Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394390 | XP_039687610.1 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394390 | sp|Q501H5|SFH13_ARATH | 61.076 | 632 | 231 | 9 | 1 | 624 | 1 | 625 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394390 | A0A396IIN5 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394390 | Msa0442270 | 0.901708 | 2.037979e-78 | -8.615850e-47 |
| Msa0347670 | Msa0394390 | 0.860749 | 1.662048e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394390 | MtrunA17_Chr3g0080051 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1265 |
| Msa0394390 | MtrunA17_Chr8g0369291 | 65.195 | 589 | 182 | 10 | 40 | 624 | 33 | 602 | 0.0 | 736 |
| Msa0394390 | MtrunA17_Chr1g0155521 | 45.787 | 629 | 312 | 15 | 4 | 624 | 13 | 620 | 5.76e-169 | 495 |
| Msa0394390 | MtrunA17_Chr3g0144911 | 54.369 | 412 | 180 | 4 | 4 | 414 | 13 | 417 | 7.69e-158 | 460 |
| Msa0394390 | MtrunA17_Chr7g0236461 | 43.548 | 620 | 305 | 9 | 1 | 616 | 1 | 579 | 1.53e-157 | 465 |
| Msa0394390 | MtrunA17_Chr4g0035391 | 41.587 | 630 | 332 | 13 | 4 | 624 | 13 | 615 | 2.32e-157 | 465 |
| Msa0394390 | MtrunA17_Chr3g0141821 | 42.905 | 599 | 291 | 11 | 9 | 605 | 7 | 556 | 5.87e-140 | 419 |
| Msa0394390 | MtrunA17_Chr5g0404711 | 57.742 | 310 | 128 | 2 | 34 | 343 | 10 | 316 | 1.10e-131 | 395 |
| Msa0394390 | MtrunA17_Chr3g0144891 | 38.908 | 568 | 291 | 10 | 40 | 605 | 37 | 550 | 2.18e-121 | 371 |
| Msa0394390 | MtrunA17_Chr8g0372651 | 38.929 | 560 | 267 | 12 | 62 | 606 | 39 | 538 | 1.75e-119 | 366 |
| Msa0394390 | MtrunA17_Chr4g0035361 | 39.139 | 511 | 245 | 11 | 103 | 605 | 2 | 454 | 9.46e-106 | 328 |
| Msa0394390 | MtrunA17_Chr5g0399151 | 47.078 | 308 | 158 | 2 | 37 | 344 | 54 | 356 | 8.46e-96 | 301 |
| Msa0394390 | MtrunA17_Chr4g0035381 | 50.558 | 269 | 132 | 1 | 78 | 346 | 60 | 327 | 2.56e-93 | 293 |
| Msa0394390 | MtrunA17_Chr4g0076441 | 27.917 | 240 | 158 | 6 | 97 | 332 | 26 | 254 | 1.07e-16 | 81.6 |
| Msa0394390 | MtrunA17_Chr3g0131581 | 28.400 | 250 | 157 | 8 | 67 | 315 | 36 | 264 | 8.63e-16 | 78.2 |
| Msa0394390 | MtrunA17_Chr3g0102691 | 30.180 | 222 | 135 | 6 | 97 | 310 | 26 | 235 | 2.06e-15 | 78.2 |
| Msa0394390 | MtrunA17_Chr2g0290661 | 28.910 | 211 | 141 | 5 | 102 | 310 | 38 | 241 | 3.63e-15 | 77.0 |
| Msa0394390 | MtrunA17_Chr8g0385681 | 26.210 | 248 | 161 | 8 | 73 | 317 | 21 | 249 | 6.92e-12 | 66.2 |
| Msa0394390 | MtrunA17_Chr4g0004981 | 29.279 | 222 | 129 | 10 | 103 | 313 | 126 | 330 | 9.42e-12 | 67.8 |
| Msa0394390 | MtrunA17_Chr8g0385691 | 26.295 | 251 | 157 | 8 | 73 | 317 | 18 | 246 | 1.53e-11 | 65.1 |
| Msa0394390 | MtrunA17_Chr1g0155071 | 27.016 | 248 | 152 | 10 | 72 | 313 | 15 | 239 | 7.80e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394390 | AT1G55690.2 | 61.076 | 632 | 231 | 9 | 1 | 624 | 1 | 625 | 0.0 | 717 |
| Msa0394390 | AT1G55690.4 | 61.076 | 632 | 231 | 9 | 1 | 624 | 1 | 625 | 0.0 | 717 |
| Msa0394390 | AT1G55690.1 | 61.076 | 632 | 231 | 9 | 1 | 624 | 1 | 625 | 0.0 | 717 |
| Msa0394390 | AT1G55690.5 | 61.076 | 632 | 231 | 9 | 1 | 624 | 1 | 625 | 0.0 | 717 |
| Msa0394390 | AT1G55690.3 | 60.766 | 627 | 232 | 8 | 1 | 620 | 1 | 620 | 0.0 | 710 |
| Msa0394390 | AT5G56160.1 | 49.249 | 599 | 261 | 8 | 15 | 611 | 9 | 566 | 0.0 | 560 |
| Msa0394390 | AT5G56160.3 | 49.249 | 599 | 261 | 8 | 15 | 611 | 9 | 566 | 0.0 | 560 |
| Msa0394390 | AT2G21520.2 | 43.260 | 638 | 287 | 10 | 2 | 605 | 15 | 611 | 5.50e-172 | 504 |
| Msa0394390 | AT2G21520.3 | 43.260 | 638 | 287 | 10 | 2 | 605 | 15 | 611 | 5.50e-172 | 504 |
| Msa0394390 | AT2G21520.1 | 43.239 | 636 | 286 | 10 | 4 | 605 | 13 | 607 | 1.79e-170 | 500 |
| Msa0394390 | AT5G56160.2 | 66.286 | 350 | 114 | 3 | 15 | 363 | 9 | 355 | 2.41e-170 | 494 |
| Msa0394390 | AT4G39170.2 | 43.810 | 630 | 314 | 13 | 4 | 624 | 13 | 611 | 3.28e-169 | 496 |
| Msa0394390 | AT4G39170.1 | 43.492 | 630 | 318 | 12 | 4 | 624 | 13 | 613 | 4.12e-169 | 496 |
| Msa0394390 | AT1G19650.1 | 42.122 | 641 | 320 | 16 | 1 | 624 | 1 | 607 | 1.46e-150 | 448 |
| Msa0394390 | AT1G75370.1 | 41.997 | 631 | 324 | 12 | 4 | 624 | 13 | 611 | 1.49e-143 | 430 |
| Msa0394390 | AT1G75370.2 | 42.271 | 634 | 321 | 13 | 4 | 624 | 13 | 614 | 1.59e-142 | 429 |
| Msa0394390 | AT4G39180.3 | 55.301 | 349 | 152 | 3 | 14 | 362 | 11 | 355 | 4.93e-140 | 419 |
| Msa0394390 | AT4G39180.2 | 55.301 | 349 | 152 | 3 | 14 | 362 | 11 | 355 | 4.93e-140 | 419 |
| Msa0394390 | AT4G39180.1 | 55.301 | 349 | 152 | 3 | 14 | 362 | 11 | 355 | 5.60e-140 | 419 |
| Msa0394390 | AT3G24840.1 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.16e-139 | 417 |
| Msa0394390 | AT3G24840.1 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0394390 | AT3G24840.6 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.16e-139 | 417 |
| Msa0394390 | AT3G24840.6 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0394390 | AT3G24840.4 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.16e-139 | 417 |
| Msa0394390 | AT3G24840.4 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0394390 | AT3G24840.2 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.16e-139 | 417 |
| Msa0394390 | AT3G24840.2 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0394390 | AT3G24840.7 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.79e-139 | 417 |
| Msa0394390 | AT3G24840.7 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 7.03e-12 | 68.9 |
| Msa0394390 | AT3G24840.3 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.79e-139 | 417 |
| Msa0394390 | AT3G24840.3 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 7.03e-12 | 68.9 |
| Msa0394390 | AT3G24840.5 | 58.841 | 328 | 133 | 2 | 20 | 347 | 22 | 347 | 8.79e-139 | 417 |
| Msa0394390 | AT3G24840.5 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 7.03e-12 | 68.9 |
| Msa0394390 | AT1G19650.3 | 51.667 | 420 | 182 | 9 | 1 | 412 | 1 | 407 | 9.89e-139 | 412 |
| Msa0394390 | AT2G21540.6 | 49.626 | 401 | 182 | 5 | 14 | 405 | 11 | 400 | 8.22e-135 | 405 |
| Msa0394390 | AT2G21540.2 | 49.626 | 401 | 182 | 5 | 14 | 405 | 11 | 400 | 8.22e-135 | 405 |
| Msa0394390 | AT2G21540.1 | 49.626 | 401 | 182 | 5 | 14 | 405 | 11 | 400 | 8.22e-135 | 405 |
| Msa0394390 | AT2G21540.4 | 49.626 | 401 | 182 | 5 | 14 | 405 | 11 | 400 | 8.22e-135 | 405 |
| Msa0394390 | AT2G21540.3 | 56.024 | 332 | 141 | 3 | 14 | 345 | 11 | 337 | 9.84e-135 | 405 |
| Msa0394390 | AT2G21540.5 | 56.024 | 332 | 141 | 3 | 14 | 345 | 11 | 337 | 9.84e-135 | 405 |
| Msa0394390 | AT4G34580.2 | 54.354 | 333 | 149 | 3 | 13 | 345 | 1 | 330 | 1.14e-131 | 398 |
| Msa0394390 | AT4G34580.1 | 54.354 | 333 | 149 | 3 | 13 | 345 | 1 | 330 | 1.14e-131 | 398 |
| Msa0394390 | AT1G19650.2 | 41.481 | 540 | 269 | 12 | 99 | 624 | 29 | 535 | 6.60e-129 | 390 |
| Msa0394390 | AT2G18180.2 | 39.753 | 566 | 272 | 14 | 43 | 602 | 24 | 526 | 1.98e-127 | 386 |
| Msa0394390 | AT2G18180.1 | 39.753 | 566 | 272 | 14 | 43 | 602 | 24 | 526 | 3.65e-127 | 386 |
| Msa0394390 | AT4G36490.1 | 35.945 | 587 | 315 | 8 | 25 | 610 | 5 | 531 | 8.76e-127 | 385 |
| Msa0394390 | AT2G16380.2 | 53.191 | 329 | 151 | 3 | 19 | 347 | 7 | 332 | 2.83e-123 | 376 |
| Msa0394390 | AT2G16380.1 | 53.191 | 329 | 151 | 3 | 19 | 347 | 7 | 332 | 2.83e-123 | 376 |
| Msa0394390 | AT2G18180.4 | 39.223 | 515 | 246 | 13 | 102 | 610 | 10 | 463 | 7.66e-117 | 357 |
| Msa0394390 | AT2G18180.3 | 39.223 | 515 | 246 | 13 | 102 | 610 | 10 | 463 | 2.43e-116 | 356 |
| Msa0394390 | AT2G18180.5 | 38.632 | 497 | 238 | 13 | 120 | 610 | 1 | 436 | 9.93e-109 | 335 |
| Msa0394390 | AT2G16380.3 | 58.772 | 228 | 93 | 1 | 120 | 347 | 1 | 227 | 1.12e-98 | 308 |
| Msa0394390 | AT5G47510.2 | 50.769 | 260 | 127 | 1 | 77 | 336 | 26 | 284 | 1.58e-92 | 289 |
| Msa0394390 | AT5G47510.4 | 50.769 | 260 | 127 | 1 | 77 | 336 | 26 | 284 | 5.25e-92 | 289 |
| Msa0394390 | AT5G47510.1 | 50.769 | 260 | 127 | 1 | 77 | 336 | 25 | 283 | 5.25e-92 | 289 |
| Msa0394390 | AT5G47510.3 | 51.542 | 227 | 109 | 1 | 110 | 336 | 2 | 227 | 2.34e-82 | 262 |
| Msa0394390 | AT1G55840.1 | 29.694 | 229 | 146 | 6 | 97 | 321 | 31 | 248 | 2.05e-17 | 84.3 |
| Msa0394390 | AT1G55840.2 | 29.694 | 229 | 146 | 6 | 97 | 321 | 4 | 221 | 2.31e-17 | 83.6 |
| Msa0394390 | AT1G01630.1 | 31.944 | 216 | 115 | 8 | 105 | 313 | 55 | 245 | 1.80e-16 | 80.1 |
| Msa0394390 | AT5G47730.4 | 29.048 | 210 | 140 | 4 | 103 | 310 | 39 | 241 | 5.49e-16 | 80.1 |
| Msa0394390 | AT5G47730.1 | 29.048 | 210 | 140 | 4 | 103 | 310 | 39 | 241 | 5.49e-16 | 80.1 |
| Msa0394390 | AT1G72160.1 | 25.221 | 226 | 145 | 9 | 103 | 317 | 167 | 379 | 5.49e-11 | 65.9 |
Find 152 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTATAAGATTTGAATTT+TGG | 0.180122 | 3_2:-8997672 | Msa0394390:CDS |
| CCTGTATCTTTGCAATAGTT+TGG | 0.232046 | 3_2:+8999030 | None:intergenic |
| CAATTTGCTTAGCATTATTA+AGG | 0.247877 | 3_2:-8997773 | Msa0394390:CDS |
| AATGTAGTAATGATGAAATT+AGG | 0.250418 | 3_2:-9001102 | Msa0394390:CDS |
| TGCCTCGCCTCGGGCTTCCT+TGG | 0.252176 | 3_2:+8996850 | None:intergenic |
| CTGTATCTTTGCAATAGTTT+GGG | 0.262582 | 3_2:+8999031 | None:intergenic |
| GTCAAAATTGTTCTGTTCAT+TGG | 0.274378 | 3_2:+8998513 | None:intergenic |
| ACTAGAGTGACATGAGAATT+TGG | 0.278548 | 3_2:-8996788 | Msa0394390:three_prime_UTR |
| GATTTCCTGATTCAGAAATT+AGG | 0.278825 | 3_2:-9001468 | Msa0394390:five_prime_UTR |
| TTTATCCTAATTTCTGAATC+AGG | 0.287861 | 3_2:+9001463 | None:intergenic |
| TCAATGCTGGTACTGGCTTT+AGG | 0.289975 | 3_2:-8999091 | Msa0394390:CDS |
| GAAGGCAAGTTTAAGTCTTT+TGG | 0.290672 | 3_2:-8998470 | Msa0394390:intron |
| GAGATTGGATGTTGAGTATT+CGG | 0.297804 | 3_2:-9001074 | Msa0394390:CDS |
| GCTTGAAATTAATGATTTAC+TGG | 0.298005 | 3_2:-8997284 | Msa0394390:CDS |
| AAATTAGGATAAACTTTCTT+TGG | 0.301658 | 3_2:-9001453 | Msa0394390:five_prime_UTR |
| AACATTACCTTCATGATATC+AGG | 0.313347 | 3_2:+8998701 | None:intergenic |
| GTCATTGCAAACTAATGATA+TGG | 0.327390 | 3_2:-8998033 | Msa0394390:CDS |
| GCCTCGCCTCGGGCTTCCTT+GGG | 0.328711 | 3_2:+8996851 | None:intergenic |
| ATTCTAAAATCGGAACTCTT+AGG | 0.336366 | 3_2:-9001033 | Msa0394390:CDS |
| GAAATCTCTATATAAATTAC+AGG | 0.365965 | 3_2:-8998904 | Msa0394390:CDS |
| GGCGAGGCATTCAAGTCTAA+TGG | 0.366040 | 3_2:-8996836 | Msa0394390:three_prime_UTR |
| GGAGAAGGAGCAAATGCTTA+TGG | 0.367860 | 3_2:-8997476 | Msa0394390:CDS |
| CTTACGTGGCGAAAGGAGTA+TGG | 0.370156 | 3_2:-9000556 | Msa0394390:CDS |
| CAAGTCTTTGCCGCAATTCA+AGG | 0.372010 | 3_2:+9000882 | None:intergenic |
| AAACTTACTTCTTCACAAAC+TGG | 0.377431 | 3_2:+8998246 | None:intergenic |
| CGGTTTACATTGAGAGGCTT+GGG | 0.379178 | 3_2:-8999758 | Msa0394390:CDS |
| ACATGAACCACCAAGAAAAT+CGG | 0.380730 | 3_2:+8998778 | None:intergenic |
| CACTTAAGAAAAGAGGAAAA+AGG | 0.383154 | 3_2:-9000973 | Msa0394390:CDS |
| CTGGCTTTAGGAAGATGCTT+TGG | 0.389604 | 3_2:-8999079 | Msa0394390:CDS |
| ATGTAGTAATGATGAAATTA+GGG | 0.392654 | 3_2:-9001101 | Msa0394390:CDS |
| ACAAGTGCTGACATCCTTCA+TGG | 0.393015 | 3_2:-8997716 | Msa0394390:CDS |
| TCCTTTAAAAGTCAGATATC+AGG | 0.394555 | 3_2:-8996903 | Msa0394390:three_prime_UTR |
| TGAAATTAGGGAGAGGAGAT+TGG | 0.397972 | 3_2:-9001089 | Msa0394390:CDS |
| CACCAAGAAAATCGGGCAAC+TGG | 0.403587 | 3_2:+8998786 | None:intergenic |
| CTGGTGAAGGTGGATGTCTT+AGG | 0.410160 | 3_2:-8998748 | Msa0394390:CDS |
| CCGGTTTACATTGAGAGGCT+TGG | 0.426846 | 3_2:-8999759 | Msa0394390:CDS |
| AGCGACTCTTCAGCAGAATC+AGG | 0.433420 | 3_2:-8998333 | Msa0394390:CDS |
| AGGCGACAATATTCTAAAAT+CGG | 0.434917 | 3_2:-9001043 | Msa0394390:CDS |
| TTCTCCAAAGGCATGCCATC+GGG | 0.444869 | 3_2:+8997493 | None:intergenic |
| AAAGGGGATCTTTGCCTCCT+AGG | 0.445898 | 3_2:-9000856 | Msa0394390:CDS |
| ACTCATTCACTTAAGAAAAG+AGG | 0.446379 | 3_2:-9000980 | Msa0394390:CDS |
| CCAAACTATTGCAAAGATAC+AGG | 0.446618 | 3_2:-8999030 | Msa0394390:intron |
| GCAAATGCTTATGGAATCCT+TGG | 0.448250 | 3_2:-8997467 | Msa0394390:CDS |
| TTGAGTATTCGGAAGAAGAT+AGG | 0.449049 | 3_2:-9001063 | Msa0394390:CDS |
| CTGTAGTAGCCATTCACATC+TGG | 0.454523 | 3_2:+8998125 | None:intergenic |
| AACAACAATACTGGATGTAC+AGG | 0.455740 | 3_2:-8999598 | Msa0394390:CDS |
| CAAACCCGATGGCATGCCTT+TGG | 0.459457 | 3_2:-8997497 | Msa0394390:CDS |
| GCAATGACTGCTCACGAGTA+AGG | 0.461203 | 3_2:+8998048 | None:intergenic |
| TTCATTTGGATTGAAATGTC+AGG | 0.461414 | 3_2:-9001428 | Msa0394390:intron |
| ACGCGTTCTGTGGAATTTGA+TGG | 0.465779 | 3_2:+8997628 | None:intergenic |
| TACATTGTCAATGCTGGTAC+TGG | 0.471435 | 3_2:-8999098 | Msa0394390:CDS |
| AGACTTGAATGCCTCGCCTC+GGG | 0.474212 | 3_2:+8996841 | None:intergenic |
| CCAAGCCTCTCAATGTAAAC+CGG | 0.476962 | 3_2:+8999759 | None:intergenic |
| AATGTGGTGAAAGGATTTGA+AGG | 0.479009 | 3_2:-9001127 | Msa0394390:intron |
| AGGTTACCATGGAGTTGATA+AGG | 0.479015 | 3_2:-8999790 | Msa0394390:CDS |
| GCGAGGCATTCAAGTCTAAT+GGG | 0.479882 | 3_2:-8996835 | Msa0394390:three_prime_UTR |
| TAGTATTATTACCTCAAGAA+TGG | 0.481409 | 3_2:+9000525 | None:intergenic |
| CAACTCCATGGTAACCTTGA+GGG | 0.488317 | 3_2:+8999796 | None:intergenic |
| ATATGGAGAATATTGCTTGT+AGG | 0.489787 | 3_2:-8998016 | Msa0394390:CDS |
| ATAACTACATCTCCTTTGTC+TGG | 0.496146 | 3_2:+8998281 | None:intergenic |
| TGAGAAAACAATTGAGATGT+GGG | 0.499593 | 3_2:-9000587 | Msa0394390:CDS |
| AATCTGTCTCTTCGCTGCAA+TGG | 0.499997 | 3_2:+8999629 | None:intergenic |
| AGCAAATCTCTTGGCTTCCA+TGG | 0.500376 | 3_2:-8999250 | Msa0394390:CDS |
| CTTCTCCAAAGGCATGCCAT+CGG | 0.500648 | 3_2:+8997492 | None:intergenic |
| GCGGCAAAGACTTGTCGAAA+GGG | 0.501030 | 3_2:-9000873 | Msa0394390:CDS |
| AATCGGAACTCTTAGGAAGA+AGG | 0.505874 | 3_2:-9001026 | Msa0394390:CDS |
| TTATGAAGAAGAAGAGAGAG+AGG | 0.509789 | 3_2:+9002261 | None:intergenic |
| CTACATCTCCTTTGTCTGGT+AGG | 0.510607 | 3_2:+8998285 | None:intergenic |
| TAGACTTGAATGCCTCGCCT+CGG | 0.511560 | 3_2:+8996840 | None:intergenic |
| CGATGGCATGCCTTTGGAGA+AGG | 0.517365 | 3_2:-8997491 | Msa0394390:CDS |
| CATGAACCACCAAGAAAATC+GGG | 0.518291 | 3_2:+8998779 | None:intergenic |
| TCTATGAACTTCTGTGCAGC+AGG | 0.519372 | 3_2:+8999056 | None:intergenic |
| ACGTCTTCAGAGGCTAGAAA+AGG | 0.520954 | 3_2:-8997539 | Msa0394390:CDS |
| GGTTCCACCAGTGGCTATTG+AGG | 0.523124 | 3_2:-9000936 | Msa0394390:CDS |
| TATTATTCTTGCAGCAGAGA+AGG | 0.523932 | 3_2:-8996961 | Msa0394390:intron |
| CTCTGAAGACGTTGTTCACA+CGG | 0.524693 | 3_2:+8997550 | None:intergenic |
| TTTGGAGCAGCTACTAATGA+AGG | 0.528797 | 3_2:-9001508 | Msa0394390:five_prime_UTR |
| CTCTCTCAAACTCTTGTACA+TGG | 0.528841 | 3_2:+8999679 | None:intergenic |
| TCGCACAGTCGAGCGTTGAT+CGG | 0.530295 | 3_2:-8996875 | Msa0394390:three_prime_UTR |
| AACGGACTTTATTCTATCCA+AGG | 0.531191 | 3_2:+8997450 | None:intergenic |
| ATGAAGGATGTCAGCACTTG+TGG | 0.531732 | 3_2:+8997718 | None:intergenic |
| CAAATGTACATTGTCAATGC+TGG | 0.538652 | 3_2:-8999104 | Msa0394390:CDS |
| AATACTGGATGTACAGGGCT+TGG | 0.540642 | 3_2:-8999592 | Msa0394390:intron |
| GTTAATAATGACGCGTTCTG+TGG | 0.541907 | 3_2:+8997618 | None:intergenic |
| TTGAGAAAACAATTGAGATG+TGG | 0.543568 | 3_2:-9000588 | Msa0394390:CDS |
| CGCGTTCTGTGGAATTTGAT+GGG | 0.546574 | 3_2:+8997629 | None:intergenic |
| TTCGCTGCAATGGAACATGC+TGG | 0.547083 | 3_2:+8999639 | None:intergenic |
| TTAGGTCTAACAAGGGTCCA+TGG | 0.550541 | 3_2:-8998730 | Msa0394390:CDS |
| AAAGCTTGTAAAGTCTCAAA+CGG | 0.552509 | 3_2:-9002063 | Msa0394390:intron |
| ATACCCTCTTTGTCTTCTCA+AGG | 0.552784 | 3_2:+8997419 | None:intergenic |
| GCGTACTGCAGCAAATCTCT+TGG | 0.558703 | 3_2:-8999259 | Msa0394390:CDS |
| GATCAACTTACTCGACACTT+CGG | 0.560086 | 3_2:+8997247 | None:intergenic |
| CGCAGCGAGTCTTTCCATGA+AGG | 0.560463 | 3_2:+8997702 | None:intergenic |
| TTTCAAATATCGATCTATTG+TGG | 0.561616 | 3_2:+8999704 | None:intergenic |
| CTAAGACATCCACCTTCACC+AGG | 0.567033 | 3_2:+8998749 | None:intergenic |
| TGTATCTTTGCAATAGTTTG+GGG | 0.567207 | 3_2:+8999032 | None:intergenic |
| GTAGGCCGGTTTACATTGAG+AGG | 0.571661 | 3_2:-8999764 | Msa0394390:CDS |
| TTGATTCAATAGCTGCGGAA+TGG | 0.576539 | 3_2:+8997596 | None:intergenic |
| GGTGGTTCATGTAAATGTCC+TGG | 0.577495 | 3_2:-8998767 | Msa0394390:CDS |
| GTAATGATGAAATTAGGGAG+AGG | 0.577986 | 3_2:-9001096 | Msa0394390:CDS |
| ACCCAAGGAAGCCCGAGGCG+AGG | 0.578073 | 3_2:-8996852 | Msa0394390:three_prime_UTR |
| AGCATTTGCTCCTTCTCCAA+AGG | 0.579422 | 3_2:+8997481 | None:intergenic |
| CTAACATCCTCAATAGCCAC+TGG | 0.581497 | 3_2:+9000929 | None:intergenic |
| AGTTGATAAGGAAGGTAGGC+CGG | 0.589330 | 3_2:-8999778 | Msa0394390:CDS |
| TACCTTCCTTATCAACTCCA+TGG | 0.591048 | 3_2:+8999784 | None:intergenic |
| GTATTGCAGTATTACCCTCA+AGG | 0.591530 | 3_2:-8999810 | Msa0394390:CDS |
| ATGATATCAGGATCATTCCA+TGG | 0.591683 | 3_2:+8998713 | None:intergenic |
| CTTCTCAAGGTCAAACTCAA+CGG | 0.592403 | 3_2:+8997432 | None:intergenic |
| GTTCTGTTCATTGGACGCCC+TGG | 0.594168 | 3_2:+8998522 | None:intergenic |
| GTGATGTGCATCAAGCGACT+TGG | 0.595132 | 3_2:+8999726 | None:intergenic |
| TGCGGCAAAGACTTGTCGAA+AGG | 0.595167 | 3_2:-9000874 | Msa0394390:CDS |
| TGGATGTCTTAGGTCTAACA+AGG | 0.599523 | 3_2:-8998738 | Msa0394390:CDS |
| CTTCAGTGAGTGTAACTGAA+AGG | 0.601782 | 3_2:+8998489 | None:intergenic |
| TGACTATAGGGTTCCACCAG+TGG | 0.601959 | 3_2:-9000945 | Msa0394390:CDS |
| CGTGTGAACAACGTCTTCAG+AGG | 0.603903 | 3_2:-8997549 | Msa0394390:CDS |
| GTCAGGGTACCAGATGTGAA+TGG | 0.604172 | 3_2:-8998134 | Msa0394390:CDS |
| GAATGATCCTGATATCATGA+AGG | 0.604709 | 3_2:-8998708 | Msa0394390:intron |
| TCGAGCGTTGATCGGACCCA+AGG | 0.605088 | 3_2:-8996867 | Msa0394390:three_prime_UTR |
| TACAGGAAGTAATTGACTCT+AGG | 0.605900 | 3_2:-8998887 | Msa0394390:intron |
| GTATGATAATCATCATGCCT+AGG | 0.607916 | 3_2:+9000839 | None:intergenic |
| TGATAATCATCATGCCTAGG+AGG | 0.611478 | 3_2:+9000842 | None:intergenic |
| AGAAGTTGATTCAATAGCTG+CGG | 0.612265 | 3_2:+8997591 | None:intergenic |
| TGTAAATGTCCTGGTGAAGG+TGG | 0.614422 | 3_2:-8998758 | Msa0394390:CDS |
| AGAAATGCTTACGTGGCGAA+AGG | 0.615480 | 3_2:-9000563 | Msa0394390:CDS |
| ATGTGGTGAAAGGATTTGAA+GGG | 0.618345 | 3_2:-9001126 | Msa0394390:intron |
| TGGAACTGATACCATTCTTG+AGG | 0.619938 | 3_2:-9000536 | Msa0394390:intron |
| TACCATGGAGTTGATAAGGA+AGG | 0.620910 | 3_2:-8999786 | Msa0394390:CDS |
| TCAACTCCATGGTAACCTTG+AGG | 0.621566 | 3_2:+8999795 | None:intergenic |
| GGATGTTAGAGATGCACGAG+AGG | 0.621739 | 3_2:-9000915 | Msa0394390:CDS |
| CTTTCAGTTACACTCACTGA+AGG | 0.625497 | 3_2:-8998488 | Msa0394390:CDS |
| AGATAGCTGTTACTATCCTG+AGG | 0.625896 | 3_2:-8999220 | Msa0394390:intron |
| ATGATTTACTGGAGAACATG+CGG | 0.627372 | 3_2:-8997273 | Msa0394390:CDS |
| CGGCAAAGACTTGTCGAAAG+GGG | 0.628651 | 3_2:-9000872 | Msa0394390:CDS |
| TAGCGTTTGAGAATGCTAAG+TGG | 0.630269 | 3_2:-9002124 | Msa0394390:five_prime_UTR |
| GAACTCAATAACAAACCCGA+TGG | 0.631108 | 3_2:-8997508 | Msa0394390:CDS |
| ACATCCTCAATAGCCACTGG+TGG | 0.631828 | 3_2:+9000932 | None:intergenic |
| TATTACCCTCAAGGTTACCA+TGG | 0.632301 | 3_2:-8999801 | Msa0394390:CDS |
| TTGACCTTGAGAAGACAAAG+AGG | 0.633659 | 3_2:-8997423 | Msa0394390:CDS |
| ATGGAGTTGATAAGGAAGGT+AGG | 0.634219 | 3_2:-8999782 | Msa0394390:CDS |
| GCTTGTAGGACAAATTCAGA+AGG | 0.637235 | 3_2:-8998002 | Msa0394390:intron |
| ACTCATCTCCTACCAGACAA+AGG | 0.643406 | 3_2:-8998293 | Msa0394390:CDS |
| TCATGTAAATGTCCTGGTGA+AGG | 0.645326 | 3_2:-8998761 | Msa0394390:CDS |
| TTGCCGCAATTCAAGGACTG+CGG | 0.647201 | 3_2:+9000889 | None:intergenic |
| AGACCGCAGTCCTTGAATTG+CGG | 0.647543 | 3_2:-9000892 | Msa0394390:CDS |
| TGACCTTGAGAAGACAAAGA+GGG | 0.648508 | 3_2:-8997422 | Msa0394390:intron |
| ATGATTATCATACATTGCTG+AGG | 0.651082 | 3_2:-9000829 | Msa0394390:intron |
| ATCGGACCCAAGGAAGCCCG+AGG | 0.651998 | 3_2:-8996857 | Msa0394390:three_prime_UTR |
| TCACAAACTGGTGCTAAACG+AGG | 0.682295 | 3_2:+8998258 | None:intergenic |
| ACAACAATACTGGATGTACA+GGG | 0.693937 | 3_2:-8999597 | Msa0394390:CDS |
| TGTGGGAAGAAATGCTTACG+TGG | 0.704198 | 3_2:-9000570 | Msa0394390:CDS |
| GGATGTCTTAGGTCTAACAA+GGG | 0.722635 | 3_2:-8998737 | Msa0394390:CDS |
| TTAGCTATCAGGTAACGCGG+AGG | 0.734505 | 3_2:-8998566 | Msa0394390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAATTTTATAAAAAAT+TGG | + | chr3_2:8998581-8998600 | None:intergenic | 0.0% |
| !!! | ATTTAAAATATTTATATATA+AGG | - | chr3_2:9001599-9001618 | Msa0394390:intron | 0.0% |
| !! | GTTTATAATGAAAAAAAAAA+AGG | + | chr3_2:8996599-8996618 | None:intergenic | 10.0% |
| !! | TAATAATTTAAAAATGTTGA+AGG | + | chr3_2:8996813-8996832 | None:intergenic | 10.0% |
| !!! | ACACATTTTATTTAATTTTT+CGG | + | chr3_2:8997606-8997625 | None:intergenic | 10.0% |
| !!! | TAAATTTTATAAAAAATTGG+AGG | + | chr3_2:8998578-8998597 | None:intergenic | 10.0% |
| !! | AAAATCAGAAAAAAAAATGA+AGG | + | chr3_2:8998393-8998412 | None:intergenic | 15.0% |
| !! | TATTGTTATAAAATTGTTGA+AGG | - | chr3_2:9000834-9000853 | Msa0394390:CDS | 15.0% |
| !! | AAAGAAAAAAAAAAGTTAGT+GGG | + | chr3_2:9001003-9001022 | None:intergenic | 15.0% |
| !!! | GTATATTTTTTGAGAATTCT+CGG | - | chr3_2:8996933-8996952 | Msa0394390:exon | 20.0% |
| !!! | GCATATTTTTTTCATCATTA+AGG | - | chr3_2:8997004-8997023 | Msa0394390:intron | 20.0% |
| !! | ATTTCTATGTTTGTAGAATT+TGG | - | chr3_2:8997222-8997241 | Msa0394390:intron | 20.0% |
| !! | AAATTAGGATAAACTTTCTT+TGG | - | chr3_2:8997360-8997379 | Msa0394390:intron | 20.0% |
| !! | TTATATGATATCTATCACTT+TGG | - | chr3_2:8997410-8997429 | Msa0394390:intron | 20.0% |
| !!! | ACTGATTTGTATTTAAAATG+TGG | - | chr3_2:8997670-8997689 | Msa0394390:CDS | 20.0% |
| !! | AATGTAGTAATGATGAAATT+AGG | - | chr3_2:8997711-8997730 | Msa0394390:CDS | 20.0% |
| !! | ATGTAGTAATGATGAAATTA+GGG | - | chr3_2:8997712-8997731 | Msa0394390:CDS | 20.0% |
| !! | AAAAAGGAAAATTGACTATA+GGG | - | chr3_2:8997856-8997875 | Msa0394390:intron | 20.0% |
| !!! | GAAATAGTTTGAAATAAATG+AGG | + | chr3_2:8998015-8998034 | None:intergenic | 20.0% |
| !!! | ATTTTATAAAAAATTGGAGG+TGG | + | chr3_2:8998575-8998594 | None:intergenic | 20.0% |
| !! | CTTATGCTATCAATAATTAT+TGG | + | chr3_2:8998859-8998878 | None:intergenic | 20.0% |
| !!! | ATGTTTCATTTTCTTCTAAT+TGG | - | chr3_2:8998933-8998952 | Msa0394390:intron | 20.0% |
| !! | GAAATCTCTATATAAATTAC+AGG | - | chr3_2:8999909-8999928 | Msa0394390:intron | 20.0% |
| !! | GAAAGAAAAAAAAAAGTTAG+TGG | + | chr3_2:9001004-9001023 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTTTTTCTTTCC+AGG | - | chr3_2:9001005-9001024 | Msa0394390:CDS | 20.0% |
| !! | TATTTGTATATGTTAGTCTC+TGG | - | chr3_2:8997079-8997098 | Msa0394390:intron | 25.0% |
| ! | CTTGAATCAGTAATTTATGA+AGG | - | chr3_2:8997166-8997185 | Msa0394390:intron | 25.0% |
| ! | AGAATTTGGAGAATTTATCA+AGG | - | chr3_2:8997236-8997255 | Msa0394390:intron | 25.0% |
| ! | TATTTGTATGTTGCAGAATT+TGG | - | chr3_2:8997287-8997306 | Msa0394390:CDS | 25.0% |
| ! | TTTATCCTAATTTCTGAATC+AGG | + | chr3_2:8997353-8997372 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTGGTTTTCATT+TGG | - | chr3_2:8997371-8997390 | Msa0394390:intron | 25.0% |
| ! | AATAAAATGTGTGTTGTGAT+TGG | - | chr3_2:8997614-8997633 | Msa0394390:CDS | 25.0% |
| !! | TGTATTTAAAATGTGGTGAA+AGG | - | chr3_2:8997677-8997696 | Msa0394390:CDS | 25.0% |
| ! | GAAAAAGGAAAATTGACTAT+AGG | - | chr3_2:8997855-8997874 | Msa0394390:intron | 25.0% |
| ! | TAGTATTATTACCTCAAGAA+TGG | + | chr3_2:8998291-8998310 | None:intergenic | 25.0% |
| ! | TTTAAGTCATAGCCATAAAA+AGG | - | chr3_2:8998312-8998331 | Msa0394390:CDS | 25.0% |
| ! | CAATGCTTATATTTGGTATA+TGG | + | chr3_2:8998608-8998627 | None:intergenic | 25.0% |
| ! | TATAACTCTCTTAAAAGCTT+GGG | + | chr3_2:8998708-8998727 | None:intergenic | 25.0% |
| ! | ATATAACTCTCTTAAAAGCT+TGG | + | chr3_2:8998709-8998728 | None:intergenic | 25.0% |
| ! | GATTATAGTTATAGAGACTT+CGG | + | chr3_2:8998743-8998762 | None:intergenic | 25.0% |
| ! | ATGCTATCAATAATTATTGG+AGG | + | chr3_2:8998856-8998875 | None:intergenic | 25.0% |
| ! | TTCAAATTCAAAATCCTTCA+AGG | + | chr3_2:8998971-8998990 | None:intergenic | 25.0% |
| ! | TTTCAAATATCGATCTATTG+TGG | + | chr3_2:8999112-8999131 | None:intergenic | 25.0% |
| ! | CAAACCTGATATTAGTAATA+AGG | + | chr3_2:8999286-8999305 | None:intergenic | 25.0% |
| ! | AGTAGATTGTTTATGTGTTT+AGG | - | chr3_2:8999358-8999377 | Msa0394390:intron | 25.0% |
| !! | GTTTAGGATTCTATGAAATA+TGG | - | chr3_2:8999374-8999393 | Msa0394390:intron | 25.0% |
| ! | CCTAAAAATCATTCTCTTTA+GGG | - | chr3_2:8999403-8999422 | Msa0394390:intron | 25.0% |
| ! | AGTCAAGAATCTGAAAATTA+GGG | + | chr3_2:8999888-8999907 | None:intergenic | 25.0% |
| ! | GTTAAATAGAAACTAGAATG+CGG | + | chr3_2:8999975-8999994 | None:intergenic | 25.0% |
| ! | ATCAGAATATCTACATTAGT+TGG | + | chr3_2:9000226-9000245 | None:intergenic | 25.0% |
| !!! | ATATTCTGATTTTAGCTATC+AGG | - | chr3_2:9000236-9000255 | Msa0394390:intron | 25.0% |
| !! | TACGAGTGTTTACTATTTTA+TGG | - | chr3_2:9000386-9000405 | Msa0394390:intron | 25.0% |
| !! | AGTGTTTACTATTTTATGGT+AGG | - | chr3_2:9000390-9000409 | Msa0394390:intron | 25.0% |
| ! | CTAATTCTTATCTTAACACA+CGG | - | chr3_2:9000599-9000618 | Msa0394390:CDS | 25.0% |
| !! | CAATTTGCTTAGCATTATTA+AGG | - | chr3_2:9001040-9001059 | Msa0394390:CDS | 25.0% |
| !! | GCAGTATAAGATTTGAATTT+TGG | - | chr3_2:9001141-9001160 | Msa0394390:intron | 25.0% |
| ! | TTTGATTAAGTTTGATCTGA+TGG | - | chr3_2:9001448-9001467 | Msa0394390:five_prime_UTR | 25.0% |
| !!! | AAAATTTGTGTTTTTTCTGC+AGG | - | chr3_2:9001481-9001500 | Msa0394390:five_prime_UTR | 25.0% |
| !!! | CAAAAAAGTTTCTACTTTTG+AGG | + | chr3_2:9001701-9001720 | None:intergenic | 25.0% |
| ! | TATAGGTTTACAAACATATG+CGG | + | chr3_2:9001755-9001774 | None:intergenic | 25.0% |
| AAAGCTTGTAAAGTCTCAAA+CGG | - | chr3_2:8996750-8996769 | Msa0394390:three_prime_UTR | 30.0% | |
| GATGAATCTAACATTTGTGA+AGG | + | chr3_2:8996877-8996896 | None:intergenic | 30.0% | |
| GGAGAATTTATCAAGGAATT+TGG | - | chr3_2:8997243-8997262 | Msa0394390:intron | 30.0% | |
| GATTTCCTGATTCAGAAATT+AGG | - | chr3_2:8997345-8997364 | Msa0394390:intron | 30.0% | |
| TTCATTTGGATTGAAATGTC+AGG | - | chr3_2:8997385-8997404 | Msa0394390:intron | 30.0% | |
| !! | TTTTCGGTTTGTAGACAAAT+TGG | + | chr3_2:8997590-8997609 | None:intergenic | 30.0% |
| !! | AGGCGACAATATTCTAAAAT+CGG | - | chr3_2:8997770-8997789 | Msa0394390:CDS | 30.0% |
| !! | ATTCTAAAATCGGAACTCTT+AGG | - | chr3_2:8997780-8997799 | Msa0394390:CDS | 30.0% |
| ACTCATTCACTTAAGAAAAG+AGG | - | chr3_2:8997833-8997852 | Msa0394390:intron | 30.0% | |
| CACTTAAGAAAAGAGGAAAA+AGG | - | chr3_2:8997840-8997859 | Msa0394390:intron | 30.0% | |
| ATGATTATCATACATTGCTG+AGG | - | chr3_2:8997984-8998003 | Msa0394390:intron | 30.0% | |
| !! | CAAAAGTGCTAATTGAAAAG+CGG | + | chr3_2:8998067-8998086 | None:intergenic | 30.0% |
| !!! | TTAGCACTTTTGCTGTTTAA+TGG | - | chr3_2:8998075-8998094 | Msa0394390:CDS | 30.0% |
| TTGAGAAAACAATTGAGATG+TGG | - | chr3_2:8998225-8998244 | Msa0394390:intron | 30.0% | |
| TGAGAAAACAATTGAGATGT+GGG | - | chr3_2:8998226-8998245 | Msa0394390:intron | 30.0% | |
| ! | AAAGCAAATCTGCCTTTTTA+TGG | + | chr3_2:8998327-8998346 | None:intergenic | 30.0% |
| ! | TAAAAAGGCAGATTTGCTTT+AGG | - | chr3_2:8998327-8998346 | Msa0394390:CDS | 30.0% |
| GCATAGACAATGCTTATATT+TGG | + | chr3_2:8998615-8998634 | None:intergenic | 30.0% | |
| GGATAATTATCTATCCTTGA+AGG | - | chr3_2:8998954-8998973 | Msa0394390:intron | 30.0% | |
| !! | TTTTTCGACAACAACAATAC+TGG | - | chr3_2:8999206-8999225 | Msa0394390:intron | 30.0% |
| AGCACCTTATTACTAATATC+AGG | - | chr3_2:8999279-8999298 | Msa0394390:CDS | 30.0% | |
| CTGTTAATTATTCTCTGTGT+CGG | - | chr3_2:8999310-8999329 | Msa0394390:intron | 30.0% | |
| GCCTAAAAATCATTCTCTTT+AGG | - | chr3_2:8999402-8999421 | Msa0394390:intron | 30.0% | |
| ! | CCCTAAAGAGAATGATTTTT+AGG | + | chr3_2:8999406-8999425 | None:intergenic | 30.0% |
| TAATTGAAATGTGTGATGCA+GGG | - | chr3_2:8999516-8999535 | Msa0394390:intron | 30.0% | |
| CAAAAAAGTTTCTTCGGAAA+CGG | + | chr3_2:8999631-8999650 | None:intergenic | 30.0% | |
| ACGCAACAAAAAAGTTTCTT+CGG | + | chr3_2:8999637-8999656 | None:intergenic | 30.0% | |
| TCATCACATAGAAACGAAAA+GGG | + | chr3_2:8999660-8999679 | None:intergenic | 30.0% | |
| ATCATCACATAGAAACGAAA+AGG | + | chr3_2:8999661-8999680 | None:intergenic | 30.0% | |
| GTAATGTCTGCAAATACAAA+CGG | + | chr3_2:8999687-8999706 | None:intergenic | 30.0% | |
| TGTATCTTTGCAATAGTTTG+GGG | + | chr3_2:8999784-8999803 | None:intergenic | 30.0% | |
| CTGTATCTTTGCAATAGTTT+GGG | + | chr3_2:8999785-8999804 | None:intergenic | 30.0% | |
| GAGTCAAGAATCTGAAAATT+AGG | + | chr3_2:8999889-8999908 | None:intergenic | 30.0% | |
| AACATTACCTTCATGATATC+AGG | + | chr3_2:9000115-9000134 | None:intergenic | 30.0% | |
| !! | CCAGCTTTTGAAAATATGTA+CGG | - | chr3_2:9000169-9000188 | Msa0394390:intron | 30.0% |
| GTCAAAATTGTTCTGTTCAT+TGG | + | chr3_2:9000303-9000322 | None:intergenic | 30.0% | |
| ! | TCTTTTGGTCATGAAAAAGT+TGG | - | chr3_2:9000358-9000377 | Msa0394390:intron | 30.0% |
| ! | CTTTTGGTCATGAAAAAGTT+GGG | - | chr3_2:9000359-9000378 | Msa0394390:intron | 30.0% |
| ! | CAATAAGATTGTCATTTGCA+AGG | + | chr3_2:9000424-9000443 | None:intergenic | 30.0% |
| AAACTTACTTCTTCACAAAC+TGG | + | chr3_2:9000570-9000589 | None:intergenic | 30.0% | |
| GTCATTGCAAACTAATGATA+TGG | - | chr3_2:9000780-9000799 | Msa0394390:intron | 30.0% | |
| ATATGGAGAATATTGCTTGT+AGG | - | chr3_2:9000797-9000816 | Msa0394390:intron | 30.0% | |
| GAAAGGAACGCAAATATAAT+TGG | + | chr3_2:9000866-9000885 | None:intergenic | 30.0% | |
| CTCTATATACGATATGTGAA+AGG | + | chr3_2:9000883-9000902 | None:intergenic | 30.0% | |
| ACATATCCCCTTGTAATATT+TGG | - | chr3_2:9000913-9000932 | Msa0394390:CDS | 30.0% | |
| TCGAAGTCCAAATATTACAA+GGG | + | chr3_2:9000923-9000942 | None:intergenic | 30.0% | |
| TTCGAAGTCCAAATATTACA+AGG | + | chr3_2:9000924-9000943 | None:intergenic | 30.0% | |
| TAATATTTGGACTTCGAAGT+TGG | - | chr3_2:9000926-9000945 | Msa0394390:CDS | 30.0% | |
| AAAAAAAAGTTAGTGGGAAG+TGG | + | chr3_2:9000997-9001016 | None:intergenic | 30.0% | |
| TATAAGGAACATACTTGAAG+AGG | - | chr3_2:9001615-9001634 | Msa0394390:intron | 30.0% | |
| AAGAAGTAAACTTGAAGAGA+AGG | - | chr3_2:9001670-9001689 | Msa0394390:intron | 30.0% | |
| TGCTTGTGTGAACTTTAAAT+TGG | - | chr3_2:9001804-9001823 | Msa0394390:intron | 30.0% | |
| GCTTGTGTGAACTTTAAATT+GGG | - | chr3_2:9001805-9001824 | Msa0394390:intron | 30.0% | |
| ! | TCCTTTAAAAGTCAGATATC+AGG | - | chr3_2:9001910-9001929 | Msa0394390:intron | 30.0% |
| TTATGAAGAAGAAGAGAGAG+AGG | + | chr3_2:8996555-8996574 | None:intergenic | 35.0% | |
| TCTGTAAGACCTAATTCAAC+TGG | - | chr3_2:8997472-8997491 | Msa0394390:CDS | 35.0% | |
| TCAGCATTACCAGTTGAATT+AGG | + | chr3_2:8997484-8997503 | None:intergenic | 35.0% | |
| !! | GTAATTGTGGGTTGAGTTTT+AGG | - | chr3_2:8997555-8997574 | Msa0394390:CDS | 35.0% |
| AATGTGGTGAAAGGATTTGA+AGG | - | chr3_2:8997686-8997705 | Msa0394390:CDS | 35.0% | |
| ATGTGGTGAAAGGATTTGAA+GGG | - | chr3_2:8997687-8997706 | Msa0394390:CDS | 35.0% | |
| GTAATGATGAAATTAGGGAG+AGG | - | chr3_2:8997717-8997736 | Msa0394390:CDS | 35.0% | |
| GAGATTGGATGTTGAGTATT+CGG | - | chr3_2:8997739-8997758 | Msa0394390:CDS | 35.0% | |
| TTGAGTATTCGGAAGAAGAT+AGG | - | chr3_2:8997750-8997769 | Msa0394390:CDS | 35.0% | |
| GTATGATAATCATCATGCCT+AGG | + | chr3_2:8997977-8997996 | None:intergenic | 35.0% | |
| !! | TCTAGCTTTAAGAAACCTAC+CGG | + | chr3_2:8998195-8998214 | None:intergenic | 35.0% |
| GGTGTAACAGAAGGATAATT+AGG | - | chr3_2:8998364-8998383 | Msa0394390:intron | 35.0% | |
| AGCTCATACTTGTACATGAA+TGG | - | chr3_2:8998491-8998510 | Msa0394390:CDS | 35.0% | |
| GCTCATACTTGTACATGAAT+GGG | - | chr3_2:8998492-8998511 | Msa0394390:CDS | 35.0% | |
| TGGGTTGTTGATACAGTATT+AGG | - | chr3_2:8998511-8998530 | Msa0394390:CDS | 35.0% | |
| GGGTTGTTGATACAGTATTA+GGG | - | chr3_2:8998512-8998531 | Msa0394390:CDS | 35.0% | |
| CAAGAGCTATTTATGCTTGA+TGG | + | chr3_2:8998808-8998827 | None:intergenic | 35.0% | |
| TCAAGCATAAATAGCTCTTG+TGG | - | chr3_2:8998808-8998827 | Msa0394390:intron | 35.0% | |
| CAAGCATAAATAGCTCTTGT+GGG | - | chr3_2:8998809-8998828 | Msa0394390:intron | 35.0% | |
| ! | GGATTTTGAATTTGAAGAGC+TGG | - | chr3_2:8998975-8998994 | Msa0394390:intron | 35.0% |
| AACAACAATACTGGATGTAC+AGG | - | chr3_2:8999215-8999234 | Msa0394390:intron | 35.0% | |
| ACAACAATACTGGATGTACA+GGG | - | chr3_2:8999216-8999235 | Msa0394390:intron | 35.0% | |
| GTTTCAACAACTTGCAAACA+AGG | + | chr3_2:8999472-8999491 | None:intergenic | 35.0% | |
| GTAATTGAAATGTGTGATGC+AGG | - | chr3_2:8999515-8999534 | Msa0394390:intron | 35.0% | |
| !!! | ACAGCTATCTATTTTAGCCA+TGG | + | chr3_2:8999583-8999602 | None:intergenic | 35.0% |
| CAAATGTACATTGTCAATGC+TGG | - | chr3_2:8999709-8999728 | Msa0394390:CDS | 35.0% | |
| CCTGTATCTTTGCAATAGTT+TGG | + | chr3_2:8999786-8999805 | None:intergenic | 35.0% | |
| CCAAACTATTGCAAAGATAC+AGG | - | chr3_2:8999783-8999802 | Msa0394390:CDS | 35.0% | |
| TATTGCAAAGATACAGGTGA+AGG | - | chr3_2:8999789-8999808 | Msa0394390:CDS | 35.0% | |
| ! | TACAGGAAGTAATTGACTCT+AGG | - | chr3_2:8999926-8999945 | Msa0394390:intron | 35.0% |
| ACTAGAATGCGGTATAATGA+AGG | + | chr3_2:8999964-8999983 | None:intergenic | 35.0% | |
| ACATGAACCACCAAGAAAAT+CGG | + | chr3_2:9000038-9000057 | None:intergenic | 35.0% | |
| ATGATATCAGGATCATTCCA+TGG | + | chr3_2:9000103-9000122 | None:intergenic | 35.0% | |
| GAATGATCCTGATATCATGA+AGG | - | chr3_2:9000105-9000124 | Msa0394390:intron | 35.0% | |
| ! | CCGTACATATTTTCAAAAGC+TGG | + | chr3_2:9000172-9000191 | None:intergenic | 35.0% |
| TACCTTGTCAAACTAGCATT+TGG | - | chr3_2:9000200-9000219 | Msa0394390:intron | 35.0% | |
| !!! | ATTTTAGCTATCAGGTAACG+CGG | - | chr3_2:9000244-9000263 | Msa0394390:intron | 35.0% |
| ! | GAAGGCAAGTTTAAGTCTTT+TGG | - | chr3_2:9000343-9000362 | Msa0394390:intron | 35.0% |
| ! | TAACTATTTTCTCATCTCCC+AGG | - | chr3_2:9000449-9000468 | Msa0394390:intron | 35.0% |
| ! | AACTATTTTCTCATCTCCCA+GGG | - | chr3_2:9000450-9000469 | Msa0394390:intron | 35.0% |
| ATAACTACATCTCCTTTGTC+TGG | + | chr3_2:9000535-9000554 | None:intergenic | 35.0% | |
| ACAAGGGGATATGTACAATT+TGG | + | chr3_2:9000907-9000926 | None:intergenic | 35.0% | |
| CGAAGTCCAAATATTACAAG+GGG | + | chr3_2:9000922-9000941 | None:intergenic | 35.0% | |
| AGCTTAGCATGAATATTAGC+CGG | + | chr3_2:9000961-9000980 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTTTCCAGGTACTG+CGG | - | chr3_2:9001013-9001032 | Msa0394390:CDS | 35.0% |
| ! | AGAAGTTGATTCAATAGCTG+CGG | + | chr3_2:9001225-9001244 | None:intergenic | 35.0% |
| ! | AACGGACTTTATTCTATCCA+AGG | + | chr3_2:9001366-9001385 | None:intergenic | 35.0% |
| ! | TTAAGTTTGATCTGATGGTG+TGG | - | chr3_2:9001453-9001472 | Msa0394390:five_prime_UTR | 35.0% |
| ! | CTGATGATGTTGCAACTTAT+AGG | + | chr3_2:9001772-9001791 | None:intergenic | 35.0% |
| TATTATTCTTGCAGCAGAGA+AGG | - | chr3_2:9001852-9001871 | Msa0394390:intron | 35.0% | |
| ! | GCCTGATATCTGACTTTTAA+AGG | + | chr3_2:9001914-9001933 | None:intergenic | 35.0% |
| ACTAGAGTGACATGAGAATT+TGG | - | chr3_2:9002025-9002044 | Msa0394390:intron | 35.0% | |
| TAGCGTTTGAGAATGCTAAG+TGG | - | chr3_2:8996689-8996708 | Msa0394390:three_prime_UTR | 40.0% | |
| ! | TTTGGAGCAGCTACTAATGA+AGG | - | chr3_2:8997305-8997324 | Msa0394390:CDS | 40.0% |
| ! | CTGGTAATGCTGATATTGCT+AGG | - | chr3_2:8997491-8997510 | Msa0394390:CDS | 40.0% |
| ACCTCGTAAGTCGTAATTGT+GGG | - | chr3_2:8997543-8997562 | Msa0394390:CDS | 40.0% | |
| ! | TTGGCATGATTTTGTGTGTG+TGG | - | chr3_2:8997633-8997652 | Msa0394390:CDS | 40.0% |
| ! | TGGCATGATTTTGTGTGTGT+GGG | - | chr3_2:8997634-8997653 | Msa0394390:CDS | 40.0% |
| TGAAATTAGGGAGAGGAGAT+TGG | - | chr3_2:8997724-8997743 | Msa0394390:CDS | 40.0% | |
| AATCGGAACTCTTAGGAAGA+AGG | - | chr3_2:8997787-8997806 | Msa0394390:CDS | 40.0% | |
| TGATAATCATCATGCCTAGG+AGG | + | chr3_2:8997974-8997993 | None:intergenic | 40.0% | |
| AATTGAAAAGCGGTTCTGCA+AGG | + | chr3_2:8998057-8998076 | None:intergenic | 40.0% | |
| !! | CTAGCTTTAAGAAACCTACC+GGG | + | chr3_2:8998194-8998213 | None:intergenic | 40.0% |
| TGGAACTGATACCATTCTTG+AGG | - | chr3_2:8998277-8998296 | Msa0394390:CDS | 40.0% | |
| CTTTAGGCCACAGAATCTTT+CGG | - | chr3_2:8998343-8998362 | Msa0394390:CDS | 40.0% | |
| TGTTACACCGAAAGATTCTG+TGG | + | chr3_2:8998353-8998372 | None:intergenic | 40.0% | |
| ! | GAATCTTTCGGTGTAACAGA+AGG | - | chr3_2:8998355-8998374 | Msa0394390:intron | 40.0% |
| ATGTACAAGTATGAGCTGTG+AGG | + | chr3_2:8998488-8998507 | None:intergenic | 40.0% | |
| TGAGTGTATGACTAAGCAAG+TGG | - | chr3_2:8998540-8998559 | Msa0394390:CDS | 40.0% | |
| ! | ACCTCAAGCAACAGTTGTTT+TGG | + | chr3_2:8998644-8998663 | None:intergenic | 40.0% |
| CTTAAAAGCTTGGGCTGTTA+AGG | + | chr3_2:8998699-8998718 | None:intergenic | 40.0% | |
| !! | TGCTTGATGGTGTGCAAAAT+GGG | + | chr3_2:8998795-8998814 | None:intergenic | 40.0% |
| !! | ATGCTTGATGGTGTGCAAAA+TGG | + | chr3_2:8998796-8998815 | None:intergenic | 40.0% |
| GTATTGCAGTATTACCCTCA+AGG | - | chr3_2:8999003-8999022 | Msa0394390:intron | 40.0% | |
| TATTACCCTCAAGGTTACCA+TGG | - | chr3_2:8999012-8999031 | Msa0394390:intron | 40.0% | |
| !! | AGGTTACCATGGAGTTGATA+AGG | - | chr3_2:8999023-8999042 | Msa0394390:intron | 40.0% |
| !! | TACCATGGAGTTGATAAGGA+AGG | - | chr3_2:8999027-8999046 | Msa0394390:intron | 40.0% |
| TACCTTCCTTATCAACTCCA+TGG | + | chr3_2:8999032-8999051 | None:intergenic | 40.0% | |
| !! | ATGGAGTTGATAAGGAAGGT+AGG | - | chr3_2:8999031-8999050 | Msa0394390:CDS | 40.0% |
| CTCTCTCAAACTCTTGTACA+TGG | + | chr3_2:8999137-8999156 | None:intergenic | 40.0% | |
| ! | ATTCTCTTTAGGGACTAGTG+AGG | - | chr3_2:8999413-8999432 | Msa0394390:intron | 40.0% |
| ! | TTCTCTTTAGGGACTAGTGA+GGG | - | chr3_2:8999414-8999433 | Msa0394390:intron | 40.0% |
| AGATAGCTGTTACTATCCTG+AGG | - | chr3_2:8999593-8999612 | Msa0394390:CDS | 40.0% | |
| AAAGTTTCTTCGGAAACGGA+CGG | + | chr3_2:8999627-8999646 | None:intergenic | 40.0% | |
| TACATTGTCAATGCTGGTAC+TGG | - | chr3_2:8999715-8999734 | Msa0394390:CDS | 40.0% | |
| TATAAGATCAGTAACCTCGC+AGG | + | chr3_2:8999858-8999877 | None:intergenic | 40.0% | |
| CATGAACCACCAAGAAAATC+GGG | + | chr3_2:9000037-9000056 | None:intergenic | 40.0% | |
| TCATGTAAATGTCCTGGTGA+AGG | - | chr3_2:9000052-9000071 | Msa0394390:intron | 40.0% | |
| TGGATGTCTTAGGTCTAACA+AGG | - | chr3_2:9000075-9000094 | Msa0394390:intron | 40.0% | |
| GGATGTCTTAGGTCTAACAA+GGG | - | chr3_2:9000076-9000095 | Msa0394390:intron | 40.0% | |
| ! | TTTTGTGAGGCAAATCACCA+GGG | - | chr3_2:9000274-9000293 | Msa0394390:intron | 40.0% |
| CTTCAGTGAGTGTAACTGAA+AGG | + | chr3_2:9000327-9000346 | None:intergenic | 40.0% | |
| CTTTCAGTTACACTCACTGA+AGG | - | chr3_2:9000325-9000344 | Msa0394390:intron | 40.0% | |
| ! | ACTATTTTCTCATCTCCCAG+GGG | - | chr3_2:9000451-9000470 | Msa0394390:intron | 40.0% |
| GCTTGTAGGACAAATTCAGA+AGG | - | chr3_2:9000811-9000830 | Msa0394390:intron | 40.0% | |
| TCGAAGTTGGAAATACTTGC+CGG | - | chr3_2:9000939-9000958 | Msa0394390:CDS | 40.0% | |
| GTTAATAATGACGCGTTCTG+TGG | + | chr3_2:9001198-9001217 | None:intergenic | 40.0% | |
| TTGATTCAATAGCTGCGGAA+TGG | + | chr3_2:9001220-9001239 | None:intergenic | 40.0% | |
| GAACTCAATAACAAACCCGA+TGG | - | chr3_2:9001305-9001324 | Msa0394390:intron | 40.0% | |
| GCAAATGCTTATGGAATCCT+TGG | - | chr3_2:9001346-9001365 | Msa0394390:intron | 40.0% | |
| CTTCTCAAGGTCAAACTCAA+CGG | + | chr3_2:9001384-9001403 | None:intergenic | 40.0% | |
| TTGACCTTGAGAAGACAAAG+AGG | - | chr3_2:9001390-9001409 | Msa0394390:intron | 40.0% | |
| TGACCTTGAGAAGACAAAGA+GGG | - | chr3_2:9001391-9001410 | Msa0394390:intron | 40.0% | |
| ATACCCTCTTTGTCTTCTCA+AGG | + | chr3_2:9001397-9001416 | None:intergenic | 40.0% | |
| GATCAACTTACTCGACACTT+CGG | + | chr3_2:9001569-9001588 | None:intergenic | 40.0% | |
| AATTACGACTTACGAGGTCC+CGG | + | chr3_2:8997541-8997560 | None:intergenic | 45.0% | |
| GACCTCGTAAGTCGTAATTG+TGG | - | chr3_2:8997542-8997561 | Msa0394390:CDS | 45.0% | |
| ACCCACAATTACGACTTACG+AGG | + | chr3_2:8997547-8997566 | None:intergenic | 45.0% | |
| CTAACATCCTCAATAGCCAC+TGG | + | chr3_2:8997887-8997906 | None:intergenic | 45.0% | |
| CAAGTCTTTGCCGCAATTCA+AGG | + | chr3_2:8997934-8997953 | None:intergenic | 45.0% | |
| ! | GCTTGTTGCTCTTTGTTTCC+CGG | - | chr3_2:8998173-8998192 | Msa0394390:intron | 45.0% |
| TGTGGGAAGAAATGCTTACG+TGG | - | chr3_2:8998243-8998262 | Msa0394390:intron | 45.0% | |
| AGAAATGCTTACGTGGCGAA+AGG | - | chr3_2:8998250-8998269 | Msa0394390:intron | 45.0% | |
| TACAAGTATGAGCTGTGAGG+TGG | + | chr3_2:8998485-8998504 | None:intergenic | 45.0% | |
| ! | GCCAAAACAACTGTTGCTTG+AGG | - | chr3_2:8998640-8998659 | Msa0394390:intron | 45.0% |
| AAAAGCTTGGGCTGTTAAGG+TGG | + | chr3_2:8998696-8998715 | None:intergenic | 45.0% | |
| GCATAAATAGCTCTTGTGGG+AGG | - | chr3_2:8998812-8998831 | Msa0394390:intron | 45.0% | |
| TAAATAGCTCTTGTGGGAGG+CGG | - | chr3_2:8998815-8998834 | Msa0394390:intron | 45.0% | |
| CAACTCCATGGTAACCTTGA+GGG | + | chr3_2:8999020-8999039 | None:intergenic | 45.0% | |
| TCAACTCCATGGTAACCTTG+AGG | + | chr3_2:8999021-8999040 | None:intergenic | 45.0% | |
| !! | AGTTGATAAGGAAGGTAGGC+CGG | - | chr3_2:8999035-8999054 | Msa0394390:CDS | 45.0% |
| CCAAGCCTCTCAATGTAAAC+CGG | + | chr3_2:8999057-8999076 | None:intergenic | 45.0% | |
| CGGTTTACATTGAGAGGCTT+GGG | - | chr3_2:8999055-8999074 | Msa0394390:CDS | 45.0% | |
| AATCTGTCTCTTCGCTGCAA+TGG | + | chr3_2:8999187-8999206 | None:intergenic | 45.0% | |
| AATACTGGATGTACAGGGCT+TGG | - | chr3_2:8999221-8999240 | Msa0394390:CDS | 45.0% | |
| ! | TCTCTTTAGGGACTAGTGAG+GGG | - | chr3_2:8999415-8999434 | Msa0394390:intron | 45.0% |
| AGCAAATCTCTTGGCTTCCA+TGG | - | chr3_2:8999563-8999582 | Msa0394390:intron | 45.0% | |
| AAGTTTCTTCGGAAACGGAC+GGG | + | chr3_2:8999626-8999645 | None:intergenic | 45.0% | |
| !! | TCAATGCTGGTACTGGCTTT+AGG | - | chr3_2:8999722-8999741 | Msa0394390:CDS | 45.0% |
| !! | CTGGCTTTAGGAAGATGCTT+TGG | - | chr3_2:8999734-8999753 | Msa0394390:CDS | 45.0% |
| TCTATGAACTTCTGTGCAGC+AGG | + | chr3_2:8999760-8999779 | None:intergenic | 45.0% | |
| GCGGTATAATGAAGGAACAG+AGG | + | chr3_2:8999956-8999975 | None:intergenic | 45.0% | |
| GGTGGTTCATGTAAATGTCC+TGG | - | chr3_2:9000046-9000065 | Msa0394390:intron | 45.0% | |
| TGTAAATGTCCTGGTGAAGG+TGG | - | chr3_2:9000055-9000074 | Msa0394390:intron | 45.0% | |
| TTAGGTCTAACAAGGGTCCA+TGG | - | chr3_2:9000083-9000102 | Msa0394390:intron | 45.0% | |
| TCAAAAGCTGGCGCAAGTAA+GGG | + | chr3_2:9000160-9000179 | None:intergenic | 45.0% | |
| TTCAAAAGCTGGCGCAAGTA+AGG | + | chr3_2:9000161-9000180 | None:intergenic | 45.0% | |
| ! | GGCCAAATGCTAGTTTGACA+AGG | + | chr3_2:9000205-9000224 | None:intergenic | 45.0% |
| ! | CTTTTGTGAGGCAAATCACC+AGG | - | chr3_2:9000273-9000292 | Msa0394390:intron | 45.0% |
| ACTCATCTCCTACCAGACAA+AGG | - | chr3_2:9000520-9000539 | Msa0394390:intron | 45.0% | |
| CTACATCTCCTTTGTCTGGT+AGG | + | chr3_2:9000531-9000550 | None:intergenic | 45.0% | |
| ! | TCACAAACTGGTGCTAAACG+AGG | + | chr3_2:9000558-9000577 | None:intergenic | 45.0% |
| CTGTAGTAGCCATTCACATC+TGG | + | chr3_2:9000691-9000710 | None:intergenic | 45.0% | |
| ATGAAGGATGTCAGCACTTG+TGG | + | chr3_2:9001098-9001117 | None:intergenic | 45.0% | |
| !! | ACAAGTGCTGACATCCTTCA+TGG | - | chr3_2:9001097-9001116 | Msa0394390:CDS | 45.0% |
| CGCGTTCTGTGGAATTTGAT+GGG | + | chr3_2:9001187-9001206 | None:intergenic | 45.0% | |
| ACGCGTTCTGTGGAATTTGA+TGG | + | chr3_2:9001188-9001207 | None:intergenic | 45.0% | |
| ! | CTCTGAAGACGTTGTTCACA+CGG | + | chr3_2:9001266-9001285 | None:intergenic | 45.0% |
| ACGTCTTCAGAGGCTAGAAA+AGG | - | chr3_2:9001274-9001293 | Msa0394390:intron | 45.0% | |
| AGCATTTGCTCCTTCTCCAA+AGG | + | chr3_2:9001335-9001354 | None:intergenic | 45.0% | |
| GGAGAAGGAGCAAATGCTTA+TGG | - | chr3_2:9001337-9001356 | Msa0394390:intron | 45.0% | |
| ! | GCGAGGCATTCAAGTCTAAT+GGG | - | chr3_2:9001978-9001997 | Msa0394390:intron | 45.0% |
| TGACTATAGGGTTCCACCAG+TGG | - | chr3_2:8997868-8997887 | Msa0394390:intron | 50.0% | |
| ACATCCTCAATAGCCACTGG+TGG | + | chr3_2:8997884-8997903 | None:intergenic | 50.0% | |
| GGATGTTAGAGATGCACGAG+AGG | - | chr3_2:8997898-8997917 | Msa0394390:intron | 50.0% | |
| AGACCGCAGTCCTTGAATTG+CGG | - | chr3_2:8997921-8997940 | Msa0394390:intron | 50.0% | |
| TTGCCGCAATTCAAGGACTG+CGG | + | chr3_2:8997927-8997946 | None:intergenic | 50.0% | |
| TGCGGCAAAGACTTGTCGAA+AGG | - | chr3_2:8997939-8997958 | Msa0394390:intron | 50.0% | |
| GCGGCAAAGACTTGTCGAAA+GGG | - | chr3_2:8997940-8997959 | Msa0394390:intron | 50.0% | |
| CGGCAAAGACTTGTCGAAAG+GGG | - | chr3_2:8997941-8997960 | Msa0394390:intron | 50.0% | |
| AAAGGGGATCTTTGCCTCCT+AGG | - | chr3_2:8997957-8997976 | Msa0394390:intron | 50.0% | |
| ! | GTTGCTCTTTGTTTCCCGGT+AGG | - | chr3_2:8998177-8998196 | Msa0394390:intron | 50.0% |
| CTTACGTGGCGAAAGGAGTA+TGG | - | chr3_2:8998257-8998276 | Msa0394390:CDS | 50.0% | |
| AAGTATGAGCTGTGAGGTGG+AGG | + | chr3_2:8998482-8998501 | None:intergenic | 50.0% | |
| CTGTTAAGGTGGAGACTCGT+CGG | + | chr3_2:8998685-8998704 | None:intergenic | 50.0% | |
| ! | GTAGGCCGGTTTACATTGAG+AGG | - | chr3_2:8999049-8999068 | Msa0394390:CDS | 50.0% |
| CCGGTTTACATTGAGAGGCT+TGG | - | chr3_2:8999054-8999073 | Msa0394390:CDS | 50.0% | |
| GTGATGTGCATCAAGCGACT+TGG | + | chr3_2:8999090-8999109 | None:intergenic | 50.0% | |
| TTCGCTGCAATGGAACATGC+TGG | + | chr3_2:8999177-8999196 | None:intergenic | 50.0% | |
| ! | CTCTTTAGGGACTAGTGAGG+GGG | - | chr3_2:8999416-8999435 | Msa0394390:intron | 50.0% |
| GCGTACTGCAGCAAATCTCT+TGG | - | chr3_2:8999554-8999573 | Msa0394390:intron | 50.0% | |
| ACGGACGGGATAAAAACCTC+AGG | + | chr3_2:8999612-8999631 | None:intergenic | 50.0% | |
| TTACATGCTCTTCTCCTGCG+AGG | - | chr3_2:8999841-8999860 | Msa0394390:intron | 50.0% | |
| ! | AGCCAGTTGCCCGATTTTCT+TGG | - | chr3_2:9000025-9000044 | Msa0394390:intron | 50.0% |
| CACCAAGAAAATCGGGCAAC+TGG | + | chr3_2:9000030-9000049 | None:intergenic | 50.0% | |
| ! | CAGTTGCCCGATTTTCTTGG+TGG | - | chr3_2:9000028-9000047 | Msa0394390:intron | 50.0% |
| CTAAGACATCCACCTTCACC+AGG | + | chr3_2:9000067-9000086 | None:intergenic | 50.0% | |
| CTGGTGAAGGTGGATGTCTT+AGG | - | chr3_2:9000065-9000084 | Msa0394390:intron | 50.0% | |
| TTAGCTATCAGGTAACGCGG+AGG | - | chr3_2:9000247-9000266 | Msa0394390:intron | 50.0% | |
| AGCGACTCTTCAGCAGAATC+AGG | - | chr3_2:9000480-9000499 | Msa0394390:intron | 50.0% | |
| ! | CACGGCATGTGCATTTTGTG+TGG | - | chr3_2:9000617-9000636 | Msa0394390:CDS | 50.0% |
| ! | ACCTAACCGCTGTCTTTTGC+AGG | - | chr3_2:9000657-9000676 | Msa0394390:intron | 50.0% |
| ACCTGCAAAAGACAGCGGTT+AGG | + | chr3_2:9000661-9000680 | None:intergenic | 50.0% | |
| ! | GTCAGGGTACCAGATGTGAA+TGG | - | chr3_2:9000679-9000698 | Msa0394390:intron | 50.0% |
| GCAATGACTGCTCACGAGTA+AGG | + | chr3_2:9000768-9000787 | None:intergenic | 50.0% | |
| AAATTGCTGACCGCAGTACC+TGG | + | chr3_2:9001026-9001045 | None:intergenic | 50.0% | |
| CGTGTGAACAACGTCTTCAG+AGG | - | chr3_2:9001264-9001283 | Msa0394390:intron | 50.0% | |
| ! | TTCTCCAAAGGCATGCCATC+GGG | + | chr3_2:9001323-9001342 | None:intergenic | 50.0% |
| ! | CTTCTCCAAAGGCATGCCAT+CGG | + | chr3_2:9001324-9001343 | None:intergenic | 50.0% |
| TAGACTTGAATGCCTCGCCT+CGG | + | chr3_2:9001976-9001995 | None:intergenic | 50.0% | |
| ! | GGCGAGGCATTCAAGTCTAA+TGG | - | chr3_2:9001977-9001996 | Msa0394390:intron | 50.0% |
| GCTAGGCTAGACAACGTCAC+CGG | - | chr3_2:8997508-8997527 | Msa0394390:CDS | 55.0% | |
| CTAGGCTAGACAACGTCACC+GGG | - | chr3_2:8997509-8997528 | Msa0394390:CDS | 55.0% | |
| GGTTCCACCAGTGGCTATTG+AGG | - | chr3_2:8997877-8997896 | Msa0394390:intron | 55.0% | |
| ! | GGACTAGTGAGGGGGTTCTT+TGG | - | chr3_2:8999424-8999443 | Msa0394390:intron | 55.0% |
| ! | ACGCGGAGGCAACTTTTGTG+AGG | - | chr3_2:9000261-9000280 | Msa0394390:intron | 55.0% |
| GTTCTGTTCATTGGACGCCC+TGG | + | chr3_2:9000294-9000313 | None:intergenic | 55.0% | |
| ! | ACCGCTGTCTTTTGCAGGTC+AGG | - | chr3_2:9000662-9000681 | Msa0394390:intron | 55.0% |
| CCCTGACCTGCAAAAGACAG+CGG | + | chr3_2:9000666-9000685 | None:intergenic | 55.0% | |
| ! | CCGCTGTCTTTTGCAGGTCA+GGG | - | chr3_2:9000663-9000682 | Msa0394390:intron | 55.0% |
| CGCAGCGAGTCTTTCCATGA+AGG | + | chr3_2:9001114-9001133 | None:intergenic | 55.0% | |
| CAAACCCGATGGCATGCCTT+TGG | - | chr3_2:9001316-9001335 | Msa0394390:intron | 55.0% | |
| ! | CGATGGCATGCCTTTGGAGA+AGG | - | chr3_2:9001322-9001341 | Msa0394390:intron | 55.0% |
| !! | TCGCACAGTCGAGCGTTGAT+CGG | - | chr3_2:9001938-9001957 | Msa0394390:intron | 55.0% |
| AGACTTGAATGCCTCGCCTC+GGG | + | chr3_2:9001975-9001994 | None:intergenic | 55.0% | |
| CAACGTCACCGGGTTCGATC+CGG | - | chr3_2:8997519-8997538 | Msa0394390:CDS | 60.0% | |
| AACGTCACCGGGTTCGATCC+GGG | - | chr3_2:8997520-8997539 | Msa0394390:CDS | 60.0% | |
| !! | TCGAGCGTTGATCGGACCCA+AGG | - | chr3_2:9001946-9001965 | Msa0394390:intron | 60.0% |
| ACGAGGTCCCGGATCGAACC+CGG | + | chr3_2:8997530-8997549 | None:intergenic | 65.0% | |
| AGAGTCGCTGCATCGCCCCT+GGG | + | chr3_2:9000469-9000488 | None:intergenic | 65.0% | |
| AAGAGTCGCTGCATCGCCCC+TGG | + | chr3_2:9000470-9000489 | None:intergenic | 65.0% | |
| ATCGGACCCAAGGAAGCCCG+AGG | - | chr3_2:9001956-9001975 | Msa0394390:intron | 65.0% | |
| ACCCAAGGAAGCCCGAGGCG+AGG | - | chr3_2:9001961-9001980 | Msa0394390:intron | 70.0% | |
| GCCTCGCCTCGGGCTTCCTT+GGG | + | chr3_2:9001965-9001984 | None:intergenic | 70.0% | |
| TGCCTCGCCTCGGGCTTCCT+TGG | + | chr3_2:9001966-9001985 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8996552 | 9002283 | 8996552 | ID=Msa0394390;Name=Msa0394390 |
| chr3_2 | mRNA | 8996552 | 9002283 | 8996552 | ID=Msa0394390-mRNA-1;Parent=Msa0394390;Name=Msa0394390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=317|0.92|0.93|1|0.92|0.86|15|397|624 |
| chr3_2 | exon | 8996552 | 8996969 | 8996552 | ID=Msa0394390-mRNA-1:exon:2386;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8997258 | 8997332 | 8997258 | ID=Msa0394390-mRNA-1:exon:2385;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8997423 | 8997808 | 8997423 | ID=Msa0394390-mRNA-1:exon:2384;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8998003 | 8998156 | 8998003 | ID=Msa0394390-mRNA-1:exon:2383;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8998254 | 8998364 | 8998254 | ID=Msa0394390-mRNA-1:exon:2382;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8998471 | 8998584 | 8998471 | ID=Msa0394390-mRNA-1:exon:2381;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8998709 | 8998808 | 8998709 | ID=Msa0394390-mRNA-1:exon:2380;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8998888 | 8998937 | 8998888 | ID=Msa0394390-mRNA-1:exon:2379;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8999031 | 8999135 | 8999031 | ID=Msa0394390-mRNA-1:exon:2378;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8999221 | 8999298 | 8999221 | ID=Msa0394390-mRNA-1:exon:2377;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 8999593 | 8999859 | 8999593 | ID=Msa0394390-mRNA-1:exon:2376;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 9000537 | 9000636 | 9000537 | ID=Msa0394390-mRNA-1:exon:2375;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 9000830 | 9001136 | 9000830 | ID=Msa0394390-mRNA-1:exon:2374;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 9001429 | 9001532 | 9001429 | ID=Msa0394390-mRNA-1:exon:2373;Parent=Msa0394390-mRNA-1 |
| chr3_2 | exon | 9002064 | 9002283 | 9002064 | ID=Msa0394390-mRNA-1:exon:2372;Parent=Msa0394390-mRNA-1 |
| chr3_2 | five_prime_UTR | 9002064 | 9002283 | 9002064 | ID=Msa0394390-mRNA-1:five_prime_utr;Parent=Msa0394390-mRNA-1 |
| chr3_2 | five_prime_UTR | 9001436 | 9001532 | 9001436 | ID=Msa0394390-mRNA-1:five_prime_utr;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 9001429 | 9001435 | 9001429 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 9000830 | 9001136 | 9000830 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 9000537 | 9000636 | 9000537 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8999593 | 8999859 | 8999593 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8999221 | 8999298 | 8999221 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8999031 | 8999135 | 8999031 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8998888 | 8998937 | 8998888 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8998709 | 8998808 | 8998709 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8998471 | 8998584 | 8998471 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8998254 | 8998364 | 8998254 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8998003 | 8998156 | 8998003 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8997423 | 8997808 | 8997423 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8997258 | 8997332 | 8997258 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | CDS | 8996949 | 8996969 | 8996949 | ID=Msa0394390-mRNA-1:cds;Parent=Msa0394390-mRNA-1 |
| chr3_2 | three_prime_UTR | 8996552 | 8996948 | 8996552 | ID=Msa0394390-mRNA-1:three_prime_utr;Parent=Msa0394390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
