Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347670 | XP_039687610.1 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347670 | sp|Q501H5|SFH13_ARATH | 60.759 | 632 | 233 | 9 | 1 | 624 | 1 | 625 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347670 | A0A396IIN5 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195710 | Msa0347670 | 0.800424 | 1.450747e-48 | -8.615850e-47 |
| Msa0347670 | Msa0394390 | 0.860749 | 1.662048e-63 | -8.615850e-47 |
| Msa0347670 | Msa0442270 | 0.894063 | 3.505346e-75 | -8.615850e-47 |
| Msa0347670 | Msa0467930 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0347670 | Msa0982240 | 0.823001 | 1.751914e-53 | -8.615850e-47 |
| Msa0347670 | Msa1170800 | 0.825083 | 5.687679e-54 | -8.615850e-47 |
| Msa0347670 | Msa1447150 | 0.824515 | 7.742431e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347670 | MtrunA17_Chr3g0080051 | 96.955 | 624 | 13 | 1 | 1 | 624 | 1 | 618 | 0.0 | 1266 |
| Msa0347670 | MtrunA17_Chr8g0369291 | 65.025 | 589 | 183 | 10 | 40 | 624 | 33 | 602 | 0.0 | 733 |
| Msa0347670 | MtrunA17_Chr1g0155521 | 45.946 | 629 | 311 | 15 | 4 | 624 | 13 | 620 | 9.85e-170 | 497 |
| Msa0347670 | MtrunA17_Chr3g0144911 | 54.369 | 412 | 180 | 4 | 4 | 414 | 13 | 417 | 3.56e-158 | 461 |
| Msa0347670 | MtrunA17_Chr7g0236461 | 43.548 | 620 | 305 | 9 | 1 | 616 | 1 | 579 | 8.69e-158 | 466 |
| Msa0347670 | MtrunA17_Chr4g0035391 | 41.758 | 637 | 321 | 13 | 4 | 624 | 13 | 615 | 9.66e-158 | 466 |
| Msa0347670 | MtrunA17_Chr3g0141821 | 43.072 | 599 | 290 | 11 | 9 | 605 | 7 | 556 | 9.17e-141 | 421 |
| Msa0347670 | MtrunA17_Chr5g0404711 | 57.742 | 310 | 128 | 2 | 34 | 343 | 10 | 316 | 7.57e-132 | 395 |
| Msa0347670 | MtrunA17_Chr3g0144891 | 39.085 | 568 | 290 | 10 | 40 | 605 | 37 | 550 | 3.26e-122 | 374 |
| Msa0347670 | MtrunA17_Chr8g0372651 | 38.929 | 560 | 267 | 12 | 62 | 606 | 39 | 538 | 1.35e-119 | 366 |
| Msa0347670 | MtrunA17_Chr4g0035361 | 39.139 | 511 | 245 | 11 | 103 | 605 | 2 | 454 | 6.57e-106 | 328 |
| Msa0347670 | MtrunA17_Chr5g0399151 | 46.753 | 308 | 159 | 2 | 37 | 344 | 54 | 356 | 1.59e-94 | 298 |
| Msa0347670 | MtrunA17_Chr4g0035381 | 50.558 | 269 | 132 | 1 | 78 | 346 | 60 | 327 | 2.23e-93 | 293 |
| Msa0347670 | MtrunA17_Chr4g0076441 | 27.917 | 240 | 158 | 6 | 97 | 332 | 26 | 254 | 1.13e-16 | 81.6 |
| Msa0347670 | MtrunA17_Chr3g0131581 | 28.800 | 250 | 156 | 8 | 67 | 315 | 36 | 264 | 1.39e-16 | 80.5 |
| Msa0347670 | MtrunA17_Chr3g0102691 | 30.180 | 222 | 135 | 6 | 97 | 310 | 26 | 235 | 1.97e-15 | 78.2 |
| Msa0347670 | MtrunA17_Chr2g0290661 | 28.910 | 211 | 141 | 5 | 102 | 310 | 38 | 241 | 4.57e-15 | 76.6 |
| Msa0347670 | MtrunA17_Chr8g0385681 | 26.613 | 248 | 160 | 8 | 73 | 317 | 21 | 249 | 1.43e-12 | 68.2 |
| Msa0347670 | MtrunA17_Chr8g0385691 | 26.693 | 251 | 156 | 8 | 73 | 317 | 18 | 246 | 3.48e-12 | 67.0 |
| Msa0347670 | MtrunA17_Chr4g0004981 | 30.045 | 223 | 126 | 11 | 103 | 313 | 126 | 330 | 8.62e-12 | 67.8 |
| Msa0347670 | MtrunA17_Chr1g0155071 | 27.016 | 248 | 152 | 10 | 72 | 313 | 15 | 239 | 4.18e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347670 | AT1G55690.2 | 60.759 | 632 | 233 | 9 | 1 | 624 | 1 | 625 | 0.0 | 714 |
| Msa0347670 | AT1G55690.4 | 60.759 | 632 | 233 | 9 | 1 | 624 | 1 | 625 | 0.0 | 714 |
| Msa0347670 | AT1G55690.1 | 60.759 | 632 | 233 | 9 | 1 | 624 | 1 | 625 | 0.0 | 714 |
| Msa0347670 | AT1G55690.5 | 60.759 | 632 | 233 | 9 | 1 | 624 | 1 | 625 | 0.0 | 714 |
| Msa0347670 | AT1G55690.3 | 60.447 | 627 | 234 | 8 | 1 | 620 | 1 | 620 | 0.0 | 706 |
| Msa0347670 | AT5G56160.1 | 49.082 | 599 | 262 | 8 | 15 | 611 | 9 | 566 | 0.0 | 556 |
| Msa0347670 | AT5G56160.3 | 49.082 | 599 | 262 | 8 | 15 | 611 | 9 | 566 | 0.0 | 556 |
| Msa0347670 | AT2G21520.2 | 43.260 | 638 | 287 | 10 | 2 | 605 | 15 | 611 | 2.63e-172 | 505 |
| Msa0347670 | AT2G21520.3 | 43.260 | 638 | 287 | 10 | 2 | 605 | 15 | 611 | 2.63e-172 | 505 |
| Msa0347670 | AT2G21520.1 | 43.239 | 636 | 286 | 10 | 4 | 605 | 13 | 607 | 8.64e-171 | 501 |
| Msa0347670 | AT4G39170.2 | 43.810 | 630 | 314 | 13 | 4 | 624 | 13 | 611 | 1.87e-169 | 496 |
| Msa0347670 | AT4G39170.1 | 43.492 | 630 | 318 | 12 | 4 | 624 | 13 | 613 | 3.54e-169 | 496 |
| Msa0347670 | AT5G56160.2 | 66.000 | 350 | 115 | 3 | 15 | 363 | 9 | 355 | 3.73e-169 | 491 |
| Msa0347670 | AT1G19650.1 | 41.550 | 645 | 318 | 16 | 1 | 624 | 1 | 607 | 1.30e-149 | 446 |
| Msa0347670 | AT1G75370.1 | 41.838 | 631 | 325 | 12 | 4 | 624 | 13 | 611 | 3.82e-142 | 427 |
| Msa0347670 | AT1G75370.2 | 42.114 | 634 | 322 | 13 | 4 | 624 | 13 | 614 | 4.10e-141 | 426 |
| Msa0347670 | AT4G39180.3 | 55.587 | 349 | 151 | 3 | 14 | 362 | 11 | 355 | 1.01e-140 | 421 |
| Msa0347670 | AT4G39180.2 | 55.587 | 349 | 151 | 3 | 14 | 362 | 11 | 355 | 1.01e-140 | 421 |
| Msa0347670 | AT4G39180.1 | 55.587 | 349 | 151 | 3 | 14 | 362 | 11 | 355 | 1.20e-140 | 421 |
| Msa0347670 | AT1G19650.3 | 51.429 | 420 | 183 | 9 | 1 | 412 | 1 | 407 | 1.18e-137 | 409 |
| Msa0347670 | AT3G24840.7 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.26e-137 | 414 |
| Msa0347670 | AT3G24840.7 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 6.79e-12 | 68.9 |
| Msa0347670 | AT3G24840.3 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.26e-137 | 414 |
| Msa0347670 | AT3G24840.3 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 6.79e-12 | 68.9 |
| Msa0347670 | AT3G24840.5 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.26e-137 | 414 |
| Msa0347670 | AT3G24840.5 | 46.575 | 73 | 39 | 0 | 542 | 614 | 487 | 559 | 6.79e-12 | 68.9 |
| Msa0347670 | AT3G24840.1 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.30e-137 | 414 |
| Msa0347670 | AT3G24840.1 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0347670 | AT3G24840.6 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.30e-137 | 414 |
| Msa0347670 | AT3G24840.6 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0347670 | AT3G24840.4 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.30e-137 | 414 |
| Msa0347670 | AT3G24840.4 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0347670 | AT3G24840.2 | 58.537 | 328 | 134 | 2 | 20 | 347 | 22 | 347 | 1.30e-137 | 414 |
| Msa0347670 | AT3G24840.2 | 46.575 | 73 | 39 | 0 | 542 | 614 | 486 | 558 | 6.83e-12 | 68.9 |
| Msa0347670 | AT2G21540.6 | 49.875 | 401 | 181 | 5 | 14 | 405 | 11 | 400 | 1.43e-135 | 407 |
| Msa0347670 | AT2G21540.2 | 49.875 | 401 | 181 | 5 | 14 | 405 | 11 | 400 | 1.43e-135 | 407 |
| Msa0347670 | AT2G21540.1 | 49.875 | 401 | 181 | 5 | 14 | 405 | 11 | 400 | 1.43e-135 | 407 |
| Msa0347670 | AT2G21540.4 | 49.875 | 401 | 181 | 5 | 14 | 405 | 11 | 400 | 1.43e-135 | 407 |
| Msa0347670 | AT2G21540.3 | 55.786 | 337 | 144 | 3 | 14 | 350 | 11 | 342 | 2.47e-135 | 407 |
| Msa0347670 | AT2G21540.5 | 55.786 | 337 | 144 | 3 | 14 | 350 | 11 | 342 | 2.47e-135 | 407 |
| Msa0347670 | AT4G34580.2 | 54.655 | 333 | 148 | 3 | 13 | 345 | 1 | 330 | 2.17e-132 | 399 |
| Msa0347670 | AT4G34580.1 | 54.655 | 333 | 148 | 3 | 13 | 345 | 1 | 330 | 2.17e-132 | 399 |
| Msa0347670 | AT1G19650.2 | 41.405 | 541 | 268 | 11 | 99 | 624 | 29 | 535 | 3.21e-129 | 391 |
| Msa0347670 | AT2G18180.2 | 39.753 | 566 | 272 | 14 | 43 | 602 | 24 | 526 | 1.00e-127 | 387 |
| Msa0347670 | AT2G18180.1 | 39.184 | 564 | 278 | 12 | 43 | 602 | 24 | 526 | 1.87e-127 | 387 |
| Msa0347670 | AT4G36490.1 | 35.945 | 587 | 315 | 8 | 25 | 610 | 5 | 531 | 8.48e-127 | 385 |
| Msa0347670 | AT2G16380.2 | 52.888 | 329 | 152 | 3 | 19 | 347 | 7 | 332 | 5.68e-122 | 372 |
| Msa0347670 | AT2G16380.1 | 52.888 | 329 | 152 | 3 | 19 | 347 | 7 | 332 | 5.68e-122 | 372 |
| Msa0347670 | AT2G18180.4 | 39.223 | 515 | 246 | 13 | 102 | 610 | 10 | 463 | 8.71e-117 | 357 |
| Msa0347670 | AT2G18180.3 | 39.223 | 515 | 246 | 13 | 102 | 610 | 10 | 463 | 2.12e-116 | 356 |
| Msa0347670 | AT2G18180.5 | 38.632 | 497 | 238 | 13 | 120 | 610 | 1 | 436 | 7.59e-109 | 335 |
| Msa0347670 | AT2G16380.3 | 58.772 | 228 | 93 | 1 | 120 | 347 | 1 | 227 | 9.63e-99 | 309 |
| Msa0347670 | AT5G47510.2 | 50.769 | 260 | 127 | 1 | 77 | 336 | 26 | 284 | 8.51e-93 | 290 |
| Msa0347670 | AT5G47510.1 | 50.769 | 260 | 127 | 1 | 77 | 336 | 25 | 283 | 3.01e-92 | 290 |
| Msa0347670 | AT5G47510.4 | 50.769 | 260 | 127 | 1 | 77 | 336 | 26 | 284 | 3.35e-92 | 290 |
| Msa0347670 | AT5G47510.3 | 51.542 | 227 | 109 | 1 | 110 | 336 | 2 | 227 | 2.24e-82 | 262 |
| Msa0347670 | AT1G55840.1 | 29.528 | 254 | 159 | 7 | 77 | 321 | 6 | 248 | 1.14e-17 | 85.1 |
| Msa0347670 | AT1G55840.2 | 29.694 | 229 | 146 | 6 | 97 | 321 | 4 | 221 | 2.47e-17 | 83.6 |
| Msa0347670 | AT1G01630.1 | 30.400 | 250 | 141 | 9 | 71 | 313 | 22 | 245 | 8.10e-17 | 81.3 |
| Msa0347670 | AT5G47730.4 | 29.048 | 210 | 140 | 4 | 103 | 310 | 39 | 241 | 5.75e-16 | 80.1 |
| Msa0347670 | AT5G47730.1 | 29.048 | 210 | 140 | 4 | 103 | 310 | 39 | 241 | 5.75e-16 | 80.1 |
| Msa0347670 | AT1G72160.1 | 25.103 | 243 | 156 | 10 | 88 | 317 | 150 | 379 | 5.83e-11 | 65.9 |
Find 152 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCATAAGATTTGAATTT+TGG | 0.114121 | 3_1:-8860446 | Msa0347670:CDS |
| CCTGTATCTTTGCAATAGTT+TGG | 0.232046 | 3_1:+8861806 | None:intergenic |
| CAATTTGCTTAGCATTATTA+AGG | 0.247877 | 3_1:-8860547 | Msa0347670:CDS |
| AATGTAGTAATGATGAAATT+AGG | 0.250418 | 3_1:-8863882 | Msa0347670:CDS |
| TGCCTCGCCTCGGGCTTCCT+TGG | 0.252176 | 3_1:+8859624 | None:intergenic |
| AAAGGGGATCTTTGCCTTCT+AGG | 0.258656 | 3_1:-8863636 | Msa0347670:CDS |
| CTGTATCTTTGCAATAGTTT+GGG | 0.262582 | 3_1:+8861807 | None:intergenic |
| GTCAAAATTGTTCTGTTCAT+TGG | 0.274378 | 3_1:+8861289 | None:intergenic |
| TGTCAAGTTTAAGTTTATAA+TGG | 0.276295 | 3_1:+8865006 | None:intergenic |
| ACTAGAGTGACATGAGAATT+TGG | 0.278548 | 3_1:-8859562 | Msa0347670:three_prime_UTR |
| GATTTCCTGATTCAGAAATT+AGG | 0.278825 | 3_1:-8864248 | Msa0347670:five_prime_UTR |
| TTTATCCTAATTTCTGAATC+AGG | 0.287861 | 3_1:+8864243 | None:intergenic |
| TCAATGCTGGTACTGGCTTT+AGG | 0.289975 | 3_1:-8861867 | Msa0347670:CDS |
| GAAGGCAAGTTTAAGTCTTT+TGG | 0.290672 | 3_1:-8861246 | Msa0347670:intron |
| GAGATTGGATGTTGAGTATT+CGG | 0.297804 | 3_1:-8863854 | Msa0347670:CDS |
| GCTTGAAATTAATGATTTAC+TGG | 0.298005 | 3_1:-8860058 | Msa0347670:CDS |
| AAATTAGGATAAACTTTCTT+TGG | 0.301658 | 3_1:-8864233 | Msa0347670:five_prime_UTR |
| ATCCCCTTTCGACAAGTCTT+TGG | 0.312939 | 3_1:+8863650 | None:intergenic |
| AACATTACCTTCATGATATC+AGG | 0.313347 | 3_1:+8861477 | None:intergenic |
| GTCATTGCAAACTAATGATA+TGG | 0.327390 | 3_1:-8860809 | Msa0347670:CDS |
| GCCTCGCCTCGGGCTTCCTT+GGG | 0.328711 | 3_1:+8859625 | None:intergenic |
| ATTCTAAAATCGGAACTCTT+AGG | 0.336366 | 3_1:-8863813 | Msa0347670:CDS |
| GAAATCTCTATATAAATTAC+AGG | 0.365965 | 3_1:-8861680 | Msa0347670:CDS |
| GGCGAGGCATTCAAGTCTAA+TGG | 0.366040 | 3_1:-8859610 | Msa0347670:three_prime_UTR |
| GGAGAAGGAGCAAATGCTTA+TGG | 0.367860 | 3_1:-8860250 | Msa0347670:CDS |
| CTTACGTGGCGAAAGGAGTA+TGG | 0.370156 | 3_1:-8863334 | Msa0347670:CDS |
| AAACTTACTTCTTCACAAAC+TGG | 0.377431 | 3_1:+8861022 | None:intergenic |
| CGGTTTACATTGAGAGGCTT+GGG | 0.379178 | 3_1:-8862534 | Msa0347670:CDS |
| ACATGAACCACCAAGAAAAT+CGG | 0.380730 | 3_1:+8861554 | None:intergenic |
| CACTTAAGAAAAGAGGAAAA+AGG | 0.383154 | 3_1:-8863753 | Msa0347670:CDS |
| CTGGCTTTAGGAAGATGCTT+TGG | 0.389604 | 3_1:-8861855 | Msa0347670:CDS |
| ATGTAGTAATGATGAAATTA+GGG | 0.392654 | 3_1:-8863881 | Msa0347670:CDS |
| ACAAGTGCTGACATCCTTCA+TGG | 0.393015 | 3_1:-8860490 | Msa0347670:CDS |
| TCCTTTAAAAGTCAGATATC+AGG | 0.394555 | 3_1:-8859677 | Msa0347670:three_prime_UTR |
| TGAAATTAGGGAGAGGAGAT+TGG | 0.397972 | 3_1:-8863869 | Msa0347670:CDS |
| CACCAAGAAAATCGGGCAAC+TGG | 0.403587 | 3_1:+8861562 | None:intergenic |
| CAAGTCTTTGGCGCAATTCA+AGG | 0.405426 | 3_1:+8863662 | None:intergenic |
| CTGGTGAAGGTGGATGTCTT+AGG | 0.410160 | 3_1:-8861524 | Msa0347670:CDS |
| CTGTAGTAGCCATTCAAATC+TGG | 0.420209 | 3_1:+8860901 | None:intergenic |
| TGATAATCATCATGCCTAGA+AGG | 0.422308 | 3_1:+8863622 | None:intergenic |
| TTCTCCAAAGGCATGCCATC+AGG | 0.423462 | 3_1:+8860267 | None:intergenic |
| CCGGTTTACATTGAGAGGCT+TGG | 0.426846 | 3_1:-8862535 | Msa0347670:CDS |
| TAGCGTTTGAGAATGCTAAA+TGG | 0.427722 | 3_1:-8864922 | Msa0347670:five_prime_UTR |
| AGCGACTCTTCAGCAGAATC+AGG | 0.433420 | 3_1:-8861109 | Msa0347670:CDS |
| AGGCGACAATATTCTAAAAT+CGG | 0.434917 | 3_1:-8863823 | Msa0347670:CDS |
| ACTCATTCACTTAAGAAAAG+AGG | 0.446379 | 3_1:-8863760 | Msa0347670:CDS |
| CCAAACTATTGCAAAGATAC+AGG | 0.446618 | 3_1:-8861806 | Msa0347670:intron |
| GCAAATGCTTATGGAATCCT+TGG | 0.448250 | 3_1:-8860241 | Msa0347670:CDS |
| TTGAGTATTCGGAAGAAGAT+AGG | 0.449049 | 3_1:-8863843 | Msa0347670:CDS |
| AACAACAATACTGGATGTAC+AGG | 0.455740 | 3_1:-8862374 | Msa0347670:CDS |
| CAAACCTGATGGCATGCCTT+TGG | 0.456974 | 3_1:-8860271 | Msa0347670:CDS |
| AGAATAGAGATATAATAGAT+AGG | 0.458312 | 3_1:-8859346 | Msa0347670:three_prime_UTR |
| GCAATGACTGCTCACGAGTA+AGG | 0.461203 | 3_1:+8860824 | None:intergenic |
| TTCATTTGGATTGAAATGTC+AGG | 0.461414 | 3_1:-8864208 | Msa0347670:intron |
| ACGCGTTCTGTGGAATTTGA+TGG | 0.465779 | 3_1:+8860402 | None:intergenic |
| TACATTGTCAATGCTGGTAC+TGG | 0.471435 | 3_1:-8861874 | Msa0347670:CDS |
| AGACTTGAATGCCTCGCCTC+GGG | 0.474212 | 3_1:+8859615 | None:intergenic |
| CCAAGCCTCTCAATGTAAAC+CGG | 0.476962 | 3_1:+8862535 | None:intergenic |
| AATGTGGTGAAAGGATTTGA+AGG | 0.479009 | 3_1:-8863907 | Msa0347670:intron |
| AGGTTACCATGGAGTTGATA+AGG | 0.479015 | 3_1:-8862566 | Msa0347670:CDS |
| GCGAGGCATTCAAGTCTAAT+GGG | 0.479882 | 3_1:-8859609 | Msa0347670:three_prime_UTR |
| TAGTATTATTACCTCAAGAA+TGG | 0.481409 | 3_1:+8863303 | None:intergenic |
| CAACTCCATGGTAACCTTGA+GGG | 0.488317 | 3_1:+8862572 | None:intergenic |
| ATATGGAGAATATTGCTTGT+AGG | 0.489787 | 3_1:-8860792 | Msa0347670:CDS |
| GCGCCAAAGACTTGTCGAAA+GGG | 0.494515 | 3_1:-8863653 | Msa0347670:CDS |
| ATAACTACATCTCCTTTGTC+TGG | 0.496146 | 3_1:+8861057 | None:intergenic |
| TGAGAAAACAATTGAGATGT+GGG | 0.499593 | 3_1:-8863365 | Msa0347670:CDS |
| AATCTGTCTCTTCGCTGCAA+TGG | 0.499997 | 3_1:+8862405 | None:intergenic |
| AGCAAATCTCTTGGCTTCCA+TGG | 0.500376 | 3_1:-8862026 | Msa0347670:CDS |
| AATCGGAACTCTTAGGAAGA+AGG | 0.505874 | 3_1:-8863806 | Msa0347670:CDS |
| TTATGAAGAAGAAGAGAGAG+AGG | 0.509789 | 3_1:+8865068 | None:intergenic |
| CTCTGAAGACGTTGTTCACA+AGG | 0.509978 | 3_1:+8860324 | None:intergenic |
| CTACATCTCCTTTGTCTGGT+AGG | 0.510607 | 3_1:+8861061 | None:intergenic |
| TAGACTTGAATGCCTCGCCT+CGG | 0.511560 | 3_1:+8859614 | None:intergenic |
| CATGAACCACCAAGAAAATC+GGG | 0.518291 | 3_1:+8861555 | None:intergenic |
| TCTATGAACTTCTGTGCAGC+AGG | 0.519372 | 3_1:+8861832 | None:intergenic |
| ACGTCTTCAGAGGCTAGAAA+AGG | 0.520954 | 3_1:-8860313 | Msa0347670:CDS |
| GGTTCCACCAGTGGCTATTG+AGG | 0.523124 | 3_1:-8863716 | Msa0347670:CDS |
| TATTATTCTTGCAGCAGAGA+AGG | 0.523932 | 3_1:-8859735 | Msa0347670:intron |
| TTTGGAGCAGCTACTAATGA+AGG | 0.528797 | 3_1:-8864288 | Msa0347670:five_prime_UTR |
| CTCTCTCAAACTCTTGTACA+TGG | 0.528841 | 3_1:+8862455 | None:intergenic |
| TCGCACAGTCGAGCGTTGAT+CGG | 0.530295 | 3_1:-8859649 | Msa0347670:three_prime_UTR |
| ATGAAGGATGTCAGCACTTG+TGG | 0.531732 | 3_1:+8860492 | None:intergenic |
| CAAATGTACATTGTCAATGC+TGG | 0.538652 | 3_1:-8861880 | Msa0347670:CDS |
| GACGGACTTTATTCTATCCA+AGG | 0.539207 | 3_1:+8860224 | None:intergenic |
| AATACTGGATGTACAGGGCT+TGG | 0.540642 | 3_1:-8862368 | Msa0347670:intron |
| GTTAATAATGACGCGTTCTG+TGG | 0.541907 | 3_1:+8860392 | None:intergenic |
| TTGAGAAAACAATTGAGATG+TGG | 0.543568 | 3_1:-8863366 | Msa0347670:CDS |
| TGATGGCATGCCTTTGGAGA+AGG | 0.546033 | 3_1:-8860265 | Msa0347670:CDS |
| CGCGTTCTGTGGAATTTGAT+GGG | 0.546574 | 3_1:+8860403 | None:intergenic |
| TTCGCTGCAATGGAACATGC+TGG | 0.547083 | 3_1:+8862415 | None:intergenic |
| TTAGGTCTAACAAGGGTCCA+TGG | 0.550541 | 3_1:-8861506 | Msa0347670:CDS |
| AAAGCTTGTAAAGTCTCAAA+CGG | 0.552509 | 3_1:-8864861 | Msa0347670:intron |
| ATACCCTCTTTGTCTTCTCA+AGG | 0.552784 | 3_1:+8860193 | None:intergenic |
| GCGTACTGCAGCAAATCTCT+TGG | 0.558703 | 3_1:-8862035 | Msa0347670:CDS |
| GATCAACTTACTCGACACTT+CGG | 0.560086 | 3_1:+8860021 | None:intergenic |
| CGCAGCGAGTCTTTCCATGA+AGG | 0.560463 | 3_1:+8860476 | None:intergenic |
| TTTCAAATATCGATCTATTG+TGG | 0.561616 | 3_1:+8862480 | None:intergenic |
| CTAAGACATCCACCTTCACC+AGG | 0.567033 | 3_1:+8861525 | None:intergenic |
| TGTATCTTTGCAATAGTTTG+GGG | 0.567207 | 3_1:+8861808 | None:intergenic |
| GAACTCAATAACAAACCTGA+TGG | 0.570432 | 3_1:-8860282 | Msa0347670:CDS |
| GTAGGCCGGTTTACATTGAG+AGG | 0.571661 | 3_1:-8862540 | Msa0347670:CDS |
| TTGATTCAATAGCTGCGGAA+TGG | 0.576539 | 3_1:+8860370 | None:intergenic |
| GGTGGTTCATGTAAATGTCC+TGG | 0.577495 | 3_1:-8861543 | Msa0347670:CDS |
| GTAATGATGAAATTAGGGAG+AGG | 0.577986 | 3_1:-8863876 | Msa0347670:CDS |
| ACCCAAGGAAGCCCGAGGCG+AGG | 0.578073 | 3_1:-8859626 | Msa0347670:three_prime_UTR |
| AGCATTTGCTCCTTCTCCAA+AGG | 0.579422 | 3_1:+8860255 | None:intergenic |
| CTTGTGAACAACGTCTTCAG+AGG | 0.580555 | 3_1:-8860323 | Msa0347670:CDS |
| CTAACATCCTCAATAGCCAC+TGG | 0.581497 | 3_1:+8863709 | None:intergenic |
| TGCGCCAAAGACTTGTCGAA+AGG | 0.582230 | 3_1:-8863654 | Msa0347670:CDS |
| AGTTGATAAGGAAGGTAGGC+CGG | 0.589330 | 3_1:-8862554 | Msa0347670:CDS |
| TACCTTCCTTATCAACTCCA+TGG | 0.591048 | 3_1:+8862560 | None:intergenic |
| GTATTGCAGTATTACCCTCA+AGG | 0.591530 | 3_1:-8862586 | Msa0347670:CDS |
| ATGATATCAGGATCATTCCA+TGG | 0.591683 | 3_1:+8861489 | None:intergenic |
| GTTCTGTTCATTGGACGCCC+TGG | 0.594168 | 3_1:+8861298 | None:intergenic |
| GTGATGTGCATCAAGCGACT+TGG | 0.595132 | 3_1:+8862502 | None:intergenic |
| CGCCAAAGACTTGTCGAAAG+GGG | 0.597902 | 3_1:-8863652 | Msa0347670:CDS |
| TGGATGTCTTAGGTCTAACA+AGG | 0.599523 | 3_1:-8861514 | Msa0347670:CDS |
| GTCAGGGTACCAGATTTGAA+TGG | 0.599669 | 3_1:-8860910 | Msa0347670:CDS |
| CTTCTCAAGGTCAAACTCGA+CGG | 0.600054 | 3_1:+8860206 | None:intergenic |
| CTTCAGTGAGTGTAACTGAA+AGG | 0.601782 | 3_1:+8861265 | None:intergenic |
| TGACTATAGGGTTCCACCAG+TGG | 0.601959 | 3_1:-8863725 | Msa0347670:CDS |
| GAATGATCCTGATATCATGA+AGG | 0.604709 | 3_1:-8861484 | Msa0347670:intron |
| TCGAGCGTTGATCGGACCCA+AGG | 0.605088 | 3_1:-8859641 | Msa0347670:three_prime_UTR |
| TACAGGAAGTAATTGACTCT+AGG | 0.605900 | 3_1:-8861663 | Msa0347670:intron |
| AGAAGTTGATTCAATAGCTG+CGG | 0.612265 | 3_1:+8860365 | None:intergenic |
| TGTAAATGTCCTGGTGAAGG+TGG | 0.614422 | 3_1:-8861534 | Msa0347670:CDS |
| AGAAATGCTTACGTGGCGAA+AGG | 0.615480 | 3_1:-8863341 | Msa0347670:CDS |
| ATGTGGTGAAAGGATTTGAA+GGG | 0.618345 | 3_1:-8863906 | Msa0347670:intron |
| TGGAACTGATACCATTCTTG+AGG | 0.619938 | 3_1:-8863314 | Msa0347670:intron |
| TACCATGGAGTTGATAAGGA+AGG | 0.620910 | 3_1:-8862562 | Msa0347670:CDS |
| TCAACTCCATGGTAACCTTG+AGG | 0.621566 | 3_1:+8862571 | None:intergenic |
| GGATGTTAGAGATGCACGAG+AGG | 0.621739 | 3_1:-8863695 | Msa0347670:CDS |
| CTTTCAGTTACACTCACTGA+AGG | 0.625497 | 3_1:-8861264 | Msa0347670:CDS |
| AGATAGCTGTTACTATCCTG+AGG | 0.625896 | 3_1:-8861996 | Msa0347670:intron |
| ATGATTTACTGGAGAACATG+CGG | 0.627372 | 3_1:-8860047 | Msa0347670:CDS |
| ACATCCTCAATAGCCACTGG+TGG | 0.631828 | 3_1:+8863712 | None:intergenic |
| TATTACCCTCAAGGTTACCA+TGG | 0.632301 | 3_1:-8862577 | Msa0347670:CDS |
| TTGACCTTGAGAAGACAAAG+AGG | 0.633659 | 3_1:-8860197 | Msa0347670:CDS |
| ATGGAGTTGATAAGGAAGGT+AGG | 0.634219 | 3_1:-8862558 | Msa0347670:CDS |
| GCTTGTAGGACAAATTCAGA+AGG | 0.637235 | 3_1:-8860778 | Msa0347670:intron |
| ACTCATCTCCTACCAGACAA+AGG | 0.643406 | 3_1:-8861069 | Msa0347670:CDS |
| TCATGTAAATGTCCTGGTGA+AGG | 0.645326 | 3_1:-8861537 | Msa0347670:CDS |
| TGACCTTGAGAAGACAAAGA+GGG | 0.648508 | 3_1:-8860196 | Msa0347670:intron |
| ATGATTATCATACATTGCTG+AGG | 0.651082 | 3_1:-8863609 | Msa0347670:intron |
| ATCGGACCCAAGGAAGCCCG+AGG | 0.651998 | 3_1:-8859631 | Msa0347670:three_prime_UTR |
| TTGGCGCAATTCAAGGACTG+CGG | 0.653716 | 3_1:+8863669 | None:intergenic |
| TCACAAACTGGTGCTAAACG+AGG | 0.682295 | 3_1:+8861034 | None:intergenic |
| ACAACAATACTGGATGTACA+GGG | 0.693937 | 3_1:-8862373 | Msa0347670:CDS |
| TGTGGGAAGAAATGCTTACG+TGG | 0.704198 | 3_1:-8863348 | Msa0347670:CDS |
| GGATGTCTTAGGTCTAACAA+GGG | 0.722635 | 3_1:-8861513 | Msa0347670:CDS |
| TTAGCTATCAGGTAACGCGG+AGG | 0.734505 | 3_1:-8861342 | Msa0347670:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTATAAAAAAAT+TGG | + | chr3_1:8861387-8861406 | None:intergenic | 0.0% |
| !!! | ATTTAAAATATTTATATATA+AGG | - | chr3_1:8864408-8864427 | Msa0347670:intron | 0.0% |
| !! | AATGGAAAAAAAAAAAAAAA+AGG | + | chr3_1:8859375-8859394 | None:intergenic | 10.0% |
| !!! | ACACATTTTATTTAATTTTT+CGG | + | chr3_1:8860409-8860428 | None:intergenic | 10.0% |
| !!! | AAATTTTATAAAAAAATTGG+AGG | + | chr3_1:8861384-8861403 | None:intergenic | 10.0% |
| !! | TAATAATTTGAAAATGTTGA+AGG | + | chr3_1:8859595-8859614 | None:intergenic | 15.0% |
| !! | AAATAGTTTGAAAAAAAATG+AGG | + | chr3_1:8860818-8860837 | None:intergenic | 15.0% |
| !! | AAATCAGAAAAAAAAAATGA+AGG | + | chr3_1:8861198-8861217 | None:intergenic | 15.0% |
| !! | TATTGTTATAAAATTGTTGA+AGG | - | chr3_1:8863641-8863660 | Msa0347670:CDS | 15.0% |
| !!! | TGTCAAGTTTAAGTTTATAA+TGG | + | chr3_1:8859393-8859412 | None:intergenic | 20.0% |
| !!! | GCATATTTTTTTCATCATTA+AGG | - | chr3_1:8859807-8859826 | Msa0347670:intron | 20.0% |
| !! | ATTTCTATGTTTGTAGAATT+TGG | - | chr3_1:8860025-8860044 | Msa0347670:intron | 20.0% |
| !! | AAATTAGGATAAACTTTCTT+TGG | - | chr3_1:8860163-8860182 | Msa0347670:intron | 20.0% |
| !! | TTATATGATATCTATCACTT+TGG | - | chr3_1:8860213-8860232 | Msa0347670:CDS | 20.0% |
| !!! | ACTGATTTGTATTTAAAATG+TGG | - | chr3_1:8860473-8860492 | Msa0347670:CDS | 20.0% |
| !! | AATGTAGTAATGATGAAATT+AGG | - | chr3_1:8860514-8860533 | Msa0347670:CDS | 20.0% |
| !! | ATGTAGTAATGATGAAATTA+GGG | - | chr3_1:8860515-8860534 | Msa0347670:CDS | 20.0% |
| !! | AAAAAGGAAAATTGACTATA+GGG | - | chr3_1:8860659-8860678 | Msa0347670:intron | 20.0% |
| !!! | TGTCATAAATAAAAAGTGTT+AGG | - | chr3_1:8860929-8860948 | Msa0347670:intron | 20.0% |
| !!! | TTTTATAAAAAAATTGGAGG+TGG | + | chr3_1:8861381-8861400 | None:intergenic | 20.0% |
| !! | CTTATGCTATCAATAATTAT+TGG | + | chr3_1:8861666-8861685 | None:intergenic | 20.0% |
| !!! | ATGTTTCATTTTCTTCTAAT+TGG | - | chr3_1:8861740-8861759 | Msa0347670:intron | 20.0% |
| !! | GAAATCTCTATATAAATTAC+AGG | - | chr3_1:8862716-8862735 | Msa0347670:intron | 20.0% |
| !! | AGGAAAAAAAAAAAGTTAGT+GGG | + | chr3_1:8863810-8863829 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAAAAGTTAG+TGG | + | chr3_1:8863811-8863830 | None:intergenic | 20.0% |
| !! | AGAATAGAGATATAATAGAT+AGG | - | chr3_1:8865050-8865069 | Msa0347670:five_prime_UTR | 20.0% |
| ! | GATAAATCTAACATTTGTGA+AGG | + | chr3_1:8859677-8859696 | None:intergenic | 25.0% |
| !! | TATTTGTATATGTTAGTCTC+TGG | - | chr3_1:8859882-8859901 | Msa0347670:intron | 25.0% |
| ! | CTTGAATCAGTAATTTATGA+AGG | - | chr3_1:8859969-8859988 | Msa0347670:intron | 25.0% |
| ! | AGAATTTGGAGAATTTATCA+AGG | - | chr3_1:8860039-8860058 | Msa0347670:CDS | 25.0% |
| ! | TATTTGTATGTTGCAGAATT+TGG | - | chr3_1:8860090-8860109 | Msa0347670:intron | 25.0% |
| ! | TTTATCCTAATTTCTGAATC+AGG | + | chr3_1:8860156-8860175 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTGGTTTTCATT+TGG | - | chr3_1:8860174-8860193 | Msa0347670:intron | 25.0% |
| ! | AATAAAATGTGTGTTGTGAT+TGG | - | chr3_1:8860417-8860436 | Msa0347670:CDS | 25.0% |
| !! | TGTATTTAAAATGTGGTGAA+AGG | - | chr3_1:8860480-8860499 | Msa0347670:CDS | 25.0% |
| ! | GAAAAAGGAAAATTGACTAT+AGG | - | chr3_1:8860658-8860677 | Msa0347670:intron | 25.0% |
| !!! | ATTAGCACTTTTGTTGTTTA+AGG | - | chr3_1:8860879-8860898 | Msa0347670:CDS | 25.0% |
| !!! | TTAGCACTTTTGTTGTTTAA+GGG | - | chr3_1:8860880-8860899 | Msa0347670:CDS | 25.0% |
| ! | TAGTATTATTACCTCAAGAA+TGG | + | chr3_1:8861096-8861115 | None:intergenic | 25.0% |
| ! | TTTAAGTCATAGCCATAAAA+AGG | - | chr3_1:8861117-8861136 | Msa0347670:CDS | 25.0% |
| ! | TATAACTCTCTTATAAGCTT+GGG | + | chr3_1:8861515-8861534 | None:intergenic | 25.0% |
| ! | ATATAACTCTCTTATAAGCT+TGG | + | chr3_1:8861516-8861535 | None:intergenic | 25.0% |
| ! | GATTATAGTTATAGAGACTT+TGG | + | chr3_1:8861550-8861569 | None:intergenic | 25.0% |
| ! | ATGCTATCAATAATTATTGG+AGG | + | chr3_1:8861663-8861682 | None:intergenic | 25.0% |
| ! | TTCAAATTCAAAATCCTTCA+AGG | + | chr3_1:8861778-8861797 | None:intergenic | 25.0% |
| ! | TTTCAAATATCGATCTATTG+TGG | + | chr3_1:8861919-8861938 | None:intergenic | 25.0% |
| ! | CAAACCTGATATTAGTAATA+AGG | + | chr3_1:8862093-8862112 | None:intergenic | 25.0% |
| ! | AGTAGATTGTTTATGTGTTT+AGG | - | chr3_1:8862165-8862184 | Msa0347670:intron | 25.0% |
| !! | GTTTAGGATTCTATGAAATA+TGG | - | chr3_1:8862181-8862200 | Msa0347670:intron | 25.0% |
| ! | CCTAAAAATCAATCTCTTTA+GGG | - | chr3_1:8862210-8862229 | Msa0347670:intron | 25.0% |
| !! | CAAAAAAGTTTCTTTGGAAA+CGG | + | chr3_1:8862438-8862457 | None:intergenic | 25.0% |
| ! | AGTCAAGAATCTGAAAATTA+GGG | + | chr3_1:8862695-8862714 | None:intergenic | 25.0% |
| ! | GTTAAATAGAAACTAGAATG+CGG | + | chr3_1:8862782-8862801 | None:intergenic | 25.0% |
| ! | ATCAGAATATCTACATTAGT+TGG | + | chr3_1:8863033-8863052 | None:intergenic | 25.0% |
| !!! | ATATTCTGATTTTAGCTATC+AGG | - | chr3_1:8863043-8863062 | Msa0347670:intron | 25.0% |
| !! | TACGAGTGTTTACTATTTTA+TGG | - | chr3_1:8863193-8863212 | Msa0347670:intron | 25.0% |
| !! | AGTGTTTACTATTTTATGGT+AGG | - | chr3_1:8863197-8863216 | Msa0347670:intron | 25.0% |
| ! | CTAATTCTTATCTTAACACA+CGG | - | chr3_1:8863406-8863425 | Msa0347670:intron | 25.0% |
| !!! | ACTTTTTTTTTTTCCTTTCC+AGG | - | chr3_1:8863814-8863833 | Msa0347670:CDS | 25.0% |
| !! | CAATTTGCTTAGCATTATTA+AGG | - | chr3_1:8863849-8863868 | Msa0347670:CDS | 25.0% |
| ! | TTTGATTAAGTTTGATCTGA+TGG | - | chr3_1:8864257-8864276 | Msa0347670:five_prime_UTR | 25.0% |
| !!! | AAAATTTGTGTTTTTTCTGC+AGG | - | chr3_1:8864290-8864309 | Msa0347670:five_prime_UTR | 25.0% |
| ! | GCTTGAAATTAATGATTTAC+TGG | - | chr3_1:8864338-8864357 | Msa0347670:intron | 25.0% |
| !!! | CAAAAAAGTTTCTACTTTTG+AGG | + | chr3_1:8864510-8864529 | None:intergenic | 25.0% |
| ! | TATAGGTTTACAAACATATG+CGG | + | chr3_1:8864564-8864583 | None:intergenic | 25.0% |
| AAAGCTTGTAAAGTCTCAAA+CGG | - | chr3_1:8859535-8859554 | Msa0347670:three_prime_UTR | 30.0% | |
| GGAGAATTTATCAAGGAATT+TGG | - | chr3_1:8860046-8860065 | Msa0347670:CDS | 30.0% | |
| GATTTCCTGATTCAGAAATT+AGG | - | chr3_1:8860148-8860167 | Msa0347670:intron | 30.0% | |
| TTCATTTGGATTGAAATGTC+AGG | - | chr3_1:8860188-8860207 | Msa0347670:intron | 30.0% | |
| !! | TTTTCGGTTTGTAGACAAAT+TGG | + | chr3_1:8860393-8860412 | None:intergenic | 30.0% |
| !! | AGGCGACAATATTCTAAAAT+CGG | - | chr3_1:8860573-8860592 | Msa0347670:intron | 30.0% |
| !! | ATTCTAAAATCGGAACTCTT+AGG | - | chr3_1:8860583-8860602 | Msa0347670:intron | 30.0% |
| ACTCATTCACTTAAGAAAAG+AGG | - | chr3_1:8860636-8860655 | Msa0347670:intron | 30.0% | |
| CACTTAAGAAAAGAGGAAAA+AGG | - | chr3_1:8860643-8860662 | Msa0347670:intron | 30.0% | |
| ATGATTATCATACATTGCTG+AGG | - | chr3_1:8860787-8860806 | Msa0347670:CDS | 30.0% | |
| !! | GATTTTTAACTAAGCTACCT+TGG | - | chr3_1:8860841-8860860 | Msa0347670:CDS | 30.0% |
| TTGAGAAAACAATTGAGATG+TGG | - | chr3_1:8861030-8861049 | Msa0347670:CDS | 30.0% | |
| TGAGAAAACAATTGAGATGT+GGG | - | chr3_1:8861031-8861050 | Msa0347670:CDS | 30.0% | |
| ! | AAAGCAAATCTGCCTTTTTA+TGG | + | chr3_1:8861132-8861151 | None:intergenic | 30.0% |
| ! | TAAAAAGGCAGATTTGCTTT+AGG | - | chr3_1:8861132-8861151 | Msa0347670:intron | 30.0% |
| CAATGCTTATATTTGGCATA+TGG | + | chr3_1:8861415-8861434 | None:intergenic | 30.0% | |
| GCATAGACAATGCTTATATT+TGG | + | chr3_1:8861422-8861441 | None:intergenic | 30.0% | |
| GGATAATTATCTATCCTTGA+AGG | - | chr3_1:8861761-8861780 | Msa0347670:intron | 30.0% | |
| !! | TTTTTCGACAACAACAATAC+TGG | - | chr3_1:8862013-8862032 | Msa0347670:CDS | 30.0% |
| AGCACCTTATTACTAATATC+AGG | - | chr3_1:8862086-8862105 | Msa0347670:intron | 30.0% | |
| CTGTTAATTATTCTCTGTGT+CGG | - | chr3_1:8862117-8862136 | Msa0347670:intron | 30.0% | |
| GCCTAAAAATCAATCTCTTT+AGG | - | chr3_1:8862209-8862228 | Msa0347670:intron | 30.0% | |
| !! | CCCTAAAGAGATTGATTTTT+AGG | + | chr3_1:8862213-8862232 | None:intergenic | 30.0% |
| TAATTGAAATGTGTGATGCA+GGG | - | chr3_1:8862323-8862342 | Msa0347670:intron | 30.0% | |
| ACGCAACAAAAAAGTTTCTT+TGG | + | chr3_1:8862444-8862463 | None:intergenic | 30.0% | |
| TCATCACATAGAAACGAAAA+GGG | + | chr3_1:8862467-8862486 | None:intergenic | 30.0% | |
| ATCATCACATAGAAACGAAA+AGG | + | chr3_1:8862468-8862487 | None:intergenic | 30.0% | |
| GTAATGTCTGCAAATACAAA+CGG | + | chr3_1:8862494-8862513 | None:intergenic | 30.0% | |
| TGTATCTTTGCAATAGTTTG+GGG | + | chr3_1:8862591-8862610 | None:intergenic | 30.0% | |
| CTGTATCTTTGCAATAGTTT+GGG | + | chr3_1:8862592-8862611 | None:intergenic | 30.0% | |
| GAGTCAAGAATCTGAAAATT+AGG | + | chr3_1:8862696-8862715 | None:intergenic | 30.0% | |
| AACATTACCTTCATGATATC+AGG | + | chr3_1:8862922-8862941 | None:intergenic | 30.0% | |
| ! | CCATACATATTTTCAAAAGC+TGG | + | chr3_1:8862979-8862998 | None:intergenic | 30.0% |
| !! | CCAGCTTTTGAAAATATGTA+TGG | - | chr3_1:8862976-8862995 | Msa0347670:intron | 30.0% |
| GTCAAAATTGTTCTGTTCAT+TGG | + | chr3_1:8863110-8863129 | None:intergenic | 30.0% | |
| ! | TCTTTTGGTCATGAAAAAGT+TGG | - | chr3_1:8863165-8863184 | Msa0347670:intron | 30.0% |
| ! | CTTTTGGTCATGAAAAAGTT+GGG | - | chr3_1:8863166-8863185 | Msa0347670:intron | 30.0% |
| ! | CAATAAGATTGTCATTTGCA+AGG | + | chr3_1:8863231-8863250 | None:intergenic | 30.0% |
| AAACTTACTTCTTCACAAAC+TGG | + | chr3_1:8863377-8863396 | None:intergenic | 30.0% | |
| GTCATTGCAAACTAATGATA+TGG | - | chr3_1:8863587-8863606 | Msa0347670:intron | 30.0% | |
| ATATGGAGAATATTGCTTGT+AGG | - | chr3_1:8863604-8863623 | Msa0347670:intron | 30.0% | |
| GAAAGGAACGCAAATATAAT+TGG | + | chr3_1:8863673-8863692 | None:intergenic | 30.0% | |
| CTCTATATACGATATGTGAA+AGG | + | chr3_1:8863690-8863709 | None:intergenic | 30.0% | |
| ACATATCCCCTTGTAATATT+TGG | - | chr3_1:8863720-8863739 | Msa0347670:CDS | 30.0% | |
| TCGAAGTCCAAATATTACAA+GGG | + | chr3_1:8863730-8863749 | None:intergenic | 30.0% | |
| TTCGAAGTCCAAATATTACA+AGG | + | chr3_1:8863731-8863750 | None:intergenic | 30.0% | |
| TAATATTTGGACTTCGAAGT+TGG | - | chr3_1:8863733-8863752 | Msa0347670:CDS | 30.0% | |
| AAAAAAAAGTTAGTGGGAAG+TGG | + | chr3_1:8863804-8863823 | None:intergenic | 30.0% | |
| ! | GCAGCATAAGATTTGAATTT+TGG | - | chr3_1:8863950-8863969 | Msa0347670:intron | 30.0% |
| TATAAGGAACATACTTGAAG+AGG | - | chr3_1:8864424-8864443 | Msa0347670:intron | 30.0% | |
| AAGAAGTAAACTTGAAGAGA+AGG | - | chr3_1:8864479-8864498 | Msa0347670:intron | 30.0% | |
| ! | TCCTTTAAAAGTCAGATATC+AGG | - | chr3_1:8864719-8864738 | Msa0347670:intron | 30.0% |
| TTATGAAGAAGAAGAGAGAG+AGG | + | chr3_1:8859331-8859350 | None:intergenic | 35.0% | |
| TAGCGTTTGAGAATGCTAAA+TGG | - | chr3_1:8859474-8859493 | Msa0347670:three_prime_UTR | 35.0% | |
| !! | GTAATTGTGGGTTGAGTTTT+AGG | - | chr3_1:8860358-8860377 | Msa0347670:CDS | 35.0% |
| AATGTGGTGAAAGGATTTGA+AGG | - | chr3_1:8860489-8860508 | Msa0347670:CDS | 35.0% | |
| ATGTGGTGAAAGGATTTGAA+GGG | - | chr3_1:8860490-8860509 | Msa0347670:CDS | 35.0% | |
| GTAATGATGAAATTAGGGAG+AGG | - | chr3_1:8860520-8860539 | Msa0347670:CDS | 35.0% | |
| GAGATTGGATGTTGAGTATT+CGG | - | chr3_1:8860542-8860561 | Msa0347670:CDS | 35.0% | |
| TTGAGTATTCGGAAGAAGAT+AGG | - | chr3_1:8860553-8860572 | Msa0347670:CDS | 35.0% | |
| TGATAATCATCATGCCTAGA+AGG | + | chr3_1:8860777-8860796 | None:intergenic | 35.0% | |
| !!! | TACCTTGGAGAACTGTTTTT+TGG | - | chr3_1:8860856-8860875 | Msa0347670:CDS | 35.0% |
| ATCCAAAAAACAGTTCTCCA+AGG | + | chr3_1:8860861-8860880 | None:intergenic | 35.0% | |
| TCTTGTTGATCTGTATTTCC+CGG | - | chr3_1:8860978-8860997 | Msa0347670:intron | 35.0% | |
| !! | TCTAGCTTTAAGAAACCTAC+CGG | + | chr3_1:8861000-8861019 | None:intergenic | 35.0% |
| GGTGTAACAGAAGGATAATT+AGG | - | chr3_1:8861169-8861188 | Msa0347670:intron | 35.0% | |
| AGCTCATACTTGTACATGAA+TGG | - | chr3_1:8861297-8861316 | Msa0347670:CDS | 35.0% | |
| GCTCATACTTGTACATGAAT+GGG | - | chr3_1:8861298-8861317 | Msa0347670:CDS | 35.0% | |
| TGGGTTGTTGATACAGTATT+AGG | - | chr3_1:8861317-8861336 | Msa0347670:CDS | 35.0% | |
| GGGTTGTTGATACAGTATTA+GGG | - | chr3_1:8861318-8861337 | Msa0347670:CDS | 35.0% | |
| CAAGAGCTATTTATGCTTGA+TGG | + | chr3_1:8861615-8861634 | None:intergenic | 35.0% | |
| TCAAGCATAAATAGCTCTTG+CGG | - | chr3_1:8861615-8861634 | Msa0347670:intron | 35.0% | |
| ! | GGATTTTGAATTTGAAGAGC+TGG | - | chr3_1:8861782-8861801 | Msa0347670:intron | 35.0% |
| AACAACAATACTGGATGTAC+AGG | - | chr3_1:8862022-8862041 | Msa0347670:CDS | 35.0% | |
| ACAACAATACTGGATGTACA+GGG | - | chr3_1:8862023-8862042 | Msa0347670:CDS | 35.0% | |
| CGACACAGAGAATAATTAAC+AGG | + | chr3_1:8862119-8862138 | None:intergenic | 35.0% | |
| GTTTCAACAACTTGCAAACA+AGG | + | chr3_1:8862279-8862298 | None:intergenic | 35.0% | |
| GTAATTGAAATGTGTGATGC+AGG | - | chr3_1:8862322-8862341 | Msa0347670:intron | 35.0% | |
| !!! | ACAGCTATCTATTTTAGCCA+TGG | + | chr3_1:8862390-8862409 | None:intergenic | 35.0% |
| ! | AAAGTTTCTTTGGAAACGGA+CGG | + | chr3_1:8862434-8862453 | None:intergenic | 35.0% |
| CAAATGTACATTGTCAATGC+TGG | - | chr3_1:8862516-8862535 | Msa0347670:CDS | 35.0% | |
| CCTGTATCTTTGCAATAGTT+TGG | + | chr3_1:8862593-8862612 | None:intergenic | 35.0% | |
| CCAAACTATTGCAAAGATAC+AGG | - | chr3_1:8862590-8862609 | Msa0347670:CDS | 35.0% | |
| TATTGCAAAGATACAGGTGA+AGG | - | chr3_1:8862596-8862615 | Msa0347670:CDS | 35.0% | |
| ! | TACAGGAAGTAATTGACTCT+AGG | - | chr3_1:8862733-8862752 | Msa0347670:intron | 35.0% |
| ACTAGAATGCGGTATAATGA+AGG | + | chr3_1:8862771-8862790 | None:intergenic | 35.0% | |
| ACATGAACCACCAAGAAAAT+CGG | + | chr3_1:8862845-8862864 | None:intergenic | 35.0% | |
| ATGATATCAGGATCATTCCA+TGG | + | chr3_1:8862910-8862929 | None:intergenic | 35.0% | |
| GAATGATCCTGATATCATGA+AGG | - | chr3_1:8862912-8862931 | Msa0347670:intron | 35.0% | |
| TACCTTGTCAAACTAGCATT+TGG | - | chr3_1:8863007-8863026 | Msa0347670:intron | 35.0% | |
| !!! | ATTTTAGCTATCAGGTAACG+CGG | - | chr3_1:8863051-8863070 | Msa0347670:intron | 35.0% |
| ! | GAAGGCAAGTTTAAGTCTTT+TGG | - | chr3_1:8863150-8863169 | Msa0347670:intron | 35.0% |
| ! | TAACTATTTTCTCATCTCCC+AGG | - | chr3_1:8863256-8863275 | Msa0347670:intron | 35.0% |
| ! | AACTATTTTCTCATCTCCCA+GGG | - | chr3_1:8863257-8863276 | Msa0347670:intron | 35.0% |
| ATAACTACATCTCCTTTGTC+TGG | + | chr3_1:8863342-8863361 | None:intergenic | 35.0% | |
| ACAAGGGGATATGTACAATT+TGG | + | chr3_1:8863714-8863733 | None:intergenic | 35.0% | |
| CGAAGTCCAAATATTACAAG+GGG | + | chr3_1:8863729-8863748 | None:intergenic | 35.0% | |
| AGCTTAGCATGAATATTAGC+CGG | + | chr3_1:8863768-8863787 | None:intergenic | 35.0% | |
| ! | AGAAGTTGATTCAATAGCTG+CGG | + | chr3_1:8864034-8864053 | None:intergenic | 35.0% |
| GAACTCAATAACAAACCTGA+TGG | - | chr3_1:8864114-8864133 | Msa0347670:intron | 35.0% | |
| ! | TTAAGTTTGATCTGATGGTG+TGG | - | chr3_1:8864262-8864281 | Msa0347670:five_prime_UTR | 35.0% |
| ATGATTTACTGGAGAACATG+CGG | - | chr3_1:8864349-8864368 | Msa0347670:intron | 35.0% | |
| ! | CTGATGATGTTGCAACTTAT+AGG | + | chr3_1:8864581-8864600 | None:intergenic | 35.0% |
| !! | TGCTTGTGTGAGCTTTAAAT+TGG | - | chr3_1:8864613-8864632 | Msa0347670:intron | 35.0% |
| !! | GCTTGTGTGAGCTTTAAATT+GGG | - | chr3_1:8864614-8864633 | Msa0347670:intron | 35.0% |
| TATTATTCTTGCAGCAGAGA+AGG | - | chr3_1:8864661-8864680 | Msa0347670:intron | 35.0% | |
| ! | GCCTGATATCTGACTTTTAA+AGG | + | chr3_1:8864723-8864742 | None:intergenic | 35.0% |
| ACTAGAGTGACATGAGAATT+TGG | - | chr3_1:8864834-8864853 | Msa0347670:intron | 35.0% | |
| ! | TTTGGAGCAGCTACTAATGA+AGG | - | chr3_1:8860108-8860127 | Msa0347670:intron | 40.0% |
| TCTGTAAGACCTAGTTCAAC+TGG | - | chr3_1:8860275-8860294 | Msa0347670:CDS | 40.0% | |
| TCAGCATTACCAGTTGAACT+AGG | + | chr3_1:8860287-8860306 | None:intergenic | 40.0% | |
| ! | CTGGTAATGCTGATATTGCT+AGG | - | chr3_1:8860294-8860313 | Msa0347670:CDS | 40.0% |
| ACCTCGTAAGTCGTAATTGT+GGG | - | chr3_1:8860346-8860365 | Msa0347670:CDS | 40.0% | |
| ! | TTGGCATGATTTTGTGTGTG+TGG | - | chr3_1:8860436-8860455 | Msa0347670:CDS | 40.0% |
| ! | TGGCATGATTTTGTGTGTGT+GGG | - | chr3_1:8860437-8860456 | Msa0347670:CDS | 40.0% |
| TGAAATTAGGGAGAGGAGAT+TGG | - | chr3_1:8860527-8860546 | Msa0347670:CDS | 40.0% | |
| AATCGGAACTCTTAGGAAGA+AGG | - | chr3_1:8860590-8860609 | Msa0347670:intron | 40.0% | |
| !! | CTAGCTTTAAGAAACCTACC+GGG | + | chr3_1:8860999-8861018 | None:intergenic | 40.0% |
| TGGAACTGATACCATTCTTG+AGG | - | chr3_1:8861082-8861101 | Msa0347670:CDS | 40.0% | |
| CTTTAGGCCACAGAATCTTT+CGG | - | chr3_1:8861148-8861167 | Msa0347670:intron | 40.0% | |
| TGTTACACCGAAAGATTCTG+TGG | + | chr3_1:8861158-8861177 | None:intergenic | 40.0% | |
| ! | GAATCTTTCGGTGTAACAGA+AGG | - | chr3_1:8861160-8861179 | Msa0347670:intron | 40.0% |
| ATGTACAAGTATGAGCTGTG+AGG | + | chr3_1:8861294-8861313 | None:intergenic | 40.0% | |
| TGAGTGTATGACTAAGCAAG+TGG | - | chr3_1:8861346-8861365 | Msa0347670:intron | 40.0% | |
| ! | ACCTCAAGCAACAGTTGTTT+TGG | + | chr3_1:8861451-8861470 | None:intergenic | 40.0% |
| CTTATAAGCTTGGGCTGTTA+AGG | + | chr3_1:8861506-8861525 | None:intergenic | 40.0% | |
| !! | TGCTTGATGGTGTGCAAAAT+GGG | + | chr3_1:8861602-8861621 | None:intergenic | 40.0% |
| !! | ATGCTTGATGGTGTGCAAAA+TGG | + | chr3_1:8861603-8861622 | None:intergenic | 40.0% |
| CAAGCATAAATAGCTCTTGC+GGG | - | chr3_1:8861616-8861635 | Msa0347670:intron | 40.0% | |
| GTATTGCAGTATTACCCTCA+AGG | - | chr3_1:8861810-8861829 | Msa0347670:CDS | 40.0% | |
| TATTACCCTCAAGGTTACCA+TGG | - | chr3_1:8861819-8861838 | Msa0347670:CDS | 40.0% | |
| !! | AGGTTACCATGGAGTTGATA+AGG | - | chr3_1:8861830-8861849 | Msa0347670:CDS | 40.0% |
| !! | TACCATGGAGTTGATAAGGA+AGG | - | chr3_1:8861834-8861853 | Msa0347670:CDS | 40.0% |
| TACCTTCCTTATCAACTCCA+TGG | + | chr3_1:8861839-8861858 | None:intergenic | 40.0% | |
| !! | ATGGAGTTGATAAGGAAGGT+AGG | - | chr3_1:8861838-8861857 | Msa0347670:CDS | 40.0% |
| CTCTCTCAAACTCTTGTACA+TGG | + | chr3_1:8861944-8861963 | None:intergenic | 40.0% | |
| ! | AATCTCTTTAGGGACTAGTG+AGG | - | chr3_1:8862220-8862239 | Msa0347670:intron | 40.0% |
| ! | ATCTCTTTAGGGACTAGTGA+GGG | - | chr3_1:8862221-8862240 | Msa0347670:intron | 40.0% |
| AGATAGCTGTTACTATCCTG+AGG | - | chr3_1:8862400-8862419 | Msa0347670:CDS | 40.0% | |
| ! | AAGTTTCTTTGGAAACGGAC+GGG | + | chr3_1:8862433-8862452 | None:intergenic | 40.0% |
| TACATTGTCAATGCTGGTAC+TGG | - | chr3_1:8862522-8862541 | Msa0347670:CDS | 40.0% | |
| TATAAGATCAGTAACCTCGC+AGG | + | chr3_1:8862665-8862684 | None:intergenic | 40.0% | |
| CATGAACCACCAAGAAAATC+GGG | + | chr3_1:8862844-8862863 | None:intergenic | 40.0% | |
| TCATGTAAATGTCCTGGTGA+AGG | - | chr3_1:8862859-8862878 | Msa0347670:intron | 40.0% | |
| TGGATGTCTTAGGTCTAACA+AGG | - | chr3_1:8862882-8862901 | Msa0347670:intron | 40.0% | |
| GGATGTCTTAGGTCTAACAA+GGG | - | chr3_1:8862883-8862902 | Msa0347670:intron | 40.0% | |
| ! | TTTTGTGAGGCAAATCACCA+GGG | - | chr3_1:8863081-8863100 | Msa0347670:intron | 40.0% |
| CTTCAGTGAGTGTAACTGAA+AGG | + | chr3_1:8863134-8863153 | None:intergenic | 40.0% | |
| CTTTCAGTTACACTCACTGA+AGG | - | chr3_1:8863132-8863151 | Msa0347670:intron | 40.0% | |
| ! | ACTATTTTCTCATCTCCCAG+GGG | - | chr3_1:8863258-8863277 | Msa0347670:intron | 40.0% |
| CTGTAGTAGCCATTCAAATC+TGG | + | chr3_1:8863498-8863517 | None:intergenic | 40.0% | |
| GCTTGTAGGACAAATTCAGA+AGG | - | chr3_1:8863618-8863637 | Msa0347670:CDS | 40.0% | |
| TCGAAGTTGGAAATACTTGC+CGG | - | chr3_1:8863746-8863765 | Msa0347670:CDS | 40.0% | |
| !! | TTTTTCCTTTCCAGGTACTG+CGG | - | chr3_1:8863822-8863841 | Msa0347670:CDS | 40.0% |
| GTTAATAATGACGCGTTCTG+TGG | + | chr3_1:8864007-8864026 | None:intergenic | 40.0% | |
| TTGATTCAATAGCTGCGGAA+TGG | + | chr3_1:8864029-8864048 | None:intergenic | 40.0% | |
| GCAAATGCTTATGGAATCCT+TGG | - | chr3_1:8864155-8864174 | Msa0347670:intron | 40.0% | |
| ! | GACGGACTTTATTCTATCCA+AGG | + | chr3_1:8864175-8864194 | None:intergenic | 40.0% |
| TTGACCTTGAGAAGACAAAG+AGG | - | chr3_1:8864199-8864218 | Msa0347670:intron | 40.0% | |
| TGACCTTGAGAAGACAAAGA+GGG | - | chr3_1:8864200-8864219 | Msa0347670:intron | 40.0% | |
| ATACCCTCTTTGTCTTCTCA+AGG | + | chr3_1:8864206-8864225 | None:intergenic | 40.0% | |
| GATCAACTTACTCGACACTT+CGG | + | chr3_1:8864378-8864397 | None:intergenic | 40.0% | |
| AATTACGACTTACGAGGTCC+CGG | + | chr3_1:8860344-8860363 | None:intergenic | 45.0% | |
| GACCTCGTAAGTCGTAATTG+TGG | - | chr3_1:8860345-8860364 | Msa0347670:CDS | 45.0% | |
| ACCCACAATTACGACTTACG+AGG | + | chr3_1:8860350-8860369 | None:intergenic | 45.0% | |
| CTAACATCCTCAATAGCCAC+TGG | + | chr3_1:8860690-8860709 | None:intergenic | 45.0% | |
| CAAGTCTTTGGCGCAATTCA+AGG | + | chr3_1:8860737-8860756 | None:intergenic | 45.0% | |
| ATCCCCTTTCGACAAGTCTT+TGG | + | chr3_1:8860749-8860768 | None:intergenic | 45.0% | |
| AAAGGGGATCTTTGCCTTCT+AGG | - | chr3_1:8860760-8860779 | Msa0347670:intron | 45.0% | |
| GTTGATCTGTATTTCCCGGT+AGG | - | chr3_1:8860982-8861001 | Msa0347670:intron | 45.0% | |
| TGTGGGAAGAAATGCTTACG+TGG | - | chr3_1:8861048-8861067 | Msa0347670:CDS | 45.0% | |
| AGAAATGCTTACGTGGCGAA+AGG | - | chr3_1:8861055-8861074 | Msa0347670:CDS | 45.0% | |
| TACAAGTATGAGCTGTGAGG+TGG | + | chr3_1:8861291-8861310 | None:intergenic | 45.0% | |
| ! | GCCAAAACAACTGTTGCTTG+AGG | - | chr3_1:8861447-8861466 | Msa0347670:intron | 45.0% |
| ATAAGCTTGGGCTGTTAAGG+TGG | + | chr3_1:8861503-8861522 | None:intergenic | 45.0% | |
| CAACTCCATGGTAACCTTGA+GGG | + | chr3_1:8861827-8861846 | None:intergenic | 45.0% | |
| TCAACTCCATGGTAACCTTG+AGG | + | chr3_1:8861828-8861847 | None:intergenic | 45.0% | |
| !! | AGTTGATAAGGAAGGTAGGC+CGG | - | chr3_1:8861842-8861861 | Msa0347670:CDS | 45.0% |
| CCAAGCCTCTCAATGTAAAC+CGG | + | chr3_1:8861864-8861883 | None:intergenic | 45.0% | |
| CGGTTTACATTGAGAGGCTT+GGG | - | chr3_1:8861862-8861881 | Msa0347670:CDS | 45.0% | |
| AATCTGTCTCTTCGCTGCAA+TGG | + | chr3_1:8861994-8862013 | None:intergenic | 45.0% | |
| AATACTGGATGTACAGGGCT+TGG | - | chr3_1:8862028-8862047 | Msa0347670:CDS | 45.0% | |
| ! | TCTCTTTAGGGACTAGTGAG+GGG | - | chr3_1:8862222-8862241 | Msa0347670:intron | 45.0% |
| AGCAAATCTCTTGGCTTCCA+TGG | - | chr3_1:8862370-8862389 | Msa0347670:CDS | 45.0% | |
| !! | TCAATGCTGGTACTGGCTTT+AGG | - | chr3_1:8862529-8862548 | Msa0347670:CDS | 45.0% |
| !! | CTGGCTTTAGGAAGATGCTT+TGG | - | chr3_1:8862541-8862560 | Msa0347670:CDS | 45.0% |
| TCTATGAACTTCTGTGCAGC+AGG | + | chr3_1:8862567-8862586 | None:intergenic | 45.0% | |
| GCGGTATAATGAAGGAACAG+AGG | + | chr3_1:8862763-8862782 | None:intergenic | 45.0% | |
| GGTGGTTCATGTAAATGTCC+TGG | - | chr3_1:8862853-8862872 | Msa0347670:intron | 45.0% | |
| TGTAAATGTCCTGGTGAAGG+TGG | - | chr3_1:8862862-8862881 | Msa0347670:intron | 45.0% | |
| TTAGGTCTAACAAGGGTCCA+TGG | - | chr3_1:8862890-8862909 | Msa0347670:intron | 45.0% | |
| TCAAAAGCTGGCGCAAGTAA+GGG | + | chr3_1:8862967-8862986 | None:intergenic | 45.0% | |
| TTCAAAAGCTGGCGCAAGTA+AGG | + | chr3_1:8862968-8862987 | None:intergenic | 45.0% | |
| ! | GGCCAAATGCTAGTTTGACA+AGG | + | chr3_1:8863012-8863031 | None:intergenic | 45.0% |
| ! | CTTTTGTGAGGCAAATCACC+AGG | - | chr3_1:8863080-8863099 | Msa0347670:intron | 45.0% |
| ACTCATCTCCTACCAGACAA+AGG | - | chr3_1:8863327-8863346 | Msa0347670:CDS | 45.0% | |
| CTACATCTCCTTTGTCTGGT+AGG | + | chr3_1:8863338-8863357 | None:intergenic | 45.0% | |
| ! | TCACAAACTGGTGCTAAACG+AGG | + | chr3_1:8863365-8863384 | None:intergenic | 45.0% |
| ! | GTCAGGGTACCAGATTTGAA+TGG | - | chr3_1:8863486-8863505 | Msa0347670:intron | 45.0% |
| ATGAAGGATGTCAGCACTTG+TGG | + | chr3_1:8863907-8863926 | None:intergenic | 45.0% | |
| !! | ACAAGTGCTGACATCCTTCA+TGG | - | chr3_1:8863906-8863925 | Msa0347670:intron | 45.0% |
| CGCGTTCTGTGGAATTTGAT+GGG | + | chr3_1:8863996-8864015 | None:intergenic | 45.0% | |
| ACGCGTTCTGTGGAATTTGA+TGG | + | chr3_1:8863997-8864016 | None:intergenic | 45.0% | |
| ! | CTCTGAAGACGTTGTTCACA+AGG | + | chr3_1:8864075-8864094 | None:intergenic | 45.0% |
| CTTGTGAACAACGTCTTCAG+AGG | - | chr3_1:8864073-8864092 | Msa0347670:intron | 45.0% | |
| ACGTCTTCAGAGGCTAGAAA+AGG | - | chr3_1:8864083-8864102 | Msa0347670:intron | 45.0% | |
| AGCATTTGCTCCTTCTCCAA+AGG | + | chr3_1:8864144-8864163 | None:intergenic | 45.0% | |
| GGAGAAGGAGCAAATGCTTA+TGG | - | chr3_1:8864146-8864165 | Msa0347670:intron | 45.0% | |
| CTTCTCAAGGTCAAACTCGA+CGG | + | chr3_1:8864193-8864212 | None:intergenic | 45.0% | |
| ! | GCGAGGCATTCAAGTCTAAT+GGG | - | chr3_1:8864787-8864806 | Msa0347670:intron | 45.0% |
| TGACTATAGGGTTCCACCAG+TGG | - | chr3_1:8860671-8860690 | Msa0347670:intron | 50.0% | |
| ACATCCTCAATAGCCACTGG+TGG | + | chr3_1:8860687-8860706 | None:intergenic | 50.0% | |
| GGATGTTAGAGATGCACGAG+AGG | - | chr3_1:8860701-8860720 | Msa0347670:intron | 50.0% | |
| TTGGCGCAATTCAAGGACTG+CGG | + | chr3_1:8860730-8860749 | None:intergenic | 50.0% | |
| TGCGCCAAAGACTTGTCGAA+AGG | - | chr3_1:8860742-8860761 | Msa0347670:intron | 50.0% | |
| GCGCCAAAGACTTGTCGAAA+GGG | - | chr3_1:8860743-8860762 | Msa0347670:intron | 50.0% | |
| CGCCAAAGACTTGTCGAAAG+GGG | - | chr3_1:8860744-8860763 | Msa0347670:intron | 50.0% | |
| CTTACGTGGCGAAAGGAGTA+TGG | - | chr3_1:8861062-8861081 | Msa0347670:CDS | 50.0% | |
| AAGTATGAGCTGTGAGGTGG+AGG | + | chr3_1:8861288-8861307 | None:intergenic | 50.0% | |
| GCATAAATAGCTCTTGCGGG+AGG | - | chr3_1:8861619-8861638 | Msa0347670:intron | 50.0% | |
| TAAATAGCTCTTGCGGGAGG+CGG | - | chr3_1:8861622-8861641 | Msa0347670:intron | 50.0% | |
| ! | GTAGGCCGGTTTACATTGAG+AGG | - | chr3_1:8861856-8861875 | Msa0347670:CDS | 50.0% |
| CCGGTTTACATTGAGAGGCT+TGG | - | chr3_1:8861861-8861880 | Msa0347670:CDS | 50.0% | |
| GTGATGTGCATCAAGCGACT+TGG | + | chr3_1:8861897-8861916 | None:intergenic | 50.0% | |
| TTCGCTGCAATGGAACATGC+TGG | + | chr3_1:8861984-8862003 | None:intergenic | 50.0% | |
| ! | CTCTTTAGGGACTAGTGAGG+GGG | - | chr3_1:8862223-8862242 | Msa0347670:intron | 50.0% |
| GCGTACTGCAGCAAATCTCT+TGG | - | chr3_1:8862361-8862380 | Msa0347670:intron | 50.0% | |
| ACGGACGGGATAAAAACCTC+AGG | + | chr3_1:8862419-8862438 | None:intergenic | 50.0% | |
| TTACATGCTCTTCTCCTGCG+AGG | - | chr3_1:8862648-8862667 | Msa0347670:intron | 50.0% | |
| ! | AGCCAGTTGCCCGATTTTCT+TGG | - | chr3_1:8862832-8862851 | Msa0347670:intron | 50.0% |
| CACCAAGAAAATCGGGCAAC+TGG | + | chr3_1:8862837-8862856 | None:intergenic | 50.0% | |
| ! | CAGTTGCCCGATTTTCTTGG+TGG | - | chr3_1:8862835-8862854 | Msa0347670:intron | 50.0% |
| CTAAGACATCCACCTTCACC+AGG | + | chr3_1:8862874-8862893 | None:intergenic | 50.0% | |
| CTGGTGAAGGTGGATGTCTT+AGG | - | chr3_1:8862872-8862891 | Msa0347670:intron | 50.0% | |
| TTAGCTATCAGGTAACGCGG+AGG | - | chr3_1:8863054-8863073 | Msa0347670:intron | 50.0% | |
| AGCGACTCTTCAGCAGAATC+AGG | - | chr3_1:8863287-8863306 | Msa0347670:intron | 50.0% | |
| ! | CACGGCATGTGCATTTTGTG+TGG | - | chr3_1:8863424-8863443 | Msa0347670:intron | 50.0% |
| ! | ACCTAACCGCTGTCTTTTGC+AGG | - | chr3_1:8863464-8863483 | Msa0347670:intron | 50.0% |
| ACCTGCAAAAGACAGCGGTT+AGG | + | chr3_1:8863468-8863487 | None:intergenic | 50.0% | |
| GCAATGACTGCTCACGAGTA+AGG | + | chr3_1:8863575-8863594 | None:intergenic | 50.0% | |
| AAATTGCTGACCGCAGTACC+TGG | + | chr3_1:8863835-8863854 | None:intergenic | 50.0% | |
| CAAACCTGATGGCATGCCTT+TGG | - | chr3_1:8864125-8864144 | Msa0347670:intron | 50.0% | |
| ! | TTCTCCAAAGGCATGCCATC+AGG | + | chr3_1:8864132-8864151 | None:intergenic | 50.0% |
| ! | TGATGGCATGCCTTTGGAGA+AGG | - | chr3_1:8864131-8864150 | Msa0347670:intron | 50.0% |
| TAGACTTGAATGCCTCGCCT+CGG | + | chr3_1:8864785-8864804 | None:intergenic | 50.0% | |
| ! | GGCGAGGCATTCAAGTCTAA+TGG | - | chr3_1:8864786-8864805 | Msa0347670:intron | 50.0% |
| GCTAGGCTAGACAACGTCAC+CGG | - | chr3_1:8860311-8860330 | Msa0347670:CDS | 55.0% | |
| CTAGGCTAGACAACGTCACC+GGG | - | chr3_1:8860312-8860331 | Msa0347670:CDS | 55.0% | |
| GGTTCCACCAGTGGCTATTG+AGG | - | chr3_1:8860680-8860699 | Msa0347670:intron | 55.0% | |
| ! | GGACTAGTGAGGGGGTTCTT+TGG | - | chr3_1:8862231-8862250 | Msa0347670:intron | 55.0% |
| ! | ACGCGGAGGCAACTTTTGTG+AGG | - | chr3_1:8863068-8863087 | Msa0347670:intron | 55.0% |
| GTTCTGTTCATTGGACGCCC+TGG | + | chr3_1:8863101-8863120 | None:intergenic | 55.0% | |
| ! | ACCGCTGTCTTTTGCAGGTC+AGG | - | chr3_1:8863469-8863488 | Msa0347670:intron | 55.0% |
| CCCTGACCTGCAAAAGACAG+CGG | + | chr3_1:8863473-8863492 | None:intergenic | 55.0% | |
| ! | CCGCTGTCTTTTGCAGGTCA+GGG | - | chr3_1:8863470-8863489 | Msa0347670:intron | 55.0% |
| CGCAGCGAGTCTTTCCATGA+AGG | + | chr3_1:8863923-8863942 | None:intergenic | 55.0% | |
| !! | TCGCACAGTCGAGCGTTGAT+CGG | - | chr3_1:8864747-8864766 | Msa0347670:intron | 55.0% |
| AGACTTGAATGCCTCGCCTC+GGG | + | chr3_1:8864784-8864803 | None:intergenic | 55.0% | |
| CAACGTCACCGGGTTCGATC+CGG | - | chr3_1:8860322-8860341 | Msa0347670:CDS | 60.0% | |
| AACGTCACCGGGTTCGATCC+GGG | - | chr3_1:8860323-8860342 | Msa0347670:CDS | 60.0% | |
| GCTGACCGCAGTACCTGGAA+AGG | + | chr3_1:8863830-8863849 | None:intergenic | 60.0% | |
| !! | TCGAGCGTTGATCGGACCCA+AGG | - | chr3_1:8864755-8864774 | Msa0347670:intron | 60.0% |
| ACGAGGTCCCGGATCGAACC+CGG | + | chr3_1:8860333-8860352 | None:intergenic | 65.0% | |
| AGAGTCGCTGCATCGCCCCT+GGG | + | chr3_1:8863276-8863295 | None:intergenic | 65.0% | |
| AAGAGTCGCTGCATCGCCCC+TGG | + | chr3_1:8863277-8863296 | None:intergenic | 65.0% | |
| ATCGGACCCAAGGAAGCCCG+AGG | - | chr3_1:8864765-8864784 | Msa0347670:intron | 65.0% | |
| ACCCAAGGAAGCCCGAGGCG+AGG | - | chr3_1:8864770-8864789 | Msa0347670:intron | 70.0% | |
| GCCTCGCCTCGGGCTTCCTT+GGG | + | chr3_1:8864774-8864793 | None:intergenic | 70.0% | |
| TGCCTCGCCTCGGGCTTCCT+TGG | + | chr3_1:8864775-8864794 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8859328 | 8865090 | 8859328 | ID=Msa0347670;Name=Msa0347670 |
| chr3_1 | mRNA | 8859328 | 8865090 | 8859328 | ID=Msa0347670-mRNA-1;Parent=Msa0347670;Name=Msa0347670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=326|0.92|0.93|1|0.92|0.86|15|395|624 |
| chr3_1 | exon | 8859328 | 8859743 | 8859328 | ID=Msa0347670-mRNA-1:exon:2579;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8860032 | 8860106 | 8860032 | ID=Msa0347670-mRNA-1:exon:2578;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8860197 | 8860582 | 8860197 | ID=Msa0347670-mRNA-1:exon:2577;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8860779 | 8860932 | 8860779 | ID=Msa0347670-mRNA-1:exon:2576;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861030 | 8861140 | 8861030 | ID=Msa0347670-mRNA-1:exon:2575;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861247 | 8861360 | 8861247 | ID=Msa0347670-mRNA-1:exon:2574;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861485 | 8861584 | 8861485 | ID=Msa0347670-mRNA-1:exon:2573;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861664 | 8861713 | 8861664 | ID=Msa0347670-mRNA-1:exon:2572;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861807 | 8861911 | 8861807 | ID=Msa0347670-mRNA-1:exon:2571;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8861997 | 8862074 | 8861997 | ID=Msa0347670-mRNA-1:exon:2570;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8862369 | 8862635 | 8862369 | ID=Msa0347670-mRNA-1:exon:2569;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8863315 | 8863414 | 8863315 | ID=Msa0347670-mRNA-1:exon:2568;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8863610 | 8863916 | 8863610 | ID=Msa0347670-mRNA-1:exon:2567;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8864209 | 8864312 | 8864209 | ID=Msa0347670-mRNA-1:exon:2566;Parent=Msa0347670-mRNA-1 |
| chr3_1 | exon | 8864862 | 8865090 | 8864862 | ID=Msa0347670-mRNA-1:exon:2565;Parent=Msa0347670-mRNA-1 |
| chr3_1 | five_prime_UTR | 8864862 | 8865090 | 8864862 | ID=Msa0347670-mRNA-1:five_prime_utr;Parent=Msa0347670-mRNA-1 |
| chr3_1 | five_prime_UTR | 8864216 | 8864312 | 8864216 | ID=Msa0347670-mRNA-1:five_prime_utr;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8864209 | 8864215 | 8864209 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8863610 | 8863916 | 8863610 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8863315 | 8863414 | 8863315 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8862369 | 8862635 | 8862369 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861997 | 8862074 | 8861997 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861807 | 8861911 | 8861807 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861664 | 8861713 | 8861664 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861485 | 8861584 | 8861485 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861247 | 8861360 | 8861247 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8861030 | 8861140 | 8861030 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8860779 | 8860932 | 8860779 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8860197 | 8860582 | 8860197 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8860032 | 8860106 | 8860032 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | CDS | 8859723 | 8859743 | 8859723 | ID=Msa0347670-mRNA-1:cds;Parent=Msa0347670-mRNA-1 |
| chr3_1 | three_prime_UTR | 8859328 | 8859722 | 8859328 | ID=Msa0347670-mRNA-1:three_prime_utr;Parent=Msa0347670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
