Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348090 | RHN65490.1 | 78.995 | 657 | 82 | 6 | 4 | 659 | 2 | 603 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348090 | A0A396IJW8 | 78.995 | 657 | 82 | 6 | 4 | 659 | 2 | 603 | 0.0 | 1032 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0348090 | 0.801004 | 1.104723e-48 | -8.615850e-47 |
| Msa0014710 | Msa0348090 | 0.814457 | 1.525606e-51 | -8.615850e-47 |
| Msa0017510 | Msa0348090 | 0.815846 | 7.500468e-52 | -8.615850e-47 |
| Msa0026910 | Msa0348090 | 0.818475 | 1.923116e-52 | -8.615850e-47 |
| Msa0031340 | Msa0348090 | 0.801203 | 1.005924e-48 | -8.615850e-47 |
| Msa0061340 | Msa0348090 | 0.809156 | 2.174515e-50 | -8.615850e-47 |
| Msa0089630 | Msa0348090 | 0.800967 | 1.124110e-48 | -8.615850e-47 |
| Msa0123300 | Msa0348090 | 0.801917 | 7.182148e-49 | -8.615850e-47 |
| Msa0124060 | Msa0348090 | 0.808207 | 3.469595e-50 | -8.615850e-47 |
| Msa0131770 | Msa0348090 | 0.804294 | 2.315122e-49 | -8.615850e-47 |
| Msa0138370 | Msa0348090 | 0.825465 | 4.618147e-54 | -8.615850e-47 |
| Msa0152400 | Msa0348090 | 0.807820 | 4.194254e-50 | -8.615850e-47 |
| Msa0157290 | Msa0348090 | 0.816914 | 4.324719e-52 | -8.615850e-47 |
| Msa0168500 | Msa0348090 | 0.811077 | 8.383730e-51 | -8.615850e-47 |
| Msa0180500 | Msa0348090 | 0.802424 | 5.646901e-49 | -8.615850e-47 |
| Msa0225860 | Msa0348090 | 0.803087 | 4.120899e-49 | -8.615850e-47 |
| Msa0260780 | Msa0348090 | 0.819203 | 1.313884e-52 | -8.615850e-47 |
| Msa0300270 | Msa0348090 | 0.808667 | 2.766781e-50 | -8.615850e-47 |
| Msa0330340 | Msa0348090 | 0.815582 | 8.588211e-52 | -8.615850e-47 |
| Msa0348090 | Msa0367870 | 0.818818 | 1.607326e-52 | -8.615850e-47 |
| Msa0348090 | Msa0376350 | 0.816130 | 6.482010e-52 | -8.615850e-47 |
| Msa0348090 | Msa0388960 | 0.804828 | 1.791119e-49 | -8.615850e-47 |
| Msa0348090 | Msa0394770 | 0.901555 | 2.380584e-78 | -8.615850e-47 |
| Msa0348090 | Msa0395790 | 0.813925 | 2.000003e-51 | -8.615850e-47 |
| Msa0348090 | Msa0405130 | 0.801857 | 7.385764e-49 | -8.615850e-47 |
| Msa0348090 | Msa0417270 | 0.806448 | 8.184281e-50 | -8.615850e-47 |
| Msa0348090 | Msa0417880 | 0.805304 | 1.424280e-49 | -8.615850e-47 |
| Msa0348090 | Msa0424790 | 0.802709 | 4.933552e-49 | -8.615850e-47 |
| Msa0348090 | Msa0440750 | 0.800918 | 1.150076e-48 | -8.615850e-47 |
| Msa0348090 | Msa0443260 | 0.805240 | 1.468893e-49 | -8.615850e-47 |
| Msa0348090 | Msa0464680 | 0.823420 | 1.398345e-53 | -8.615850e-47 |
| Msa0348090 | Msa0488560 | 0.800506 | 1.395658e-48 | -8.615850e-47 |
| Msa0348090 | Msa0495330 | 0.811112 | 8.240596e-51 | -8.615850e-47 |
| Msa0348090 | Msa0504210 | 0.807957 | 3.922130e-50 | -8.615850e-47 |
| Msa0348090 | Msa0516170 | 0.824950 | 6.112740e-54 | -8.615850e-47 |
| Msa0348090 | Msa0529890 | 0.802959 | 4.380561e-49 | -8.615850e-47 |
| Msa0348090 | Msa0569200 | 0.801681 | 8.027367e-49 | -8.615850e-47 |
| Msa0348090 | Msa0571130 | 0.825020 | 5.886055e-54 | -8.615850e-47 |
| Msa0348090 | Msa0585560 | 0.809822 | 1.565151e-50 | -8.615850e-47 |
| Msa0348090 | Msa0597790 | 0.810591 | 1.068211e-50 | -8.615850e-47 |
| Msa0348090 | Msa0601750 | 0.811570 | 6.554548e-51 | -8.615850e-47 |
| Msa0348090 | Msa0613440 | 0.801894 | 7.258584e-49 | -8.615850e-47 |
| Msa0348090 | Msa0625720 | 0.802644 | 5.088408e-49 | -8.615850e-47 |
| Msa0348090 | Msa0626510 | 0.816438 | 5.530299e-52 | -8.615850e-47 |
| Msa0348090 | Msa0627450 | 0.809892 | 1.511697e-50 | -8.615850e-47 |
| Msa0348090 | Msa0629450 | 0.800414 | 1.457807e-48 | -8.615850e-47 |
| Msa0348090 | Msa0663390 | 0.801292 | 9.644788e-49 | -8.615850e-47 |
| Msa0348090 | Msa0663810 | 0.802137 | 6.471541e-49 | -8.615850e-47 |
| Msa0348090 | Msa0683510 | 0.804651 | 1.949952e-49 | -8.615850e-47 |
| Msa0348090 | Msa0685750 | 0.805266 | 1.450186e-49 | -8.615850e-47 |
| Msa0348090 | Msa0717890 | 0.804639 | 1.961282e-49 | -8.615850e-47 |
| Msa0348090 | Msa0731940 | 0.832890 | 7.301884e-56 | -8.615850e-47 |
| Msa0348090 | Msa0746160 | 0.800332 | 1.514667e-48 | -8.615850e-47 |
| Msa0348090 | Msa0760130 | 0.823759 | 1.165115e-53 | -8.615850e-47 |
| Msa0348090 | Msa0810220 | 0.811503 | 6.777774e-51 | -8.615850e-47 |
| Msa0348090 | Msa0832340 | 0.802763 | 4.808372e-49 | -8.615850e-47 |
| Msa0348090 | Msa0844490 | 0.813200 | 2.886405e-51 | -8.615850e-47 |
| Msa0348090 | Msa0844570 | 0.801895 | 7.254181e-49 | -8.615850e-47 |
| Msa0348090 | Msa0861510 | 0.802413 | 5.676043e-49 | -8.615850e-47 |
| Msa0348090 | Msa0861600 | 0.801468 | 8.879182e-49 | -8.615850e-47 |
| Msa0348090 | Msa0880140 | 0.809913 | 1.495740e-50 | -8.615850e-47 |
| Msa0348090 | Msa0967380 | 0.804617 | 1.982072e-49 | -8.615850e-47 |
| Msa0348090 | Msa0969450 | 0.800413 | 1.458272e-48 | -8.615850e-47 |
| Msa0348090 | Msa0969520 | 0.822769 | 1.983876e-53 | -8.615850e-47 |
| Msa0348090 | Msa1004840 | 0.808509 | 2.990868e-50 | -8.615850e-47 |
| Msa0348090 | Msa1019000 | 0.804003 | 2.660631e-49 | -8.615850e-47 |
| Msa0348090 | Msa1019430 | 0.814895 | 1.220564e-51 | -8.615850e-47 |
| Msa0348090 | Msa1019470 | 0.808436 | 3.099994e-50 | -8.615850e-47 |
| Msa0348090 | Msa1030970 | 0.809059 | 2.281814e-50 | -8.615850e-47 |
| Msa0348090 | Msa1041670 | 0.808317 | 3.286616e-50 | -8.615850e-47 |
| Msa0348090 | Msa1075540 | 0.832393 | 9.700315e-56 | -8.615850e-47 |
| Msa0348090 | Msa1075650 | 0.802567 | 5.276747e-49 | -8.615850e-47 |
| Msa0348090 | Msa1081330 | 0.824001 | 1.022241e-53 | -8.615850e-47 |
| Msa0348090 | Msa1101090 | 0.800059 | 1.721451e-48 | -8.615850e-47 |
| Msa0348090 | Msa1119940 | 0.809918 | 1.492227e-50 | -8.615850e-47 |
| Msa0348090 | Msa1121490 | 0.808033 | 3.777184e-50 | -8.615850e-47 |
| Msa0348090 | Msa1123380 | 0.803553 | 3.299545e-49 | -8.615850e-47 |
| Msa0348090 | Msa1130240 | 0.800614 | 1.327021e-48 | -8.615850e-47 |
| Msa0348090 | Msa1137570 | 0.828768 | 7.483239e-55 | -8.615850e-47 |
| Msa0348090 | Msa1142020 | 0.801608 | 8.309196e-49 | -8.615850e-47 |
| Msa0348090 | Msa1144450 | 0.808770 | 2.630970e-50 | -8.615850e-47 |
| Msa0348090 | Msa1144750 | 0.801466 | 8.886083e-49 | -8.615850e-47 |
| Msa0348090 | Msa1147740 | 0.805034 | 1.622051e-49 | -8.615850e-47 |
| Msa0348090 | Msa1166560 | 0.806319 | 8.715105e-50 | -8.615850e-47 |
| Msa0348090 | Msa1187730 | 0.807597 | 4.676517e-50 | -8.615850e-47 |
| Msa0348090 | Msa1189070 | 0.800585 | 1.345361e-48 | -8.615850e-47 |
| Msa0348090 | Msa1190920 | 0.807147 | 5.824693e-50 | -8.615850e-47 |
| Msa0348090 | Msa1193290 | 0.805150 | 1.533966e-49 | -8.615850e-47 |
| Msa0348090 | Msa1199570 | 0.825943 | 3.557256e-54 | -8.615850e-47 |
| Msa0348090 | Msa1199830 | -0.817339 | 3.470638e-52 | -8.615850e-47 |
| Msa0348090 | Msa1208430 | 0.803941 | 2.740982e-49 | -8.615850e-47 |
| Msa0348090 | Msa1238930 | 0.809055 | 2.285695e-50 | -8.615850e-47 |
| Msa0348090 | Msa1243490 | 0.824631 | 7.267854e-54 | -8.615850e-47 |
| Msa0348090 | Msa1284680 | 0.818820 | 1.605499e-52 | -8.615850e-47 |
| Msa0348090 | Msa1297230 | 0.800946 | 1.135193e-48 | -8.615850e-47 |
| Msa0348090 | Msa1298370 | 0.800770 | 1.233231e-48 | -8.615850e-47 |
| Msa0348090 | Msa1303250 | 0.814754 | 1.311116e-51 | -8.615850e-47 |
| Msa0348090 | Msa1306850 | 0.816432 | 5.546480e-52 | -8.615850e-47 |
| Msa0348090 | Msa1328710 | 0.814957 | 1.182529e-51 | -8.615850e-47 |
| Msa0348090 | Msa1331000 | 0.813783 | 2.148842e-51 | -8.615850e-47 |
| Msa0348090 | Msa1333480 | 0.811453 | 6.948783e-51 | -8.615850e-47 |
| Msa0348090 | Msa1346370 | 0.806086 | 9.757198e-50 | -8.615850e-47 |
| Msa0348090 | Msa1366810 | 0.800263 | 1.564432e-48 | -8.615850e-47 |
| Msa0348090 | Msa1372760 | 0.827052 | 1.935264e-54 | -8.615850e-47 |
| Msa0348090 | Msa1402400 | 0.803626 | 3.187117e-49 | -8.615850e-47 |
| Msa0348090 | Msa1448640 | 0.806915 | 6.522230e-50 | -8.615850e-47 |
| Msa0348090 | Msa1461300 | 0.803859 | 2.851008e-49 | -8.615850e-47 |
| Msa0348090 | Msa1466540 | 0.822727 | 2.028872e-53 | -8.615850e-47 |
| Msa0348090 | Msa1466920 | 0.811947 | 5.425574e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348090 | MtrunA17_Chr3g0080441 | 78.995 | 657 | 82 | 6 | 4 | 659 | 2 | 603 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348090 | AT1G48560.1 | 38.760 | 129 | 75 | 4 | 533 | 659 | 515 | 641 | 1.90e-15 | 80.5 |
| Msa0348090 | AT1G48560.2 | 38.760 | 129 | 75 | 4 | 533 | 659 | 534 | 660 | 2.25e-15 | 80.5 |
Find 123 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCCATATCCACTTTA+TGG | 0.076729 | 3_1:+9968325 | None:intergenic |
| TTTATTCTTGCTGACTCTTT+TGG | 0.220128 | 3_1:+9968108 | None:intergenic |
| GTTTGACCCGATTGGAGTTT+TGG | 0.222197 | 3_1:-9971673 | Msa0348090:CDS |
| ATAAAGAAGTTCAGTGTATT+TGG | 0.231819 | 3_1:-9967910 | Msa0348090:CDS |
| TTCGAAAAGGTGACATAGTT+TGG | 0.252992 | 3_1:-9972004 | Msa0348090:CDS |
| CGTTCTGCACTTAGGTTATT+TGG | 0.257181 | 3_1:-9971780 | Msa0348090:CDS |
| AAGGTGCGTTGTGGGGTGTT+AGG | 0.262813 | 3_1:+9971879 | None:intergenic |
| TTTATTAACTGTTCCTTTGA+TGG | 0.266375 | 3_1:+9967928 | None:intergenic |
| CCTTAAGCCCATTCCACATT+TGG | 0.272294 | 3_1:-9968779 | Msa0348090:CDS |
| CTTAAGCCCATTCCACATTT+GGG | 0.282277 | 3_1:-9968778 | Msa0348090:CDS |
| CTTCTTTGTAGAGTTTCTTC+TGG | 0.284374 | 3_1:+9971541 | None:intergenic |
| GTGAAGATTATGCTAGTTTC+AGG | 0.284969 | 3_1:+9968357 | None:intergenic |
| TGATGGTAGGTTGAAATTCT+TGG | 0.296686 | 3_1:+9967945 | None:intergenic |
| ACCAAACCATACCTTTCTTT+TGG | 0.308445 | 3_1:+9967789 | None:intergenic |
| TACAAAGAAGCTACAAAATT+AGG | 0.312714 | 3_1:-9971528 | Msa0348090:intron |
| GATGGTAGGTTGAAATTCTT+GGG | 0.313799 | 3_1:+9967946 | None:intergenic |
| GTGATGCTGGTATCCGGTTT+TGG | 0.330299 | 3_1:-9967768 | Msa0348090:CDS |
| CTCAGTTACTCGAGAATCTA+TGG | 0.338466 | 3_1:-9969000 | Msa0348090:CDS |
| CAACGATTGGTCTCCGGCTT+TGG | 0.345750 | 3_1:-9971949 | Msa0348090:CDS |
| AACCTCGGATTCGACGAAAA+AGG | 0.354312 | 3_1:+9971860 | None:intergenic |
| GTTCAGAAATGTAGAACAAA+TGG | 0.356017 | 3_1:+9967978 | None:intergenic |
| ACTCATTTGGTCGATTATAT+CGG | 0.361192 | 3_1:-9968621 | Msa0348090:CDS |
| GAAGCCAACAGTTCCTGATT+TGG | 0.362711 | 3_1:-9968898 | Msa0348090:CDS |
| TGAGGTCCATAAAGTGGATA+TGG | 0.363415 | 3_1:-9968331 | Msa0348090:CDS |
| TCGATACCCAATTTAAAAGT+TGG | 0.371331 | 3_1:-9968024 | Msa0348090:CDS |
| CAATCGTTGTTGTTGTTATG+AGG | 0.372970 | 3_1:+9971963 | None:intergenic |
| AAAATCCAATTCCTTGAAAC+AGG | 0.374502 | 3_1:-9967647 | Msa0348090:CDS |
| GGACATAAAGCATGTTTATC+TGG | 0.374770 | 3_1:+9968513 | None:intergenic |
| AGGTGCGTTGTGGGGTGTTA+GGG | 0.377797 | 3_1:+9971880 | None:intergenic |
| TTCCGACTTCAAGACTCATT+TGG | 0.383976 | 3_1:-9968634 | Msa0348090:CDS |
| AGAGAATGTCCTTCCAAATC+AGG | 0.407399 | 3_1:+9968885 | None:intergenic |
| ACAAGAAGCAACATATTGAT+AGG | 0.415947 | 3_1:+9968047 | None:intergenic |
| TTGCGGTGTCTTTGTATAAC+GGG | 0.417465 | 3_1:-9971738 | Msa0348090:CDS |
| CATCCCTCAGCAAAACTAAC+AGG | 0.420090 | 3_1:-9967694 | Msa0348090:CDS |
| TTAAAAGTTGGAGAGCAATC+AGG | 0.420947 | 3_1:-9968012 | Msa0348090:CDS |
| CCAAATGTGGAATGGGCTTA+AGG | 0.421130 | 3_1:+9968779 | None:intergenic |
| CATATAGTGGTTTCTATGTC+AGG | 0.421269 | 3_1:+9968558 | None:intergenic |
| TCGAAAAGGTGACATAGTTT+GGG | 0.422847 | 3_1:-9972003 | Msa0348090:CDS |
| TTTGCGGTGTCTTTGTATAA+CGG | 0.426012 | 3_1:-9971739 | Msa0348090:CDS |
| TTTCTTCGTTTGTGTTCAAA+AGG | 0.435082 | 3_1:+9967739 | None:intergenic |
| GTAGAGTTTCTTCTGGTGAA+TGG | 0.436827 | 3_1:+9971548 | None:intergenic |
| CCACTGGTAGTTGGAACCTC+TGG | 0.437260 | 3_1:+9968831 | None:intergenic |
| TTGTTACACTGGCTCAGCTC+AGG | 0.437997 | 3_1:-9967857 | Msa0348090:CDS |
| TCAGAATTGTTTCGAGTTTG+CGG | 0.438255 | 3_1:-9971755 | Msa0348090:CDS |
| GCCAAAAGAAAGGTATGGTT+TGG | 0.439729 | 3_1:-9967790 | Msa0348090:CDS |
| TCTTTCCCCAAATGTGGAAT+GGG | 0.445797 | 3_1:+9968772 | None:intergenic |
| ACAAAACCCAAAACTCCAAT+CGG | 0.453480 | 3_1:+9971666 | None:intergenic |
| GAGTGAGACGCCGAGGTGGC+TGG | 0.454143 | 3_1:+9971917 | None:intergenic |
| AACTTCGTTGCAGCCTCTCC+TGG | 0.458671 | 3_1:+9968163 | None:intergenic |
| TTAACTGTTCCTTTGATGGT+AGG | 0.461756 | 3_1:+9967932 | None:intergenic |
| AAAACAGAAAGAAACATTGT+AGG | 0.465799 | 3_1:-9967624 | Msa0348090:CDS |
| AAGGTATGGTTTGGTGATGC+TGG | 0.470532 | 3_1:-9967781 | Msa0348090:CDS |
| CAAAAGGATCTAGCCAAAAC+CGG | 0.471648 | 3_1:+9967755 | None:intergenic |
| GGTTTGGTGATGCTGGTATC+CGG | 0.481359 | 3_1:-9967774 | Msa0348090:CDS |
| TTCTTTCCCCAAATGTGGAA+TGG | 0.482297 | 3_1:+9968771 | None:intergenic |
| AAGTATTCGAAAAGACAATC+TGG | 0.485191 | 3_1:-9968394 | Msa0348090:CDS |
| CTGGAAGATGTGACCAAAGC+CGG | 0.488329 | 3_1:+9971936 | None:intergenic |
| GGTTATCAGTTTGACCCGAT+TGG | 0.490496 | 3_1:-9971681 | Msa0348090:CDS |
| GTCGATTATATCGGTGAAAG+AGG | 0.494744 | 3_1:-9968612 | Msa0348090:CDS |
| TTCTGCGGATCGTTTGTTAG+AGG | 0.495114 | 3_1:-9968079 | Msa0348090:CDS |
| CCTTCCAAATCAGGAACTGT+TGG | 0.502720 | 3_1:+9968894 | None:intergenic |
| ATCTAACTCTTCTGTTTACC+AGG | 0.505522 | 3_1:-9968181 | Msa0348090:CDS |
| CAATCTTCTTATAGCACCAA+TGG | 0.505651 | 3_1:+9968920 | None:intergenic |
| TTCAGAAATGTAGAACAAAT+GGG | 0.509304 | 3_1:+9967979 | None:intergenic |
| TCAGCTTTACCACTGGTAGT+TGG | 0.510578 | 3_1:+9968822 | None:intergenic |
| TAGCCTCATGATTATCAGAA+TGG | 0.511698 | 3_1:+9968238 | None:intergenic |
| GAAGGAAAGAAGCATGAGAA+AGG | 0.516021 | 3_1:-9972027 | None:intergenic |
| ATGTGGAATGGGCTTAAGGC+AGG | 0.519305 | 3_1:+9968783 | None:intergenic |
| TCATCTCCTAGTTTAGCGTC+TGG | 0.519441 | 3_1:-9968264 | Msa0348090:CDS |
| CACTGATGAGGTCCATAAAG+TGG | 0.520491 | 3_1:-9968337 | Msa0348090:CDS |
| AAGCGTTCCGTTCTGCACTT+AGG | 0.520680 | 3_1:-9971788 | Msa0348090:CDS |
| TCTGCGGATCGTTTGTTAGA+GGG | 0.522091 | 3_1:-9968078 | Msa0348090:CDS |
| ATTCACATGTAAAAGACTGT+TGG | 0.523862 | 3_1:+9968286 | None:intergenic |
| TGGAAGCCAGACGCTAAACT+AGG | 0.529369 | 3_1:+9968258 | None:intergenic |
| CTCATAACAACAACAACGAT+TGG | 0.533854 | 3_1:-9971962 | Msa0348090:CDS |
| CGAAAGGGTAATTCATCGAA+GGG | 0.537470 | 3_1:+9971834 | None:intergenic |
| CAACAACAACGATTGGTCTC+CGG | 0.537627 | 3_1:-9971955 | Msa0348090:CDS |
| TTACACTGGCTCAGCTCAGG+TGG | 0.537648 | 3_1:-9967854 | Msa0348090:CDS |
| AAAGGTATCGTCATTTCGAA+AGG | 0.539471 | 3_1:+9971818 | None:intergenic |
| AAACAGAAAGAAACATTGTA+GGG | 0.540251 | 3_1:-9967623 | Msa0348090:CDS |
| GTCACATCTTCCAGCCACCT+CGG | 0.544285 | 3_1:-9971927 | Msa0348090:CDS |
| TCTTGAGCTCTGCAAAGTTG+AGG | 0.544614 | 3_1:+9968492 | None:intergenic |
| AGCATGAGAAAGGTTCGAAA+AGG | 0.546119 | 3_1:-9972017 | Msa0348090:CDS |
| GTTGAGGCTTCGTGTACTGT+TGG | 0.546845 | 3_1:-9971618 | Msa0348090:CDS |
| GTACTGATGTGTGAGATCCT+AGG | 0.551189 | 3_1:+9968432 | None:intergenic |
| AAGGTATCGTCATTTCGAAA+GGG | 0.552066 | 3_1:+9971819 | None:intergenic |
| ACGGAACGCTTCACATTGAA+AGG | 0.553007 | 3_1:+9971800 | None:intergenic |
| TCGAAAGGGTAATTCATCGA+AGG | 0.554318 | 3_1:+9971833 | None:intergenic |
| TTAGATTCTTTCCCCAAATG+TGG | 0.557194 | 3_1:+9968766 | None:intergenic |
| GAAAGAATCTAAAATTTGAA+AGG | 0.557568 | 3_1:-9968755 | Msa0348090:CDS |
| GGGTCATAACGAAGAGGAGA+GGG | 0.567565 | 3_1:-9971718 | Msa0348090:CDS |
| AATCGTTGTTGTTGTTATGA+GGG | 0.569125 | 3_1:+9971964 | None:intergenic |
| GGCAACCTAGAGAAAAGCCT+TGG | 0.571018 | 3_1:+9968579 | None:intergenic |
| GATAATCATGAGGCTAATGC+CGG | 0.573850 | 3_1:-9968231 | Msa0348090:CDS |
| ATCTATGGCGATAGAACCCA+AGG | 0.577922 | 3_1:-9968985 | Msa0348090:CDS |
| GAATTTCAACCTACCATCAA+AGG | 0.580977 | 3_1:-9967941 | Msa0348090:CDS |
| ATGAGTCTTGAAGTCGGAAG+CGG | 0.581253 | 3_1:+9968638 | None:intergenic |
| AAAGAGTTCAGCTTTACCAC+TGG | 0.582690 | 3_1:+9968815 | None:intergenic |
| ATATCAATATGCCAAAAGAA+AGG | 0.583824 | 3_1:-9967800 | Msa0348090:CDS |
| TTAAGCCCATTCCACATTTG+GGG | 0.584028 | 3_1:-9968777 | Msa0348090:CDS |
| ACTCTTCTGTTTACCAGGAG+AGG | 0.585563 | 3_1:-9968176 | Msa0348090:CDS |
| CAAAACCCAAAACTCCAATC+GGG | 0.590229 | 3_1:+9971667 | None:intergenic |
| AGTTTCAGGAAAGTGTATGC+AGG | 0.591837 | 3_1:+9968371 | None:intergenic |
| TCTCAAGAAATACTAAACCT+AGG | 0.592780 | 3_1:-9968449 | Msa0348090:CDS |
| GTACACGAAGCCTCAACCCA+AGG | 0.606275 | 3_1:+9971624 | None:intergenic |
| CCAACAGTTCCTGATTTGGA+AGG | 0.609446 | 3_1:-9968894 | Msa0348090:CDS |
| GAGTAGCATCTGACTCAAAG+AGG | 0.612627 | 3_1:+9969022 | None:intergenic |
| TTCATCGAAGGGAATAACCT+CGG | 0.618352 | 3_1:+9971845 | None:intergenic |
| AATATGCCAAAAGAAAGGTA+TGG | 0.623003 | 3_1:-9967795 | Msa0348090:CDS |
| TAGCATAATCTTCACTGATG+AGG | 0.627648 | 3_1:-9968349 | Msa0348090:CDS |
| CTTCCATTCTGATAATCATG+AGG | 0.635887 | 3_1:-9968241 | Msa0348090:CDS |
| ATGGTAGGTTGAAATTCTTG+GGG | 0.638122 | 3_1:+9967947 | None:intergenic |
| ATCAGGTCATATCTGACCGA+GGG | 0.640083 | 3_1:-9968956 | Msa0348090:CDS |
| AGGCTGCAACGAAGTTGTGA+TGG | 0.640538 | 3_1:-9968156 | Msa0348090:CDS |
| GACCAAATGAGTCTTGAAGT+CGG | 0.648590 | 3_1:+9968632 | None:intergenic |
| ATGAGAGTGAGACGCCGAGG+TGG | 0.656378 | 3_1:+9971913 | None:intergenic |
| CAAATAACCTAAGTGCAGAA+CGG | 0.664388 | 3_1:+9971781 | None:intergenic |
| CCAGAGGTTCCAACTACCAG+TGG | 0.669521 | 3_1:-9968831 | Msa0348090:CDS |
| CGGGTCATAACGAAGAGGAG+AGG | 0.685231 | 3_1:-9971719 | Msa0348090:CDS |
| CATCAGGTCATATCTGACCG+AGG | 0.696941 | 3_1:-9968957 | Msa0348090:CDS |
| AGAATGAGAGTGAGACGCCG+AGG | 0.699407 | 3_1:+9971910 | None:intergenic |
| TATAACGGGTCATAACGAAG+AGG | 0.722420 | 3_1:-9971724 | Msa0348090:CDS |
| AAAGAGGAGACAATGTACCA+AGG | 0.732791 | 3_1:-9968596 | Msa0348090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTCTTTTTTTTTTAA+CGG | + | chr3_1:9969853-9969872 | None:intergenic | 10.0% |
| !!! | TCTAATATATTTTTAAATCT+CGG | + | chr3_1:9970894-9970913 | None:intergenic | 10.0% |
| !! | TATTTATTATTATGGAAAAC+AGG | - | chr3_1:9968397-9968416 | Msa0348090:CDS | 15.0% |
| !! | ATTTATTATTATGGAAAACA+GGG | - | chr3_1:9968398-9968417 | Msa0348090:CDS | 15.0% |
| !! | TTAATAAAATAGAGTATAGT+TGG | - | chr3_1:9969064-9969083 | Msa0348090:intron | 15.0% |
| !!! | TTCTTGTATAACAATTTTTT+GGG | - | chr3_1:9970202-9970221 | Msa0348090:intron | 15.0% |
| !!! | ATATTTTCCATTTCAAATTA+TGG | + | chr3_1:9970435-9970454 | None:intergenic | 15.0% |
| !!! | AAGTTTTTAATATCAAACAT+AGG | + | chr3_1:9970528-9970547 | None:intergenic | 15.0% |
| !! | TTTAAAAATATATTAGAGCA+TGG | - | chr3_1:9970897-9970916 | Msa0348090:intron | 15.0% |
| !!! | GTACTTTGTTTTTAATCTTT+TGG | - | chr3_1:9968108-9968127 | Msa0348090:CDS | 20.0% |
| !! | TGTAATTGTGAGAAAAAATT+CGG | - | chr3_1:9968369-9968388 | Msa0348090:CDS | 20.0% |
| !! | CGGGTAATTATTTATTATTA+TGG | - | chr3_1:9968389-9968408 | Msa0348090:CDS | 20.0% |
| !!! | GTACTAAGTTTTTTTTGATA+AGG | + | chr3_1:9969015-9969034 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTCCTTTTTGTA+AGG | - | chr3_1:9969649-9969668 | Msa0348090:intron | 20.0% |
| !!! | TTATGTTTTCCTTTTTGTAA+GGG | - | chr3_1:9969650-9969669 | Msa0348090:intron | 20.0% |
| !!! | GTTCTTGTATAACAATTTTT+TGG | - | chr3_1:9970201-9970220 | Msa0348090:intron | 20.0% |
| !! | TTTGATAAAAAGGAAAAGTT+GGG | + | chr3_1:9970228-9970247 | None:intergenic | 20.0% |
| !! | TGTTTGATATTAAAAACTTC+TGG | - | chr3_1:9970529-9970548 | Msa0348090:intron | 20.0% |
| !!! | GAAAGAATCTAAAATTTGAA+AGG | - | chr3_1:9970859-9970878 | Msa0348090:intron | 20.0% |
| !!! | ATATATTTTTAAATCTCGGA+CGG | + | chr3_1:9970890-9970909 | None:intergenic | 20.0% |
| !!! | AAGAATAAAATCATTTTCTG+CGG | - | chr3_1:9971520-9971539 | Msa0348090:intron | 20.0% |
| ! | TACAAAGAAGCTACAAAATT+AGG | - | chr3_1:9968086-9968105 | Msa0348090:CDS | 25.0% |
| ! | GTAATTGTGAGAAAAAATTC+GGG | - | chr3_1:9968370-9968389 | Msa0348090:CDS | 25.0% |
| !!! | CAAATTTTGACTCTTATACA+TGG | - | chr3_1:9968550-9968569 | Msa0348090:CDS | 25.0% |
| ! | ATCAATGTAAGAAAACATGT+TGG | + | chr3_1:9968612-9968631 | None:intergenic | 25.0% |
| ! | TTAGTAGTACTAAGTACTTT+AGG | + | chr3_1:9968644-9968663 | None:intergenic | 25.0% |
| ! | AAGTACTTAGTACTACTAAA+CGG | - | chr3_1:9968645-9968664 | Msa0348090:CDS | 25.0% |
| ! | AAGCAATAAAATTCAAGAGA+GGG | + | chr3_1:9968985-9969004 | None:intergenic | 25.0% |
| ! | AAAGCAATAAAATTCAAGAG+AGG | + | chr3_1:9968986-9969005 | None:intergenic | 25.0% |
| ! | TTAGTACTACTAAACAACAA+TGG | - | chr3_1:9969028-9969047 | Msa0348090:CDS | 25.0% |
| !! | AATAATCCAACATAGAGTTT+TGG | + | chr3_1:9969100-9969119 | None:intergenic | 25.0% |
| ! | ATAGAGGAAATAAAAGAGTT+AGG | - | chr3_1:9969328-9969347 | Msa0348090:intron | 25.0% |
| ! | TTAAGATGATTTCACAGAAA+TGG | - | chr3_1:9969416-9969435 | Msa0348090:intron | 25.0% |
| !! | TATGTTTTCCTTTTTGTAAG+GGG | - | chr3_1:9969651-9969670 | Msa0348090:intron | 25.0% |
| !!! | AGAAATAGATTTGTTGATGA+TGG | - | chr3_1:9969869-9969888 | Msa0348090:intron | 25.0% |
| ! | GTTTGATAAAAAGGAAAAGT+TGG | + | chr3_1:9970229-9970248 | None:intergenic | 25.0% |
| ! | TGTGATCAAGTTTGATAAAA+AGG | + | chr3_1:9970238-9970257 | None:intergenic | 25.0% |
| !! | TTTTATCAAACTTGATCACA+CGG | - | chr3_1:9970238-9970257 | Msa0348090:intron | 25.0% |
| ! | GCTTAATTATGTCAAGAAAA+TGG | + | chr3_1:9970492-9970511 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGATTATTCCAG+AGG | - | chr3_1:9970767-9970786 | Msa0348090:intron | 25.0% |
| ! | TTCAGAAATGTAGAACAAAT+GGG | + | chr3_1:9971638-9971657 | None:intergenic | 25.0% |
| ! | TTTATTAACTGTTCCTTTGA+TGG | + | chr3_1:9971689-9971708 | None:intergenic | 25.0% |
| ! | ATAAAGAAGTTCAGTGTATT+TGG | - | chr3_1:9971704-9971723 | Msa0348090:CDS | 25.0% |
| ! | ATATCAATATGCCAAAAGAA+AGG | - | chr3_1:9971814-9971833 | Msa0348090:CDS | 25.0% |
| ! | AAAACAGAAAGAAACATTGT+AGG | - | chr3_1:9971990-9972009 | Msa0348090:CDS | 25.0% |
| ! | AAACAGAAAGAAACATTGTA+GGG | - | chr3_1:9971991-9972010 | Msa0348090:CDS | 25.0% |
| ! | AATCGTTGTTGTTGTTATGA+GGG | + | chr3_1:9967653-9967672 | None:intergenic | 30.0% |
| ! | ATTAGCTCTCAACAAAATGT+GGG | + | chr3_1:9968145-9968164 | None:intergenic | 30.0% |
| ! | TATTAGCTCTCAACAAAATG+TGG | + | chr3_1:9968146-9968165 | None:intergenic | 30.0% |
| GTCAATATGTTAGTGTGTAT+CGG | - | chr3_1:9968260-9968279 | Msa0348090:CDS | 30.0% | |
| TCAATATGTTAGTGTGTATC+GGG | - | chr3_1:9968261-9968280 | Msa0348090:CDS | 30.0% | |
| ACAAAATTGATAAGAGCCTA+AGG | - | chr3_1:9968495-9968514 | Msa0348090:CDS | 30.0% | |
| !! | TTGAAATACCCTTTTTGGAA+GGG | + | chr3_1:9968699-9968718 | None:intergenic | 30.0% |
| !! | TTTGAAATACCCTTTTTGGA+AGG | + | chr3_1:9968700-9968719 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAAATACCCTTTT+TGG | + | chr3_1:9968704-9968723 | None:intergenic | 30.0% |
| !!! | AACTAAGGTTCTAGAACTTT+TGG | + | chr3_1:9968724-9968743 | None:intergenic | 30.0% |
| AGACATTCTTTAGACAACTA+AGG | + | chr3_1:9968739-9968758 | None:intergenic | 30.0% | |
| !!! | TTAGGTTCTGTTTTGATAGT+TGG | - | chr3_1:9968889-9968908 | Msa0348090:CDS | 30.0% |
| TTCTTACCAAAACTCTATGT+TGG | - | chr3_1:9969091-9969110 | Msa0348090:intron | 30.0% | |
| ! | TATAGAGATAGATTTTGCGT+TGG | - | chr3_1:9969227-9969246 | Msa0348090:intron | 30.0% |
| ! | ATAGAGATAGATTTTGCGTT+GGG | - | chr3_1:9969228-9969247 | Msa0348090:intron | 30.0% |
| TATGGGATGTATAATTGGTT+GGG | - | chr3_1:9969258-9969277 | Msa0348090:intron | 30.0% | |
| CCATTGTACATAAATCTGAT+TGG | + | chr3_1:9969299-9969318 | None:intergenic | 30.0% | |
| CCAATCAGATTTATGTACAA+TGG | - | chr3_1:9969296-9969315 | Msa0348090:intron | 30.0% | |
| ACAATGGTTAAATCAGATAG+AGG | - | chr3_1:9969312-9969331 | Msa0348090:intron | 30.0% | |
| AGTCATGTCTTTACTATGAA+TGG | - | chr3_1:9969461-9969480 | Msa0348090:intron | 30.0% | |
| GTGTGTATACTTATGTATTG+AGG | - | chr3_1:9969500-9969519 | Msa0348090:intron | 30.0% | |
| CAAACAAAATTCTGAATAGC+AGG | + | chr3_1:9969777-9969796 | None:intergenic | 30.0% | |
| TTTATCAAACTTGATCACAC+GGG | - | chr3_1:9970239-9970258 | Msa0348090:intron | 30.0% | |
| TCCTACCTAGAAACATATAA+CGG | - | chr3_1:9970357-9970376 | Msa0348090:intron | 30.0% | |
| CGATCATCCATAATTTGAAA+TGG | - | chr3_1:9970425-9970444 | Msa0348090:intron | 30.0% | |
| AACTTCTGGTGTTTATCATT+AGG | - | chr3_1:9970543-9970562 | Msa0348090:intron | 30.0% | |
| ACTCATTTGGTCGATTATAT+CGG | - | chr3_1:9970993-9971012 | Msa0348090:intron | 30.0% | |
| TCTCAAGAAATACTAAACCT+AGG | - | chr3_1:9971165-9971184 | Msa0348090:intron | 30.0% | |
| AAGTATTCGAAAAGACAATC+TGG | - | chr3_1:9971220-9971239 | Msa0348090:intron | 30.0% | |
| ATCTTTCCATATCCACTTTA+TGG | + | chr3_1:9971292-9971311 | None:intergenic | 30.0% | |
| ATTCACATGTAAAAGACTGT+TGG | + | chr3_1:9971331-9971350 | None:intergenic | 30.0% | |
| !!! | TTTATTCTTGCTGACTCTTT+TGG | + | chr3_1:9971509-9971528 | None:intergenic | 30.0% |
| ACAAGAAGCAACATATTGAT+AGG | + | chr3_1:9971570-9971589 | None:intergenic | 30.0% | |
| TCGATACCCAATTTAAAAGT+TGG | - | chr3_1:9971590-9971609 | Msa0348090:CDS | 30.0% | |
| ! | TGCTCTCCAACTTTTAAATT+GGG | + | chr3_1:9971599-9971618 | None:intergenic | 30.0% |
| ! | TTGCTCTCCAACTTTTAAAT+TGG | + | chr3_1:9971600-9971619 | None:intergenic | 30.0% |
| GTTCAGAAATGTAGAACAAA+TGG | + | chr3_1:9971639-9971658 | None:intergenic | 30.0% | |
| AATATGCCAAAAGAAAGGTA+TGG | - | chr3_1:9971819-9971838 | Msa0348090:CDS | 30.0% | |
| TTTCTTCGTTTGTGTTCAAA+AGG | + | chr3_1:9971878-9971897 | None:intergenic | 30.0% | |
| !! | TTTTTCAGACATGATTTCAG+AGG | + | chr3_1:9971950-9971969 | None:intergenic | 30.0% |
| AAAATCCAATTCCTTGAAAC+AGG | - | chr3_1:9971967-9971986 | Msa0348090:CDS | 30.0% | |
| TTCGAAAAGGTGACATAGTT+TGG | - | chr3_1:9967610-9967629 | Msa0348090:CDS | 35.0% | |
| TCGAAAAGGTGACATAGTTT+GGG | - | chr3_1:9967611-9967630 | Msa0348090:CDS | 35.0% | |
| ! | CAATCGTTGTTGTTGTTATG+AGG | + | chr3_1:9967654-9967673 | None:intergenic | 35.0% |
| CTCATAACAACAACAACGAT+TGG | - | chr3_1:9967652-9967671 | Msa0348090:CDS | 35.0% | |
| !! | AAGGTATCGTCATTTCGAAA+GGG | + | chr3_1:9967798-9967817 | None:intergenic | 35.0% |
| !! | AAAGGTATCGTCATTTCGAA+AGG | + | chr3_1:9967799-9967818 | None:intergenic | 35.0% |
| CAAATAACCTAAGTGCAGAA+CGG | + | chr3_1:9967836-9967855 | None:intergenic | 35.0% | |
| !! | TCAGAATTGTTTCGAGTTTG+CGG | - | chr3_1:9967859-9967878 | Msa0348090:CDS | 35.0% |
| TTTGCGGTGTCTTTGTATAA+CGG | - | chr3_1:9967875-9967894 | Msa0348090:CDS | 35.0% | |
| ACAAAACCCAAAACTCCAAT+CGG | + | chr3_1:9967951-9967970 | None:intergenic | 35.0% | |
| CTTCTTTGTAGAGTTTCTTC+TGG | + | chr3_1:9968076-9968095 | None:intergenic | 35.0% | |
| CAATATGTTAGTGTGTATCG+GGG | - | chr3_1:9968262-9968281 | Msa0348090:CDS | 35.0% | |
| TGTGTATCGGGGTAATTATT+GGG | - | chr3_1:9968273-9968292 | Msa0348090:CDS | 35.0% | |
| ! | GGGGTAATTATTGGGAATTT+TGG | - | chr3_1:9968281-9968300 | Msa0348090:CDS | 35.0% |
| AATTTGTCTACAGACATCTG+TGG | - | chr3_1:9968425-9968444 | Msa0348090:CDS | 35.0% | |
| GATAAGAGTTTAACAGCATG+TGG | - | chr3_1:9968467-9968486 | Msa0348090:CDS | 35.0% | |
| ! | TTTAAAGTGCCAAACTCCTT+AGG | + | chr3_1:9968514-9968533 | None:intergenic | 35.0% |
| AGTTTGGCACTTTAAACAAG+TGG | - | chr3_1:9968518-9968537 | Msa0348090:CDS | 35.0% | |
| ! | GTACTACTAAACGGATTCAA+CGG | - | chr3_1:9968654-9968673 | Msa0348090:CDS | 35.0% |
| !! | TGAAATACCCTTTTTGGAAG+GGG | + | chr3_1:9968698-9968717 | None:intergenic | 35.0% |
| ! | TTCTTTTGCTCCTGTGTAAA+AGG | - | chr3_1:9968758-9968777 | Msa0348090:CDS | 35.0% |
| ! | TCTTTTGCTCCTGTGTAAAA+GGG | - | chr3_1:9968759-9968778 | Msa0348090:CDS | 35.0% |
| TCAGCAGGAAAAAGAAGAAT+AGG | - | chr3_1:9968784-9968803 | Msa0348090:CDS | 35.0% | |
| AATAGGTTGCAACAAGCTAA+CGG | - | chr3_1:9968801-9968820 | Msa0348090:CDS | 35.0% | |
| AATTCGAACTCGTTCTCAAA+AGG | - | chr3_1:9968839-9968858 | Msa0348090:CDS | 35.0% | |
| AAGCTAGCAAAAACTGTCTT+TGG | + | chr3_1:9968871-9968890 | None:intergenic | 35.0% | |
| !! | AAGACAGTTTTTGCTAGCTT+AGG | - | chr3_1:9968871-9968890 | Msa0348090:CDS | 35.0% |
| ! | TTTGTGCAATTTTTGCACTC+TGG | - | chr3_1:9968942-9968961 | Msa0348090:CDS | 35.0% |
| ! | TAGAGATAGATTTTGCGTTG+GGG | - | chr3_1:9969229-9969248 | Msa0348090:intron | 35.0% |
| TCTGGTATGGGATGTATAAT+TGG | - | chr3_1:9969253-9969272 | Msa0348090:intron | 35.0% | |
| GTATGGGATGTATAATTGGT+TGG | - | chr3_1:9969257-9969276 | Msa0348090:intron | 35.0% | |
| !! | TAATTGGTTGGGACTTGTTT+TGG | - | chr3_1:9969269-9969288 | Msa0348090:intron | 35.0% |
| GTCTTTACTATGAATGGTGT+TGG | - | chr3_1:9969467-9969486 | Msa0348090:intron | 35.0% | |
| CATAAGTATACACACAGTGA+AGG | + | chr3_1:9969495-9969514 | None:intergenic | 35.0% | |
| TAACAACAGACAGACAATCA+AGG | + | chr3_1:9969573-9969592 | None:intergenic | 35.0% | |
| TTAATTCTGTGACCTGCTAA+GGG | - | chr3_1:9969680-9969699 | Msa0348090:intron | 35.0% | |
| !!! | ATCAGAAGTTTTAGCTACAG+TGG | - | chr3_1:9969722-9969741 | Msa0348090:intron | 35.0% |
| AGCTCCTTATCATGTCAAAA+AGG | - | chr3_1:9969899-9969918 | Msa0348090:intron | 35.0% | |
| ! | AGTGCCTTTTTGACATGATA+AGG | + | chr3_1:9969906-9969925 | None:intergenic | 35.0% |
| ! | TTATCATGTCAAAAAGGCAC+TGG | - | chr3_1:9969905-9969924 | Msa0348090:intron | 35.0% |
| AGCAAAGAAGTAGAACCATA+CGG | - | chr3_1:9970172-9970191 | Msa0348090:intron | 35.0% | |
| AAAACTCGGTTGAAATTGTG+TGG | + | chr3_1:9970296-9970315 | None:intergenic | 35.0% | |
| TCACATACATACTCAGCTTT+GGG | + | chr3_1:9970319-9970338 | None:intergenic | 35.0% | |
| ATCACATACATACTCAGCTT+TGG | + | chr3_1:9970320-9970339 | None:intergenic | 35.0% | |
| !! | TCCGTTATATGTTTCTAGGT+AGG | + | chr3_1:9970361-9970380 | None:intergenic | 35.0% |
| CTAGTCCGTTATATGTTTCT+AGG | + | chr3_1:9970365-9970384 | None:intergenic | 35.0% | |
| ATGGTTAACAAACTCACAAG+TGG | + | chr3_1:9970397-9970416 | None:intergenic | 35.0% | |
| ! | ATGACCTGATGTTTTTCCTT+GGG | + | chr3_1:9970648-9970667 | None:intergenic | 35.0% |
| ! | TATGACCTGATGTTTTTCCT+TGG | + | chr3_1:9970649-9970668 | None:intergenic | 35.0% |
| CAATCTTCTTATAGCACCAA+TGG | + | chr3_1:9970697-9970716 | None:intergenic | 35.0% | |
| TTAGATTCTTTCCCCAAATG+TGG | + | chr3_1:9970851-9970870 | None:intergenic | 35.0% | |
| CATATAGTGGTTTCTATGTC+AGG | + | chr3_1:9971059-9971078 | None:intergenic | 35.0% | |
| ! | TTTTCTGTTGAGGCATATAG+TGG | + | chr3_1:9971072-9971091 | None:intergenic | 35.0% |
| TATGCCTCAACAGAAAAAGA+AGG | - | chr3_1:9971075-9971094 | Msa0348090:intron | 35.0% | |
| GGACATAAAGCATGTTTATC+TGG | + | chr3_1:9971104-9971123 | None:intergenic | 35.0% | |
| ! | GTGAAGATTATGCTAGTTTC+AGG | + | chr3_1:9971260-9971279 | None:intergenic | 35.0% |
| TAGCATAATCTTCACTGATG+AGG | - | chr3_1:9971265-9971284 | Msa0348090:intron | 35.0% | |
| CTTCCATTCTGATAATCATG+AGG | - | chr3_1:9971373-9971392 | Msa0348090:intron | 35.0% | |
| TAGCCTCATGATTATCAGAA+TGG | + | chr3_1:9971379-9971398 | None:intergenic | 35.0% | |
| !! | AGATTTTACTTTTGCTGCAC+CGG | + | chr3_1:9971405-9971424 | None:intergenic | 35.0% |
| ATCTAACTCTTCTGTTTACC+AGG | - | chr3_1:9971433-9971452 | Msa0348090:intron | 35.0% | |
| TTAAAAGTTGGAGAGCAATC+AGG | - | chr3_1:9971602-9971621 | Msa0348090:CDS | 35.0% | |
| ! | ATGGTAGGTTGAAATTCTTG+GGG | + | chr3_1:9971670-9971689 | None:intergenic | 35.0% |
| ! | GATGGTAGGTTGAAATTCTT+GGG | + | chr3_1:9971671-9971690 | None:intergenic | 35.0% |
| ! | TGATGGTAGGTTGAAATTCT+TGG | + | chr3_1:9971672-9971691 | None:intergenic | 35.0% |
| GAATTTCAACCTACCATCAA+AGG | - | chr3_1:9971673-9971692 | Msa0348090:CDS | 35.0% | |
| ! | TTAACTGTTCCTTTGATGGT+AGG | + | chr3_1:9971685-9971704 | None:intergenic | 35.0% |
| ! | ACAAGTGTCTTTTGTTACAC+TGG | - | chr3_1:9971746-9971765 | Msa0348090:CDS | 35.0% |
| ! | ACCAAACCATACCTTTCTTT+TGG | + | chr3_1:9971828-9971847 | None:intergenic | 35.0% |
| ! | GTTTTCCTGTTTCAAGGAAT+TGG | + | chr3_1:9971975-9971994 | None:intergenic | 35.0% |
| ! | CTTTCTGTTTTCCTGTTTCA+AGG | + | chr3_1:9971981-9972000 | None:intergenic | 35.0% |
| TTCATCGAAGGGAATAACCT+CGG | + | chr3_1:9967772-9967791 | None:intergenic | 40.0% | |
| CGAAAGGGTAATTCATCGAA+GGG | + | chr3_1:9967783-9967802 | None:intergenic | 40.0% | |
| TCGAAAGGGTAATTCATCGA+AGG | + | chr3_1:9967784-9967803 | None:intergenic | 40.0% | |
| CGTTCTGCACTTAGGTTATT+TGG | - | chr3_1:9967834-9967853 | Msa0348090:CDS | 40.0% | |
| TTGCGGTGTCTTTGTATAAC+GGG | - | chr3_1:9967876-9967895 | Msa0348090:CDS | 40.0% | |
| !! | TATAACGGGTCATAACGAAG+AGG | - | chr3_1:9967890-9967909 | Msa0348090:CDS | 40.0% |
| ! | TTTGACCCGATTGGAGTTTT+GGG | - | chr3_1:9967942-9967961 | Msa0348090:CDS | 40.0% |
| CAAAACCCAAAACTCCAATC+GGG | + | chr3_1:9967950-9967969 | None:intergenic | 40.0% | |
| GTAGAGTTTCTTCTGGTGAA+TGG | + | chr3_1:9968069-9968088 | None:intergenic | 40.0% | |
| ! | CACTTGTCGATTAAAAGCGT+CGG | + | chr3_1:9968200-9968219 | None:intergenic | 40.0% |
| GTGTGTATCGGGGTAATTAT+TGG | - | chr3_1:9968272-9968291 | Msa0348090:CDS | 40.0% | |
| TGATAAGAGCCTAAGGAGTT+TGG | - | chr3_1:9968502-9968521 | Msa0348090:CDS | 40.0% | |
| GCACTTTAAACAAGTGGTCA+TGG | - | chr3_1:9968524-9968543 | Msa0348090:CDS | 40.0% | |
| TATCATCACCCCTTCCAAAA+AGG | - | chr3_1:9968687-9968706 | Msa0348090:CDS | 40.0% | |
| ATCATCACCCCTTCCAAAAA+GGG | - | chr3_1:9968688-9968707 | Msa0348090:CDS | 40.0% | |
| GCTAACGGTACAAACACAAA+TGG | - | chr3_1:9968816-9968835 | Msa0348090:CDS | 40.0% | |
| !! | TTTTGATAGTTGGCCTGTTG+TGG | - | chr3_1:9968899-9968918 | Msa0348090:CDS | 40.0% |
| ! | AAGACAAGTATTGCCACAAC+AGG | + | chr3_1:9968915-9968934 | None:intergenic | 40.0% |
| ! | TTTTGCACTCTGGCTGTATA+AGG | - | chr3_1:9968952-9968971 | Msa0348090:CDS | 40.0% |
| TTTGCACTCTGGCTGTATAA+GGG | - | chr3_1:9968953-9968972 | Msa0348090:CDS | 40.0% | |
| ! | ACTTTTTGCACAGTCTACTC+GGG | + | chr3_1:9969444-9969463 | None:intergenic | 40.0% |
| ! | GACTTTTTGCACAGTCTACT+CGG | + | chr3_1:9969445-9969464 | None:intergenic | 40.0% |
| TTATGTATTGAGGTCTGCTG+TGG | - | chr3_1:9969510-9969529 | Msa0348090:intron | 40.0% | |
| TATGTATTGAGGTCTGCTGT+GGG | - | chr3_1:9969511-9969530 | Msa0348090:intron | 40.0% | |
| ! | GTCTGTAGTGGTTTGTGTTT+AGG | - | chr3_1:9969623-9969642 | Msa0348090:intron | 40.0% |
| GTTAATTCTGTGACCTGCTA+AGG | - | chr3_1:9969679-9969698 | Msa0348090:intron | 40.0% | |
| TAATTCTGTGACCTGCTAAG+GGG | - | chr3_1:9969681-9969700 | Msa0348090:intron | 40.0% | |
| TCTCTTGTGTAGTAATGCAG+AGG | - | chr3_1:9969981-9970000 | Msa0348090:intron | 40.0% | |
| ! | AATGCAGAGGTATGTTCATG+TGG | - | chr3_1:9969994-9970013 | Msa0348090:intron | 40.0% |
| ACAATACTGTCTTCACGAGT+AGG | - | chr3_1:9970098-9970117 | Msa0348090:intron | 40.0% | |
| TACAAGAACATGTCACCGTA+TGG | + | chr3_1:9970190-9970209 | None:intergenic | 40.0% | |
| !! | TACTCAGCTTTGGGAAAACT+CGG | + | chr3_1:9970310-9970329 | None:intergenic | 40.0% |
| CTCAGTTACTCGAGAATCTA+TGG | - | chr3_1:9970614-9970633 | Msa0348090:intron | 40.0% | |
| AGAACCCAAGGAAAAACATC+AGG | - | chr3_1:9970641-9970660 | Msa0348090:intron | 40.0% | |
| AGAGAATGTCCTTCCAAATC+AGG | + | chr3_1:9970732-9970751 | None:intergenic | 40.0% | |
| AAAGAGTTCAGCTTTACCAC+TGG | + | chr3_1:9970802-9970821 | None:intergenic | 40.0% | |
| CTTAAGCCCATTCCACATTT+GGG | - | chr3_1:9970836-9970855 | Msa0348090:intron | 40.0% | |
| TTAAGCCCATTCCACATTTG+GGG | - | chr3_1:9970837-9970856 | Msa0348090:intron | 40.0% | |
| TCTTTCCCCAAATGTGGAAT+GGG | + | chr3_1:9970845-9970864 | None:intergenic | 40.0% | |
| TTCTTTCCCCAAATGTGGAA+TGG | + | chr3_1:9970846-9970865 | None:intergenic | 40.0% | |
| TTCCGACTTCAAGACTCATT+TGG | - | chr3_1:9970980-9970999 | Msa0348090:intron | 40.0% | |
| GACCAAATGAGTCTTGAAGT+CGG | + | chr3_1:9970985-9971004 | None:intergenic | 40.0% | |
| GTCGATTATATCGGTGAAAG+AGG | - | chr3_1:9971002-9971021 | Msa0348090:intron | 40.0% | |
| AAAGAGGAGACAATGTACCA+AGG | - | chr3_1:9971018-9971037 | Msa0348090:intron | 40.0% | |
| ! | ATGTACCAAGGCTTTTCTCT+AGG | - | chr3_1:9971030-9971049 | Msa0348090:intron | 40.0% |
| ! | AGTTTCAGGAAAGTGTATGC+AGG | + | chr3_1:9971246-9971265 | None:intergenic | 40.0% |
| TGAGGTCCATAAAGTGGATA+TGG | - | chr3_1:9971283-9971302 | Msa0348090:intron | 40.0% | |
| GATAATCATGAGGCTAATGC+CGG | - | chr3_1:9971383-9971402 | Msa0348090:intron | 40.0% | |
| ! | GCCAAAAGAAAGGTATGGTT+TGG | - | chr3_1:9971824-9971843 | Msa0348090:CDS | 40.0% |
| CAAAAGGATCTAGCCAAAAC+CGG | + | chr3_1:9971862-9971881 | None:intergenic | 40.0% | |
| !!! | GATCCTGTTAGTTTTGCTGA+GGG | + | chr3_1:9971926-9971945 | None:intergenic | 40.0% |
| !!! | TGATCCTGTTAGTTTTGCTG+AGG | + | chr3_1:9971927-9971946 | None:intergenic | 40.0% |
| !! | CAACAACAACGATTGGTCTC+CGG | - | chr3_1:9967659-9967678 | Msa0348090:CDS | 45.0% |
| AACCTCGGATTCGACGAAAA+AGG | + | chr3_1:9967757-9967776 | None:intergenic | 45.0% | |
| ACGGAACGCTTCACATTGAA+AGG | + | chr3_1:9967817-9967836 | None:intergenic | 45.0% | |
| ! | GAAGAGGAGAGGGTTTTACA+TGG | - | chr3_1:9967906-9967925 | Msa0348090:CDS | 45.0% |
| ! | GGAGAGGGTTTTACATGGAT+CGG | - | chr3_1:9967911-9967930 | Msa0348090:CDS | 45.0% |
| ! | GAGAGGGTTTTACATGGATC+GGG | - | chr3_1:9967912-9967931 | Msa0348090:CDS | 45.0% |
| GGTTATCAGTTTGACCCGAT+TGG | - | chr3_1:9967933-9967952 | Msa0348090:CDS | 45.0% | |
| ! | GTTTGACCCGATTGGAGTTT+TGG | - | chr3_1:9967941-9967960 | Msa0348090:CDS | 45.0% |
| !!! | TTGATGCTGCTGTTTTGCCT+TGG | - | chr3_1:9967973-9967992 | Msa0348090:CDS | 45.0% |
| !!! | TGATGCTGCTGTTTTGCCTT+GGG | - | chr3_1:9967974-9967993 | Msa0348090:CDS | 45.0% |
| ! | AACGGATTCAACGGATTCAG+AGG | - | chr3_1:9968663-9968682 | Msa0348090:CDS | 45.0% |
| ! | ACGGATTCAACGGATTCAGA+GGG | - | chr3_1:9968664-9968683 | Msa0348090:CDS | 45.0% |
| ! | CTGCTGAAACCCTTTTACAC+AGG | + | chr3_1:9968771-9968790 | None:intergenic | 45.0% |
| CTGTGTAAAAGGGTTTCAGC+AGG | - | chr3_1:9968769-9968788 | Msa0348090:CDS | 45.0% | |
| TCGAACTCGTTCTCAAAAGG+AGG | - | chr3_1:9968842-9968861 | Msa0348090:CDS | 45.0% | |
| ! | TAGATTTTGCGTTGGGGATC+TGG | - | chr3_1:9969235-9969254 | Msa0348090:intron | 45.0% |
| CTCTAATGTGAACTGCTGTG+CGG | - | chr3_1:9969375-9969394 | Msa0348090:intron | 45.0% | |
| ATGTATTGAGGTCTGCTGTG+GGG | - | chr3_1:9969512-9969531 | Msa0348090:intron | 45.0% | |
| TCCTGAAGGACTATGGCAAA+GGG | + | chr3_1:9969597-9969616 | None:intergenic | 45.0% | |
| ATCCTGAAGGACTATGGCAA+AGG | + | chr3_1:9969598-9969617 | None:intergenic | 45.0% | |
| AACACAAACCACTACAGACC+TGG | + | chr3_1:9969622-9969641 | None:intergenic | 45.0% | |
| AACAGCTGCCCCTTACAAAA+AGG | + | chr3_1:9969662-9969681 | None:intergenic | 45.0% | |
| AATTCTGTGACCTGCTAAGG+GGG | - | chr3_1:9969682-9969701 | Msa0348090:intron | 45.0% | |
| ACAGGGATGCAGAAGAAAGA+TGG | - | chr3_1:9969947-9969966 | Msa0348090:intron | 45.0% | |
| GGATGCAGAAGAAAGATGGA+GGG | - | chr3_1:9969951-9969970 | Msa0348090:intron | 45.0% | |
| GCAGTGTATCATGAGTGAAC+AGG | - | chr3_1:9970021-9970040 | Msa0348090:intron | 45.0% | |
| TACTGTCTTCACGAGTAGGA+TGG | - | chr3_1:9970102-9970121 | Msa0348090:intron | 45.0% | |
| ACTGTCTTCACGAGTAGGAT+GGG | - | chr3_1:9970103-9970122 | Msa0348090:intron | 45.0% | |
| TAGGATGGGAATGATGGCAA+GGG | - | chr3_1:9970117-9970136 | Msa0348090:intron | 45.0% | |
| !! | TTGGCAGGGAAGTATTGAGA+TGG | - | chr3_1:9970149-9970168 | Msa0348090:intron | 45.0% |
| ATGGATGATCGTCACAAGCA+TGG | + | chr3_1:9970416-9970435 | None:intergenic | 45.0% | |
| GAGTAGCATCTGACTCAAAG+AGG | + | chr3_1:9970595-9970614 | None:intergenic | 45.0% | |
| ATCTATGGCGATAGAACCCA+AGG | - | chr3_1:9970629-9970648 | Msa0348090:intron | 45.0% | |
| ATCAGGTCATATCTGACCGA+GGG | - | chr3_1:9970658-9970677 | Msa0348090:intron | 45.0% | |
| ! | TGGTCATGTTTTTCTGCCCT+CGG | + | chr3_1:9970677-9970696 | None:intergenic | 45.0% |
| GGGCAGAAAAACATGACCAT+TGG | - | chr3_1:9970678-9970697 | Msa0348090:intron | 45.0% | |
| GAAGCCAACAGTTCCTGATT+TGG | - | chr3_1:9970716-9970735 | Msa0348090:intron | 45.0% | |
| CCTTCCAAATCAGGAACTGT+TGG | + | chr3_1:9970723-9970742 | None:intergenic | 45.0% | |
| !! | CCAACAGTTCCTGATTTGGA+AGG | - | chr3_1:9970720-9970739 | Msa0348090:intron | 45.0% |
| TCAGCTTTACCACTGGTAGT+TGG | + | chr3_1:9970795-9970814 | None:intergenic | 45.0% | |
| ! | CCAAATGTGGAATGGGCTTA+AGG | + | chr3_1:9970838-9970857 | None:intergenic | 45.0% |
| CCTTAAGCCCATTCCACATT+TGG | - | chr3_1:9970835-9970854 | Msa0348090:intron | 45.0% | |
| ATGAGTCTTGAAGTCGGAAG+CGG | + | chr3_1:9970979-9970998 | None:intergenic | 45.0% | |
| ! | GTCGCCTTCTTTTTCTGTTG+AGG | + | chr3_1:9971082-9971101 | None:intergenic | 45.0% |
| TCTTGAGCTCTGCAAAGTTG+AGG | + | chr3_1:9971125-9971144 | None:intergenic | 45.0% | |
| ! | GTACTGATGTGTGAGATCCT+AGG | + | chr3_1:9971185-9971204 | None:intergenic | 45.0% |
| CACTGATGAGGTCCATAAAG+TGG | - | chr3_1:9971277-9971296 | Msa0348090:intron | 45.0% | |
| TCATCTCCTAGTTTAGCGTC+TGG | - | chr3_1:9971350-9971369 | Msa0348090:intron | 45.0% | |
| ACTCTTCTGTTTACCAGGAG+AGG | - | chr3_1:9971438-9971457 | Msa0348090:intron | 45.0% | |
| !!! | GCTGACTCTTTTGGCTTAAG+AGG | + | chr3_1:9971500-9971519 | None:intergenic | 45.0% |
| ! | TTCTGCGGATCGTTTGTTAG+AGG | - | chr3_1:9971535-9971554 | Msa0348090:CDS | 45.0% |
| ! | TCTGCGGATCGTTTGTTAGA+GGG | - | chr3_1:9971536-9971555 | Msa0348090:CDS | 45.0% |
| !! | AAGGTATGGTTTGGTGATGC+TGG | - | chr3_1:9971833-9971852 | Msa0348090:CDS | 45.0% |
| CATCCCTCAGCAAAACTAAC+AGG | - | chr3_1:9971920-9971939 | Msa0348090:CDS | 45.0% | |
| CTGGAAGATGTGACCAAAGC+CGG | + | chr3_1:9967681-9967700 | None:intergenic | 50.0% | |
| ! | GACGAAAAAGGTGCGTTGTG+GGG | + | chr3_1:9967745-9967764 | None:intergenic | 50.0% |
| ! | CGACGAAAAAGGTGCGTTGT+GGG | + | chr3_1:9967746-9967765 | None:intergenic | 50.0% |
| ! | TCGACGAAAAAGGTGCGTTG+TGG | + | chr3_1:9967747-9967766 | None:intergenic | 50.0% |
| !! | CACCTTTTTCGTCGAATCCG+AGG | - | chr3_1:9967752-9967771 | Msa0348090:CDS | 50.0% |
| AAGCGTTCCGTTCTGCACTT+AGG | - | chr3_1:9967826-9967845 | Msa0348090:CDS | 50.0% | |
| GGGTCATAACGAAGAGGAGA+GGG | - | chr3_1:9967896-9967915 | Msa0348090:CDS | 50.0% | |
| !!! | TGCTGTTTTGCCTTGGGTTG+AGG | - | chr3_1:9967980-9967999 | Msa0348090:CDS | 50.0% |
| GTTGAGGCTTCGTGTACTGT+TGG | - | chr3_1:9967996-9968015 | Msa0348090:CDS | 50.0% | |
| GTGTTGTGTCGTGTCAGTGT+AGG | + | chr3_1:9968230-9968249 | None:intergenic | 50.0% | |
| TTTGCGTTGGGGATCTGGTA+TGG | - | chr3_1:9969240-9969259 | Msa0348090:intron | 50.0% | |
| TTGCGTTGGGGATCTGGTAT+GGG | - | chr3_1:9969241-9969260 | Msa0348090:intron | 50.0% | |
| !! | GCTGATTGGTGGCTGTGTTT+TGG | - | chr3_1:9969541-9969560 | Msa0348090:intron | 50.0% |
| CCTGAAGGACTATGGCAAAG+GGG | + | chr3_1:9969596-9969615 | None:intergenic | 50.0% | |
| !! | CTGGTAAAGCACTGAGTCGT+AGG | - | chr3_1:9969924-9969943 | Msa0348090:intron | 50.0% |
| !! | AAAGCACTGAGTCGTAGGAC+AGG | - | chr3_1:9969929-9969948 | Msa0348090:intron | 50.0% |
| !! | AAGCACTGAGTCGTAGGACA+GGG | - | chr3_1:9969930-9969949 | Msa0348090:intron | 50.0% |
| GGGATGCAGAAGAAAGATGG+AGG | - | chr3_1:9969950-9969969 | Msa0348090:intron | 50.0% | |
| TCGACAGTGTCTGTTCACTG+AGG | - | chr3_1:9970049-9970068 | Msa0348090:intron | 50.0% | |
| TCACTCTTTCAGCGATGACC+CGG | + | chr3_1:9970078-9970097 | None:intergenic | 50.0% | |
| CACGAGTAGGATGGGAATGA+TGG | - | chr3_1:9970111-9970130 | Msa0348090:intron | 50.0% | |
| GTAGGATGGGAATGATGGCA+AGG | - | chr3_1:9970116-9970135 | Msa0348090:intron | 50.0% | |
| ATGGGAATGATGGCAAGGGT+GGG | - | chr3_1:9970121-9970140 | Msa0348090:intron | 50.0% | |
| ! | AATGATGGCAAGGGTGGGTT+TGG | - | chr3_1:9970126-9970145 | Msa0348090:intron | 50.0% |
| CATCAGGTCATATCTGACCG+AGG | - | chr3_1:9970657-9970676 | Msa0348090:intron | 50.0% | |
| ! | ATGTGGAATGGGCTTAAGGC+AGG | + | chr3_1:9970834-9970853 | None:intergenic | 50.0% |
| GGCAACCTAGAGAAAAGCCT+TGG | + | chr3_1:9971038-9971057 | None:intergenic | 50.0% | |
| TGGAAGCCAGACGCTAAACT+AGG | + | chr3_1:9971359-9971378 | None:intergenic | 50.0% | |
| AGGCTGCAACGAAGTTGTGA+TGG | - | chr3_1:9971458-9971477 | Msa0348090:intron | 50.0% | |
| !! | TTGTTACACTGGCTCAGCTC+AGG | - | chr3_1:9971757-9971776 | Msa0348090:CDS | 50.0% |
| !! | GGTTTGGTGATGCTGGTATC+CGG | - | chr3_1:9971840-9971859 | Msa0348090:CDS | 50.0% |
| ! | GTGATGCTGGTATCCGGTTT+TGG | - | chr3_1:9971846-9971865 | Msa0348090:CDS | 50.0% |
| !! | CAACGATTGGTCTCCGGCTT+TGG | - | chr3_1:9967665-9967684 | Msa0348090:CDS | 55.0% |
| GTCACATCTTCCAGCCACCT+CGG | - | chr3_1:9967687-9967706 | Msa0348090:CDS | 55.0% | |
| AGAATGAGAGTGAGACGCCG+AGG | + | chr3_1:9967707-9967726 | None:intergenic | 55.0% | |
| ! | AGGTGCGTTGTGGGGTGTTA+GGG | + | chr3_1:9967737-9967756 | None:intergenic | 55.0% |
| ! | AAGGTGCGTTGTGGGGTGTT+AGG | + | chr3_1:9967738-9967757 | None:intergenic | 55.0% |
| CGGGTCATAACGAAGAGGAG+AGG | - | chr3_1:9967895-9967914 | Msa0348090:CDS | 55.0% | |
| GTACACGAAGCCTCAACCCA+AGG | + | chr3_1:9967993-9968012 | None:intergenic | 55.0% | |
| ATTGAGGTCTGCTGTGGGGT+CGG | - | chr3_1:9969516-9969535 | Msa0348090:intron | 55.0% | |
| CCCCTTTGCCATAGTCCTTC+AGG | - | chr3_1:9969593-9969612 | Msa0348090:intron | 55.0% | |
| CCTGGCATCCTGAAGGACTA+TGG | + | chr3_1:9969604-9969623 | None:intergenic | 55.0% | |
| CCATAGTCCTTCAGGATGCC+AGG | - | chr3_1:9969601-9969620 | Msa0348090:intron | 55.0% | |
| CTACAGACCTGGCATCCTGA+AGG | + | chr3_1:9969611-9969630 | None:intergenic | 55.0% | |
| TCAGGATGCCAGGTCTGTAG+TGG | - | chr3_1:9969611-9969630 | Msa0348090:intron | 55.0% | |
| !!! | GACCTGCTAAGGGGGTGTTT+TGG | - | chr3_1:9969690-9969709 | Msa0348090:intron | 55.0% |
| CTCCAAAACACCCCCTTAGC+AGG | + | chr3_1:9969695-9969714 | None:intergenic | 55.0% | |
| TGTCTGTTCACTGAGGCCAC+CGG | - | chr3_1:9970056-9970075 | Msa0348090:intron | 55.0% | |
| GATGGGAATGATGGCAAGGG+TGG | - | chr3_1:9970120-9970139 | Msa0348090:intron | 55.0% | |
| ! | ATGGCAAGGGTGGGTTTGGT+TGG | - | chr3_1:9970130-9970149 | Msa0348090:intron | 55.0% |
| ! | AAGGGTGGGTTTGGTTGGCA+GGG | - | chr3_1:9970135-9970154 | Msa0348090:intron | 55.0% |
| CCACTGGTAGTTGGAACCTC+TGG | + | chr3_1:9970786-9970805 | None:intergenic | 55.0% | |
| CCAGAGGTTCCAACTACCAG+TGG | - | chr3_1:9970783-9970802 | Msa0348090:intron | 55.0% | |
| AACTTCGTTGCAGCCTCTCC+TGG | + | chr3_1:9971454-9971473 | None:intergenic | 55.0% | |
| !! | TTACACTGGCTCAGCTCAGG+TGG | - | chr3_1:9971760-9971779 | Msa0348090:CDS | 55.0% |
| ATGAGAGTGAGACGCCGAGG+TGG | + | chr3_1:9967704-9967723 | None:intergenic | 60.0% | |
| GTCTGTTCACTGAGGCCACC+GGG | - | chr3_1:9970057-9970076 | Msa0348090:intron | 60.0% | |
| CTCTTTCAGCGATGACCCGG+TGG | + | chr3_1:9970075-9970094 | None:intergenic | 60.0% | |
| ! | CAAGGGTGGGTTTGGTTGGC+AGG | - | chr3_1:9970134-9970153 | Msa0348090:intron | 60.0% |
| CTGTGGGGTCGGCAGCTGAT+TGG | - | chr3_1:9969527-9969546 | Msa0348090:intron | 65.0% | |
| TGGGGTCGGCAGCTGATTGG+TGG | - | chr3_1:9969530-9969549 | Msa0348090:intron | 65.0% | |
| GAGTGAGACGCCGAGGTGGC+TGG | + | chr3_1:9967700-9967719 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 9967600 | 9972036 | 9967600 | ID=Msa0348090;Name=Msa0348090 |
| chr3_1 | mRNA | 9967600 | 9972036 | 9967600 | ID=Msa0348090-mRNA-1;Parent=Msa0348090;Name=Msa0348090-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|1|0|1|1|1|2|0|659 |
| chr3_1 | exon | 9971529 | 9972036 | 9971529 | ID=Msa0348090-mRNA-1:exon:2819;Parent=Msa0348090-mRNA-1 |
| chr3_1 | exon | 9967600 | 9969071 | 9967600 | ID=Msa0348090-mRNA-1:exon:2818;Parent=Msa0348090-mRNA-1 |
| chr3_1 | CDS | 9971529 | 9972036 | 9971529 | ID=Msa0348090-mRNA-1:cds;Parent=Msa0348090-mRNA-1 |
| chr3_1 | CDS | 9967600 | 9969071 | 9967600 | ID=Msa0348090-mRNA-1:cds;Parent=Msa0348090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
