AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826940 MtrunA17_Chr3g0082521 95.561 428 13 1 1 428 1 422 0.0 843
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 106 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAAAATGCTTCGTTTA+TGG 0.124552 5_3:+67856851 Msa0826940:CDS
CATGATGCTCTTGATGCTTC+TGG 0.168943 5_3:+67853138 Msa0826940:CDS
TACAGAGCTTGCAAGCTATT+TGG 0.200944 5_3:-67858835 None:intergenic
ACAACATCAACGAAGAATTT+TGG 0.218573 5_3:+67858708 Msa0826940:three_prime_UTR
CATTAACAGGCATGTTGATT+TGG 0.237546 5_3:+67854494 Msa0826940:CDS
TGGACACAGCATTAGACTTT+TGG 0.265318 5_3:+67858790 Msa0826940:three_prime_UTR
AAAATGAAGGAGGGCAAAAT+TGG 0.270665 5_3:-67853038 None:intergenic
TCTGTTGTCTTTCCATTTGT+TGG 0.275836 5_3:-67858909 None:intergenic
TCTGAAAATGCTTCGTTTAT+GGG 0.277428 5_3:+67856852 Msa0826940:CDS
AGGAGGGCAAAATTGGAATT+TGG 0.288582 5_3:-67853031 None:intergenic
TTCAAACCTCTGGCCGCAAC+AGG 0.311866 5_3:+67856639 Msa0826940:CDS
AAACCAGCATTTGCATTAAC+AGG 0.320884 5_3:+67854481 Msa0826940:CDS
TCCGTTGCTAGAAAGTTTCT+TGG 0.324598 5_3:+67858641 Msa0826940:CDS
CTAAACTCTGATTCTCTATC+TGG 0.334187 5_3:+67852919 Msa0826940:five_prime_UTR
ATTTAGTTATATATTTATAC+AGG 0.341416 5_3:+67858957 Msa0826940:three_prime_UTR
CTGTAATCTCTTAGCTCATT+TGG 0.346789 5_3:-67858176 None:intergenic
TTCAGCTTATGATAGCCTTT+AGG 0.356772 5_3:-67856928 None:intergenic
TATAAATAAACTGTAATATC+AGG 0.357191 5_3:-67859096 None:intergenic
GACTCCATCCTTGCTCCAAC+TGG 0.358917 5_3:-67858613 None:intergenic
ATAATCTGAAGCATGCATTC+TGG 0.376727 5_3:+67857732 Msa0826940:CDS
TATATAAGTGACAGCATTGC+AGG 0.391828 5_3:-67856820 None:intergenic
TGTAGAGAAGAAAGAGGTTG+TGG 0.396330 5_3:-67853004 None:intergenic
GATCATTTGTAACGAGGATA+AGG 0.397028 5_3:-67858154 None:intergenic
ATTAACAGGCATGTTGATTT+GGG 0.398786 5_3:+67854495 Msa0826940:CDS
AAGAACCAGTGCAAATCTAT+TGG 0.400814 5_3:+67856669 Msa0826940:CDS
TTTGTTCCTGGTACTTCGTC+AGG 0.412483 5_3:-67858244 None:intergenic
ACTGTAAGAACACTGGTAAT+AGG 0.431966 5_3:-67858999 None:intergenic
AAATGAAAGCTAATAGTTCA+TGG 0.433105 5_3:+67858745 Msa0826940:three_prime_UTR
GATTAACTATTTCAAACCTC+TGG 0.434289 5_3:+67856629 Msa0826940:intron
GACATGAGGCGTTCATTGTC+TGG 0.437990 5_3:+67858013 Msa0826940:CDS
ATAGACTGGATCGAGGTGTT+TGG 0.438089 5_3:+67857972 Msa0826940:CDS
TTTGTATGATCATGATGAAA+AGG 0.438635 5_3:-67857755 None:intergenic
AAGATTAGATGATCTTTCAA+TGG 0.440103 5_3:+67854602 Msa0826940:CDS
CTGATGTCATTATGTGTGCT+TGG 0.441375 5_3:-67856966 None:intergenic
ATCCTTGCTCCAACTGGATG+AGG 0.450312 5_3:-67858607 None:intergenic
CTTGAAACGAAGGCATCAAC+AGG 0.453702 5_3:-67854582 None:intergenic
AGCTGCAGAAGATGATTCTC+TGG 0.462249 5_3:+67854536 Msa0826940:CDS
CGTATAATCCACAATGATAG+AGG 0.464560 5_3:-67858205 None:intergenic
GTTTGGACCACTGTGCGCTT+TGG 0.474107 5_3:+67857989 Msa0826940:CDS
AATGACATCAGGGAATCTAT+TGG 0.474691 5_3:+67856978 Msa0826940:CDS
GGAGAATGTAGAGAAGAAAG+AGG 0.475780 5_3:-67853010 None:intergenic
TGGCTCCAATAGATTTGCAC+TGG 0.477372 5_3:-67856674 None:intergenic
CAAGCACACATAATGACATC+AGG 0.478012 5_3:+67856967 Msa0826940:CDS
TTATGAATGAGCAGGAAGCC+AGG 0.491755 5_3:+67854412 Msa0826940:intron
AAAATATGTGATTAACAACT+TGG 0.493497 5_3:+67859124 Msa0826940:three_prime_UTR
GTAGAGAAGAAAGAGGTTGT+GGG 0.496524 5_3:-67853003 None:intergenic
CTGAAAATGCTTCGTTTATG+GGG 0.500173 5_3:+67856853 Msa0826940:CDS
ATCAGGTAAAGGCGTAAAGC+TGG 0.500633 5_3:-67859079 None:intergenic
TTTCTGCATCAAAATACAAA+AGG 0.506806 5_3:-67856876 None:intergenic
GACGAAGTACCAGGAACAAA+AGG 0.506839 5_3:+67858247 Msa0826940:CDS
CTGTGAACAGAATCCTTCCC+TGG 0.507563 5_3:-67854430 None:intergenic
TCCCCTCGTGTGATATGTCA+TGG 0.514884 5_3:+67853069 Msa0826940:CDS
CTCTCAAATTGCTTCAGCTA+AGG 0.519443 5_3:+67857940 Msa0826940:CDS
TCATCCAGTTGGAGCAAGGA+TGG 0.519551 5_3:+67858609 Msa0826940:CDS
TGAAACCCTGTTGCGGCCAG+AGG 0.520340 5_3:-67856645 None:intergenic
ATCAGGGAATCTATTGGTTG+AGG 0.531383 5_3:+67856984 Msa0826940:CDS
TAAACTGTAATATCAGGTAA+AGG 0.534543 5_3:-67859090 None:intergenic
TTCTCTGGTATCACATTCAT+CGG 0.538397 5_3:+67854551 Msa0826940:CDS
ACAATACCTGACGAAGTACC+AGG 0.539219 5_3:+67858238 Msa0826940:CDS
TAAGGCTGCTCAACATAGAC+TGG 0.539706 5_3:+67857958 Msa0826940:CDS
AGCATTCTCCTCTATCATTG+TGG 0.542918 5_3:+67858197 Msa0826940:CDS
ACCAAGAAACTTTCTAGCAA+CGG 0.543432 5_3:-67858642 None:intergenic
TCGGGCGATGAATCATATGA+AGG 0.547656 5_3:-67854645 None:intergenic
TATATTTATACAGGGAGCAA+AGG 0.552828 5_3:+67858966 Msa0826940:three_prime_UTR
GGGGATGAATAAGAAAATGA+AGG 0.553136 5_3:-67853051 None:intergenic
ATCATCTAATCTTGAAACGA+AGG 0.557034 5_3:-67854592 None:intergenic
AGAATCAGAGTTTAGTGATG+AGG 0.557069 5_3:-67852911 None:intergenic
ACGAAGGCATCAACAGGAAG+TGG 0.560991 5_3:-67854576 None:intergenic
TTGGTAATAACTCTGATCCA+TGG 0.562557 5_3:+67858660 Msa0826940:CDS
CGGGCGATGAATCATATGAA+GGG 0.568024 5_3:-67854644 None:intergenic
ATGCCTGTTAATGCAAATGC+TGG 0.568226 5_3:-67854484 None:intergenic
AGTTGCCGCGTGTTGAACGT+TGG 0.568265 5_3:-67853097 None:intergenic
AGAATTTACATGAACATCAC+AGG 0.581748 5_3:-67859053 None:intergenic
AACCTCATCCAGTTGGAGCA+AGG 0.588007 5_3:+67858605 Msa0826940:CDS
CATTTGGATCATTTGTAACG+AGG 0.590534 5_3:-67858160 None:intergenic
ATGAATAAGAAAATGAAGGA+GGG 0.597273 5_3:-67853047 None:intergenic
GCGATTGAACCTCATCCAGT+TGG 0.599688 5_3:+67858598 Msa0826940:CDS
TTTAGTTATATATTTATACA+GGG 0.600217 5_3:+67858958 Msa0826940:three_prime_UTR
TCAAACCTCTGGCCGCAACA+GGG 0.600873 5_3:+67856640 Msa0826940:CDS
GATGAATAAGAAAATGAAGG+AGG 0.601768 5_3:-67853048 None:intergenic
TATGAATGAGCAGGAAGCCA+GGG 0.605007 5_3:+67854413 Msa0826940:intron
CTATCATAAGCTGAAAAGCA+AGG 0.606589 5_3:+67856936 Msa0826940:CDS
GAGTGAAGATAGAGTGCTTG+TGG 0.606600 5_3:-67856694 None:intergenic
TCGCGTTATTAGTTTATCGA+CGG 0.614613 5_3:-67858579 None:intergenic
TGTCGCGATTGAAACGAAAG+AGG 0.617725 5_3:-67858688 None:intergenic
GGGCGATGAATCATATGAAG+GGG 0.623869 5_3:-67854643 None:intergenic
ATCAGACTCTGAAAGTGACA+TGG 0.630097 5_3:+67858544 Msa0826940:CDS
TTATTATACTGTAAGAACAC+TGG 0.638101 5_3:-67859006 None:intergenic
AATGAGCAGGAAGCCAGGGA+AGG 0.640830 5_3:+67854417 Msa0826940:intron
CTGTGCGCTTTGGCGACATG+AGG 0.642640 5_3:+67857999 Msa0826940:CDS
GTTCTTCTGAAACCCTGTTG+CGG 0.644145 5_3:-67856652 None:intergenic
CATCATGCAAGAAGAACTTG+AGG 0.646582 5_3:-67853122 None:intergenic
AGAAACTTTCTAGCAACGGA+CGG 0.646590 5_3:-67858638 None:intergenic
TCATATGAAGGGGTGTAGTG+AGG 0.651341 5_3:-67854633 None:intergenic
CTATCATTGTGGATTATACG+AGG 0.661047 5_3:+67858208 Msa0826940:CDS
CCTCCATGACATATCACACG+AGG 0.661063 5_3:-67853072 None:intergenic
ACAAGCACTCTATCTTCACT+CGG 0.662211 5_3:+67856696 Msa0826940:CDS
AGGCTCCAACGTTCAACACG+CGG 0.663386 5_3:+67853092 Msa0826940:CDS
AAACGAAAGAGGAACTACCA+TGG 0.668179 5_3:-67858677 None:intergenic
AAGCACACATAATGACATCA+GGG 0.674877 5_3:+67856968 Msa0826940:CDS
ATAGATACAGTAAGTAACAA+CGG 0.684169 5_3:+67858931 Msa0826940:three_prime_UTR
CTCCATGACATATCACACGA+GGG 0.687060 5_3:-67853071 None:intergenic
TCCATGACATATCACACGAG+GGG 0.694967 5_3:-67853070 None:intergenic
CATGTCGCCAAAGCGCACAG+TGG 0.713769 5_3:-67857996 None:intergenic
CCTCGTGTGATATGTCATGG+AGG 0.732138 5_3:+67853072 Msa0826940:CDS
GCTCAACATAGACTGGATCG+AGG 0.749948 5_3:+67857965 Msa0826940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTTATTTGTTTAATT+TGG + chr5_3:67853238-67853257 Msa0826940:intron 10.0%
!!! AATCACATTTTAATTATTAT+CGG - chr5_3:67855339-67855358 None:intergenic 10.0%
!! AATTGTAACTATTATTAATT+AGG + chr5_3:67857509-67857528 Msa0826940:intron 10.0%
!! CATTAAAATAAATAGAAAAT+AGG - chr5_3:67857872-67857891 None:intergenic 10.0%
!! ATTTAGTTATATATTTATAC+AGG + chr5_3:67858957-67858976 Msa0826940:three_prime_UTR 10.0%
!! TTTAGTTATATATTTATACA+GGG + chr5_3:67858958-67858977 Msa0826940:three_prime_UTR 10.0%
!!! TCAAATTTTAAGATTGTTTT+TGG + chr5_3:67853207-67853226 Msa0826940:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr5_3:67853388-67853407 None:intergenic 15.0%
!! AGATTAGATTTATTGAATAA+AGG + chr5_3:67853772-67853791 Msa0826940:intron 15.0%
!! GATTAGATTTATTGAATAAA+GGG + chr5_3:67853773-67853792 Msa0826940:intron 15.0%
!! ATAGTATAATGTATTTAAGA+TGG + chr5_3:67853805-67853824 Msa0826940:intron 15.0%
!! TTTAAACGAAAAATGAAATA+AGG - chr5_3:67853920-67853939 None:intergenic 15.0%
!! ATACTCATAAATTTAATATG+TGG - chr5_3:67856731-67856750 None:intergenic 15.0%
!!! ATACAAAAACCTTATTTTTA+AGG + chr5_3:67857771-67857790 Msa0826940:CDS 15.0%
!!! TACAAAAACCTTATTTTTAA+GGG + chr5_3:67857772-67857791 Msa0826940:CDS 15.0%
!! AAATAAATAGAAAATAGGAT+AGG - chr5_3:67857867-67857886 None:intergenic 15.0%
!! TATAAATAAACTGTAATATC+AGG - chr5_3:67859099-67859118 None:intergenic 15.0%
!! TTGGAATATATTGAAAAAAA+TGG + chr5_3:67859143-67859162 Msa0826940:three_prime_UTR 15.0%
!! AAATGAATTCAAATCTTTGT+AGG - chr5_3:67853496-67853515 None:intergenic 20.0%
!!! GAAATTTACAAGTTTTCATT+TGG + chr5_3:67854336-67854355 Msa0826940:intron 20.0%
!!! AATAATCTTAATTTGTTGAG+TGG + chr5_3:67854384-67854403 Msa0826940:intron 20.0%
!!! TATCATCTTAAATTTAGGTT+GGG - chr5_3:67854860-67854879 None:intergenic 20.0%
!! ATATCATCTTAAATTTAGGT+TGG - chr5_3:67854861-67854880 None:intergenic 20.0%
!! TCTCATATCATCTTAAATTT+AGG - chr5_3:67854865-67854884 None:intergenic 20.0%
!! AGTCAAATGTCTTAAAATTT+GGG - chr5_3:67855009-67855028 None:intergenic 20.0%
!! TATTAAGTATTAACCACAAA+AGG + chr5_3:67855039-67855058 Msa0826940:intron 20.0%
!! ATTGACCTTGTTAAAATAAT+AGG + chr5_3:67855898-67855917 Msa0826940:intron 20.0%
!! TTGACCTTGTTAAAATAATA+GGG + chr5_3:67855899-67855918 Msa0826940:intron 20.0%
!!! AAAACCCTATTATTTTAACA+AGG - chr5_3:67855906-67855925 None:intergenic 20.0%
!!! ACATACCAAAATAAAGTTTT+GGG - chr5_3:67856257-67856276 None:intergenic 20.0%
!!! TACATACCAAAATAAAGTTT+TGG - chr5_3:67856258-67856277 None:intergenic 20.0%
!!! ATTTTGGTATGTAGTTAATT+AGG + chr5_3:67856265-67856284 Msa0826940:intron 20.0%
!! TCTTCTAATTAATAAAGTCT+TGG + chr5_3:67856382-67856401 Msa0826940:intron 20.0%
!! ATCTATTTACAAATTACATG+TGG - chr5_3:67856612-67856631 None:intergenic 20.0%
!!! GATATTTTTAATGTTCCTAA+AGG + chr5_3:67856913-67856932 Msa0826940:CDS 20.0%
!! GAAAAAATGTACACATAATT+TGG - chr5_3:67857071-67857090 None:intergenic 20.0%
!! TTATCCTAATTAATAAACCA+AGG - chr5_3:67857491-67857510 None:intergenic 20.0%
!! AAAACTAAAACAGCTTAATA+TGG - chr5_3:67857672-67857691 None:intergenic 20.0%
!!! TGATATATTTTTTCCAGATT+TGG + chr5_3:67858299-67858318 Msa0826940:intron 20.0%
!! AAAATATGTGATTAACAACT+TGG + chr5_3:67859124-67859143 Msa0826940:three_prime_UTR 20.0%
! ATGAATAAGAAAATGAAGGA+GGG - chr5_3:67853050-67853069 None:intergenic 25.0%
! AATTCATGTTAAATGAAGCT+TGG + chr5_3:67853273-67853292 Msa0826940:intron 25.0%
!! TATAATTTGTCATCCTGTAA+TGG + chr5_3:67853303-67853322 Msa0826940:intron 25.0%
!!! TGATAGTATGTTACTTTGTT+TGG + chr5_3:67853828-67853847 Msa0826940:intron 25.0%
! TACAGAAAATCAAGCAAATT+AGG - chr5_3:67853871-67853890 None:intergenic 25.0%
! TCAAAATGTTTGATTCATGA+AGG + chr5_3:67853952-67853971 Msa0826940:intron 25.0%
! TATGGTACATGTTTGAAAAA+TGG + chr5_3:67853997-67854016 Msa0826940:intron 25.0%
!! TGTTTGAAAAATGGACTTAA+TGG + chr5_3:67854006-67854025 Msa0826940:intron 25.0%
!! AAACAAGTCTTTTCTCTATT+TGG - chr5_3:67854043-67854062 None:intergenic 25.0%
!! TTGTTTGTTGATGTTATTGA+TGG + chr5_3:67854057-67854076 Msa0826940:intron 25.0%
! TTGATATTGAGGAAAAATGT+GGG + chr5_3:67854154-67854173 Msa0826940:intron 25.0%
! AAGATTAGATGATCTTTCAA+TGG + chr5_3:67854602-67854621 Msa0826940:CDS 25.0%
!! AAGATTTTTGTATGTTCACA+AGG + chr5_3:67854689-67854708 Msa0826940:intron 25.0%
!!! TCATACAAAATTGACTTGTA+AGG - chr5_3:67854827-67854846 None:intergenic 25.0%
!! CAATTTTGTATGATTGAGAT+TGG + chr5_3:67854834-67854853 Msa0826940:intron 25.0%
! CAGTCAAATGTCTTAAAATT+TGG - chr5_3:67855010-67855029 None:intergenic 25.0%
!!! GAATTCTGAAGCATTATTTT+AGG + chr5_3:67855067-67855086 Msa0826940:intron 25.0%
! CATTGAAAGATCACAATATA+AGG - chr5_3:67855479-67855498 None:intergenic 25.0%
! TACCTATAATCTTATCAACT+TGG - chr5_3:67855502-67855521 None:intergenic 25.0%
! AGAATTGATATGATTTGAAG+AGG - chr5_3:67855665-67855684 None:intergenic 25.0%
!!! AAATAATAGGGTTTTAGATG+TGG + chr5_3:67855911-67855930 Msa0826940:intron 25.0%
! AGGAAAAATAGATTGAATTG+TGG + chr5_3:67855941-67855960 Msa0826940:intron 25.0%
! AACTTGACATTAAGAACATT+AGG - chr5_3:67856067-67856086 None:intergenic 25.0%
!!! AGTATAGTTTTGTGTTTGAT+AGG - chr5_3:67856152-67856171 None:intergenic 25.0%
! CAATTAGAAGTAGTTCATAA+CGG + chr5_3:67856214-67856233 Msa0826940:intron 25.0%
! TAAATTTATGAGTATGCAAG+TGG + chr5_3:67856736-67856755 Msa0826940:intron 25.0%
! TTTCTGCATCAAAATACAAA+AGG - chr5_3:67856879-67856898 None:intergenic 25.0%
!!! GTGTACATTTTTTCTAGTTT+TGG + chr5_3:67857077-67857096 Msa0826940:intron 25.0%
! TTGAGTGACTCTTAAAATTT+GGG + chr5_3:67857157-67857176 Msa0826940:intron 25.0%
! AAATTATTGTGACTTCTATG+TGG - chr5_3:67857426-67857445 None:intergenic 25.0%
! TTATATGAGAATATTCCAAG+AGG + chr5_3:67857604-67857623 Msa0826940:intron 25.0%
! GAATATATTATGAAACTCAG+AGG - chr5_3:67857647-67857666 None:intergenic 25.0%
! TTTGTATGATCATGATGAAA+AGG - chr5_3:67857758-67857777 None:intergenic 25.0%
! ATTGTCTTAAAGTTTGTCAA+CGG + chr5_3:67857911-67857930 Msa0826940:intron 25.0%
! AATATCAGAAAGTTTGACAA+AGG - chr5_3:67858088-67858107 None:intergenic 25.0%
! ATATCATTCATGCATTGTAT+AGG - chr5_3:67858285-67858304 None:intergenic 25.0%
! TTCAGTTTATTTGGAAAGAA+GGG - chr5_3:67858471-67858490 None:intergenic 25.0%
! ATTCAGTTTATTTGGAAAGA+AGG - chr5_3:67858472-67858491 None:intergenic 25.0%
! CACATAACATTCAGTTTATT+TGG - chr5_3:67858480-67858499 None:intergenic 25.0%
! AAATGAAAGCTAATAGTTCA+TGG + chr5_3:67858745-67858764 Msa0826940:three_prime_UTR 25.0%
! ATAGATACAGTAAGTAACAA+CGG + chr5_3:67858931-67858950 Msa0826940:three_prime_UTR 25.0%
! TTATTATACTGTAAGAACAC+TGG - chr5_3:67859009-67859028 None:intergenic 25.0%
! TAAACTGTAATATCAGGTAA+AGG - chr5_3:67859093-67859112 None:intergenic 25.0%
GATGAATAAGAAAATGAAGG+AGG - chr5_3:67853051-67853070 None:intergenic 30.0%
!!! AAGACATGAGTTTTTTACTC+TGG - chr5_3:67853181-67853200 None:intergenic 30.0%
AAACAAAAATCCACCATTAC+AGG - chr5_3:67853319-67853338 None:intergenic 30.0%
TTTGATACATCTCAAAACAC+AGG + chr5_3:67853344-67853363 Msa0826940:intron 30.0%
TTGATACATCTCAAAACACA+GGG + chr5_3:67853345-67853364 Msa0826940:intron 30.0%
! ATTTGCTTGATTTTCTGTAG+TGG + chr5_3:67853872-67853891 Msa0826940:intron 30.0%
! TTTGCTTGATTTTCTGTAGT+GGG + chr5_3:67853873-67853892 Msa0826940:intron 30.0%
! GTGTTTACTCTGATTAGTTA+TGG + chr5_3:67853979-67853998 Msa0826940:intron 30.0%
GTCGTGTTAATTACAATCAA+CGG + chr5_3:67854092-67854111 Msa0826940:intron 30.0%
!! ACGGTTCTAAATTGTAATTG+AGG + chr5_3:67854111-67854130 Msa0826940:intron 30.0%
CTAAATTGTAATTGAGGTTG+AGG + chr5_3:67854117-67854136 Msa0826940:intron 30.0%
CTTGATATTGAGGAAAAATG+TGG + chr5_3:67854153-67854172 Msa0826940:intron 30.0%
!! CCTCTAAAACTGTTATATTG+CGG + chr5_3:67854226-67854245 Msa0826940:intron 30.0%
!! GTGTGAATAGTTCTAAATTG+CGG - chr5_3:67854271-67854290 None:intergenic 30.0%
!! ATTAACAGGCATGTTGATTT+GGG + chr5_3:67854495-67854514 Msa0826940:CDS 30.0%
ATCATCTAATCTTGAAACGA+AGG - chr5_3:67854595-67854614 None:intergenic 30.0%
! TATGCTCTCTAAAAACTTCT+CGG - chr5_3:67854667-67854686 None:intergenic 30.0%
! CAGAATTCAAAATCCTTTTG+TGG - chr5_3:67855055-67855074 None:intergenic 30.0%
GAAACAATTAGAGGAACATA+TGG - chr5_3:67855110-67855129 None:intergenic 30.0%
AGGCTCAAATAGTAACAATT+AGG + chr5_3:67855133-67855152 Msa0826940:intron 30.0%
GTAACAATTAGGTTCACTTT+AGG + chr5_3:67855144-67855163 Msa0826940:intron 30.0%
!! TGCCAAGTTGATAAGATTAT+AGG + chr5_3:67855497-67855516 Msa0826940:intron 30.0%
AAACTCTCATAATGCCAAAA+AGG + chr5_3:67855571-67855590 Msa0826940:intron 30.0%
AACTCTCATAATGCCAAAAA+GGG + chr5_3:67855572-67855591 Msa0826940:intron 30.0%
TGATATGATTTGAAGAGGTA+TGG - chr5_3:67855660-67855679 None:intergenic 30.0%
AATACCATTCTTATCACTTC+AGG + chr5_3:67855811-67855830 Msa0826940:intron 30.0%
AGGTTTAACAATATTGAGGT+GGG - chr5_3:67856033-67856052 None:intergenic 30.0%
! TCTGAGGTTTAACAATATTG+AGG - chr5_3:67856037-67856056 None:intergenic 30.0%
GTTCTTAATGTCAAGTTAGA+AGG + chr5_3:67856070-67856089 Msa0826940:intron 30.0%
TAATGTATGTTGCATGTTCT+AGG + chr5_3:67856118-67856137 Msa0826940:intron 30.0%
GAACTACTTCTAATTGAGTA+GGG - chr5_3:67856210-67856229 None:intergenic 30.0%
TGAACTACTTCTAATTGAGT+AGG - chr5_3:67856211-67856230 None:intergenic 30.0%
! TTAATAAAGTCTTGGTGACA+TGG + chr5_3:67856390-67856409 Msa0826940:intron 30.0%
TTACAAACACGTATGTAATG+TGG + chr5_3:67856507-67856526 Msa0826940:intron 30.0%
GATTAACTATTTCAAACCTC+TGG + chr5_3:67856629-67856648 Msa0826940:intron 30.0%
TTTACTTTAATGAATCGAGC+AGG + chr5_3:67856774-67856793 Msa0826940:intron 30.0%
! TTCTGAAAATGCTTCGTTTA+TGG + chr5_3:67856851-67856870 Msa0826940:CDS 30.0%
TCTGAAAATGCTTCGTTTAT+GGG + chr5_3:67856852-67856871 Msa0826940:CDS 30.0%
GTTGAGTGACTCTTAAAATT+TGG + chr5_3:67857156-67857175 Msa0826940:intron 30.0%
ATAACTCAATCCTACAAAAC+CGG + chr5_3:67857185-67857204 Msa0826940:intron 30.0%
!! ATCTTATAAACCGGTTTTGT+AGG - chr5_3:67857198-67857217 None:intergenic 30.0%
! AAAACCGGTTTATAAGATGA+GGG + chr5_3:67857200-67857219 Msa0826940:intron 30.0%
GTCTTGCCATCTTAAAAATT+GGG + chr5_3:67857304-67857323 Msa0826940:intron 30.0%
AGAAGTCACAATAATTTACG+TGG + chr5_3:67857429-67857448 Msa0826940:intron 30.0%
TCACAATAATTTACGTGGTT+CGG + chr5_3:67857434-67857453 Msa0826940:intron 30.0%
TGCACCTTGGTTTATTAATT+AGG + chr5_3:67857484-67857503 Msa0826940:intron 30.0%
TGATAACATTGTTATCCTCT+TGG - chr5_3:67857622-67857641 None:intergenic 30.0%
!! GGATTAGCTTTAAACAATCT+TGG - chr5_3:67858372-67858391 None:intergenic 30.0%
TCGGATGAATCAAATTACAT+AGG - chr5_3:67858393-67858412 None:intergenic 30.0%
ATGAGTTCTGCAAAAATGAA+TGG - chr5_3:67858505-67858524 None:intergenic 30.0%
! ACAACATCAACGAAGAATTT+TGG + chr5_3:67858708-67858727 Msa0826940:three_prime_UTR 30.0%
CAATCTTACATGTAAAAACG+AGG + chr5_3:67858858-67858877 Msa0826940:three_prime_UTR 30.0%
! GAACAAGATTTTCCAACAAA+TGG + chr5_3:67858897-67858916 Msa0826940:three_prime_UTR 30.0%
TATATTTATACAGGGAGCAA+AGG + chr5_3:67858966-67858985 Msa0826940:three_prime_UTR 30.0%
AGAATTTACATGAACATCAC+AGG - chr5_3:67859056-67859075 None:intergenic 30.0%
AGAATCAGAGTTTAGTGATG+AGG - chr5_3:67852914-67852933 None:intergenic 35.0%
CTAAACTCTGATTCTCTATC+TGG + chr5_3:67852919-67852938 Msa0826940:five_prime_UTR 35.0%
AAAATGAAGGAGGGCAAAAT+TGG - chr5_3:67853041-67853060 None:intergenic 35.0%
GGGGATGAATAAGAAAATGA+AGG - chr5_3:67853054-67853073 None:intergenic 35.0%
AATTTGTCATCCTGTAATGG+TGG + chr5_3:67853306-67853325 Msa0826940:intron 35.0%
ATCATATCATACGTCAGAGT+TGG + chr5_3:67853422-67853441 Msa0826940:intron 35.0%
ACACCTTTGATCATAAGTGT+AGG + chr5_3:67853469-67853488 Msa0826940:intron 35.0%
TGTATCAGTGTTTCATAGCA+TGG - chr5_3:67853640-67853659 None:intergenic 35.0%
! AGTGATTGAATGTAGCTTTG+TGG + chr5_3:67853696-67853715 Msa0826940:intron 35.0%
! CTTGAGATTAAAGGTGTATC+TGG - chr5_3:67853738-67853757 None:intergenic 35.0%
TTCTCTATTTGGATCACTTG+AGG - chr5_3:67854032-67854051 None:intergenic 35.0%
TGTCGCAAATCTTGATATTG+AGG + chr5_3:67854143-67854162 Msa0826940:intron 35.0%
AGGAAAAATGTGGGCAATTA+TGG + chr5_3:67854163-67854182 Msa0826940:intron 35.0%
!! CCGCAATATAACAGTTTTAG+AGG - chr5_3:67854229-67854248 None:intergenic 35.0%
!! TTCATTTGGTTCTGAACTTC+AGG + chr5_3:67854350-67854369 Msa0826940:intron 35.0%
! TGGTTGATTTATGAATGAGC+AGG + chr5_3:67854404-67854423 Msa0826940:intron 35.0%
AAACCAGCATTTGCATTAAC+AGG + chr5_3:67854481-67854500 Msa0826940:CDS 35.0%
! CATTAACAGGCATGTTGATT+TGG + chr5_3:67854494-67854513 Msa0826940:CDS 35.0%
TTCTCTGGTATCACATTCAT+CGG + chr5_3:67854551-67854570 Msa0826940:CDS 35.0%
! ATGCTCTCTAAAAACTTCTC+GGG - chr5_3:67854666-67854685 None:intergenic 35.0%
AATGAAACAAGCATACAGCT+AGG - chr5_3:67854736-67854755 None:intergenic 35.0%
! CCGTTTGTAACTCATTTTCA+GGG - chr5_3:67854791-67854810 None:intergenic 35.0%
CCCTGAAAATGAGTTACAAA+CGG + chr5_3:67854788-67854807 Msa0826940:intron 35.0%
CCTGAAAATGAGTTACAAAC+GGG + chr5_3:67854789-67854808 Msa0826940:intron 35.0%
AGAACCTATCCAAGATGTAT+TGG + chr5_3:67854882-67854901 Msa0826940:intron 35.0%
GAACCTATCCAAGATGTATT+GGG + chr5_3:67854883-67854902 Msa0826940:intron 35.0%
AACCTATCCAAGATGTATTG+GGG + chr5_3:67854884-67854903 Msa0826940:intron 35.0%
! GTTCCTCTAATTGTTTCTTG+AGG + chr5_3:67855113-67855132 Msa0826940:intron 35.0%
ACACCTTCAATCAGAAGTTT+CGG + chr5_3:67855412-67855431 Msa0826940:intron 35.0%
ACAATATAAGGAGACTAGGA+TGG - chr5_3:67855467-67855486 None:intergenic 35.0%
GATCACAATATAAGGAGACT+AGG - chr5_3:67855471-67855490 None:intergenic 35.0%
!! TATGAGAGTTTTGTGCATAG+AGG - chr5_3:67855562-67855581 None:intergenic 35.0%
TCATAATGCCAAAAAGGGAA+AGG + chr5_3:67855577-67855596 Msa0826940:intron 35.0%
! TCATTTTGCCTTTCCCTTTT+TGG - chr5_3:67855588-67855607 None:intergenic 35.0%
AAAAGGGAAAGGCAAAATGA+AGG + chr5_3:67855588-67855607 Msa0826940:intron 35.0%
GAAACAAGTGAGTGAGAAAT+AGG - chr5_3:67855693-67855712 None:intergenic 35.0%
TGTTTGCCAAAGTTTACGTT+AGG - chr5_3:67855721-67855740 None:intergenic 35.0%
TTCTCCTGAAGTGATAAGAA+TGG - chr5_3:67855818-67855837 None:intergenic 35.0%
TTCTTATCACTTCAGGAGAA+AGG + chr5_3:67855818-67855837 Msa0826940:intron 35.0%
!!! TAATAGGGTTTTAGATGTGG+AGG + chr5_3:67855914-67855933 Msa0826940:intron 35.0%
!!! AATAGGGTTTTAGATGTGGA+GGG + chr5_3:67855915-67855934 Msa0826940:intron 35.0%
!! GAAAAGGTTCTTTTGGAAGA+TGG + chr5_3:67855993-67856012 Msa0826940:intron 35.0%
GAGGTTTAACAATATTGAGG+TGG - chr5_3:67856034-67856053 None:intergenic 35.0%
AACATTAGGTATAGACTCTG+AGG - chr5_3:67856053-67856072 None:intergenic 35.0%
!! AACTCTCCACTTTTGACAAA+TGG + chr5_3:67856177-67856196 Msa0826940:intron 35.0%
TCATCTCCATTTGTCAAAAG+TGG - chr5_3:67856186-67856205 None:intergenic 35.0%
!! GTTGGCCCAAAACTTTATTT+TGG + chr5_3:67856249-67856268 Msa0826940:intron 35.0%
! AAGTAATGCAGAGCAGATTT+TGG + chr5_3:67856302-67856321 Msa0826940:intron 35.0%
CAAAGCATAATCAATGCACT+AGG - chr5_3:67856348-67856367 None:intergenic 35.0%
! AAGATACGAGTAGTAGCTTT+TGG + chr5_3:67856442-67856461 Msa0826940:intron 35.0%
AAGAACCAGTGCAAATCTAT+TGG + chr5_3:67856669-67856688 Msa0826940:CDS 35.0%
TATATAAGTGACAGCATTGC+AGG - chr5_3:67856823-67856842 None:intergenic 35.0%
CTGAAAATGCTTCGTTTATG+GGG + chr5_3:67856853-67856872 Msa0826940:CDS 35.0%
TTCAGCTTATGATAGCCTTT+AGG - chr5_3:67856931-67856950 None:intergenic 35.0%
CTATCATAAGCTGAAAAGCA+AGG + chr5_3:67856936-67856955 Msa0826940:CDS 35.0%
AAGCACACATAATGACATCA+GGG + chr5_3:67856968-67856987 Msa0826940:CDS 35.0%
AATGACATCAGGGAATCTAT+TGG + chr5_3:67856978-67856997 Msa0826940:CDS 35.0%
CTTCTTTCATTTCCACTATC+TGG + chr5_3:67857026-67857045 Msa0826940:intron 35.0%
GGGAGCAATTATACTTCTTA+TGG - chr5_3:67857122-67857141 None:intergenic 35.0%
ACTCAACAACAATGCTTGAT+CGG - chr5_3:67857143-67857162 None:intergenic 35.0%
AGTGACTCTTAAAATTTGGG+TGG + chr5_3:67857160-67857179 Msa0826940:intron 35.0%
! CAAAACCGGTTTATAAGATG+AGG + chr5_3:67857199-67857218 Msa0826940:intron 35.0%
GGTCTTGCCATCTTAAAAAT+TGG + chr5_3:67857303-67857322 Msa0826940:intron 35.0%
!! GCTCAACCCAATTTTTAAGA+TGG - chr5_3:67857313-67857332 None:intergenic 35.0%
AAAACCGACTGGTAAGATAA+GGG + chr5_3:67857348-67857367 Msa0826940:intron 35.0%
AAGATCCTAGGTGTGAAATA+CGG - chr5_3:67857388-67857407 None:intergenic 35.0%
! TTGTTTTCCACTAAGATCCT+AGG - chr5_3:67857400-67857419 None:intergenic 35.0%
CACAATAATTTACGTGGTTC+GGG + chr5_3:67857435-67857454 Msa0826940:intron 35.0%
CAATTTACTTACAAGCTGTG+AGG - chr5_3:67857581-67857600 None:intergenic 35.0%
AGACTTAACATGAGTGCTAA+AGG - chr5_3:67857695-67857714 None:intergenic 35.0%
! ATAATCTGAAGCATGCATTC+TGG + chr5_3:67857732-67857751 Msa0826940:CDS 35.0%
ATGTGCTGCCCTTAAAAATA+AGG - chr5_3:67857783-67857802 None:intergenic 35.0%
! GTTGACAGATCTGATTTTGT+TGG + chr5_3:67857815-67857834 Msa0826940:CDS 35.0%
! GATCTGATTTTGTTGGAGAA+AGG + chr5_3:67857822-67857841 Msa0826940:CDS 35.0%
! ACAGTATTGAGAAAGAAGAG+AGG - chr5_3:67858061-67858080 None:intergenic 35.0%
GATCATTTGTAACGAGGATA+AGG - chr5_3:67858157-67858176 None:intergenic 35.0%
CATTTGGATCATTTGTAACG+AGG - chr5_3:67858163-67858182 None:intergenic 35.0%
CTGTAATCTCTTAGCTCATT+TGG - chr5_3:67858179-67858198 None:intergenic 35.0%
CGTATAATCCACAATGATAG+AGG - chr5_3:67858208-67858227 None:intergenic 35.0%
! CTATCATTGTGGATTATACG+AGG + chr5_3:67858208-67858227 Msa0826940:CDS 35.0%
! GTTATAGTACCTTTTGTTCC+TGG - chr5_3:67858259-67858278 None:intergenic 35.0%
! TCGCGTTATTAGTTTATCGA+CGG - chr5_3:67858582-67858601 None:intergenic 35.0%
! ACCAAGAAACTTTCTAGCAA+CGG - chr5_3:67858645-67858664 None:intergenic 35.0%
! TTGGTAATAACTCTGATCCA+TGG + chr5_3:67858660-67858679 Msa0826940:CDS 35.0%
!! CATCAACGAAGAATTTTGGT+CGG + chr5_3:67858712-67858731 Msa0826940:three_prime_UTR 35.0%
TCTGTTGTCTTTCCATTTGT+TGG - chr5_3:67858912-67858931 None:intergenic 35.0%
ACTGTAAGAACACTGGTAAT+AGG - chr5_3:67859002-67859021 None:intergenic 35.0%
GAAAAAAATGGAACCGTGAA+AGG + chr5_3:67859155-67859174 Msa0826940:three_prime_UTR 35.0%
GTAGAGAAGAAAGAGGTTGT+GGG - chr5_3:67853006-67853025 None:intergenic 40.0%
TGTAGAGAAGAAAGAGGTTG+TGG - chr5_3:67853007-67853026 None:intergenic 40.0%
GGAGAATGTAGAGAAGAAAG+AGG - chr5_3:67853013-67853032 None:intergenic 40.0%
AGGAGGGCAAAATTGGAATT+TGG - chr5_3:67853034-67853053 None:intergenic 40.0%
CATCATGCAAGAAGAACTTG+AGG - chr5_3:67853125-67853144 None:intergenic 40.0%
GGACCTACACTTATGATCAA+AGG - chr5_3:67853475-67853494 None:intergenic 40.0%
AAATCTAATCTCTGCAGCAC+TGG - chr5_3:67853763-67853782 None:intergenic 40.0%
!! TTCTGTAGTGGGTGTATTAC+AGG + chr5_3:67853884-67853903 Msa0826940:intron 40.0%
ATGCCTGTTAATGCAAATGC+TGG - chr5_3:67854487-67854506 None:intergenic 40.0%
! CCCGTTTGTAACTCATTTTC+AGG - chr5_3:67854792-67854811 None:intergenic 40.0%
GAGCCTCAAGAAACAATTAG+AGG - chr5_3:67855119-67855138 None:intergenic 40.0%
GGTCTGACACAAATCAATGT+CGG - chr5_3:67855386-67855405 None:intergenic 40.0%
! TTCTGATTGAAGGTGTGTCT+GGG - chr5_3:67855408-67855427 None:intergenic 40.0%
! ATTTGAAGAGGTATGGAACC+AGG - chr5_3:67855653-67855672 None:intergenic 40.0%
CTTCCTCCTAACGTAAACTT+TGG + chr5_3:67855712-67855731 Msa0826940:intron 40.0%
TTGCCAAAGTTTACGTTAGG+AGG - chr5_3:67855718-67855737 None:intergenic 40.0%
TTCCTCAAGGTTGAAAGTCT+GGG - chr5_3:67855976-67855995 None:intergenic 40.0%
TTTCCTCAAGGTTGAAAGTC+TGG - chr5_3:67855977-67855996 None:intergenic 40.0%
GACTTTCAACCTTGAGGAAA+AGG + chr5_3:67855977-67855996 Msa0826940:intron 40.0%
! CCAAAAGAACCTTTTCCTCA+AGG - chr5_3:67855989-67856008 None:intergenic 40.0%
! CCTTGAGGAAAAGGTTCTTT+TGG + chr5_3:67855986-67856005 Msa0826940:intron 40.0%
! TACGAGTAGTAGCTTTTGGA+TGG + chr5_3:67856446-67856465 Msa0826940:intron 40.0%
ACAAGCACTCTATCTTCACT+CGG + chr5_3:67856696-67856715 Msa0826940:CDS 40.0%
CTGATGTCATTATGTGTGCT+TGG - chr5_3:67856969-67856988 None:intergenic 40.0%
CAAGCACACATAATGACATC+AGG + chr5_3:67856967-67856986 Msa0826940:CDS 40.0%
! ATCAGGGAATCTATTGGTTG+AGG + chr5_3:67856984-67857003 Msa0826940:CDS 40.0%
GTTGAGAAGATACCAGATAG+TGG - chr5_3:67857041-67857060 None:intergenic 40.0%
CTCAACAACAATGCTTGATC+GGG - chr5_3:67857142-67857161 None:intergenic 40.0%
GACTCCCTCATCTTATAAAC+CGG - chr5_3:67857207-67857226 None:intergenic 40.0%
!! TCTTACCAGTCGGTTTTGTA+GGG - chr5_3:67857345-67857364 None:intergenic 40.0%
!! ATCTTACCAGTCGGTTTTGT+AGG - chr5_3:67857346-67857365 None:intergenic 40.0%
CAAAACCGACTGGTAAGATA+AGG + chr5_3:67857347-67857366 Msa0826940:intron 40.0%
GAATCCCTTATCTTACCAGT+CGG - chr5_3:67857355-67857374 None:intergenic 40.0%
TTTCACACCTAGGATCTTAG+TGG + chr5_3:67857390-67857409 Msa0826940:intron 40.0%
TTAAAGTTTGTCAACGGCAG+TGG + chr5_3:67857917-67857936 Msa0826940:intron 40.0%
CTCTCAAATTGCTTCAGCTA+AGG + chr5_3:67857940-67857959 Msa0826940:CDS 40.0%
GAGAAAGAAGAGAGGTAAAC+TGG - chr5_3:67858053-67858072 None:intergenic 40.0%
CGTTCACATGCTGAAAGAAT+AGG - chr5_3:67858134-67858153 None:intergenic 40.0%
AGCATTCTCCTCTATCATTG+TGG + chr5_3:67858197-67858216 Msa0826940:CDS 40.0%
TACTGCACATGATCCAAATC+TGG - chr5_3:67858315-67858334 None:intergenic 40.0%
TTATTTGGAAAGAAGGGACC+AGG - chr5_3:67858465-67858484 None:intergenic 40.0%
! ATCAGACTCTGAAAGTGACA+TGG + chr5_3:67858544-67858563 Msa0826940:CDS 40.0%
! AGAAACTTTCTAGCAACGGA+CGG - chr5_3:67858641-67858660 None:intergenic 40.0%
TCCGTTGCTAGAAAGTTTCT+TGG + chr5_3:67858641-67858660 Msa0826940:CDS 40.0%
AAACGAAAGAGGAACTACCA+TGG - chr5_3:67858680-67858699 None:intergenic 40.0%
!! GCAAGTTTTGCTGTGTTTTC+TGG + chr5_3:67858770-67858789 Msa0826940:three_prime_UTR 40.0%
! TGGACACAGCATTAGACTTT+TGG + chr5_3:67858790-67858809 Msa0826940:three_prime_UTR 40.0%
! GGACACAGCATTAGACTTTT+GGG + chr5_3:67858791-67858810 Msa0826940:three_prime_UTR 40.0%
TACAGAGCTTGCAAGCTATT+TGG - chr5_3:67858838-67858857 None:intergenic 40.0%
TCCATGACATATCACACGAG+GGG - chr5_3:67853073-67853092 None:intergenic 45.0%
CTCCATGACATATCACACGA+GGG - chr5_3:67853074-67853093 None:intergenic 45.0%
CATGATGCTCTTGATGCTTC+TGG + chr5_3:67853138-67853157 Msa0826940:CDS 45.0%
! GCACTGGCACTTGAGATTAA+AGG - chr5_3:67853747-67853766 None:intergenic 45.0%
ATGTGGGCAATTATGGCCAA+TGG + chr5_3:67854170-67854189 Msa0826940:intron 45.0%
ATGACATCGCAACGCAAGTA+CGG - chr5_3:67854198-67854217 None:intergenic 45.0%
GCGGTTTGCAGCATAAATTG+TGG - chr5_3:67854252-67854271 None:intergenic 45.0%
TTATGAATGAGCAGGAAGCC+AGG + chr5_3:67854412-67854431 Msa0826940:intron 45.0%
TATGAATGAGCAGGAAGCCA+GGG + chr5_3:67854413-67854432 Msa0826940:intron 45.0%
AGCTGCAGAAGATGATTCTC+TGG + chr5_3:67854536-67854555 Msa0826940:CDS 45.0%
!! CTTGAAACGAAGGCATCAAC+AGG - chr5_3:67854585-67854604 None:intergenic 45.0%
! TCATATGAAGGGGTGTAGTG+AGG - chr5_3:67854636-67854655 None:intergenic 45.0%
GGGCGATGAATCATATGAAG+GGG - chr5_3:67854646-67854665 None:intergenic 45.0%
CGGGCGATGAATCATATGAA+GGG - chr5_3:67854647-67854666 None:intergenic 45.0%
TCGGGCGATGAATCATATGA+AGG - chr5_3:67854648-67854667 None:intergenic 45.0%
! TCTGATTGAAGGTGTGTCTG+GGG - chr5_3:67855407-67855426 None:intergenic 45.0%
! CTTCTGATTGAAGGTGTGTC+TGG - chr5_3:67855409-67855428 None:intergenic 45.0%
CCACCGAAACTTCTGATTGA+AGG - chr5_3:67855418-67855437 None:intergenic 45.0%
CCTTCAATCAGAAGTTTCGG+TGG + chr5_3:67855415-67855434 Msa0826940:intron 45.0%
TTCGGTGGTACATAGTTCCT+CGG + chr5_3:67855430-67855449 Msa0826940:intron 45.0%
!! GTTTTAGATGTGGAGGGAAC+AGG + chr5_3:67855921-67855940 Msa0826940:intron 45.0%
TTCCCAGACTTTCAACCTTG+AGG + chr5_3:67855971-67855990 Msa0826940:intron 45.0%
TTCATAACGGCAGCCAACTA+GGG + chr5_3:67856227-67856246 Msa0826940:intron 45.0%
ACACCAGTTTCCAGTTTCCA+CGG - chr5_3:67856485-67856504 None:intergenic 45.0%
!! GTTCTTCTGAAACCCTGTTG+CGG - chr5_3:67856655-67856674 None:intergenic 45.0%
TGGCTCCAATAGATTTGCAC+TGG - chr5_3:67856677-67856696 None:intergenic 45.0%
! GAGTGAAGATAGAGTGCTTG+TGG - chr5_3:67856697-67856716 None:intergenic 45.0%
!!! CAGGTTTTGACTCATCGTTC+AGG + chr5_3:67856793-67856812 Msa0826940:intron 45.0%
! AGTTTGACTCGATGACCCAA+CGG + chr5_3:67857281-67857300 Msa0826940:intron 45.0%
TTAAGATGGCAAGACCCGTT+GGG - chr5_3:67857299-67857318 None:intergenic 45.0%
! TTTAAGATGGCAAGACCCGT+TGG - chr5_3:67857300-67857319 None:intergenic 45.0%
!! CGGTTTTGTAGGGTTGAGTT+AGG - chr5_3:67857335-67857354 None:intergenic 45.0%
TGTGACCGTATTTCACACCT+AGG + chr5_3:67857380-67857399 Msa0826940:intron 45.0%
TAAGGCTGCTCAACATAGAC+TGG + chr5_3:67857958-67857977 Msa0826940:CDS 45.0%
! ATAGACTGGATCGAGGTGTT+TGG + chr5_3:67857972-67857991 Msa0826940:CDS 45.0%
! ACAATACCTGACGAAGTACC+AGG + chr5_3:67858238-67858257 Msa0826940:CDS 45.0%
TTTGTTCCTGGTACTTCGTC+AGG - chr5_3:67858247-67858266 None:intergenic 45.0%
! GACGAAGTACCAGGAACAAA+AGG + chr5_3:67858247-67858266 Msa0826940:CDS 45.0%
TTTCACGCAGTAAGCGATCT+CGG - chr5_3:67858412-67858431 None:intergenic 45.0%
TGTCGCGATTGAAACGAAAG+AGG - chr5_3:67858691-67858710 None:intergenic 45.0%
! ATCAGGTAAAGGCGTAAAGC+TGG - chr5_3:67859082-67859101 None:intergenic 45.0%
TCCCCTCGTGTGATATGTCA+TGG + chr5_3:67853069-67853088 Msa0826940:CDS 50.0%
CCTCCATGACATATCACACG+AGG - chr5_3:67853075-67853094 None:intergenic 50.0%
CCTCGTGTGATATGTCATGG+AGG + chr5_3:67853072-67853091 Msa0826940:CDS 50.0%
GACACTTACACGTGAGACAC+TGG + chr5_3:67853444-67853463 Msa0826940:intron 50.0%
CTATTCACACACCTGCAGCT+TGG + chr5_3:67854281-67854300 Msa0826940:intron 50.0%
!! CAGCTTGGTGTGATGGAAGA+TGG + chr5_3:67854296-67854315 Msa0826940:intron 50.0%
CTGTGAACAGAATCCTTCCC+TGG - chr5_3:67854433-67854452 None:intergenic 50.0%
!! ACGAAGGCATCAACAGGAAG+TGG - chr5_3:67854579-67854598 None:intergenic 50.0%
GGCCCCAATACATCTTGGAT+AGG - chr5_3:67854889-67854908 None:intergenic 50.0%
TATTGGGGCCACCTGTTATC+AGG + chr5_3:67854899-67854918 Msa0826940:intron 50.0%
AGAGGAAGCCTGATAACAGG+TGG - chr5_3:67854910-67854929 None:intergenic 50.0%
GCTAGAGGAAGCCTGATAAC+AGG - chr5_3:67854913-67854932 None:intergenic 50.0%
! AAGAGGTATGGAACCAGGTG+GGG - chr5_3:67855648-67855667 None:intergenic 50.0%
! GAAGAGGTATGGAACCAGGT+GGG - chr5_3:67855649-67855668 None:intergenic 50.0%
! TGAAGAGGTATGGAACCAGG+TGG - chr5_3:67855650-67855669 None:intergenic 50.0%
GTTCATAACGGCAGCCAACT+AGG + chr5_3:67856226-67856245 Msa0826940:intron 50.0%
!!! AGTTTTGGGCCAACCCTAGT+TGG - chr5_3:67856243-67856262 None:intergenic 50.0%
ATGGATGTGAGTTGTCACCG+TGG + chr5_3:67856465-67856484 Msa0826940:intron 50.0%
TGAGTTGTCACCGTGGAAAC+TGG + chr5_3:67856472-67856491 Msa0826940:intron 50.0%
TCACCGTGGAAACTGGAAAC+TGG + chr5_3:67856479-67856498 Msa0826940:intron 50.0%
CACGTATGTAATGTGGCAGC+TGG + chr5_3:67856514-67856533 Msa0826940:intron 50.0%
TAAGCACATCCTTCACGCTC+AGG + chr5_3:67857245-67857264 Msa0826940:intron 50.0%
! GTTTGACTCGATGACCCAAC+GGG + chr5_3:67857282-67857301 Msa0826940:intron 50.0%
CTCAACCCTACAAAACCGAC+TGG + chr5_3:67857337-67857356 Msa0826940:intron 50.0%
GCTCAACATAGACTGGATCG+AGG + chr5_3:67857965-67857984 Msa0826940:CDS 50.0%
! GACATGAGGCGTTCATTGTC+TGG + chr5_3:67858013-67858032 Msa0826940:CDS 50.0%
GCTTACTGCGTGAAATGTCG+TGG + chr5_3:67858417-67858436 Msa0826940:intron 50.0%
CGTGGAAATACTACTGCTGC+AGG + chr5_3:67858435-67858454 Msa0826940:intron 50.0%
ACTACTGCTGCAGGATATCC+TGG + chr5_3:67858444-67858463 Msa0826940:intron 50.0%
GCGATTGAACCTCATCCAGT+TGG + chr5_3:67858598-67858617 Msa0826940:CDS 50.0%
AACCTCATCCAGTTGGAGCA+AGG + chr5_3:67858605-67858624 Msa0826940:CDS 50.0%
ATCCTTGCTCCAACTGGATG+AGG - chr5_3:67858610-67858629 None:intergenic 50.0%
TCATCCAGTTGGAGCAAGGA+TGG + chr5_3:67858609-67858628 Msa0826940:CDS 50.0%
AGGCTCCAACGTTCAACACG+CGG + chr5_3:67853092-67853111 Msa0826940:CDS 55.0%
AGTTGCCGCGTGTTGAACGT+TGG - chr5_3:67853100-67853119 None:intergenic 55.0%
CAACGCAAGTACGGCTCCAT+TGG - chr5_3:67854189-67854208 None:intergenic 55.0%
!! ACACCTGCAGCTTGGTGTGA+TGG + chr5_3:67854289-67854308 Msa0826940:intron 55.0%
CTTCCATCACACCAAGCTGC+AGG - chr5_3:67854295-67854314 None:intergenic 55.0%
AATGAGCAGGAAGCCAGGGA+AGG + chr5_3:67854417-67854436 Msa0826940:intron 55.0%
CAGGTGGCCCCAATACATCT+TGG - chr5_3:67854894-67854913 None:intergenic 55.0%
! GCGATTTAGAGCGTGGCTAG+AGG - chr5_3:67854928-67854947 None:intergenic 55.0%
! GGACTGTGCGATTTAGAGCG+TGG - chr5_3:67854935-67854954 None:intergenic 55.0%
AATCGCACAGTCCTGCGTGA+AGG + chr5_3:67854942-67854961 Msa0826940:intron 55.0%
ATCGCACAGTCCTGCGTGAA+GGG + chr5_3:67854943-67854962 Msa0826940:intron 55.0%
GGATGGTGCAAACATTGCCG+AGG - chr5_3:67855450-67855469 None:intergenic 55.0%
AGAGACAGAGAATCCCCACC+TGG + chr5_3:67855632-67855651 Msa0826940:intron 55.0%
TAACGGCAGCCAACTAGGGT+TGG + chr5_3:67856231-67856250 Msa0826940:intron 55.0%
TTCAAACCTCTGGCCGCAAC+AGG + chr5_3:67856639-67856658 Msa0826940:CDS 55.0%
TCAAACCTCTGGCCGCAACA+GGG + chr5_3:67856640-67856659 Msa0826940:CDS 55.0%
ACATCCTTCACGCTCAGGAC+TGG + chr5_3:67857250-67857269 Msa0826940:intron 55.0%
ATGTCCAGTCCTGAGCGTGA+AGG - chr5_3:67857257-67857276 None:intergenic 55.0%
AACCAAGGTGCATGCTCCTG+TGG - chr5_3:67857476-67857495 None:intergenic 55.0%
GTTTGGACCACTGTGCGCTT+TGG + chr5_3:67857989-67858008 Msa0826940:CDS 55.0%
GACTCCATCCTTGCTCCAAC+TGG - chr5_3:67858616-67858635 None:intergenic 55.0%
TCGCACAGTCCTGCGTGAAG+GGG + chr5_3:67854944-67854963 Msa0826940:intron 60.0%
ACACACTCACCCCTTCACGC+AGG - chr5_3:67854956-67854975 None:intergenic 60.0%
TGAAACCCTGTTGCGGCCAG+AGG - chr5_3:67856648-67856667 None:intergenic 60.0%
GACCTCTTGCCTTCGTCCAC+AGG + chr5_3:67857457-67857476 Msa0826940:intron 60.0%
CTCCTGTGGACGAAGGCAAG+AGG - chr5_3:67857462-67857481 None:intergenic 60.0%
GTGCATGCTCCTGTGGACGA+AGG - chr5_3:67857469-67857488 None:intergenic 60.0%
! GTCCACAGGAGCATGCACCT+TGG + chr5_3:67857471-67857490 Msa0826940:intron 60.0%
CATGTCGCCAAAGCGCACAG+TGG - chr5_3:67857999-67858018 None:intergenic 60.0%
CTGTGCGCTTTGGCGACATG+AGG + chr5_3:67857999-67858018 Msa0826940:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 67852910 67859178 67852910 ID=Msa0826940;Name=Msa0826940
chr5_3 mRNA 67852910 67859178 67852910 ID=Msa0826940-mRNA-1;Parent=Msa0826940;Name=Msa0826940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=66|0.85|0.75|1|1|1|8|493|428
chr5_3 exon 67852910 67853182 67852910 ID=Msa0826940-mRNA-1:exon:21214;Parent=Msa0826940-mRNA-1
chr5_3 exon 67854426 67854697 67854426 ID=Msa0826940-mRNA-1:exon:21215;Parent=Msa0826940-mRNA-1
chr5_3 exon 67856630 67856717 67856630 ID=Msa0826940-mRNA-1:exon:21216;Parent=Msa0826940-mRNA-1
chr5_3 exon 67856796 67857005 67856796 ID=Msa0826940-mRNA-1:exon:21217;Parent=Msa0826940-mRNA-1
chr5_3 exon 67857725 67857843 67857725 ID=Msa0826940-mRNA-1:exon:21218;Parent=Msa0826940-mRNA-1
chr5_3 exon 67857937 67858034 67857937 ID=Msa0826940-mRNA-1:exon:21219;Parent=Msa0826940-mRNA-1
chr5_3 exon 67858144 67858268 67858144 ID=Msa0826940-mRNA-1:exon:21220;Parent=Msa0826940-mRNA-1
chr5_3 exon 67858518 67859178 67858518 ID=Msa0826940-mRNA-1:exon:21221;Parent=Msa0826940-mRNA-1
chr5_3 five_prime_UTR 67852910 67852975 67852910 ID=Msa0826940-mRNA-1:five_prime_utr;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67852976 67853182 67852976 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67854426 67854697 67854426 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67856630 67856717 67856630 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67856796 67857005 67856796 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67857725 67857843 67857725 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67857937 67858034 67857937 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67858144 67858268 67858144 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 CDS 67858518 67858685 67858518 ID=Msa0826940-mRNA-1:cds;Parent=Msa0826940-mRNA-1
chr5_3 three_prime_UTR 67858686 67859178 67858686 ID=Msa0826940-mRNA-1:three_prime_utr;Parent=Msa0826940-mRNA-1
Gene Sequence

>Msa0826940

ATGTCTTGTGTCTCATCTTCTTCTCTTCCCACAACCTCTTTCTTCTCTACATTCTCCAAATTCCAATTTTGCCCTCCTTCATTTTCTTATTCATCCCCTCGTGTGATATGTCATGGAGGCTCCAACGTTCAACACGCGGCAACTGACCTCAAGTTCTTCTTGCATGATGCTCTTGATGCTTCTGGAATTGATACTGCTCATGCCAGAGAAGCCAGGGAAGGATTCTGTTCACAGATTAAGAGACTTACTGATATTGAGAAAGAAACCAGCATTTGCATTAACAGGCATGTTGATTTGGGTAGAACTGCTCTCTATATAGCTGCAGAAGATGATTCTCTGGTATCACATTCATCGGTACCACTTCCTGTTGATGCCTTCGTTTCAAGATTAGATGATCTTTCAATGGACTACTGTCCTCACTACACCCCTTCATATGATTCATCGCCCGAGAAGTTTTTAGAGAGCATAGAAAGATTTTTATTAACTATTTCAAACCTCTGGCCGCAACAGGGTTTCAGAAGAACCAGTGCAAATCTATTGGAGCCACAAGCACTCTATCTTCACTCGGTTTTGACTCATCGTTCAGGATCACCTGCAATGCTGTCACTTATATACTCAGAAATTCTGAAAATGCTTCGTTTATGGGGCCTTTTGTATTTTGATGCAGAAATTTTCTACCCTCATGATATTTTTAATGTTCCTAAAGGCTATCATAAGCTGAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAATCTATTGGTTGAGATATTAAATAATCTGAAGCATGCATTCTGGCCTTTTCATCATGATCATACAAAAACCTTATTTTTAAGGGCAGCACATGCTGCAAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGTGGCTCTCAAATTGCTTCAGCTAAGGCTGCTCAACATAGACTGGATCGAGGTGTTTGGACCACTGTGCGCTTTGGCGACATGAGGCGTTCATTGTCTGCATGTGAACGCCTTATCCTCGTTACAAATGATCCAAATGAGCTAAGAGATTACAGCATTCTCCTCTATCATTGTGGATTATACGAGGAGTCGCTACAATACCTGACGAAGTACCAGGAACAAAAGAACTCATCTACACAAGTGCTGACATCATCAGACTCTGAAAGTGACATGGAAGAAGATGCTGCCGTCGATAAACTAATAACGCGATTGAACCTCATCCAGTTGGAGCAAGGATGGAGTCAGCCGTCCGTTGCTAGAAAGTTTCTTGGTAATAACTCTGATCCATGGTAG

Protein sequence

>Msa0826940

MSCVSSSSLPTTSFFSTFSKFQFCPPSFSYSSPRVICHGGSNVQHAATDLKFFLHDALDASGIDTAHAREAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVSRLDDLSMDYCPHYTPSYDSSPEKFLESIERFLLTISNLWPQQGFRRTSANLLEPQALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMTSGNLLVEILNNLKHAFWPFHHDHTKTLFLRAAHAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTTVRFGDMRRSLSACERLILVTNDPNELRDYSILLYHCGLYEESLQYLTKYQEQKNSSTQVLTSSDSESDMEEDAAVDKLITRLNLIQLEQGWSQPSVARKFLGNNSDPW*