695914-93695933 None:intergenic 40.0%
AGTGTGTTCAGCTTTACAAC+AGG - chr3_1:93696034-93696053 Msa0389090:intron 40.0%
GTGTGTTCAGCTTTACAACA+GGG - chr3_1:93696035-93696054 Msa0389090:intron 40.0%
ATGTGTACACTGAAGTACGA+TGG + chr3_1:93696081-93696100 None:intergenic 40.0%
CTAGAATCAAGCCTAAAAGG+TGG - chr3_1:93696131-93696150 Msa0389090:intron 40.0%
AGAATCAAGCCTAAAAGGTG+GGG - chr3_1:93696133-93696152 Msa0389090:intron 40.0%
ATACATGTTTCGTCAGGTTC+CGG - chr3_1:93696161-93696180 Msa0389090:intron 40.0%
CACCAAAGTTTCCTCCAAAA+CGG - chr3_1:93696319-93696338 Msa0389090:intron 40.0%
ACCAAAGTTTCCTCCAAAAC+GGG - chr3_1:93696320-93696339 Msa0389090:intron 40.0%
! CTTTGGGAGAAGATTCAGTT+AGG - chr3_1:93696390-93696409 Msa0389090:intron 40.0%
CTCCTAATCGTTTCGTGAAA+TGG - chr3_1:93696429-93696448 Msa0389090:intron 40.0%
AGCCATTTCACGAAACGATT+AGG + chr3_1:93696434-93696453 None:intergenic 40.0%
!! TGAACTTCCAAAGCATTGAC+AGG - chr3_1:93696456-93696475 Msa0389090:intron 40.0%
!! GAACTTCCAAAGCATTGACA+GGG - chr3_1:93696457-93696476 Msa0389090:intron 40.0%
TGCTCACATTGTGACCAAAA+CGG + chr3_1:93696584-93696603 None:intergenic 40.0%
TTGTAAGCCTTTCCTGAACT+TGG + chr3_1:93696721-93696740 None:intergenic 40.0%
!! ACCATATCACCACTTTTAGG+TGG - chr3_1:93696755-93696774 Msa0389090:intron 40.0%
TCCACCTAAAAGTGGTGATA+TGG + chr3_1:93696759-93696778 None:intergenic 40.0%
GTCACACATGCATGATTTCT+AGG - chr3_1:93696804-93696823 Msa0389090:intron 40.0%
! CACACATGCATGATTTCTAG+GGG - chr3_1:93696806-93696825 Msa0389090:intron 40.0%
! AAAGCATCCTAACACAGCAA+TGG + chr3_1:93696861-93696880 None:intergenic 40.0%
CAAATGCTACATCTTCTGGA+GGG - chr3_1:93696924-93696943 Msa0389090:CDS 40.0%
GATGTCTTCTGACTTTATCG+AGG + chr3_1:93697054-93697073 None:intergenic 40.0%
! TAATCCAAAGATTAGTCGGG+AGG + chr3_1:93697122-93697141 None:intergenic 40.0%
!! ACACTCTAGTTCTCAGGAAA+AGG + chr3_1:93697153-93697172 None:intergenic 40.0%
ACCACCTCAGAAAAATTCAG+GGG - chr3_1:93697270-93697289 Msa0389090:five_prime_UTR 40.0%
TTGCAAATGTTTGACTGCCA+TGG - chr3_1:93697405-93697424 Msa0389090:five_prime_UTR 40.0%
ATGTTTGACTGCCATGGAAA+TGG - chr3_1:93697411-93697430 Msa0389090:five_prime_UTR 40.0%
! GGACGATGTGATTGGTCATT+CGG - chr3_1:93694214-93694233 Msa0389090:three_prime_UTR 45.0%
AGAATATGGCATTTGTGGGG+AGG + chr3_1:93694361-93694380 None:intergenic 45.0%
GTTGGAATGTGTGGATCCTA+AGG + chr3_1:93694413-93694432 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3_1:93695146-93695165 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3_1:93695147-93695166 None:intergenic 45.0%
!! GGTGCTTTATTTCCTGAAGC+TGG - chr3_1:93695786-93695805 Msa0389090:CDS 45.0%
CAACAACTCTTTGGCCAGAA+GGG + chr3_1:93695941-93695960 None:intergenic 45.0%
AACAGGGAATTCAACCAGCA+GGG - chr3_1:93696051-93696070 Msa0389090:intron 45.0%
GCGAAGATACATGTTTCGTC+AGG - chr3_1:93696155-93696174 Msa0389090:intron 45.0%
GGAAACTTTGGTGGAAAGAG+TGG + chr3_1:93696312-93696331 None:intergenic 45.0%
!!! CGTTTTGGAGGAAACTTTGG+TGG + chr3_1:93696321-93696340 None:intergenic 45.0%
!!! TCCCGTTTTGGAGGAAACTT+TGG + chr3_1:93696324-93696343 None:intergenic 45.0%
! ATTGATAGGTCCCGTTTTGG+AGG + chr3_1:93696333-93696352 None:intergenic 45.0%
CAAAACGGGACCTATCAATC+CGG - chr3_1:93696334-93696353 Msa0389090:intron 45.0%
GGGAGAAGATTCAGTTAGGA+AGG - chr3_1:93696394-93696413 Msa0389090:intron 45.0%
TCACATCCCTGTCAATGCTT+TGG + chr3_1:93696466-93696485 None:intergenic 45.0%
ATGTGAACAACGCCGTGAAA+TGG + chr3_1:93696617-93696636 None:intergenic 45.0%
TTTCACGGCGTTGTTCACAT+AGG - chr3_1:93696617-93696636 Msa0389090:intron 45.0%
TCGGACTGAATCCTTCTGAA+AGG + chr3_1:93696649-93696668 None:intergenic 45.0%
TCAGAAGGATTCAGTCCGAT+TGG - chr3_1:93696650-93696669 Msa0389090:intron 45.0%
TGGTTTCAAGCTCCAAGTTC+AGG - chr3_1:93696706-93696725 Msa0389090:intron 45.0%
TCAAGCTCCAAGTTCAGGAA+AGG - chr3_1:93696711-93696730 Msa0389090:intron 45.0%
ACAGCTACCATTGCTGTGTT+AGG - chr3_1:93696851-93696870 Msa0389090:intron 45.0%
GCAAATGCTACATCTTCTGG+AGG - chr3_1:93696923-93696942 Msa0389090:CDS 45.0%
AGTCGGGAGGTAAGTAGAAT+TGG + chr3_1:93697109-93697128 None:intergenic 45.0%
CTTACCTCCCGACTAATCTT+TGG - chr3_1:93697115-93697134 Msa0389090:five_prime_UTR 45.0%
GTTCTCAGGAAAAGGAGTCA+TGG + chr3_1:93697145-93697164 None:intergenic 45.0%
CCACCTCAGAAAAATTCAGG+GGG - chr3_1:93697271-93697290 Msa0389090:five_prime_UTR 45.0%
! TGACCCCCTGAATTTTTCTG+AGG + chr3_1:93697277-93697296 None:intergenic 45.0%
TGTGGGGAGGATGTTGTTGT+CGG + chr3_1:93694348-93694367 None:intergenic 50.0%
! GAGTTTGTTTGGGTGCAGTG+AGG - chr3_1:93694669-93694688 Msa0389090:three_prime_UTR 50.0%
GTGCAGTGAGGTTGAAGATG+AGG - chr3_1:93694681-93694700 Msa0389090:three_prime_UTR 50.0%
GACACCACATCGTGTTGCAA+AGG - chr3_1:93694786-93694805 Msa0389090:CDS 50.0%
AGAGCCTTTGCAACACGATG+TGG + chr3_1:93694793-93694812 None:intergenic 50.0%
GTTGCAAAGGCTCTTCGTGA+AGG - chr3_1:93694799-93694818 Msa0389090:CDS 50.0%
GCTCTTCGTGAAGGAACTAG+AGG - chr3_1:93694808-93694827 Msa0389090:CDS 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr3_1:93695134-93695153 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr3_1:93695133-93695152 Msa0389090:CDS 50.0%
TGTAGCTGACCCCACTTAGT+GGG - chr3_1:93695134-93695153 Msa0389090:CDS 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr3_1:93695140-93695159 Msa0389090:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3_1:93695148-93695167 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3_1:93695145-93695164 Msa0389090:CDS 50.0%
GTGCATGGAGAGATGTTCTG+AGG - chr3_1:93695391-93695410 Msa0389090:CDS 50.0%
CCAACAACTCTTTGGCCAGA+AGG + chr3_1:93695942-93695961 None:intergenic 50.0%
CCTTCTGGCCAAAGAGTTGT+TGG - chr3_1:93695939-93695958 Msa0389090:CDS 50.0%
CAACAGGGAATTCAACCAGC+AGG - chr3_1:93696050-93696069 Msa0389090:intron 50.0%
ACAGGGAATTCAACCAGCAG+GGG - chr3_1:93696052-93696071 Msa0389090:intron 50.0%
! GTATCTTCGCCCCACCTTTT+AGG + chr3_1:93696145-93696164 None:intergenic 50.0%
!! AGATGGACACCAGCATTGGT+CGG + chr3_1:93696285-93696304 None:intergenic 50.0%
AGAGAGATGGACACCAGCAT+TGG + chr3_1:93696289-93696308 None:intergenic 50.0%
GTGGAAAGAGTGGAGAGAGA+TGG + chr3_1:93696302-93696321 None:intergenic 50.0%
! CGGATTGATAGGTCCCGTTT+TGG + chr3_1:93696336-93696355 None:intergenic 50.0%
GTGACCATTGCCGGATTGAT+AGG + chr3_1:93696347-93696366 None:intergenic 50.0%
AATACTGCGGTGACCATTGC+CGG + chr3_1:93696356-93696375 None:intergenic 50.0%
TCAGTTAGGAAGGAGCTTGC+AGG - chr3_1:93696404-93696423 Msa0389090:intron 50.0%
CAGTTAGGAAGGAGCTTGCA+GGG - chr3_1:93696405-93696424 Msa0389090:intron 50.0%
GACAGGGATGTGAAGCTGAA+TGG - chr3_1:93696473-93696492 Msa0389090:intron 50.0%
AAGCTGAATGGCTCCATCTG+TGG - chr3_1:93696485-93696504 Msa0389090:intron 50.0%
!! AGGTTTTATCCCGCCACAGA+TGG + chr3_1:93696501-93696520 None:intergenic 50.0%
CCAAAACGGCAAGTTCAGCT+CGG + chr3_1:93696570-93696589 None:intergenic 50.0%
GTGTGTAGACTCTGCATTGG+TGG + chr3_1:93697030-93697049 None:intergenic 50.0%
GGTGTGTGTAGACTCTGCAT+TGG + chr3_1:93697033-93697052 None:intergenic 50.0%
!! CCCCCTGAATTTTTCTGAGG+TGG + chr3_1:93697274-93697293 None:intergenic 50.0%
! CATGTCGGTTACGTCCCTTC+TGG - chr3_1:93695924-93695943 Msa0389090:CDS 55.0%
ACTTCAAGAGCCTCAGCGTC+TGG - chr3_1:93696004-93696023 Msa0389090:intron 55.0%
!! GATGGACACCAGCATTGGTC+GGG + chr3_1:93696284-93696303 None:intergenic 55.0%
GGGACCTATCAATCCGGCAA+TGG - chr3_1:93696340-93696359 Msa0389090:intron 55.0%
CTGAATGGCTCCATCTGTGG+CGG - chr3_1:93696488-93696507 Msa0389090:intron 55.0%
TGAATGGCTCCATCTGTGGC+GGG - chr3_1:93696489-93696508 Msa0389090:intron 55.0%
ACCTTTGAATGCTGCTGGCG+AGG - chr3_1:93696517-93696536 Msa0389090:intron 55.0%
ACCTCGCCAGCAGCATTCAA+AGG + chr3_1:93696521-93696540 None:intergenic 55.0%
TTTGAATGCTGCTGGCGAGG+TGG - chr3_1:93696520-93696539 Msa0389090:intron 55.0%
!! CCGAGCTGAACTTGCCGTTT+TGG - chr3_1:93696567-93696586 Msa0389090:intron 55.0%
ATTGGTCATGCTGGCGGTGC+AGG - chr3_1:93695825-93695844 Msa0389090:CDS 60.0%
ACTTCGTCTGCCAGACGCTG+AGG + chr3_1:93696017-93696036 None:intergenic 60.0%
AGTACGATGGCTACCCCTGC+TGG + chr3_1:93696068-93696087 None:intergenic 60.0%
GGGGATTGCCCGACCAATGC+TGG - chr3_1:93696273-93696292 Msa0389090:intron 65.0%
GGTCATGCTGGCGGTGCAGG+CGG - chr3_1:93695828-93695847 Msa0389090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93694156 93697565 93694156 ID=Msa0389090;Name=Msa0389090
chr3_1 mRNA 93694156 93697565 93694156 ID=Msa0389090-mRNA-1;Parent=Msa0389090;Name=Msa0389090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=463|1|1|1|1|1|2|616|468
chr3_1 exon 93694156 93695967 93694156 ID=Msa0389090-mRNA-1:exon:26573;Parent=Msa0389090-mRNA-1
chr3_1 exon 93696892 93697565 93696892 ID=Msa0389090-mRNA-1:exon:26572;Parent=Msa0389090-mRNA-1
chr3_1 five_prime_UTR 93697103 93697565 93697103 ID=Msa0389090-mRNA-1:five_prime_utr;Parent=Msa0389090-mRNA-1
chr3_1 CDS 93696892 93697102 93696892 ID=Msa0389090-mRNA-1:cds;Parent=Msa0389090-mRNA-1
chr3_1 CDS 93694772 93695967 93694772 ID=Msa0389090-mRNA-1:cds;Parent=Msa0389090-mRNA-1
chr3_1 three_prime_UTR 93694156 93694771 93694156 ID=Msa0389090-mRNA-1:three_prime_utr;Parent=Msa0389090-mRNA-1
Gene Sequence

>Msa0389090

ATGGGATGTTTTGATGAGGTGTGTTACAATGGTGAGCTTGAAAATGGAGTGAGTTTGTTTGGGTGCAGTGAGGTTGAAGATGAGGCTAATACAGTTGCTATTGAAGATGCTGTGAGGATTCTTTTGTTGGGTCTTGGTGAAGATATTAATAGGGAAGGTCTTAGGAAGACACCACATCGTGTTGCAAAGGCTCTTCGTGAAGGAACTAGAGGTTATAGACAAAAAGTGAAGGACATTGTTGAAGGTGCTTTATTTCCTGAAGCTGGCATAGATAATAATAAAATTGGTCATGCTGGCGGTGCAGGCGGACTTGTGATTGTCCGAGACATTGACCTCTATTCCTACTGTGAATCTTGTTTGCTACCTTTCCAAGTCAAATGTCATGTCGGTTACGTCCCTTCTGGCCAAAGAGTTGTTGGATTAAGCAAGCTCTCTCGCGTCGCCGAAGTATTTGCTAAACGACTTCAAGAGCCTCAGCGTCTGGCAGACGAAGTGTGTTCAGCTTTACAACAGGGAATTCAACCAGCAGGGGTAGCCATCGTACTTCAGTGTACACATATTCACTTTCCTGACATAGAAACAATCTTTCTAGAATCAAGCCTAAAAGGTGGGGCGAAGATACATGTTTCGTCAGGTTCCGGCGTCTTTGAAAACAAAAACGCAGACGTATGGGCTGATTTCTTTTATCTTATTAAATCTAGAGGCATTGATATGGAAAATATTCATGCTCGGGGATTGCCCGACCAATGCTGGTGTCCATCTCTCTCCACTCTTTCCACCAAAGTTTCCTCCAAAACGGGACCTATCAATCCGGCAATGGTCACCGCAGTATTTTCAATTCTAAAATCTTTGGGAGAAGATTCAGTTAGGAAGGAGCTTGCAGGGACTCCTAATCGTTTCGTGAAATGGCTGTTGAACTTCCAAAGCATTGACAGGGATGTGAAGCTGAATGGCTCCATCTGTGGCGGGATAAAACCTTTGAATGCTGCTGGCGAGGTGGTAAATAATGATAAACAAATATACACCGAGCTGAACTTGCCGTTTTGGTCACAATGTGAGCATCATATACTTCCATTTCACGGCGTTGTTCACATAGGATATTTCCTTTCAGAAGGATTCAGTCCGATTGGAAAATCACTTTTACAGTCGATAGTGCATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACAAAGCAAATAGCAGAAACCATATCACCACTTTTAGGTGGAAATGTAATAGTAGTTGTAGAGGCAAGTCACACATGCATGATTTCTAGGGGAATTGAAAAGTTTGGAAGCAGTACAGCTACCATTGCTGTGTTAGGATGCTTTTCAACTGACATTGCTTCTAGGACCTTATTCTTGCAAAGTATTGCAAATGCTACATCTTCTGGAGGGTGA
Protein sequence

>Msa0389090

MGCFDEVCYNGELENGVSLFGCSEVEDEANTVAIEDAVRILLLGLGEDINREGLRKTPHRVAKALREGTRGYRQKVKDIVEGALFPEAGIDNNKIGHAGGAGGLVIVRDIDLYSYCESCLLPFQVKCHVGYVPSGQRVVGLSKLSRVAEVFAKRLQEPQRLADEVCSALQQGIQPAGVAIVLQCTHIHFPDIETIFLESSLKGGAKIHVSSGSGVFENKNADVWADFFYLIKSRGIDMENIHARGLPDQCWCPSLSTLSTKVSSKTGPINPAMVTAVFSILKSLGEDSVRKELAGTPNRFVKWLLNFQSIDRDVKLNGSICGGIKPLNAAGEVVNNDKQIYTELNLPFWSQCEHHILPFHGVVHIGYFLSEGFSPIGKSLLQSIVHFYGFKLQVQERLTKQIAETISPLLGGNVIVVVEASHTCMISRGIEKFGSSTATIAVLGCFSTDIASRTLFLQSIANATSSGG*