Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396150 | XP_003598518.1 | 98.104 | 422 | 8 | 0 | 1 | 422 | 1 | 422 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396150 | G7J0K8 | 98.104 | 422 | 8 | 0 | 1 | 422 | 1 | 422 | 0.0 | 861 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0396150 | Msa0661540 | 0.802839 | 4.636328e-49 | -8.615850e-47 |
| Msa0396150 | Msa0826940 | 0.813957 | 1.967554e-51 | -8.615850e-47 |
| Msa0290590 | Msa0396150 | 0.813794 | 2.136675e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396150 | MtrunA17_Chr3g0082521 | 98.104 | 422 | 8 | 0 | 1 | 422 | 1 | 422 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 96 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATGCTCTTGATGCTTC+TGG | 0.168943 | 3_2:-13981160 | Msa0396150:CDS |
| TACAGAGCTTGCAAGCTATT+TGG | 0.200944 | 3_2:+13975575 | None:intergenic |
| CATTAACAGGCATGTTGATT+TGG | 0.237546 | 3_2:-13980153 | Msa0396150:CDS |
| TTCTGAAAATGCTTCGTCTA+TGG | 0.264071 | 3_2:-13977871 | Msa0396150:CDS |
| TGGACACAGCATTAGACTTT+TGG | 0.265318 | 3_2:-13975620 | Msa0396150:three_prime_UTR |
| AAAATGAAGGAGGGCAAAAT+TGG | 0.266845 | 3_2:+13981260 | None:intergenic |
| AGGAGGGCAAAATTGGAATT+TGG | 0.288582 | 3_2:+13981267 | None:intergenic |
| AAACCAGCATTTGCATTAAC+AGG | 0.320884 | 3_2:-13980166 | Msa0396150:CDS |
| AACTTGCTGCCATGAACTAT+TGG | 0.326082 | 3_2:+13975656 | None:intergenic |
| GTTTAGTTATATATTTATAC+AGG | 0.341416 | 3_2:-13975451 | Msa0396150:three_prime_UTR |
| CTGTAATCTCTTAGCTCATT+TGG | 0.346789 | 3_2:+13976231 | None:intergenic |
| TTCAGCTTATGATAGCCTTT+AGG | 0.356772 | 3_2:+13977794 | None:intergenic |
| GACTCCATCCTTGCTCCAAC+TGG | 0.358917 | 3_2:+13975797 | None:intergenic |
| ATAATCTGAAGCATGCATTC+TGG | 0.376727 | 3_2:-13976668 | Msa0396150:CDS |
| TATAAATAAACAGTAATATC+AGG | 0.387303 | 3_2:+13975312 | None:intergenic |
| TATATAAGTGACAGCATTGC+AGG | 0.391828 | 3_2:+13977902 | None:intergenic |
| TGTAGAGAAGAAAGAGGTTG+TGG | 0.396330 | 3_2:+13981294 | None:intergenic |
| GATCATTTGTAACGAGGATA+AGG | 0.397028 | 3_2:+13976253 | None:intergenic |
| ATTAACAGGCATGTTGATTT+GGG | 0.398786 | 3_2:-13980152 | Msa0396150:CDS |
| AAGAACCAGTGCAAATCTAT+TGG | 0.400814 | 3_2:-13978071 | Msa0396150:CDS |
| TTTGTTCCTGGTACTTCGTC+AGG | 0.412483 | 3_2:+13976163 | None:intergenic |
| AAATGAAAGCCAATAGTTCA+TGG | 0.420734 | 3_2:-13975665 | Msa0396150:three_prime_UTR |
| TATGACATCAGGGAATCTAT+TGG | 0.425212 | 3_2:-13977744 | Msa0396150:CDS |
| ACTGTAAGAACACTGGTAAT+AGG | 0.431966 | 3_2:+13975409 | None:intergenic |
| TCTGAAAATGCTTCGTCTAT+GGG | 0.434996 | 3_2:-13977870 | Msa0396150:CDS |
| GACATGAGGCGTTCATTGTC+TGG | 0.437990 | 3_2:-13976392 | Msa0396150:intron |
| ATAGACTGGATCGAGGTGTT+TGG | 0.438089 | 3_2:-13976433 | Msa0396150:CDS |
| TTTGTATGATCATGATGAAA+AGG | 0.438635 | 3_2:+13976645 | None:intergenic |
| AAGATTAGATGATCTTTCAA+TGG | 0.440103 | 3_2:-13980045 | Msa0396150:CDS |
| CTAAACTCTGATTCTCCATC+TGG | 0.442938 | 3_2:-13981379 | Msa0396150:five_prime_UTR |
| TCCGTTGCTAGAAAGTTTCT+CGG | 0.450146 | 3_2:-13975769 | Msa0396150:CDS |
| CAAGCGCACATTATGACATC+AGG | 0.457639 | 3_2:-13977755 | Msa0396150:CDS |
| AGCTGCAGAAGATGATTCTC+TGG | 0.462249 | 3_2:-13980111 | Msa0396150:CDS |
| CGTATAATCCACAATGATAG+AGG | 0.464560 | 3_2:+13976202 | None:intergenic |
| GTTTGGACCACTGTGCGCTT+TGG | 0.474107 | 3_2:-13976416 | Msa0396150:CDS |
| GGAGAATGTAGAGAAGAAAG+AGG | 0.475780 | 3_2:+13981288 | None:intergenic |
| TGGCTCCAATAGATTTGCAC+TGG | 0.477372 | 3_2:+13978066 | None:intergenic |
| ACGAAAGCATCGACAGGAAG+TGG | 0.482460 | 3_2:+13980071 | None:intergenic |
| ATCAGGTAAAAGCGTAAAGC+TGG | 0.488418 | 3_2:+13975329 | None:intergenic |
| TTATGAATGAGCAGGAAGCC+AGG | 0.491755 | 3_2:-13980235 | Msa0396150:intron |
| AAAATATGTGATTAACAACT+TGG | 0.493497 | 3_2:-13975284 | Msa0396150:three_prime_UTR |
| TTTCAGCATCAAAATACAAA+AGG | 0.495452 | 3_2:+13977846 | None:intergenic |
| GTAGAGAAGAAAGAGGTTGT+GGG | 0.496524 | 3_2:+13981295 | None:intergenic |
| TTCTCTGGTATCACATTCAT+CGG | 0.498784 | 3_2:-13980096 | Msa0396150:CDS |
| GACGAAGTACCAGGAACAAA+AGG | 0.506839 | 3_2:-13976160 | Msa0396150:intron |
| CTGTGAACAGAATCCTTCCC+TGG | 0.507563 | 3_2:+13980217 | None:intergenic |
| TCCCCTCGTGTGATATGTCA+TGG | 0.514884 | 3_2:-13981229 | Msa0396150:CDS |
| TCATCCAGTTGGAGCAAGGA+TGG | 0.519551 | 3_2:-13975801 | Msa0396150:CDS |
| AGAATTTACATGAACATCAC+TGG | 0.524431 | 3_2:+13975355 | None:intergenic |
| TCGGGTGATGAATCATATGA+AGG | 0.525421 | 3_2:+13980002 | None:intergenic |
| CTCTGAAATTGCTTCAGCTA+AGG | 0.527602 | 3_2:-13976465 | Msa0396150:CDS |
| ATCAGGGAATCTATTGGTTG+AGG | 0.531383 | 3_2:-13977738 | Msa0396150:intron |
| CTGATGTCATAATGTGCGCT+TGG | 0.533154 | 3_2:+13977756 | None:intergenic |
| ACAATACCTGACGAAGTACC+AGG | 0.539219 | 3_2:-13976169 | Msa0396150:CDS |
| TAAGGCTGCTCAACATAGAC+TGG | 0.539706 | 3_2:-13976447 | Msa0396150:CDS |
| AGCATTCTCCTCTATCATTG+TGG | 0.542918 | 3_2:-13976210 | Msa0396150:CDS |
| GATGAAGAAGAAAATGAAGG+AGG | 0.556896 | 3_2:+13981250 | None:intergenic |
| CTTGAAACGAAAGCATCGAC+AGG | 0.565896 | 3_2:+13980065 | None:intergenic |
| ATGCCTGTTAATGCAAATGC+TGG | 0.568226 | 3_2:+13980163 | None:intergenic |
| CGGGTGATGAATCATATGAA+GGG | 0.569793 | 3_2:+13980003 | None:intergenic |
| GGGGATGAAGAAGAAAATGA+AGG | 0.569920 | 3_2:+13981247 | None:intergenic |
| AGAATCAGAGTTTAGTGATG+AGG | 0.570642 | 3_2:+13981387 | None:intergenic |
| GCGATTGAATCTCATCCAGT+TGG | 0.578998 | 3_2:-13975812 | Msa0396150:CDS |
| ACCGAGAAACTTTCTAGCAA+CGG | 0.581639 | 3_2:+13975768 | None:intergenic |
| CTGAAAATGCTTCGTCTATG+GGG | 0.584278 | 3_2:-13977869 | Msa0396150:CDS |
| CATTTGGATCATTTGTAACG+AGG | 0.590534 | 3_2:+13976247 | None:intergenic |
| ATGAAGAAGAAAATGAAGGA+GGG | 0.594463 | 3_2:+13981251 | None:intergenic |
| TCGGTAATAACTCTGATCCA+TGG | 0.595558 | 3_2:-13975750 | Msa0396150:CDS |
| TTTAGTTATATATTTATACA+GGG | 0.600217 | 3_2:-13975450 | Msa0396150:three_prime_UTR |
| AATCTCATCCAGTTGGAGCA+AGG | 0.604560 | 3_2:-13975805 | Msa0396150:CDS |
| TATGAATGAGCAGGAAGCCA+GGG | 0.605007 | 3_2:-13980234 | Msa0396150:intron |
| CTATCATAAGCTGAAAAGCA+AGG | 0.606589 | 3_2:-13977786 | Msa0396150:CDS |
| GAGTGAAGATAGAGTGCTTG+TGG | 0.606600 | 3_2:+13978046 | None:intergenic |
| AGTTGCCACGTGTTGAACGT+TGG | 0.610672 | 3_2:+13981201 | None:intergenic |
| TCGCGTTATTAGTTTATCGA+CGG | 0.614613 | 3_2:+13975831 | None:intergenic |
| TGTCGCGATTGAAACGAAAG+AGG | 0.617725 | 3_2:+13975722 | None:intergenic |
| ATCAGACTCTGAAAGTGACA+TGG | 0.630097 | 3_2:-13975866 | Msa0396150:CDS |
| TTATTATACTGTAAGAACAC+TGG | 0.638101 | 3_2:+13975402 | None:intergenic |
| AATGAGCAGGAAGCCAGGGA+AGG | 0.640830 | 3_2:-13980230 | Msa0396150:intron |
| CTGTGCGCTTTGGCGACATG+AGG | 0.642640 | 3_2:-13976406 | Msa0396150:CDS |
| AGGCTCCAACGTTCAACACG+TGG | 0.646427 | 3_2:-13981206 | Msa0396150:CDS |
| CATCATGCAAGAAGAACTTG+AGG | 0.646582 | 3_2:+13981176 | None:intergenic |
| TCATATGAAGGGGTGTAGTG+AGG | 0.651341 | 3_2:+13980014 | None:intergenic |
| GGGTGATGAATCATATGAAG+GGG | 0.657495 | 3_2:+13980004 | None:intergenic |
| AGAAACTTTCTAGCAACGGA+CGG | 0.659920 | 3_2:+13975772 | None:intergenic |
| CTATCATTGTGGATTATACG+AGG | 0.661047 | 3_2:-13976199 | Msa0396150:CDS |
| CCTCCATGACATATCACACG+AGG | 0.661063 | 3_2:+13981226 | None:intergenic |
| ACAAGCACTCTATCTTCACT+CGG | 0.662211 | 3_2:-13978044 | Msa0396150:intron |
| AAACGAAAGAGGAACTACCA+TGG | 0.668179 | 3_2:+13975733 | None:intergenic |
| AAGCGCACATTATGACATCA+GGG | 0.682740 | 3_2:-13977754 | Msa0396150:CDS |
| CTCCATGACATATCACACGA+GGG | 0.687060 | 3_2:+13981227 | None:intergenic |
| TCCATGACATATCACACGAG+GGG | 0.694967 | 3_2:+13981228 | None:intergenic |
| CATGTCGCCAAAGCGCACAG+TGG | 0.713769 | 3_2:+13976409 | None:intergenic |
| AAAGACAACAGATAGATACA+CGG | 0.722094 | 3_2:-13975490 | Msa0396150:three_prime_UTR |
| CCTCGTGTGATATGTCATGG+AGG | 0.732138 | 3_2:-13981226 | Msa0396150:CDS |
| GCTCAACATAGACTGGATCG+AGG | 0.749948 | 3_2:-13976440 | Msa0396150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAGAAATTAAATAT+GGG | + | chr3_2:13978631-13978650 | None:intergenic | 10.0% |
| !! | TTTCAAAAAGAAATTAAATA+TGG | + | chr3_2:13978632-13978651 | None:intergenic | 10.0% |
| !! | TTTGTTTAAAAAAATAGAAA+AGG | + | chr3_2:13979405-13979424 | None:intergenic | 10.0% |
| !! | AATTGTAACTATTATTAATT+AGG | - | chr3_2:13979748-13979767 | Msa0396150:intron | 10.0% |
| !! | CATTAAAATAAATAGAAAAT+AGG | + | chr3_2:13980106-13980125 | None:intergenic | 10.0% |
| !! | TTTAGTTATATATTTATACA+GGG | - | chr3_2:13981189-13981208 | Msa0396150:CDS | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr3_2:13975866-13975885 | None:intergenic | 15.0% |
| !! | TTACAATAAATGATCAAATT+TGG | - | chr3_2:13977084-13977103 | Msa0396150:intron | 15.0% |
| !! | TACAATAAATGATCAAATTT+GGG | - | chr3_2:13977085-13977104 | Msa0396150:intron | 15.0% |
| !! | GATACTGATAATAATTAAAA+TGG | - | chr3_2:13977244-13977263 | Msa0396150:intron | 15.0% |
| !!! | TCTTCTAATTAATAAAGTTT+TGG | - | chr3_2:13978281-13978300 | Msa0396150:intron | 15.0% |
| !! | ATTTATTTACAAATTACATG+TGG | + | chr3_2:13978511-13978530 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAATTAAATATG+GGG | + | chr3_2:13978630-13978649 | None:intergenic | 15.0% |
| !!! | AACATATAGTATTGAATATT+GGG | - | chr3_2:13979563-13979582 | Msa0396150:intron | 15.0% |
| !!! | ATACAAAAACCTTATTTTTA+AGG | - | chr3_2:13980010-13980029 | Msa0396150:CDS | 15.0% |
| !!! | TACAAAAACCTTATTTTTAA+GGG | - | chr3_2:13980011-13980030 | Msa0396150:CDS | 15.0% |
| !! | GTTTAGTTATATATTTATAC+AGG | - | chr3_2:13981188-13981207 | Msa0396150:CDS | 15.0% |
| !! | TATAAATAAACAGTAATATC+AGG | + | chr3_2:13981330-13981349 | None:intergenic | 15.0% |
| !! | TGGAATATATTGAAAAAAAA+TGG | - | chr3_2:13981375-13981394 | Msa0396150:five_prime_UTR | 15.0% |
| !! | TATGTTACATGTTTGAAAAA+TGG | - | chr3_2:13975983-13976002 | Msa0396150:intron | 20.0% |
| !!! | GAATTTTACAAGTTTTCATT+TGG | - | chr3_2:13976328-13976347 | Msa0396150:intron | 20.0% |
| !!! | AATAATCTTAATTTGTTGAG+TGG | - | chr3_2:13976376-13976395 | Msa0396150:intron | 20.0% |
| !! | TCTGATATCATCTTAAATTA+AGG | + | chr3_2:13976785-13976804 | None:intergenic | 20.0% |
| !!! | AAGATTATAGGTAGATATTT+TGG | - | chr3_2:13977420-13977439 | Msa0396150:intron | 20.0% |
| !! | ATTGACCTTGTTAAAATAAT+AGG | - | chr3_2:13977790-13977809 | Msa0396150:CDS | 20.0% |
| !! | TTGACCTTGTTAAAATAATA+GGG | - | chr3_2:13977791-13977810 | Msa0396150:CDS | 20.0% |
| !!! | AAAACCCTATTATTTTAACA+AGG | + | chr3_2:13977798-13977817 | None:intergenic | 20.0% |
| !! | AACTTGACATTAATAACATT+AGG | + | chr3_2:13977963-13977982 | None:intergenic | 20.0% |
| !! | GAACATTAAAAATATCATGA+GGG | + | chr3_2:13978826-13978845 | None:intergenic | 20.0% |
| !!! | GATATTTTTAATGTTCCTAA+AGG | - | chr3_2:13978830-13978849 | Msa0396150:intron | 20.0% |
| !!! | GAACATATAGTATTGAATAT+TGG | - | chr3_2:13979562-13979581 | Msa0396150:intron | 20.0% |
| !! | TTATCCTAATTAATAAACCA+AGG | + | chr3_2:13979730-13979749 | None:intergenic | 20.0% |
| !!! | TGATATATTTTTTCCAGATT+TGG | - | chr3_2:13980531-13980550 | Msa0396150:intron | 20.0% |
| !! | AAAATATGTGATTAACAACT+TGG | - | chr3_2:13981355-13981374 | Msa0396150:five_prime_UTR | 20.0% |
| ! | AATTCATGTTAAATGAAGCT+TGG | - | chr3_2:13975635-13975654 | Msa0396150:three_prime_UTR | 25.0% |
| ! | TGATTAGAGAATATAAACAG+GGG | + | chr3_2:13975684-13975703 | None:intergenic | 25.0% |
| ! | GTGATTAGAGAATATAAACA+GGG | + | chr3_2:13975685-13975704 | None:intergenic | 25.0% |
| ! | TGTTTATATTCTCTAATCAC+CGG | - | chr3_2:13975685-13975704 | Msa0396150:three_prime_UTR | 25.0% |
| !! | TGTTTGAAAAATGGACTTAA+TGG | - | chr3_2:13975992-13976011 | Msa0396150:intron | 25.0% |
| !! | AAACAAGTCTTTTCTCTATA+TGG | + | chr3_2:13976029-13976048 | None:intergenic | 25.0% |
| !!! | ATGGTTCTAAATTACAATTG+AGG | - | chr3_2:13976097-13976116 | Msa0396150:intron | 25.0% |
| ! | TTGATATTGAGGAAAAATGT+GGG | - | chr3_2:13976140-13976159 | Msa0396150:intron | 25.0% |
| ! | AAGATTAGATGATCTTTCAA+TGG | - | chr3_2:13976594-13976613 | Msa0396150:CDS | 25.0% |
| !! | AAGATTTTTGTATGTTCACA+AGG | - | chr3_2:13976681-13976700 | Msa0396150:intron | 25.0% |
| ! | TACCTATAATCTTATCAACT+TGG | + | chr3_2:13977413-13977432 | None:intergenic | 25.0% |
| ! | AGAATTGATATGATTTGAAG+AGG | + | chr3_2:13977575-13977594 | None:intergenic | 25.0% |
| ! | GCACAACACATTTAAATTTA+AGG | + | chr3_2:13977766-13977785 | None:intergenic | 25.0% |
| !!! | AAATAATAGGGTTTTAGATG+AGG | - | chr3_2:13977803-13977822 | Msa0396150:CDS | 25.0% |
| ! | TATGAGGTTTAACAATATTG+AGG | + | chr3_2:13977931-13977950 | None:intergenic | 25.0% |
| ! | GTTATTAATGTCAAGTTAGA+AGG | - | chr3_2:13977966-13977985 | Msa0396150:intron | 25.0% |
| !!! | AGTATAGTTTTGTGTGTTAT+AGG | + | chr3_2:13978048-13978067 | None:intergenic | 25.0% |
| !! | ACGTACCAAAATAAAGTTTT+GGG | + | chr3_2:13978156-13978175 | None:intergenic | 25.0% |
| !! | TACGTACCAAAATAAAGTTT+TGG | + | chr3_2:13978157-13978176 | None:intergenic | 25.0% |
| !!! | ATTTTGGTACGTAGTTAATT+AGG | - | chr3_2:13978164-13978183 | Msa0396150:intron | 25.0% |
| ! | AATTAACTATTTCAAACCTC+TGG | - | chr3_2:13978528-13978547 | Msa0396150:intron | 25.0% |
| ! | TTTACTTTAATGAATTGAGC+AGG | - | chr3_2:13978691-13978710 | Msa0396150:intron | 25.0% |
| ! | TTTCAGCATCAAAATACAAA+AGG | + | chr3_2:13978796-13978815 | None:intergenic | 25.0% |
| ! | GGAACATTAAAAATATCATG+AGG | + | chr3_2:13978827-13978846 | None:intergenic | 25.0% |
| !! | GTGTATATTTTTCCTAGTTT+TGG | - | chr3_2:13978994-13979013 | Msa0396150:intron | 25.0% |
| !! | TTTGGTGACTCTTAAAATTT+GGG | - | chr3_2:13979071-13979090 | Msa0396150:intron | 25.0% |
| ! | TCACATTTGCACATAAAATT+AGG | + | chr3_2:13979476-13979495 | None:intergenic | 25.0% |
| !! | TAATTTTATGTGCAAATGTG+AGG | - | chr3_2:13979475-13979494 | Msa0396150:intron | 25.0% |
| ! | AAATTATTGTGAGTTCTATG+TGG | + | chr3_2:13979665-13979684 | None:intergenic | 25.0% |
| ! | AGAACTCACAATAATTTACA+TGG | - | chr3_2:13979668-13979687 | Msa0396150:intron | 25.0% |
| ! | TCACAATAATTTACATGGTT+CGG | - | chr3_2:13979673-13979692 | Msa0396150:intron | 25.0% |
| ! | TTATATGAGAATATTCCAAG+AGG | - | chr3_2:13979843-13979862 | Msa0396150:intron | 25.0% |
| ! | GAATATATTATGAAACTAGG+AGG | + | chr3_2:13979886-13979905 | None:intergenic | 25.0% |
| ! | GCAGAATATATTATGAAACT+AGG | + | chr3_2:13979889-13979908 | None:intergenic | 25.0% |
| ! | TTTGTATGATCATGATGAAA+AGG | + | chr3_2:13979997-13980016 | None:intergenic | 25.0% |
| ! | AATATCAGAAAGTTTGACAT+TGG | + | chr3_2:13980320-13980339 | None:intergenic | 25.0% |
| ! | ATATCATTCATGCATTGTAT+AGG | + | chr3_2:13980517-13980536 | None:intergenic | 25.0% |
| ! | TTCAGTTTATTTGGAAAGAA+GGG | + | chr3_2:13980700-13980719 | None:intergenic | 25.0% |
| ! | ATTCAGTTTATTTGGAAAGA+AGG | + | chr3_2:13980701-13980720 | None:intergenic | 25.0% |
| !!! | GAACAAGATTTTTCAACAAA+TGG | - | chr3_2:13981126-13981145 | Msa0396150:intron | 25.0% |
| ! | TTATTATACTGTAAGAACAC+TGG | + | chr3_2:13981240-13981259 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTTATAGCCAGA+TGG | + | chr3_2:13975278-13975297 | None:intergenic | 30.0% |
| ATGAAGAAGAAAATGAAGGA+GGG | + | chr3_2:13975391-13975410 | None:intergenic | 30.0% | |
| ! | CAAGAGATGAATTTTTACTC+TGG | + | chr3_2:13975522-13975541 | None:intergenic | 30.0% |
| ATGTTAAATGAAGCTTGGAA+GGG | - | chr3_2:13975640-13975659 | Msa0396150:three_prime_UTR | 30.0% | |
| GGTGATTAGAGAATATAAAC+AGG | + | chr3_2:13975686-13975705 | None:intergenic | 30.0% | |
| TTCAAAATAGAAGTGAAGCT+TGG | - | chr3_2:13975756-13975775 | Msa0396150:CDS | 30.0% | |
| TAGAATTTGTCATCCTGTAA+TGG | - | chr3_2:13975786-13975805 | Msa0396150:CDS | 30.0% | |
| AAACAAAAAACCACCATTAC+AGG | + | chr3_2:13975802-13975821 | None:intergenic | 30.0% | |
| TTTAAGCTGAAACATAACAC+AGG | - | chr3_2:13975822-13975841 | Msa0396150:CDS | 30.0% | |
| TTAAGCTGAAACATAACACA+GGG | - | chr3_2:13975823-13975842 | Msa0396150:CDS | 30.0% | |
| TCGAAATGTTTGATTCATGA+AGG | - | chr3_2:13975938-13975957 | Msa0396150:intron | 30.0% | |
| GTCGTGTTAATTACAATCAA+TGG | - | chr3_2:13976078-13976097 | Msa0396150:intron | 30.0% | |
| CTAAATTACAATTGAGGTTG+AGG | - | chr3_2:13976103-13976122 | Msa0396150:intron | 30.0% | |
| TGTTGCAAATCTTGATATTG+AGG | - | chr3_2:13976129-13976148 | Msa0396150:intron | 30.0% | |
| CTTGATATTGAGGAAAAATG+TGG | - | chr3_2:13976139-13976158 | Msa0396150:intron | 30.0% | |
| !! | TGTGAATAGTTCTAAATTGC+GGG | + | chr3_2:13976262-13976281 | None:intergenic | 30.0% |
| !! | GTGTGAATAGTTCTAAATTG+CGG | + | chr3_2:13976263-13976282 | None:intergenic | 30.0% |
| !!! | TTCATTTGGTTTTGAACTTC+CGG | - | chr3_2:13976342-13976361 | Msa0396150:intron | 30.0% |
| ! | AGATTATTCAGTATCGAATC+CGG | + | chr3_2:13976364-13976383 | None:intergenic | 30.0% |
| !! | ATTAACAGGCATGTTGATTT+GGG | - | chr3_2:13976487-13976506 | Msa0396150:intron | 30.0% |
| ! | TATGCTCTCTAAAAACTTCT+CGG | + | chr3_2:13976659-13976678 | None:intergenic | 30.0% |
| ATGCGATAGAGTTTATAGAT+GGG | - | chr3_2:13976747-13976766 | Msa0396150:intron | 30.0% | |
| AGAATCTATCCAAGATGTAT+CGG | - | chr3_2:13976802-13976821 | Msa0396150:intron | 30.0% | |
| TAGCTATATCTCATTCAATG+CGG | + | chr3_2:13976905-13976924 | None:intergenic | 30.0% | |
| TATAGCTAACCCAAATTCTA+AGG | - | chr3_2:13976917-13976936 | Msa0396150:intron | 30.0% | |
| ACTCAAATGCCTTAGAATTT+GGG | + | chr3_2:13976929-13976948 | None:intergenic | 30.0% | |
| !!! | GAACTCTGAAGCATTATTTT+AGG | - | chr3_2:13976980-13976999 | Msa0396150:intron | 30.0% |
| GGTACATATGGATACTATAT+CGG | + | chr3_2:13977009-13977028 | None:intergenic | 30.0% | |
| ! | GAAACAATTAGAGGTACATA+TGG | + | chr3_2:13977021-13977040 | None:intergenic | 30.0% |
| !! | AGTAACAGTTAGGTCATTTT+AGG | - | chr3_2:13977054-13977073 | Msa0396150:intron | 30.0% |
| GCATTGAAGATCACAATATA+AGG | + | chr3_2:13977391-13977410 | None:intergenic | 30.0% | |
| !! | TGCCAAGTTGATAAGATTAT+AGG | - | chr3_2:13977408-13977427 | Msa0396150:intron | 30.0% |
| TATGAGAGTTCTGTAAATAG+AGG | + | chr3_2:13977472-13977491 | None:intergenic | 30.0% | |
| AACTCTCATAATGCCAAAAA+GGG | - | chr3_2:13977482-13977501 | Msa0396150:intron | 30.0% | |
| AATACCATTCTTATCACTTC+AGG | - | chr3_2:13977710-13977729 | Msa0396150:intron | 30.0% | |
| !! | AGAAAAAATGGATTGAGTTG+TGG | - | chr3_2:13977833-13977852 | Msa0396150:CDS | 30.0% |
| TAATGTATGTTGCATGTTCT+AGG | - | chr3_2:13978014-13978033 | Msa0396150:intron | 30.0% | |
| !!! | TTAATAAAGTTTTGGTGACG+TGG | - | chr3_2:13978289-13978308 | Msa0396150:intron | 30.0% |
| !! | ATAGGGAGCACTTATATTTA+CGG | + | chr3_2:13979039-13979058 | None:intergenic | 30.0% |
| ! | GTTTGGTGACTCTTAAAATT+TGG | - | chr3_2:13979070-13979089 | Msa0396150:intron | 30.0% |
| ATAACTCAATCCTACAAAAC+CGG | - | chr3_2:13979099-13979118 | Msa0396150:intron | 30.0% | |
| !! | ATCTTATAAACCGGTTTTGT+AGG | + | chr3_2:13979112-13979131 | None:intergenic | 30.0% |
| ! | AAAACCGGTTTATAAGATGA+CGG | - | chr3_2:13979114-13979133 | Msa0396150:intron | 30.0% |
| ATTGTATGAAATAGTGTCTG+AGG | + | chr3_2:13979310-13979329 | None:intergenic | 30.0% | |
| AGGCAAAGCTATGATAATTA+AGG | + | chr3_2:13979385-13979404 | None:intergenic | 30.0% | |
| ! | TTTTCCATACACACTTTAAG+AGG | + | chr3_2:13979439-13979458 | None:intergenic | 30.0% |
| TATATGTTCATACGTTGCTA+TGG | + | chr3_2:13979551-13979570 | None:intergenic | 30.0% | |
| ! | TTGTTTTCAACTAAGATCCT+AGG | + | chr3_2:13979639-13979658 | None:intergenic | 30.0% |
| TGATAACATTGTTATCCTCT+TGG | + | chr3_2:13979861-13979880 | None:intergenic | 30.0% | |
| GATACTAAAGCAGCTAAATA+TGG | + | chr3_2:13979911-13979930 | None:intergenic | 30.0% | |
| CTTGTCTTAAAGTTTGTCAA+CGG | - | chr3_2:13980145-13980164 | Msa0396150:CDS | 30.0% | |
| TAAACAATCTTGGTTGTTGA+TGG | + | chr3_2:13980594-13980613 | None:intergenic | 30.0% | |
| GAATTCGCATTAAACAATCT+TGG | + | chr3_2:13980604-13980623 | None:intergenic | 30.0% | |
| TCAGTTTATTTGGAAAGAAG+GGG | + | chr3_2:13980699-13980718 | None:intergenic | 30.0% | |
| CACATCACATTCAGTTTATT+TGG | + | chr3_2:13980709-13980728 | None:intergenic | 30.0% | |
| AAATGAAAGCCAATAGTTCA+TGG | - | chr3_2:13980974-13980993 | Msa0396150:intron | 30.0% | |
| CAATCTTACATGTAAAAACG+AGG | - | chr3_2:13981087-13981106 | Msa0396150:intron | 30.0% | |
| AAAGACAACAGATAGATACA+CGG | - | chr3_2:13981149-13981168 | Msa0396150:CDS | 30.0% | |
| AGAATTTACATGAACATCAC+TGG | + | chr3_2:13981287-13981306 | None:intergenic | 30.0% | |
| AAAAAAAATGGAACCGTGAA+AGG | - | chr3_2:13981387-13981406 | Msa0396150:five_prime_UTR | 30.0% | |
| AGAATCAGAGTTTAGTGATG+AGG | + | chr3_2:13975255-13975274 | None:intergenic | 35.0% | |
| AAAATGAAGGAGGGCAAAAT+TGG | + | chr3_2:13975382-13975401 | None:intergenic | 35.0% | |
| GATGAAGAAGAAAATGAAGG+AGG | + | chr3_2:13975392-13975411 | None:intergenic | 35.0% | |
| CATGTTAAATGAAGCTTGGA+AGG | - | chr3_2:13975639-13975658 | Msa0396150:three_prime_UTR | 35.0% | |
| AATTTGTCATCCTGTAATGG+TGG | - | chr3_2:13975789-13975808 | Msa0396150:CDS | 35.0% | |
| TTCTCTATATGGATCACTTG+AGG | + | chr3_2:13976018-13976037 | None:intergenic | 35.0% | |
| AGGAAAAATGTGGGCAATTA+TGG | - | chr3_2:13976149-13976168 | Msa0396150:intron | 35.0% | |
| !! | CCTCTAAAACTACTATATCG+CGG | - | chr3_2:13976218-13976237 | Msa0396150:CDS | 35.0% |
| ! | TGGTTGATTTATGAATGAGC+AGG | - | chr3_2:13976396-13976415 | Msa0396150:CDS | 35.0% |
| AAACCAGCATTTGCATTAAC+AGG | - | chr3_2:13976473-13976492 | Msa0396150:intron | 35.0% | |
| ! | CATTAACAGGCATGTTGATT+TGG | - | chr3_2:13976486-13976505 | Msa0396150:intron | 35.0% |
| TTCTCTGGTATCACATTCAT+CGG | - | chr3_2:13976543-13976562 | Msa0396150:intron | 35.0% | |
| ! | ATGCTCTCTAAAAACTTCTC+GGG | + | chr3_2:13976658-13976677 | None:intergenic | 35.0% |
| CATGCGATAGAGTTTATAGA+TGG | - | chr3_2:13976746-13976765 | Msa0396150:intron | 35.0% | |
| GAATCTATCCAAGATGTATC+GGG | - | chr3_2:13976803-13976822 | Msa0396150:intron | 35.0% | |
| AATCTATCCAAGATGTATCG+GGG | - | chr3_2:13976804-13976823 | Msa0396150:intron | 35.0% | |
| CACTCAAATGCCTTAGAATT+TGG | + | chr3_2:13976930-13976949 | None:intergenic | 35.0% | |
| !! | AATTCTAAGGCATTTGAGTG+TGG | - | chr3_2:13976930-13976949 | Msa0396150:intron | 35.0% |
| GTGTCTGTATTAACCACAAA+AGG | - | chr3_2:13976952-13976971 | Msa0396150:intron | 35.0% | |
| ! | CAGAGTTCAAAATCCTTTTG+TGG | + | chr3_2:13976968-13976987 | None:intergenic | 35.0% |
| ! | GTACCTCTAATTGTTTCTTG+AGG | - | chr3_2:13977024-13977043 | Msa0396150:intron | 35.0% |
| AGGCTCAAATAGTAACAGTT+AGG | - | chr3_2:13977044-13977063 | Msa0396150:intron | 35.0% | |
| ACAATATAAGGAGACTAGGA+TGG | + | chr3_2:13977379-13977398 | None:intergenic | 35.0% | |
| GATCACAATATAAGGAGACT+AGG | + | chr3_2:13977383-13977402 | None:intergenic | 35.0% | |
| GAACTCTCATAATGCCAAAA+AGG | - | chr3_2:13977481-13977500 | Msa0396150:intron | 35.0% | |
| TCATAATGCCAAAAAGGGAA+AGG | - | chr3_2:13977487-13977506 | Msa0396150:intron | 35.0% | |
| CATAATGCCAAAAAGGGAAA+GGG | - | chr3_2:13977488-13977507 | Msa0396150:intron | 35.0% | |
| ! | TCATTTTCCCTTTCCCTTTT+TGG | + | chr3_2:13977498-13977517 | None:intergenic | 35.0% |
| AAAAGGGAAAGGGAAAATGA+AGG | - | chr3_2:13977498-13977517 | Msa0396150:intron | 35.0% | |
| ACTCCTCCTAACATAAACTT+TGG | - | chr3_2:13977614-13977633 | Msa0396150:intron | 35.0% | |
| TTGCCAAAGTTTATGTTAGG+AGG | + | chr3_2:13977620-13977639 | None:intergenic | 35.0% | |
| TGCTTGCCAAAGTTTATGTT+AGG | + | chr3_2:13977623-13977642 | None:intergenic | 35.0% | |
| !!! | TAATAGGGTTTTAGATGAGG+AGG | - | chr3_2:13977806-13977825 | Msa0396150:CDS | 35.0% |
| !!! | AATAGGGTTTTAGATGAGGA+GGG | - | chr3_2:13977807-13977826 | Msa0396150:CDS | 35.0% |
| CTTTCTCAATCTTGAGGAAA+AGG | - | chr3_2:13977871-13977890 | Msa0396150:CDS | 35.0% | |
| ! | GAAAAGGTTCTTTTCGAAGA+TGG | - | chr3_2:13977887-13977906 | Msa0396150:CDS | 35.0% |
| CATTAGGTATAGACTCTATG+AGG | + | chr3_2:13977947-13977966 | None:intergenic | 35.0% | |
| TCTCCATTTCTCAAAAGAAG+CGG | + | chr3_2:13978082-13978101 | None:intergenic | 35.0% | |
| CAGTTAGAAGTAGCTCATAA+CGG | - | chr3_2:13978113-13978132 | Msa0396150:intron | 35.0% | |
| !! | GTTGGCCCAAAACTTTATTT+TGG | - | chr3_2:13978148-13978167 | Msa0396150:intron | 35.0% |
| ! | AAGTAATGCAGAGCAGATTT+TGG | - | chr3_2:13978201-13978220 | Msa0396150:intron | 35.0% |
| CAAAGCATAATCAATGCACT+GGG | + | chr3_2:13978247-13978266 | None:intergenic | 35.0% | |
| TCAAAGCATAATCAATGCAC+TGG | + | chr3_2:13978248-13978267 | None:intergenic | 35.0% | |
| AAGAACCAGTGCAAATCTAT+TGG | - | chr3_2:13978568-13978587 | Msa0396150:intron | 35.0% | |
| TATATAAGTGACAGCATTGC+AGG | + | chr3_2:13978740-13978759 | None:intergenic | 35.0% | |
| ! | TTCTGAAAATGCTTCGTCTA+TGG | - | chr3_2:13978768-13978787 | Msa0396150:intron | 35.0% |
| TCTGAAAATGCTTCGTCTAT+GGG | - | chr3_2:13978769-13978788 | Msa0396150:intron | 35.0% | |
| TTCAGCTTATGATAGCCTTT+AGG | + | chr3_2:13978848-13978867 | None:intergenic | 35.0% | |
| CTATCATAAGCTGAAAAGCA+AGG | - | chr3_2:13978853-13978872 | Msa0396150:intron | 35.0% | |
| TATGACATCAGGGAATCTAT+TGG | - | chr3_2:13978895-13978914 | Msa0396150:intron | 35.0% | |
| CCAAACAACAATGCTTGATA+GGG | + | chr3_2:13979056-13979075 | None:intergenic | 35.0% | |
| ACCAAACAACAATGCTTGAT+AGG | + | chr3_2:13979057-13979076 | None:intergenic | 35.0% | |
| GTCTCGCCATCTTAAAAATT+GGG | - | chr3_2:13979218-13979237 | Msa0396150:intron | 35.0% | |
| !! | GCTCAACCCAATTTTTAAGA+TGG | + | chr3_2:13979227-13979246 | None:intergenic | 35.0% |
| CTAACTCAATCCTACAAAAG+CGG | - | chr3_2:13979247-13979266 | Msa0396150:intron | 35.0% | |
| AAAAGCGGCTAGTAAGATAA+GGG | - | chr3_2:13979262-13979281 | Msa0396150:intron | 35.0% | |
| TCTTCCTCTTAAAGTGTGTA+TGG | - | chr3_2:13979432-13979451 | Msa0396150:intron | 35.0% | |
| !!! | TGAGGTTTTTTTCCATTGTC+TGG | - | chr3_2:13979493-13979512 | Msa0396150:intron | 35.0% |
| !!! | GAGGTTTTTTTCCATTGTCT+GGG | - | chr3_2:13979494-13979513 | Msa0396150:intron | 35.0% |
| TCTGCTTCTTCTGTTTGAAT+AGG | - | chr3_2:13979587-13979606 | Msa0396150:intron | 35.0% | |
| TGCGCCTTGGTTTATTAATT+AGG | - | chr3_2:13979723-13979742 | Msa0396150:intron | 35.0% | |
| GACTTAACATGAGTGCTAAA+GGG | + | chr3_2:13979933-13979952 | None:intergenic | 35.0% | |
| AGACTTAACATGAGTGCTAA+AGG | + | chr3_2:13979934-13979953 | None:intergenic | 35.0% | |
| ! | ATAATCTGAAGCATGCATTC+TGG | - | chr3_2:13979971-13979990 | Msa0396150:CDS | 35.0% |
| ATGTGCTGCCCTTAAAAATA+AGG | + | chr3_2:13980022-13980041 | None:intergenic | 35.0% | |
| ! | GTTGACAGATCTGATTTTGT+TGG | - | chr3_2:13980054-13980073 | Msa0396150:CDS | 35.0% |
| ! | GATCTGATTTTGTTGGAGAA+AGG | - | chr3_2:13980061-13980080 | Msa0396150:CDS | 35.0% |
| GATCATTTGTAACGAGGATA+AGG | + | chr3_2:13980389-13980408 | None:intergenic | 35.0% | |
| CATTTGGATCATTTGTAACG+AGG | + | chr3_2:13980395-13980414 | None:intergenic | 35.0% | |
| CTGTAATCTCTTAGCTCATT+TGG | + | chr3_2:13980411-13980430 | None:intergenic | 35.0% | |
| CGTATAATCCACAATGATAG+AGG | + | chr3_2:13980440-13980459 | None:intergenic | 35.0% | |
| ! | CTATCATTGTGGATTATACG+AGG | - | chr3_2:13980440-13980459 | Msa0396150:intron | 35.0% |
| ! | GTTATAGTACCTTTTGTTCC+TGG | + | chr3_2:13980491-13980510 | None:intergenic | 35.0% |
| ACGAGTTCTGCAAAAATGAA+CGG | + | chr3_2:13980734-13980753 | None:intergenic | 35.0% | |
| ! | TCGCGTTATTAGTTTATCGA+CGG | + | chr3_2:13980811-13980830 | None:intergenic | 35.0% |
| ACTGTAAGAACACTGGTAAT+AGG | + | chr3_2:13981233-13981252 | None:intergenic | 35.0% | |
| CTAAACTCTGATTCTCCATC+TGG | - | chr3_2:13975260-13975279 | Msa0396150:three_prime_UTR | 40.0% | |
| GTAGAGAAGAAAGAGGTTGT+GGG | + | chr3_2:13975347-13975366 | None:intergenic | 40.0% | |
| TGTAGAGAAGAAAGAGGTTG+TGG | + | chr3_2:13975348-13975367 | None:intergenic | 40.0% | |
| GGAGAATGTAGAGAAGAAAG+AGG | + | chr3_2:13975354-13975373 | None:intergenic | 40.0% | |
| AGGAGGGCAAAATTGGAATT+TGG | + | chr3_2:13975375-13975394 | None:intergenic | 40.0% | |
| GGGGATGAAGAAGAAAATGA+AGG | + | chr3_2:13975395-13975414 | None:intergenic | 40.0% | |
| CATCATGCAAGAAGAACTTG+AGG | + | chr3_2:13975466-13975485 | None:intergenic | 40.0% | |
| TATAAACAGGGGCCGTATAT+AGG | + | chr3_2:13975673-13975692 | None:intergenic | 40.0% | |
| !!! | CCGCGATATAGTAGTTTTAG+AGG | + | chr3_2:13976221-13976240 | None:intergenic | 40.0% |
| ATGCCTGTTAATGCAAATGC+TGG | + | chr3_2:13976479-13976498 | None:intergenic | 40.0% | |
| GGGTGATGAATCATATGAAG+GGG | + | chr3_2:13976638-13976657 | None:intergenic | 40.0% | |
| CGGGTGATGAATCATATGAA+GGG | + | chr3_2:13976639-13976658 | None:intergenic | 40.0% | |
| TCGGGTGATGAATCATATGA+AGG | + | chr3_2:13976640-13976659 | None:intergenic | 40.0% | |
| GAGCCTCAAGAAACAATTAG+AGG | + | chr3_2:13977030-13977049 | None:intergenic | 40.0% | |
| ACACCTTCAGTCAGAAGTTT+CGG | - | chr3_2:13977324-13977343 | Msa0396150:intron | 40.0% | |
| !! | TTCGGTGTTACATAGTTCCT+CGG | - | chr3_2:13977342-13977361 | Msa0396150:intron | 40.0% |
| TGCTCCTGAAGTGATAAGAA+TGG | + | chr3_2:13977717-13977736 | None:intergenic | 40.0% | |
| TGAGGAGGGAACAGAAAAAA+TGG | - | chr3_2:13977821-13977840 | Msa0396150:CDS | 40.0% | |
| CCTCAAGATTGAGAAAGTCT+GGG | + | chr3_2:13977868-13977887 | None:intergenic | 40.0% | |
| TCCTCAAGATTGAGAAAGTC+TGG | + | chr3_2:13977869-13977888 | None:intergenic | 40.0% | |
| GAGCTACTTCTAACTGAGTA+GGG | + | chr3_2:13978109-13978128 | None:intergenic | 40.0% | |
| TGAGCTACTTCTAACTGAGT+AGG | + | chr3_2:13978110-13978129 | None:intergenic | 40.0% | |
| ! | TACGAGTAGTAGCTTTTGCA+TGG | - | chr3_2:13978345-13978364 | Msa0396150:intron | 40.0% |
| ACAAGCACTCTATCTTCACT+CGG | - | chr3_2:13978595-13978614 | Msa0396150:intron | 40.0% | |
| CTGAAAATGCTTCGTCTATG+GGG | - | chr3_2:13978770-13978789 | Msa0396150:intron | 40.0% | |
| AAGCGCACATTATGACATCA+GGG | - | chr3_2:13978885-13978904 | Msa0396150:intron | 40.0% | |
| ! | ATCAGGGAATCTATTGGTTG+AGG | - | chr3_2:13978901-13978920 | Msa0396150:intron | 40.0% |
| GCACACTTTATGCCAAAACT+AGG | + | chr3_2:13979009-13979028 | None:intergenic | 40.0% | |
| ! | CCCTATCAAGCATTGTTGTT+TGG | - | chr3_2:13979053-13979072 | Msa0396150:intron | 40.0% |
| GGTGACTCTTAAAATTTGGG+TGG | - | chr3_2:13979074-13979093 | Msa0396150:intron | 40.0% | |
| GACTCCGTCATCTTATAAAC+CGG | + | chr3_2:13979121-13979140 | None:intergenic | 40.0% | |
| GGTCTCGCCATCTTAAAAAT+TGG | - | chr3_2:13979217-13979236 | Msa0396150:intron | 40.0% | |
| ! | CGCTTTTGTAGGATTGAGTT+AGG | + | chr3_2:13979249-13979268 | None:intergenic | 40.0% |
| !!! | ATCTTACTAGCCGCTTTTGT+AGG | + | chr3_2:13979260-13979279 | None:intergenic | 40.0% |
| CAAAAGCGGCTAGTAAGATA+AGG | - | chr3_2:13979261-13979280 | Msa0396150:intron | 40.0% | |
| AAATAGAACCCACGATCACT+AGG | + | chr3_2:13979352-13979371 | None:intergenic | 40.0% | |
| GTTACTGAAAACCCAGACAA+TGG | + | chr3_2:13979508-13979527 | None:intergenic | 40.0% | |
| CAGTTTACTTACAAGCTGTG+AGG | + | chr3_2:13979820-13979839 | None:intergenic | 40.0% | |
| TTAAAGTTTGTCAACGGCAG+TGG | - | chr3_2:13980151-13980170 | Msa0396150:CDS | 40.0% | |
| !! | CTCTGAAATTGCTTCAGCTA+AGG | - | chr3_2:13980174-13980193 | Msa0396150:CDS | 40.0% |
| CGTTCACATGCTGAAAGAAT+AGG | + | chr3_2:13980366-13980385 | None:intergenic | 40.0% | |
| AGCATTCTCCTCTATCATTG+TGG | - | chr3_2:13980429-13980448 | Msa0396150:intron | 40.0% | |
| TACTGCACATGATCCAAATC+TGG | + | chr3_2:13980547-13980566 | None:intergenic | 40.0% | |
| TTTCACGCAGTAAGTGATCT+CGG | + | chr3_2:13980644-13980663 | None:intergenic | 40.0% | |
| AATACTACTGCAGGAAATCC+TGG | - | chr3_2:13980673-13980692 | Msa0396150:intron | 40.0% | |
| ! | ATCAGACTCTGAAAGTGACA+TGG | - | chr3_2:13980773-13980792 | Msa0396150:intron | 40.0% |
| ! | AGAAACTTTCTAGCAACGGA+CGG | + | chr3_2:13980870-13980889 | None:intergenic | 40.0% |
| TCCGTTGCTAGAAAGTTTCT+CGG | - | chr3_2:13980870-13980889 | Msa0396150:intron | 40.0% | |
| ! | ACCGAGAAACTTTCTAGCAA+CGG | + | chr3_2:13980874-13980893 | None:intergenic | 40.0% |
| TCGGTAATAACTCTGATCCA+TGG | - | chr3_2:13980889-13980908 | Msa0396150:intron | 40.0% | |
| AAACGAAAGAGGAACTACCA+TGG | + | chr3_2:13980909-13980928 | None:intergenic | 40.0% | |
| !! | AACTTGCTGCCATGAACTAT+TGG | + | chr3_2:13980986-13981005 | None:intergenic | 40.0% |
| !! | GCAAGTTTTGCTGTGTTTTC+TGG | - | chr3_2:13980999-13981018 | Msa0396150:intron | 40.0% |
| ! | TGGACACAGCATTAGACTTT+TGG | - | chr3_2:13981019-13981038 | Msa0396150:intron | 40.0% |
| ! | GGACACAGCATTAGACTTTT+GGG | - | chr3_2:13981020-13981039 | Msa0396150:intron | 40.0% |
| TACAGAGCTTGCAAGCTATT+TGG | + | chr3_2:13981067-13981086 | None:intergenic | 40.0% | |
| ! | ATCAGGTAAAAGCGTAAAGC+TGG | + | chr3_2:13981313-13981332 | None:intergenic | 40.0% |
| TCCATGACATATCACACGAG+GGG | + | chr3_2:13975414-13975433 | None:intergenic | 45.0% | |
| CTCCATGACATATCACACGA+GGG | + | chr3_2:13975415-13975434 | None:intergenic | 45.0% | |
| CATGATGCTCTTGATGCTTC+TGG | - | chr3_2:13975479-13975498 | Msa0396150:three_prime_UTR | 45.0% | |
| !! | AAGGGTGTTCCGCCTATATA+CGG | - | chr3_2:13975658-13975677 | Msa0396150:three_prime_UTR | 45.0% |
| GTTCGTCTTGAGCAGGAATA+TGG | - | chr3_2:13975713-13975732 | Msa0396150:three_prime_UTR | 45.0% | |
| ATGTGGGCAATTATGGCCAA+TGG | - | chr3_2:13976156-13976175 | Msa0396150:intron | 45.0% | |
| CAATTATGGCTCCACTCCAT+TGG | + | chr3_2:13976175-13976194 | None:intergenic | 45.0% | |
| ATGGAGTGGAGCCATAATTG+CGG | - | chr3_2:13976175-13976194 | Msa0396150:CDS | 45.0% | |
| TGACATCGCAACCGCAATTA+TGG | + | chr3_2:13976189-13976208 | None:intergenic | 45.0% | |
| !! | ACACTTGCAGCTTGTTGTGA+TGG | - | chr3_2:13976281-13976300 | Msa0396150:intron | 45.0% |
| !! | CAGCTTGTTGTGATGGAAGA+TGG | - | chr3_2:13976288-13976307 | Msa0396150:intron | 45.0% |
| TTATGAATGAGCAGGAAGCC+AGG | - | chr3_2:13976404-13976423 | Msa0396150:CDS | 45.0% | |
| TATGAATGAGCAGGAAGCCA+GGG | - | chr3_2:13976405-13976424 | Msa0396150:CDS | 45.0% | |
| AGCTGCAGAAGATGATTCTC+TGG | - | chr3_2:13976528-13976547 | Msa0396150:intron | 45.0% | |
| !! | CTTGAAACGAAAGCATCGAC+AGG | + | chr3_2:13976577-13976596 | None:intergenic | 45.0% |
| ! | TCATATGAAGGGGTGTAGTG+AGG | + | chr3_2:13976628-13976647 | None:intergenic | 45.0% |
| ! | TTCTGACTGAAGGTGTGTCT+GGG | + | chr3_2:13977320-13977339 | None:intergenic | 45.0% |
| ACACCGAAACTTCTGACTGA+AGG | + | chr3_2:13977330-13977349 | None:intergenic | 45.0% | |
| ! | TGAAGAGGTATGAGACCAAG+CGG | + | chr3_2:13977560-13977579 | None:intergenic | 45.0% |
| AGGAGGAGTGAGTGAGAAAT+AGG | + | chr3_2:13977603-13977622 | None:intergenic | 45.0% | |
| CCCAGACTTTCTCAATCTTG+AGG | - | chr3_2:13977865-13977884 | Msa0396150:CDS | 45.0% | |
| !! | TCGCCGCTTCTTTTGAGAAA+TGG | - | chr3_2:13978076-13978095 | Msa0396150:CDS | 45.0% |
| ACACCAGTTTCCAGTTTCCA+CGG | + | chr3_2:13978384-13978403 | None:intergenic | 45.0% | |
| CACATATGTAATGTGCCAGC+TGG | - | chr3_2:13978413-13978432 | Msa0396150:intron | 45.0% | |
| !! | GTTCTTCTGAAACCCTGTTG+CGG | + | chr3_2:13978554-13978573 | None:intergenic | 45.0% |
| TGGCTCCAATAGATTTGCAC+TGG | + | chr3_2:13978576-13978595 | None:intergenic | 45.0% | |
| ! | GAGTGAAGATAGAGTGCTTG+TGG | + | chr3_2:13978596-13978615 | None:intergenic | 45.0% |
| !!! | GCAGGTTTTGACTCATCGTT+CGG | - | chr3_2:13978709-13978728 | Msa0396150:intron | 45.0% |
| !!! | CAGGTTTTGACTCATCGTTC+GGG | - | chr3_2:13978710-13978729 | Msa0396150:intron | 45.0% |
| CTGATGTCATAATGTGCGCT+TGG | + | chr3_2:13978886-13978905 | None:intergenic | 45.0% | |
| CAAGCGCACATTATGACATC+AGG | - | chr3_2:13978884-13978903 | Msa0396150:intron | 45.0% | |
| ! | AGTTTGACTCGATGACCCAA+CGG | - | chr3_2:13979195-13979214 | Msa0396150:intron | 45.0% |
| GTGAAAATCCACACACACCT+AGG | - | chr3_2:13979619-13979638 | Msa0396150:intron | 45.0% | |
| ACTAAGATCCTAGGTGTGTG+TGG | + | chr3_2:13979630-13979649 | None:intergenic | 45.0% | |
| TAAGGCTGCTCAACATAGAC+TGG | - | chr3_2:13980192-13980211 | Msa0396150:CDS | 45.0% | |
| ! | ATAGACTGGATCGAGGTGTT+TGG | - | chr3_2:13980206-13980225 | Msa0396150:CDS | 45.0% |
| ! | ACAATACCTGACGAAGTACC+AGG | - | chr3_2:13980470-13980489 | Msa0396150:intron | 45.0% |
| TTTGTTCCTGGTACTTCGTC+AGG | + | chr3_2:13980479-13980498 | None:intergenic | 45.0% | |
| ! | GACGAAGTACCAGGAACAAA+AGG | - | chr3_2:13980479-13980498 | Msa0396150:intron | 45.0% |
| TTATTTGGAAAGAAGGGGCC+AGG | + | chr3_2:13980694-13980713 | None:intergenic | 45.0% | |
| GCGATTGAATCTCATCCAGT+TGG | - | chr3_2:13980827-13980846 | Msa0396150:intron | 45.0% | |
| AATCTCATCCAGTTGGAGCA+AGG | - | chr3_2:13980834-13980853 | Msa0396150:intron | 45.0% | |
| TGTCGCGATTGAAACGAAAG+AGG | + | chr3_2:13980920-13980939 | None:intergenic | 45.0% | |
| TCCCCTCGTGTGATATGTCA+TGG | - | chr3_2:13975410-13975429 | Msa0396150:three_prime_UTR | 50.0% | |
| CCTCCATGACATATCACACG+AGG | + | chr3_2:13975416-13975435 | None:intergenic | 50.0% | |
| CCTCGTGTGATATGTCATGG+AGG | - | chr3_2:13975413-13975432 | Msa0396150:three_prime_UTR | 50.0% | |
| AGTTGCCACGTGTTGAACGT+TGG | + | chr3_2:13975441-13975460 | None:intergenic | 50.0% | |
| AAACAGGGGCCGTATATAGG+CGG | + | chr3_2:13975670-13975689 | None:intergenic | 50.0% | |
| TGCTCAAGACGAACAGAGAC+CGG | + | chr3_2:13975707-13975726 | None:intergenic | 50.0% | |
| GGCAATTATGGCCAATGGAG+TGG | - | chr3_2:13976161-13976180 | Msa0396150:CDS | 50.0% | |
| ! | GCGGGTTGCAGCATAAATTG+TGG | + | chr3_2:13976244-13976263 | None:intergenic | 50.0% |
| CTGTGAACAGAATCCTTCCC+TGG | + | chr3_2:13976425-13976444 | None:intergenic | 50.0% | |
| !! | ACGAAAGCATCGACAGGAAG+TGG | + | chr3_2:13976571-13976590 | None:intergenic | 50.0% |
| AGAGGAAGCCTGATAACAGG+TGG | + | chr3_2:13976830-13976849 | None:intergenic | 50.0% | |
| GCTAGAGGAAGCCTGATAAC+AGG | + | chr3_2:13976833-13976852 | None:intergenic | 50.0% | |
| ! | GACATCTAGAGTGTGGCTAG+AGG | + | chr3_2:13976848-13976867 | None:intergenic | 50.0% |
| CACACATCAACGTCTGACAG+TGG | + | chr3_2:13977291-13977310 | None:intergenic | 50.0% | |
| ! | TCTGACTGAAGGTGTGTCTG+GGG | + | chr3_2:13977319-13977338 | None:intergenic | 50.0% |
| ! | CTTCTGACTGAAGGTGTGTC+TGG | + | chr3_2:13977321-13977340 | None:intergenic | 50.0% |
| ! | AAGAGGTATGAGACCAAGCG+GGG | + | chr3_2:13977558-13977577 | None:intergenic | 50.0% |
| ! | GAAGAGGTATGAGACCAAGC+GGG | + | chr3_2:13977559-13977578 | None:intergenic | 50.0% |
| CTCATAACGGCAGCCAACTA+GGG | - | chr3_2:13978126-13978145 | Msa0396150:intron | 50.0% | |
| !!! | AGTTTTGGGCCAACCCTAGT+TGG | + | chr3_2:13978142-13978161 | None:intergenic | 50.0% |
| ATGGATGTGAGTTGTCACCG+TGG | - | chr3_2:13978364-13978383 | Msa0396150:intron | 50.0% | |
| TGAGTTGTCACCGTGGAAAC+TGG | - | chr3_2:13978371-13978390 | Msa0396150:intron | 50.0% | |
| TCACCGTGGAAACTGGAAAC+TGG | - | chr3_2:13978378-13978397 | Msa0396150:intron | 50.0% | |
| ! | ATCTAGTTTCTGCAGCCAGC+TGG | + | chr3_2:13978431-13978450 | None:intergenic | 50.0% |
| ! | GTTTGACTCGATGACCCAAC+GGG | - | chr3_2:13979196-13979215 | Msa0396150:intron | 50.0% |
| TTAAGATGGCGAGACCCGTT+GGG | + | chr3_2:13979213-13979232 | None:intergenic | 50.0% | |
| ! | TTTAAGATGGCGAGACCCGT+TGG | + | chr3_2:13979214-13979233 | None:intergenic | 50.0% |
| TAGCAGTGACCTAGTGATCG+TGG | - | chr3_2:13979340-13979359 | Msa0396150:intron | 50.0% | |
| AGCAGTGACCTAGTGATCGT+GGG | - | chr3_2:13979341-13979360 | Msa0396150:intron | 50.0% | |
| GCTCAACATAGACTGGATCG+AGG | - | chr3_2:13980199-13980218 | Msa0396150:CDS | 50.0% | |
| ACTTACTGCGTGAAACGTCG+TGG | - | chr3_2:13980649-13980668 | Msa0396150:intron | 50.0% | |
| CGTCGTGGAAATACTACTGC+AGG | - | chr3_2:13980664-13980683 | Msa0396150:intron | 50.0% | |
| TCATCCAGTTGGAGCAAGGA+TGG | - | chr3_2:13980838-13980857 | Msa0396150:intron | 50.0% | |
| AGGCTCCAACGTTCAACACG+TGG | - | chr3_2:13975433-13975452 | Msa0396150:three_prime_UTR | 55.0% | |
| GGTCTCTGTTCGTCTTGAGC+AGG | - | chr3_2:13975706-13975725 | Msa0396150:three_prime_UTR | 55.0% | |
| AATGAGCAGGAAGCCAGGGA+AGG | - | chr3_2:13976409-13976428 | Msa0396150:CDS | 55.0% | |
| TATCGGGGCCACCTGTTATC+AGG | - | chr3_2:13976819-13976838 | Msa0396150:intron | 55.0% | |
| ! | GGGACTGGACATCTAGAGTG+TGG | + | chr3_2:13976855-13976874 | None:intergenic | 55.0% |
| GGATGGTGCAAACATTGCCG+AGG | + | chr3_2:13977362-13977381 | None:intergenic | 55.0% | |
| AGAGACATCTCATCCCCGCT+TGG | - | chr3_2:13977542-13977561 | Msa0396150:intron | 55.0% | |
| GCTCATAACGGCAGCCAACT+AGG | - | chr3_2:13978125-13978144 | Msa0396150:intron | 55.0% | |
| TAACGGCAGCCAACTAGGGT+TGG | - | chr3_2:13978130-13978149 | Msa0396150:intron | 55.0% | |
| TTCAAACCTCTGGCCGCAAC+AGG | - | chr3_2:13978538-13978557 | Msa0396150:intron | 55.0% | |
| TCAAACCTCTGGCCGCAACA+GGG | - | chr3_2:13978539-13978558 | Msa0396150:intron | 55.0% | |
| TAAGCACACCCTTCACGCTC+AGG | - | chr3_2:13979159-13979178 | Msa0396150:intron | 55.0% | |
| TGTCCAGTCCTGAGCGTGAA+GGG | + | chr3_2:13979170-13979189 | None:intergenic | 55.0% | |
| ATGTCCAGTCCTGAGCGTGA+AGG | + | chr3_2:13979171-13979190 | None:intergenic | 55.0% | |
| GTTTGGACCACTGTGCGCTT+TGG | - | chr3_2:13980223-13980242 | Msa0396150:CDS | 55.0% | |
| GACTCCATCCTTGCTCCAAC+TGG | + | chr3_2:13980845-13980864 | None:intergenic | 55.0% | |
| CAGGTGGCCCCGATACATCT+TGG | + | chr3_2:13976814-13976833 | None:intergenic | 60.0% | |
| AGATGTCCAGTCCCGCGTGA+AGG | - | chr3_2:13976861-13976880 | Msa0396150:intron | 60.0% | |
| GATGTCCAGTCCCGCGTGAA+GGG | - | chr3_2:13976862-13976881 | Msa0396150:intron | 60.0% | |
| ATGTCCAGTCCCGCGTGAAG+GGG | - | chr3_2:13976863-13976882 | Msa0396150:intron | 60.0% | |
| AACACACCCACCCCTTCACG+CGG | + | chr3_2:13976876-13976895 | None:intergenic | 60.0% | |
| TGAAACCCTGTTGCGGCCAG+AGG | + | chr3_2:13978547-13978566 | None:intergenic | 60.0% | |
| ACACCCTTCACGCTCAGGAC+TGG | - | chr3_2:13979164-13979183 | Msa0396150:intron | 60.0% | |
| CACCTCTTGCCTTCGTCCAC+AGG | - | chr3_2:13979696-13979715 | Msa0396150:intron | 60.0% | |
| CTCCTGTGGACGAAGGCAAG+AGG | + | chr3_2:13979701-13979720 | None:intergenic | 60.0% | |
| AACCAAGGCGCATGCTCCTG+TGG | + | chr3_2:13979715-13979734 | None:intergenic | 60.0% | |
| ACACACCCACCCCTTCACGC+GGG | + | chr3_2:13976875-13976894 | None:intergenic | 65.0% | |
| GCGCATGCTCCTGTGGACGA+AGG | + | chr3_2:13979708-13979727 | None:intergenic | 65.0% | |
| ! | GTCCACAGGAGCATGCGCCT+TGG | - | chr3_2:13979710-13979729 | Msa0396150:intron | 65.0% |
| TCCAGTCCCGCGTGAAGGGG+TGG | - | chr3_2:13976866-13976885 | Msa0396150:intron | 70.0% | |
| CCAGTCCCGCGTGAAGGGGT+GGG | - | chr3_2:13976867-13976886 | Msa0396150:intron | 70.0% | |
| CCCACCCCTTCACGCGGGAC+TGG | + | chr3_2:13976870-13976889 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 13975251 | 13981410 | 13975251 | ID=Msa0396150;Name=Msa0396150 |
| chr3_2 | mRNA | 13975251 | 13981410 | 13975251 | ID=Msa0396150-mRNA-1;Parent=Msa0396150;Name=Msa0396150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|1|1|1|1|1|8|496|422 |
| chr3_2 | exon | 13975251 | 13975914 | 13975251 | ID=Msa0396150-mRNA-1:exon:3215;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13976161 | 13976285 | 13976161 | ID=Msa0396150-mRNA-1:exon:3214;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13976393 | 13976490 | 13976393 | ID=Msa0396150-mRNA-1:exon:3213;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13976579 | 13976697 | 13976579 | ID=Msa0396150-mRNA-1:exon:3212;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13977739 | 13977948 | 13977739 | ID=Msa0396150-mRNA-1:exon:3211;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13978045 | 13978101 | 13978045 | ID=Msa0396150-mRNA-1:exon:3210;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13979959 | 13980243 | 13979959 | ID=Msa0396150-mRNA-1:exon:3209;Parent=Msa0396150-mRNA-1 |
| chr3_2 | exon | 13981138 | 13981410 | 13981138 | ID=Msa0396150-mRNA-1:exon:3208;Parent=Msa0396150-mRNA-1 |
| chr3_2 | five_prime_UTR | 13981345 | 13981410 | 13981345 | ID=Msa0396150-mRNA-1:five_prime_utr;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13981138 | 13981344 | 13981138 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13979959 | 13980243 | 13979959 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13978045 | 13978101 | 13978045 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13977739 | 13977948 | 13977739 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13976579 | 13976697 | 13976579 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13976393 | 13976490 | 13976393 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13976161 | 13976285 | 13976161 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | CDS | 13975747 | 13975914 | 13975747 | ID=Msa0396150-mRNA-1:cds;Parent=Msa0396150-mRNA-1 |
| chr3_2 | three_prime_UTR | 13975251 | 13975746 | 13975251 | ID=Msa0396150-mRNA-1:three_prime_utr;Parent=Msa0396150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
