AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290590 MtrunA17_Chr2g0310601 98.956 479 5 0 1 479 1 479 0.0 936
Msa0290590 MtrunA17_Chr2g0310611 87.841 403 48 1 73 474 89 491 0.0 700
Msa0290590 MtrunA17_Chr2g0310621 85.427 398 58 0 77 474 4 401 0.0 684
Msa0290590 MtrunA17_Chr6g0457691 30.198 404 272 5 78 479 142 537 2.35e-48 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290590 AT1G56190.1 87.244 439 55 1 42 479 40 478 0.0 774
Msa0290590 AT3G12780.1 85.746 449 59 2 33 479 36 481 0.0 761
Msa0290590 AT1G56190.2 89.877 405 41 0 75 479 1 405 0.0 736
Msa0290590 AT1G79550.1 85.930 398 56 0 77 474 4 401 0.0 695
Msa0290590 AT1G79550.2 85.930 398 56 0 77 474 4 401 0.0 695

Find 195 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTATTTGAACTTATTTAT+TGG 0.169860 2_3:-38223691 Msa0290590:three_prime_UTR
AAGAGGTGCCAAGCTGTATT+TGG 0.198091 2_3:+38226139 None:intergenic
AGAACGATTGGGTGTGGTTT+GGG 0.198355 2_3:+38227971 None:intergenic
TGGGTGTGGTTTGGGGATTT+TGG 0.203943 2_3:+38227979 None:intergenic
GGGGAGGAGTGAGATGGTTG+TGG 0.281250 2_3:+38227817 None:intergenic
CGCTGCAGCTGACCCTTTGT+TGG 0.296291 2_3:-38227699 Msa0290590:CDS
AAGAACGATTGGGTGTGGTT+TGG 0.299575 2_3:+38227970 None:intergenic
TCCAAGGTCTCATCTAAAAT+TGG 0.303839 2_3:-38225122 Msa0290590:CDS
GGGAGGAGTGAGATGGTTGT+GGG 0.311165 2_3:+38227818 None:intergenic
GTCCATTCCATATGATGGTT+TGG 0.319459 2_3:+38224669 None:intergenic
GGATTATTGACAGGTTATTA+AGG 0.325099 2_3:-38225987 Msa0290590:intron
GGAATATTTATTTGAATTGA+TGG 0.325316 2_3:+38223768 None:intergenic
CACCGGTGGTGGTGCAAGTT+TGG 0.328292 2_3:-38224030 Msa0290590:CDS
ATTAAATATCTAATTCAAAA+TGG 0.335122 2_3:-38227473 Msa0290590:CDS
TGGGGTGGTGGATGGGGAAG+AGG 0.341920 2_3:+38227784 None:intergenic
TAGGAACTTGACTACCTTGT+TGG 0.343922 2_3:-38225191 Msa0290590:CDS
AGGAACTTGACTACCTTGTT+GGG 0.344781 2_3:-38225190 Msa0290590:CDS
AGTCATTCTTTCTAGTCATT+TGG 0.346742 2_3:-38227444 Msa0290590:intron
TCCAATGAGTTCGGAGAGCC+TGG 0.357814 2_3:+38226112 None:intergenic
CACTTTCTTTCCCTTCAATT+CGG 0.366247 2_3:+38227580 None:intergenic
TGAATTAGATATTTAATAGT+TGG 0.368159 2_3:+38227479 None:intergenic
TCCATTCCATATGATGGTTT+GGG 0.378519 2_3:+38224670 None:intergenic
TGACCCTTTGTTGGCGGTGC+AGG 0.383423 2_3:-38227690 Msa0290590:CDS
TATTTGGGAGTGACACCCTT+TGG 0.399527 2_3:+38226155 None:intergenic
TATTTGAAGCCATCTGTTGC+TGG 0.401801 2_3:-38225752 Msa0290590:CDS
TCCAATCCCATCCAACCATC+AGG 0.411142 2_3:+38224740 None:intergenic
CATTGGTCCATTCCATATGA+TGG 0.411281 2_3:+38224664 None:intergenic
GGAGGAGTGAGATGGTTGTG+GGG 0.411898 2_3:+38227819 None:intergenic
TGCTATCCCTGATGGTTGGA+TGG 0.424383 2_3:-38224747 Msa0290590:CDS
TGAGGAGAGTTGGACGCGGG+AGG 0.431117 2_3:+38227757 None:intergenic
TTGGAAGGCAAAGAGCTTCC+CGG 0.431964 2_3:-38224002 Msa0290590:CDS
AGAGGTGCCAAGCTGTATTT+GGG 0.433038 2_3:+38226140 None:intergenic
GCCCGCCCACTCCGCCGACT+TGG 0.433426 2_3:-38227725 Msa0290590:CDS
TGCAGCTGACCCTTTGTTGG+CGG 0.434584 2_3:-38227696 Msa0290590:CDS
GAGGAGTGAGATGGTTGTGG+GGG 0.435325 2_3:+38227820 None:intergenic
AAGGCCATTTGCGGCAATTG+TGG 0.436409 2_3:-38225150 Msa0290590:CDS
CCACCCACAATTGCCGCAAA+TGG 0.440518 2_3:+38225146 None:intergenic
TTCTGGACCAATACTGTCTT+CGG 0.442920 2_3:+38225964 None:intergenic
GGGCAGTATCAAGCCCAAAA+AGG 0.443174 2_3:-38225169 Msa0290590:CDS
GACTCCCTCTGTTGATGCAT+GGG 0.445361 2_3:+38225781 None:intergenic
CGAAGCCAAGTCGGCGGAGT+GGG 0.446914 2_3:+38227720 None:intergenic
GTAAGCGGGAGAGGAGTAAG+AGG 0.448191 2_3:-38227647 Msa0290590:CDS
ATGCATTCGGTACTGCTCAC+AGG 0.450363 2_3:-38225805 Msa0290590:CDS
TGGTGCAAGTTTGGAGCTAT+TGG 0.450844 2_3:-38224021 Msa0290590:CDS
AGCCAAGTCGGCGGAGTGGG+CGG 0.455059 2_3:+38227723 None:intergenic
TTAGTCTATTGCAAAGAAGT+TGG 0.455163 2_3:-38224153 Msa0290590:intron
GGAGAGTTGGACGCGGGAGG+GGG 0.455462 2_3:+38227760 None:intergenic
AAAGTTGACATCCTTCTTCT+CGG 0.456222 2_3:-38225077 Msa0290590:CDS
GCCAAGTCGGCGGAGTGGGC+GGG 0.460638 2_3:+38227724 None:intergenic
TTTGAGTGGTGCCGAATTGA+AGG 0.461063 2_3:-38227591 Msa0290590:CDS
GAATTGATGGCTTTCAGCCT+AGG 0.462253 2_3:+38223781 None:intergenic
CAAACCTGGCTGTTTGCATC+AGG 0.463412 2_3:+38224888 None:intergenic
CCCAGGCTCTCCGAACTCAT+TGG 0.464625 2_3:-38226113 Msa0290590:CDS
AAGAGGATTTAGTGGTGGGG+AGG 0.466020 2_3:+38227801 None:intergenic
AGGAGAGTTGGACGCGGGAG+GGG 0.467761 2_3:+38227759 None:intergenic
CCCTGATGGTTGGATGGGAT+TGG 0.470340 2_3:-38224741 Msa0290590:CDS
GTGAGGACAGTAAGCGGGAG+AGG 0.473119 2_3:-38227656 Msa0290590:CDS
AGGCCATTTGCGGCAATTGT+GGG 0.473545 2_3:-38225149 Msa0290590:CDS
GCTACACCAGTCGCCGTGTA+AGG 0.475076 2_3:-38223960 Msa0290590:exon
TAAAACATTCAATGAAGCAT+TGG 0.477391 2_3:-38224699 Msa0290590:CDS
CCTTGTAGAGGAAGATAAGT+TGG 0.479283 2_3:-38225000 Msa0290590:CDS
CACCTCAATTCCAATGAGTT+CGG 0.481790 2_3:+38226103 None:intergenic
AGAAGTAGAACTCCTCCGTC+TGG 0.481985 2_3:+38225917 None:intergenic
TGGGGAAGAGGATTTAGTGG+TGG 0.482996 2_3:+38227796 None:intergenic
ATACCACCCAAACCATCATA+TGG 0.484602 2_3:-38224676 Msa0290590:CDS
CTCCGAACTCATTGGAATTG+AGG 0.486645 2_3:-38226105 Msa0290590:intron
TGCTCCTGATGCAAACAGCC+AGG 0.489017 2_3:-38224892 Msa0290590:intron
GCTTGGCACCTCTTGTTCCC+AGG 0.490709 2_3:-38226130 Msa0290590:CDS
GAACGATTGGGTGTGGTTTG+GGG 0.490748 2_3:+38227972 None:intergenic
CCAACTTATCTTCCTCTACA+AGG 0.492018 2_3:+38225000 None:intergenic
TCATTCCTCCACCGAGAAGA+AGG 0.493393 2_3:+38225066 None:intergenic
CGCCGAGGAATGAGGAGAGT+TGG 0.494656 2_3:+38227747 None:intergenic
AAACTTATGGCAGCAACTGA+TGG 0.497654 2_3:+38223747 None:intergenic
GGTTGGATGGGATTGGACAT+TGG 0.502884 2_3:-38224734 Msa0290590:CDS
TCATCGAGGGCGAGAACACC+GGG 0.502939 2_3:+38223984 None:intergenic
CACCACCACCGGTGGATATG+TGG 0.503719 2_3:+38224039 None:intergenic
GACATCCTTCTTCTCGGTGG+AGG 0.504587 2_3:-38225071 Msa0290590:CDS
TGACTCCCTCTGTTGATGCA+TGG 0.505501 2_3:+38225780 None:intergenic
TGGGCGGGCGCCGAGGAATG+AGG 0.508092 2_3:+38227739 None:intergenic
AAATTGCCTTACACGGCGAC+TGG 0.508972 2_3:+38223954 None:intergenic
TTGGCCGACCTAAGTGGAAA+GGG 0.511148 2_3:-38224134 Msa0290590:CDS
GAGGAGAGTTGGACGCGGGA+GGG 0.512369 2_3:+38227758 None:intergenic
AGGAACAAAGGAAGAACGAT+TGG 0.512865 2_3:+38227959 None:intergenic
ATCATATGGAATGGACCAAT+GGG 0.515486 2_3:-38224662 Msa0290590:CDS
GGCGGTGCAGGTGGCGTCGA+AGG 0.517503 2_3:-38227678 Msa0290590:CDS
GGCAATTGTGGGTGGTTCCA+AGG 0.518184 2_3:-38225138 Msa0290590:CDS
AGGAGATTCTGTTGCAGCTG+TGG 0.521058 2_3:-38224090 Msa0290590:CDS
GGGGAAGAGGATTTAGTGGT+GGG 0.524758 2_3:+38227797 None:intergenic
GTCCAACTCTCCTCATTCCT+CGG 0.525102 2_3:-38227749 Msa0290590:CDS
GAGTGACACACCCTTTGCCT+TGG 0.526454 2_3:+38224950 None:intergenic
TTCATCGAGGGCGAGAACAC+CGG 0.526737 2_3:+38223983 None:intergenic
CTCCAAACTTGCACCACCAC+CGG 0.527384 2_3:+38224028 None:intergenic
CCCTTTGTTGGCGGTGCAGG+TGG 0.527923 2_3:-38227687 Msa0290590:CDS
ATTAAGGCCGAAGACAGTAT+TGG 0.529102 2_3:-38225971 Msa0290590:CDS
GGCGGAGTGGGCGGGCGCCG+AGG 0.530211 2_3:+38227732 None:intergenic
CCAGCATCTGCTATCCCTGA+TGG 0.534495 2_3:-38224755 Msa0290590:CDS
TTGTGAGAACACTGAAACCG+AGG 0.535903 2_3:+38223908 None:intergenic
GCCACCTGCACCGCCAACAA+AGG 0.536009 2_3:+38227686 None:intergenic
CATCTGCTATCCCTGATGGT+TGG 0.536047 2_3:-38224751 Msa0290590:CDS
GCTATCCCTGATGGTTGGAT+GGG 0.536600 2_3:-38224746 Msa0290590:CDS
CCACCTGCACCGCCAACAAA+GGG 0.536732 2_3:+38227687 None:intergenic
TCTGCGATCACCACATCACT+TGG 0.538211 2_3:+38224921 None:intergenic
TGCAGGTGGCGTCGAAGGTG+AGG 0.538726 2_3:-38227673 Msa0290590:CDS
AGAATATTACTGATGATACT+AGG 0.543997 2_3:-38227517 Msa0290590:CDS
GAGTTTGACAAGTTTGCTGT+TGG 0.546134 2_3:-38224632 Msa0290590:CDS
GTAGAACTCCTCCGTCTGGA+AGG 0.546631 2_3:+38225921 None:intergenic
ACCCAAACCATCATATGGAA+TGG 0.549209 2_3:-38224671 Msa0290590:CDS
CCATTTGCGGCAATTGTGGG+TGG 0.550750 2_3:-38225146 Msa0290590:CDS
CATCATATGGAATGGACCAA+TGG 0.552065 2_3:-38224663 Msa0290590:CDS
AAGAAGTTGGCCGACCTAAG+TGG 0.552641 2_3:-38224140 Msa0290590:CDS
GTTGCAGCTGTGGAGAAAGT+AGG 0.554074 2_3:-38224080 Msa0290590:CDS
CGAAGGTGAGGACAGTAAGC+GGG 0.555356 2_3:-38227661 Msa0290590:CDS
TTCTACTTCTTGAAAATGTG+AGG 0.555785 2_3:-38225904 Msa0290590:CDS
TGGTCCAGAAGTAGAAAAGT+TGG 0.556192 2_3:-38225951 Msa0290590:CDS
TGCATTCGGTACTGCTCACA+GGG 0.557008 2_3:-38225804 Msa0290590:CDS
ATTGCAAAAGCCAAGGCAAA+GGG 0.558692 2_3:-38224960 Msa0290590:CDS
ACTCTTGCTGCCAAGTGATG+TGG 0.558831 2_3:-38224931 Msa0290590:CDS
GCGAAGCCAAGTCGGCGGAG+TGG 0.559227 2_3:+38227719 None:intergenic
AATTGCAAAAGCCAAGGCAA+AGG 0.559292 2_3:-38224961 Msa0290590:CDS
AAGGCACAAGGTCTTGCAGT+TGG 0.559506 2_3:-38225029 Msa0290590:CDS
AAGCTGAAAATTGCCTTACA+CGG 0.560445 2_3:+38223947 None:intergenic
AGCCACATATCCACCGGTGG+TGG 0.561258 2_3:-38224041 Msa0290590:CDS
TCAAACTCAAACACTCCCAT+TGG 0.562382 2_3:+38224647 None:intergenic
CAAGTTTGCTGTTGGAACAG+AGG 0.563230 2_3:-38224624 Msa0290590:intron
TCGAAGGTGAGGACAGTAAG+CGG 0.566470 2_3:-38227662 Msa0290590:CDS
AGTGGTGGGGAGGAGTGAGA+TGG 0.566517 2_3:+38227811 None:intergenic
GGATGGGGAAGAGGATTTAG+TGG 0.567768 2_3:+38227793 None:intergenic
ATTCCATATGATGGTTTGGG+TGG 0.577654 2_3:+38224673 None:intergenic
AAATTTGCAGGGAAGGCCAA+AGG 0.578585 2_3:-38226171 Msa0290590:intron
TTGAGTGGTGCCGAATTGAA+GGG 0.582584 2_3:-38227590 Msa0290590:CDS
AGTAAGAGGAGTGGTGTCGA+TGG 0.583231 2_3:-38227633 Msa0290590:CDS
AAATTTACACTAACAAACTC+GGG 0.584120 2_3:+38223854 None:intergenic
CTGTATGTGAATGATGCATT+CGG 0.584611 2_3:-38225818 Msa0290590:CDS
TCCAGAAGTAGAAAAGTTGG+TGG 0.584684 2_3:-38225948 Msa0290590:CDS
AAAGGAAGAACGATTGGGTG+TGG 0.584748 2_3:+38227965 None:intergenic
CAGCTGCAGCGAAGCCAAGT+CGG 0.585809 2_3:+38227711 None:intergenic
GTTGGCCGACCTAAGTGGAA+AGG 0.587208 2_3:-38224135 Msa0290590:CDS
GGGAAGAGGATTTAGTGGTG+GGG 0.587400 2_3:+38227798 None:intergenic
AAAATTTACACTAACAAACT+CGG 0.588917 2_3:+38223853 None:intergenic
GATGTGGACGTGAGGAACAA+AGG 0.591498 2_3:+38227947 None:intergenic
CTGAATGAATGAATGTAGAG+GGG 0.592254 2_3:+38227910 None:intergenic
CACATACAGATCTGCGAGTG+CGG 0.592722 2_3:+38225832 None:intergenic
GCAAGTTTGGAGCTATTGGA+AGG 0.593757 2_3:-38224017 Msa0290590:CDS
CCATCAGGGATAGCAGATGC+TGG 0.593790 2_3:+38224755 None:intergenic
GTCATGAGCCACATATCCAC+CGG 0.595301 2_3:-38224047 Msa0290590:CDS
GGGGTGACAACTATTATTGG+AGG 0.595480 2_3:-38224113 Msa0290590:CDS
AATTTGCAGGGAAGGCCAAA+GGG 0.596112 2_3:-38226170 Msa0290590:intron
GGAACAAAGGAAGAACGATT+GGG 0.599505 2_3:+38227960 None:intergenic
CGGGAGAGGAGTAAGAGGAG+TGG 0.599596 2_3:-38227642 Msa0290590:CDS
GGAACTTGACTACCTTGTTG+GGG 0.602846 2_3:-38225189 Msa0290590:CDS
TAGAACTCCTCCGTCTGGAA+GGG 0.608774 2_3:+38225922 None:intergenic
ATATTCTGATTATCATCAAG+AGG 0.609805 2_3:+38227533 None:intergenic
GTGACAACTATTATTGGAGG+AGG 0.610339 2_3:-38224110 Msa0290590:CDS
AAAAGAAAACCAGCAACAGA+TGG 0.611850 2_3:+38225743 None:intergenic
TCGGAGAGCCTGGGAACAAG+AGG 0.613075 2_3:+38226122 None:intergenic
ACTGAATGAATGAATGTAGA+GGG 0.614323 2_3:+38227909 None:intergenic
TGTCTCTTATCGTTGAGATG+AGG 0.614873 2_3:+38228003 None:intergenic
GACTGGTGTAGCTTCATCGA+GGG 0.615596 2_3:+38223971 None:intergenic
AGTTGGTTCATCCCTTGTAG+AGG 0.617364 2_3:-38225012 Msa0290590:CDS
GGGAATATAGAAGAAAGATG+TGG 0.617404 2_3:+38227931 None:intergenic
AACACTAATTGCAAAAGCCA+AGG 0.618211 2_3:-38224967 Msa0290590:CDS
GTGGCTTCCCTTCCAGACGG+AGG 0.619373 2_3:-38225929 Msa0290590:CDS
GGATATGTGGCTCATGACAT+CGG 0.619929 2_3:+38224052 None:intergenic
TTGCTTGTAACTGTAAACCT+AGG 0.624625 2_3:-38223798 Msa0290590:three_prime_UTR
CAAACTTGCACCACCACCGG+TGG 0.628444 2_3:+38224031 None:intergenic
TTTACACTAACAAACTCGGG+AGG 0.628511 2_3:+38223857 None:intergenic
ACAACATAAACTCTTATACA+AGG 0.630082 2_3:+38223885 None:intergenic
CCAATCCCATCCAACCATCA+GGG 0.630942 2_3:+38224741 None:intergenic
TTACACTAACAAACTCGGGA+GGG 0.636995 2_3:+38223858 None:intergenic
TGTCACTCCCAAATACAGCT+TGG 0.637672 2_3:-38226147 Msa0290590:CDS
CACACACTCTCTCTCTACAA+TGG 0.637850 2_3:-38227855 Msa0290590:exon
TCGATGGCGAAGAAAAGTGT+GGG 0.641299 2_3:-38227617 Msa0290590:CDS
CAACTTATCTTCCTCTACAA+GGG 0.642305 2_3:+38225001 None:intergenic
AGAAGAAAGATGTGGACGTG+AGG 0.642909 2_3:+38227939 None:intergenic
GTTGACATCCTTCTTCTCGG+TGG 0.644584 2_3:-38225074 Msa0290590:CDS
TGAATGAATGAATGTAGAGG+GGG 0.644990 2_3:+38227911 None:intergenic
GGCTTGATACTGCCCCAACA+AGG 0.645353 2_3:+38225177 None:intergenic
GAATGAGGAGAGTTGGACGC+GGG 0.646249 2_3:+38227754 None:intergenic
GAGAACACTGAAACCGAGGG+TGG 0.647006 2_3:+38223912 None:intergenic
CTGCAGCGAAGCCAAGTCGG+CGG 0.647239 2_3:+38227714 None:intergenic
CCAATGAGTTCGGAGAGCCT+GGG 0.647952 2_3:+38226113 None:intergenic
TTGGTGGCTTCCCTTCCAGA+CGG 0.648069 2_3:-38225932 Msa0290590:CDS
TGGCCGACCTAAGTGGAAAG+GGG 0.648721 2_3:-38224133 Msa0290590:CDS
GGAATGAGGAGAGTTGGACG+CGG 0.650895 2_3:+38227753 None:intergenic
AGGGCCCATGCATCAACAGA+GGG 0.656285 2_3:-38225785 Msa0290590:CDS
GGCCGACCTAAGTGGAAAGG+GGG 0.657571 2_3:-38224132 Msa0290590:CDS
TAATAGTTGGAATAGCAGCA+CGG 0.665962 2_3:+38227492 None:intergenic
AGAACACTGAAACCGAGGGT+GGG 0.674665 2_3:+38223913 None:intergenic
AACTGAATGAATGAATGTAG+AGG 0.674742 2_3:+38227908 None:intergenic
GTCGATGGCGAAGAAAAGTG+TGG 0.682008 2_3:-38227618 Msa0290590:CDS
CGACTGGTGTAGCTTCATCG+AGG 0.684327 2_3:+38223970 None:intergenic
CAGGGCCCATGCATCAACAG+AGG 0.685126 2_3:-38225786 Msa0290590:CDS
TGTGAGAACACTGAAACCGA+GGG 0.688071 2_3:+38223909 None:intergenic
ATGAGCCACATATCCACCGG+TGG 0.700239 2_3:-38224044 Msa0290590:CDS
AAAAGTGTGGGAGATTTGAG+TGG 0.703173 2_3:-38227605 Msa0290590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTAATTCAAAA+TGG - chr2_3:38224189-38224208 Msa0290590:intron 10.0%
!! AATTCAATTTAAGAAAATTA+AGG - chr2_3:38224427-38224446 Msa0290590:intron 10.0%
!!! ATATTTTTTCTTTAAAATAC+AGG + chr2_3:38225307-38225326 None:intergenic 10.0%
!! AAATGATAATTAATTAATTG+AGG + chr2_3:38226342-38226361 None:intergenic 10.0%
!! TGAATTAGATATTTAATAGT+TGG + chr2_3:38224186-38224205 None:intergenic 15.0%
!!! GTTGTTAATTTGTTTATTAA+CGG - chr2_3:38224502-38224521 Msa0290590:intron 15.0%
!!! TATTTTTCCTTATATGTTAA+TGG - chr2_3:38224665-38224684 Msa0290590:CDS 15.0%
!!! GTATAAAATTAGATATTTTG+AGG - chr2_3:38224719-38224738 Msa0290590:CDS 15.0%
!!! ATTCTTACTAATAAAGTATT+TGG - chr2_3:38224922-38224941 Msa0290590:CDS 15.0%
!!! TTCTTACTAATAAAGTATTT+GGG - chr2_3:38224923-38224942 Msa0290590:CDS 15.0%
!! TTTATTAGATGAAAGTAAAT+GGG + chr2_3:38226149-38226168 None:intergenic 15.0%
!! GATAAATGTAAAAAAACTTA+TGG + chr2_3:38227931-38227950 None:intergenic 15.0%
!!! GTTTTTTTACATTTATCTTT+AGG - chr2_3:38227934-38227953 Msa0290590:five_prime_UTR 15.0%
!! ACTTATTTGAACTTATTTAT+TGG - chr2_3:38227971-38227990 Msa0290590:five_prime_UTR 15.0%
!! TTCATACTTTAGTTATAATG+CGG - chr2_3:38224282-38224301 Msa0290590:intron 20.0%
!! CAAACATAACAAATCATATA+TGG + chr2_3:38224471-38224490 None:intergenic 20.0%
!!! AATTGTTTTGAATTTGAGTT+AGG - chr2_3:38224754-38224773 Msa0290590:CDS 20.0%
!!! ATTGTTTTGAATTTGAGTTA+GGG - chr2_3:38224755-38224774 Msa0290590:CDS 20.0%
!! AATTTGAAGAAAAGTAGATT+AGG - chr2_3:38224784-38224803 Msa0290590:intron 20.0%
!!! TGCATTTTATTGTAATGTTA+AGG - chr2_3:38225048-38225067 Msa0290590:CDS 20.0%
!!! GCATTTTATTGTAATGTTAA+GGG - chr2_3:38225049-38225068 Msa0290590:CDS 20.0%
!! TCATTGTCTATAATTATATC+TGG - chr2_3:38225171-38225190 Msa0290590:CDS 20.0%
!!! ATTTTTTGTTTGTGAAGTTA+AGG - chr2_3:38225245-38225264 Msa0290590:intron 20.0%
!! ATATAGGTTAATGATTATTG+AGG - chr2_3:38225587-38225606 Msa0290590:intron 20.0%
!!! TAGATAGTTTGCATAAAATT+TGG + chr2_3:38225997-38226016 None:intergenic 20.0%
!!! TATGCAAACTATCTAAAATA+AGG - chr2_3:38226002-38226021 Msa0290590:intron 20.0%
!! GTTTATTAGATGAAAGTAAA+TGG + chr2_3:38226150-38226169 None:intergenic 20.0%
!! AATTGTAAAAGAAAATAGTG+AGG + chr2_3:38226201-38226220 None:intergenic 20.0%
!! TTGAGGAAAATAATTGTAAT+AGG + chr2_3:38226325-38226344 None:intergenic 20.0%
!!! TAATTGAAAATGTTTTCAGA+AGG - chr2_3:38226370-38226389 Msa0290590:intron 20.0%
!!! TTGAATGTTTTAATAGAATC+TGG + chr2_3:38226955-38226974 None:intergenic 20.0%
!!! CAAAAGTATTGTTTTGAAAT+TGG - chr2_3:38227400-38227419 Msa0290590:intron 20.0%
!! AAAATTTACACTAACAAACT+CGG + chr2_3:38227812-38227831 None:intergenic 20.0%
!! GGAATATTTATTTGAATTGA+TGG + chr2_3:38227897-38227916 None:intergenic 20.0%
! ATATTCTGATTATCATCAAG+AGG + chr2_3:38224132-38224151 None:intergenic 25.0%
! AGAATATTACTGATGATACT+AGG - chr2_3:38224145-38224164 Msa0290590:CDS 25.0%
! CTGATTTCCATTAACATATA+AGG + chr2_3:38224675-38224694 None:intergenic 25.0%
! ATAGAAGTTGAATAAGATGA+TGG - chr2_3:38224848-38224867 Msa0290590:intron 25.0%
!!! CTTATTTTTTTATGCCTTGA+TGG + chr2_3:38224885-38224904 None:intergenic 25.0%
!!! ATTTGGGTTTTAATTTGAAC+TGG - chr2_3:38224939-38224958 Msa0290590:CDS 25.0%
! GATGATTGAAAAGTTATAGT+AGG - chr2_3:38225012-38225031 Msa0290590:CDS 25.0%
! AGCATTTAGATAATGAAACA+TGG + chr2_3:38225097-38225116 None:intergenic 25.0%
! ATTATCTAAATGCTTTGCTT+TGG - chr2_3:38225103-38225122 Msa0290590:CDS 25.0%
! ATCTTTATAACAATGCATGT+TGG - chr2_3:38225135-38225154 Msa0290590:CDS 25.0%
! TGAAAATGTAATTACAGAGT+GGG + chr2_3:38225336-38225355 None:intergenic 25.0%
! TTAAATTTGTATAAACGCTG+TGG - chr2_3:38225431-38225450 Msa0290590:intron 25.0%
! GTTAATGATTATTGAGGAAT+GGG - chr2_3:38225593-38225612 Msa0290590:intron 25.0%
! ATAATCCAAATGCAAGAAAA+GGG + chr2_3:38225662-38225681 None:intergenic 25.0%
! AATAATCCAAATGCAAGAAA+AGG + chr2_3:38225663-38225682 None:intergenic 25.0%
!! TTGATGTTATTTAGTAGAAG+AGG + chr2_3:38225966-38225985 None:intergenic 25.0%
! CTTCTACTAAATAACATCAA+TGG - chr2_3:38225966-38225985 Msa0290590:CDS 25.0%
!! CATGCATATTTTCATGTTTT+AGG - chr2_3:38226452-38226471 Msa0290590:intron 25.0%
!! AATGATCTTCACATTTTACA+AGG - chr2_3:38226614-38226633 Msa0290590:intron 25.0%
! TAAAACATTCAATGAAGCAT+TGG - chr2_3:38226963-38226982 Msa0290590:intron 25.0%
! ATTTAAGTATGCATCACTAT+GGG + chr2_3:38227140-38227159 None:intergenic 25.0%
! TATTTAAGTATGCATCACTA+TGG + chr2_3:38227141-38227160 None:intergenic 25.0%
! ATAGAATATGTAGCAAGTAA+TGG + chr2_3:38227447-38227466 None:intergenic 25.0%
!!! TTCTATTTTTCTACTTTGCA+CGG - chr2_3:38227461-38227480 Msa0290590:CDS 25.0%
! CTTTGCAATAGACTAAAAAA+AGG + chr2_3:38227505-38227524 None:intergenic 25.0%
! ACAACATAAACTCTTATACA+AGG + chr2_3:38227780-38227799 None:intergenic 25.0%
! AAATTTACACTAACAAACTC+GGG + chr2_3:38227811-38227830 None:intergenic 25.0%
ACTGAATGAATGAATGTAGA+GGG + chr2_3:38223756-38223775 None:intergenic 30.0%
AACTGAATGAATGAATGTAG+AGG + chr2_3:38223757-38223776 None:intergenic 30.0%
! AGTCATTCTTTCTAGTCATT+TGG - chr2_3:38224218-38224237 Msa0290590:intron 30.0%
!! GTTTAATTTGTATGCACTGA+CGG - chr2_3:38224342-38224361 Msa0290590:intron 30.0%
TTATACAAAGACATCCAATG+AGG + chr2_3:38224384-38224403 None:intergenic 30.0%
!! TTTTGAATTTGAGTTAGGGA+CGG - chr2_3:38224759-38224778 Msa0290590:CDS 30.0%
TTTGAACTGGAAGTAAGTAA+AGG - chr2_3:38224952-38224971 Msa0290590:CDS 30.0%
TTATAACAATGCATGTTGGA+TGG - chr2_3:38225139-38225158 Msa0290590:CDS 30.0%
GTGAAAATGTAATTACAGAG+TGG + chr2_3:38225337-38225356 None:intergenic 30.0%
! ATTTATATCAAGAGTACGCA+TGG + chr2_3:38225381-38225400 None:intergenic 30.0%
! TGACTTTTGATGAAATTTGC+AGG - chr2_3:38225479-38225498 Msa0290590:intron 30.0%
! GACTTTTGATGAAATTTGCA+GGG - chr2_3:38225480-38225499 Msa0290590:intron 30.0%
GGTTAATGATTATTGAGGAA+TGG - chr2_3:38225592-38225611 Msa0290590:intron 30.0%
GGATTATTGACAGGTTATTA+AGG - chr2_3:38225675-38225694 Msa0290590:intron 30.0%
TTCTACTTCTTGAAAATGTG+AGG - chr2_3:38225758-38225777 Msa0290590:CDS 30.0%
! TGAAAATGTGAGGTTTTACA+AGG - chr2_3:38225768-38225787 Msa0290590:CDS 30.0%
TCAAATGTGAATCATTCTCT+GGG - chr2_3:38226111-38226130 Msa0290590:CDS 30.0%
! AAGACAAATGAAACACGTTT+TGG + chr2_3:38226264-38226283 None:intergenic 30.0%
TAATTGTAATAGGCTGAAGA+CGG + chr2_3:38226315-38226334 None:intergenic 30.0%
! ATGTTTTCAGAAGGTAAACA+AGG - chr2_3:38226379-38226398 Msa0290590:intron 30.0%
! AAGCTACTTTAGATTAGCAA+CGG - chr2_3:38226802-38226821 Msa0290590:intron 30.0%
TTTAAGTATGCATCACTATG+GGG + chr2_3:38227139-38227158 None:intergenic 30.0%
GTGATGCATACTTAAATATG+TGG - chr2_3:38227143-38227162 Msa0290590:intron 30.0%
AAAGGTAGAGAATGTAAAAC+CGG + chr2_3:38227487-38227506 None:intergenic 30.0%
TTAGTCTATTGCAAAGAAGT+TGG - chr2_3:38227509-38227528 Msa0290590:CDS 30.0%
GGGAATATAGAAGAAAGATG+TGG + chr2_3:38223734-38223753 None:intergenic 35.0%
TGAATGAATGAATGTAGAGG+GGG + chr2_3:38223754-38223773 None:intergenic 35.0%
CTGAATGAATGAATGTAGAG+GGG + chr2_3:38223755-38223774 None:intergenic 35.0%
CACTTTCTTTCCCTTCAATT+CGG + chr2_3:38224085-38224104 None:intergenic 35.0%
TAATAGTTGGAATAGCAGCA+CGG + chr2_3:38224173-38224192 None:intergenic 35.0%
AAGTGAGTTGTTTGCTTTAG+AGG - chr2_3:38224550-38224569 Msa0290590:intron 35.0%
GAATCTGAGTAACTAATGCA+TGG - chr2_3:38224577-38224596 Msa0290590:intron 35.0%
ACTTCAAACTTTACCCTCTA+AGG + chr2_3:38224982-38225001 None:intergenic 35.0%
ATCTAAATGCTTTGCTTTGG+AGG - chr2_3:38225106-38225125 Msa0290590:CDS 35.0%
TTTGATGAAATTTGCAGGGA+AGG - chr2_3:38225484-38225503 Msa0290590:intron 35.0%
GAATTGAGGTGCGTTTATAT+AGG - chr2_3:38225571-38225590 Msa0290590:intron 35.0%
CTTGCATTTGGATTATTGAC+AGG - chr2_3:38225666-38225685 Msa0290590:intron 35.0%
! AAATGTGAGGTTTTACAAGG+AGG - chr2_3:38225771-38225790 Msa0290590:CDS 35.0%
CTGTATGTGAATGATGCATT+CGG - chr2_3:38225844-38225863 Msa0290590:CDS 35.0%
AAAAGAAAACCAGCAACAGA+TGG + chr2_3:38225922-38225941 None:intergenic 35.0%
!!! TGCTGGTTTTCTTTTGCAAA+AGG - chr2_3:38225927-38225946 Msa0290590:CDS 35.0%
! GGTTTTCTTTTGCAAAAGGT+TGG - chr2_3:38225931-38225950 Msa0290590:CDS 35.0%
GCAGTAAAAACAGAAAGTAG+CGG + chr2_3:38226044-38226063 None:intergenic 35.0%
GTCAAATGTGAATCATTCTC+TGG - chr2_3:38226110-38226129 Msa0290590:CDS 35.0%
CAAATGTGAATCATTCTCTG+GGG - chr2_3:38226112-38226131 Msa0290590:CDS 35.0%
! TCCAAGGTCTCATCTAAAAT+TGG - chr2_3:38226540-38226559 Msa0290590:intron 35.0%
! TCCAATTTTAGATGAGACCT+TGG + chr2_3:38226544-38226563 None:intergenic 35.0%
AAAGTTGACATCCTTCTTCT+CGG - chr2_3:38226585-38226604 Msa0290590:intron 35.0%
! TTCACATTTTACAAGGCACA+AGG - chr2_3:38226621-38226640 Msa0290590:intron 35.0%
CAACTTATCTTCCTCTACAA+GGG + chr2_3:38226664-38226683 None:intergenic 35.0%
AACACTAATTGCAAAAGCCA+AGG - chr2_3:38226695-38226714 Msa0290590:intron 35.0%
AAGTAGCTTAGAAACAAACC+TGG + chr2_3:38226791-38226810 None:intergenic 35.0%
TCCATTCCATATGATGGTTT+GGG + chr2_3:38226995-38227014 None:intergenic 35.0%
ATCATATGGAATGGACCAAT+GGG - chr2_3:38227000-38227019 Msa0290590:intron 35.0%
GAACCAAACTCTATATGTGA+GGG + chr2_3:38227074-38227093 None:intergenic 35.0%
TGAACCAAACTCTATATGTG+AGG + chr2_3:38227075-38227094 None:intergenic 35.0%
! GTGTCTTCAATCAAAAGTGT+CGG + chr2_3:38227185-38227204 None:intergenic 35.0%
!! TAGGAGTTGGTGTTACTAAA+AGG - chr2_3:38227336-38227355 Msa0290590:intron 35.0%
!! AGGAGTTGGTGTTACTAAAA+GGG - chr2_3:38227337-38227356 Msa0290590:intron 35.0%
AAGCTGAAAATTGCCTTACA+CGG + chr2_3:38227718-38227737 None:intergenic 35.0%
!!! TGTAATTTTTTTCCCACCCT+CGG - chr2_3:38227737-38227756 Msa0290590:CDS 35.0%
TTGCTTGTAACTGTAAACCT+AGG - chr2_3:38227864-38227883 Msa0290590:five_prime_UTR 35.0%
TGTCTCTTATCGTTGAGATG+AGG + chr2_3:38223662-38223681 None:intergenic 40.0%
GGAACAAAGGAAGAACGATT+GGG + chr2_3:38223705-38223724 None:intergenic 40.0%
AGGAACAAAGGAAGAACGAT+TGG + chr2_3:38223706-38223725 None:intergenic 40.0%
! AAAAGTGTGGGAGATTTGAG+TGG - chr2_3:38224057-38224076 Msa0290590:CDS 40.0%
! TTTGATTCGAGTGTCCTCAT+TGG - chr2_3:38224367-38224386 Msa0290590:intron 40.0%
! TGGAGATGAAGTATCCATCA+AGG - chr2_3:38224868-38224887 Msa0290590:intron 40.0%
! TAAGTAAAGGTGCACCTTAG+AGG - chr2_3:38224965-38224984 Msa0290590:CDS 40.0%
! AAGTAAAGGTGCACCTTAGA+GGG - chr2_3:38224966-38224985 Msa0290590:CDS 40.0%
!! TAAATGCTTTGCTTTGGAGG+AGG - chr2_3:38225109-38225128 Msa0290590:CDS 40.0%
CACCTCAATTCCAATGAGTT+CGG + chr2_3:38225562-38225581 None:intergenic 40.0%
!! AGGAATGGGTTGAAACATGA+TGG - chr2_3:38225607-38225626 Msa0290590:intron 40.0%
! TGTTGCCCTTTTCTTGCATT+TGG - chr2_3:38225654-38225673 Msa0290590:intron 40.0%
ATTAAGGCCGAAGACAGTAT+TGG - chr2_3:38225691-38225710 Msa0290590:intron 40.0%
TTCTGGACCAATACTGTCTT+CGG + chr2_3:38225701-38225720 None:intergenic 40.0%
TGGTCCAGAAGTAGAAAAGT+TGG - chr2_3:38225711-38225730 Msa0290590:intron 40.0%
TCCAGAAGTAGAAAAGTTGG+TGG - chr2_3:38225714-38225733 Msa0290590:intron 40.0%
!!! GCAAGCTTTTTTGCATGTTC+AGG + chr2_3:38225811-38225830 None:intergenic 40.0%
! TATTTGAAGCCATCTGTTGC+TGG - chr2_3:38225910-38225929 Msa0290590:CDS 40.0%
! TCATTCTCTGGGGAAAACAT+AGG - chr2_3:38226122-38226141 Msa0290590:CDS 40.0%
TAGGAACTTGACTACCTTGT+TGG - chr2_3:38226471-38226490 Msa0290590:intron 40.0%
AGGAACTTGACTACCTTGTT+GGG - chr2_3:38226472-38226491 Msa0290590:intron 40.0%
CCAACTTATCTTCCTCTACA+AGG + chr2_3:38226665-38226684 None:intergenic 40.0%
CCTTGTAGAGGAAGATAAGT+TGG - chr2_3:38226662-38226681 Msa0290590:intron 40.0%
AATTGCAAAAGCCAAGGCAA+AGG - chr2_3:38226701-38226720 Msa0290590:intron 40.0%
ATTGCAAAAGCCAAGGCAAA+GGG - chr2_3:38226702-38226721 Msa0290590:intron 40.0%
ATACCACCCAAACCATCATA+TGG - chr2_3:38226986-38227005 Msa0290590:intron 40.0%
! ATTCCATATGATGGTTTGGG+TGG + chr2_3:38226992-38227011 None:intergenic 40.0%
ACCCAAACCATCATATGGAA+TGG - chr2_3:38226991-38227010 Msa0290590:intron 40.0%
GTCCATTCCATATGATGGTT+TGG + chr2_3:38226996-38227015 None:intergenic 40.0%
CATTGGTCCATTCCATATGA+TGG + chr2_3:38227001-38227020 None:intergenic 40.0%
CATCATATGGAATGGACCAA+TGG - chr2_3:38226999-38227018 Msa0290590:intron 40.0%
TCAAACTCAAACACTCCCAT+TGG + chr2_3:38227018-38227037 None:intergenic 40.0%
!! GAGTTTGACAAGTTTGCTGT+TGG - chr2_3:38227030-38227049 Msa0290590:intron 40.0%
GAACCCTCACATATAGAGTT+TGG - chr2_3:38227068-38227087 Msa0290590:intron 40.0%
CATGTGTTTATGTCAGACAC+CGG + chr2_3:38227223-38227242 None:intergenic 40.0%
! ATTTTTCTACTTTGCACGGC+CGG - chr2_3:38227465-38227484 Msa0290590:CDS 40.0%
AAGGGGGTGACAACTATTAT+TGG - chr2_3:38227546-38227565 Msa0290590:CDS 40.0%
GTGACAACTATTATTGGAGG+AGG - chr2_3:38227552-38227571 Msa0290590:CDS 40.0%
TTACACTAACAAACTCGGGA+GGG + chr2_3:38227807-38227826 None:intergenic 40.0%
TTTACACTAACAAACTCGGG+AGG + chr2_3:38227808-38227827 None:intergenic 40.0%
AAACTTATGGCAGCAACTGA+TGG + chr2_3:38227918-38227937 None:intergenic 40.0%
AGAACGATTGGGTGTGGTTT+GGG + chr2_3:38223694-38223713 None:intergenic 45.0%
AAGAACGATTGGGTGTGGTT+TGG + chr2_3:38223695-38223714 None:intergenic 45.0%
AAAGGAAGAACGATTGGGTG+TGG + chr2_3:38223700-38223719 None:intergenic 45.0%
AGAAGAAAGATGTGGACGTG+AGG + chr2_3:38223726-38223745 None:intergenic 45.0%
CACACACTCTCTCTCTACAA+TGG - chr2_3:38223807-38223826 Msa0290590:three_prime_UTR 45.0%
! TCGATGGCGAAGAAAAGTGT+GGG - chr2_3:38224045-38224064 Msa0290590:CDS 45.0%
! TTTGAGTGGTGCCGAATTGA+AGG - chr2_3:38224071-38224090 Msa0290590:CDS 45.0%
! TTGAGTGGTGCCGAATTGAA+GGG - chr2_3:38224072-38224091 Msa0290590:CDS 45.0%
!! TCAGATTCAGAGGTGTTGAG+AGG - chr2_3:38224616-38224635 Msa0290590:intron 45.0%
AAATTTGCAGGGAAGGCCAA+AGG - chr2_3:38225491-38225510 Msa0290590:intron 45.0%
AATTTGCAGGGAAGGCCAAA+GGG - chr2_3:38225492-38225511 Msa0290590:intron 45.0%
TATTTGGGAGTGACACCCTT+TGG + chr2_3:38225510-38225529 None:intergenic 45.0%
TGTCACTCCCAAATACAGCT+TGG - chr2_3:38225515-38225534 Msa0290590:intron 45.0%
!! AGAGGTGCCAAGCTGTATTT+GGG + chr2_3:38225525-38225544 None:intergenic 45.0%
!! AAGAGGTGCCAAGCTGTATT+TGG + chr2_3:38225526-38225545 None:intergenic 45.0%
CTCCGAACTCATTGGAATTG+AGG - chr2_3:38225557-38225576 Msa0290590:intron 45.0%
! GCCACCAACTTTTCTACTTC+TGG + chr2_3:38225718-38225737 None:intergenic 45.0%
GGAACTTGACTACCTTGTTG+GGG - chr2_3:38226473-38226492 Msa0290590:intron 45.0%
AAGCCCAAAAAGGCCATTTG+CGG - chr2_3:38226503-38226522 Msa0290590:intron 45.0%
! TTGCCGCAAATGGCCTTTTT+GGG + chr2_3:38226509-38226528 None:intergenic 45.0%
! ATTGCCGCAAATGGCCTTTT+TGG + chr2_3:38226510-38226529 None:intergenic 45.0%
! AGTTGGTTCATCCCTTGTAG+AGG - chr2_3:38226650-38226669 Msa0290590:intron 45.0%
ATGCTGGCACAGTCTGAAAA+GGG + chr2_3:38226894-38226913 None:intergenic 45.0%
!! CAAGTTTGCTGTTGGAACAG+AGG - chr2_3:38227038-38227057 Msa0290590:intron 45.0%
AAGTATGCATCACTATGGGG+TGG + chr2_3:38227136-38227155 None:intergenic 45.0%
GGGGTGACAACTATTATTGG+AGG - chr2_3:38227549-38227568 Msa0290590:CDS 45.0%
GGATATGTGGCTCATGACAT+CGG + chr2_3:38227613-38227632 None:intergenic 45.0%
! TGGTGCAAGTTTGGAGCTAT+TGG - chr2_3:38227641-38227660 Msa0290590:CDS 45.0%
! GCAAGTTTGGAGCTATTGGA+AGG - chr2_3:38227645-38227664 Msa0290590:CDS 45.0%
TGTGAGAACACTGAAACCGA+GGG + chr2_3:38227756-38227775 None:intergenic 45.0%
TTGTGAGAACACTGAAACCG+AGG + chr2_3:38227757-38227776 None:intergenic 45.0%
! GAATTGATGGCTTTCAGCCT+AGG + chr2_3:38227884-38227903 None:intergenic 45.0%
!! TGGGTGTGGTTTGGGGATTT+TGG + chr2_3:38223686-38223705 None:intergenic 50.0%
GAACGATTGGGTGTGGTTTG+GGG + chr2_3:38223693-38223712 None:intergenic 50.0%
GATGTGGACGTGAGGAACAA+AGG + chr2_3:38223718-38223737 None:intergenic 50.0%
! AAGAGGATTTAGTGGTGGGG+AGG + chr2_3:38223864-38223883 None:intergenic 50.0%
GGGAAGAGGATTTAGTGGTG+GGG + chr2_3:38223867-38223886 None:intergenic 50.0%
GGGGAAGAGGATTTAGTGGT+GGG + chr2_3:38223868-38223887 None:intergenic 50.0%
TGGGGAAGAGGATTTAGTGG+TGG + chr2_3:38223869-38223888 None:intergenic 50.0%
GGATGGGGAAGAGGATTTAG+TGG + chr2_3:38223872-38223891 None:intergenic 50.0%
GTCCAACTCTCCTCATTCCT+CGG - chr2_3:38223913-38223932 Msa0290590:three_prime_UTR 50.0%
TCGAAGGTGAGGACAGTAAG+CGG - chr2_3:38224000-38224019 Msa0290590:CDS 50.0%
! AGTAAGAGGAGTGGTGTCGA+TGG - chr2_3:38224029-38224048 Msa0290590:CDS 50.0%
GTCGATGGCGAAGAAAAGTG+TGG - chr2_3:38224044-38224063 Msa0290590:CDS 50.0%
CGCGAGTTACTCAGATTCAG+AGG - chr2_3:38224606-38224625 Msa0290590:intron 50.0%
TAGAACTCCTCCGTCTGGAA+GGG + chr2_3:38225743-38225762 None:intergenic 50.0%
AGAAGTAGAACTCCTCCGTC+TGG + chr2_3:38225748-38225767 None:intergenic 50.0%
CACATACAGATCTGCGAGTG+CGG + chr2_3:38225833-38225852 None:intergenic 50.0%
ATGCATTCGGTACTGCTCAC+AGG - chr2_3:38225857-38225876 Msa0290590:CDS 50.0%
TGCATTCGGTACTGCTCACA+GGG - chr2_3:38225858-38225877 Msa0290590:CDS 50.0%
GACTCCCTCTGTTGATGCAT+GGG + chr2_3:38225884-38225903 None:intergenic 50.0%
TGACTCCCTCTGTTGATGCA+TGG + chr2_3:38225885-38225904 None:intergenic 50.0%
GCTGAAGACGGAAGACAAGT+TGG + chr2_3:38226303-38226322 None:intergenic 50.0%
GGGCAGTATCAAGCCCAAAA+AGG - chr2_3:38226493-38226512 Msa0290590:intron 50.0%
AAGGCCATTTGCGGCAATTG+TGG - chr2_3:38226512-38226531 Msa0290590:intron 50.0%
AGGCCATTTGCGGCAATTGT+GGG - chr2_3:38226513-38226532 Msa0290590:intron 50.0%
GTTGACATCCTTCTTCTCGG+TGG - chr2_3:38226588-38226607 Msa0290590:intron 50.0%
TCATTCCTCCACCGAGAAGA+AGG + chr2_3:38226599-38226618 None:intergenic 50.0%
AAGGCACAAGGTCTTGCAGT+TGG - chr2_3:38226633-38226652 Msa0290590:intron 50.0%
ACTCTTGCTGCCAAGTGATG+TGG - chr2_3:38226731-38226750 Msa0290590:intron 50.0%
TCTGCGATCACCACATCACT+TGG + chr2_3:38226744-38226763 None:intergenic 50.0%
CAAACCTGGCTGTTTGCATC+AGG + chr2_3:38226777-38226796 None:intergenic 50.0%
GATGCTGGCACAGTCTGAAA+AGG + chr2_3:38226895-38226914 None:intergenic 50.0%
CATCTGCTATCCCTGATGGT+TGG - chr2_3:38226911-38226930 Msa0290590:intron 50.0%
TGCTATCCCTGATGGTTGGA+TGG - chr2_3:38226915-38226934 Msa0290590:intron 50.0%
GCTATCCCTGATGGTTGGAT+GGG - chr2_3:38226916-38226935 Msa0290590:intron 50.0%
CCAATCCCATCCAACCATCA+GGG + chr2_3:38226924-38226943 None:intergenic 50.0%
TCCAATCCCATCCAACCATC+AGG + chr2_3:38226925-38226944 None:intergenic 50.0%
GGTTGGATGGGATTGGACAT+TGG - chr2_3:38226928-38226947 Msa0290590:intron 50.0%
GATTGAAGACACGTGACGTC+CGG - chr2_3:38227193-38227212 Msa0290590:intron 50.0%
GGTGACACAGACACGAACAT+CGG + chr2_3:38227305-38227324 None:intergenic 50.0%
CCAACTCCTACTCGATGAAG+CGG + chr2_3:38227326-38227345 None:intergenic 50.0%
AAGAAGTTGGCCGACCTAAG+TGG - chr2_3:38227522-38227541 Msa0290590:CDS 50.0%
TTGGCCGACCTAAGTGGAAA+GGG - chr2_3:38227528-38227547 Msa0290590:CDS 50.0%
TTGTCACCCCCTTTCCACTT+AGG + chr2_3:38227539-38227558 None:intergenic 50.0%
AGGAGATTCTGTTGCAGCTG+TGG - chr2_3:38227572-38227591 Msa0290590:CDS 50.0%
GTTGCAGCTGTGGAGAAAGT+AGG - chr2_3:38227582-38227601 Msa0290590:CDS 50.0%
GTCATGAGCCACATATCCAC+CGG - chr2_3:38227615-38227634 Msa0290590:CDS 50.0%
TTGGAAGGCAAAGAGCTTCC+CGG - chr2_3:38227660-38227679 Msa0290590:CDS 50.0%
GACTGGTGTAGCTTCATCGA+GGG + chr2_3:38227694-38227713 None:intergenic 50.0%
AAATTGCCTTACACGGCGAC+TGG + chr2_3:38227711-38227730 None:intergenic 50.0%
AGAACACTGAAACCGAGGGT+GGG + chr2_3:38227752-38227771 None:intergenic 50.0%
GAGGAGTGAGATGGTTGTGG+GGG + chr2_3:38223845-38223864 None:intergenic 55.0%
GGAGGAGTGAGATGGTTGTG+GGG + chr2_3:38223846-38223865 None:intergenic 55.0%
GGGAGGAGTGAGATGGTTGT+GGG + chr2_3:38223847-38223866 None:intergenic 55.0%
GAATGAGGAGAGTTGGACGC+GGG + chr2_3:38223911-38223930 None:intergenic 55.0%
GGAATGAGGAGAGTTGGACG+CGG + chr2_3:38223912-38223931 None:intergenic 55.0%
TGCAGCTGACCCTTTGTTGG+CGG - chr2_3:38223966-38223985 Msa0290590:CDS 55.0%
CGAAGGTGAGGACAGTAAGC+GGG - chr2_3:38224001-38224020 Msa0290590:CDS 55.0%
GTAAGCGGGAGAGGAGTAAG+AGG - chr2_3:38224015-38224034 Msa0290590:CDS 55.0%
CCAATGAGTTCGGAGAGCCT+GGG + chr2_3:38225552-38225571 None:intergenic 55.0%
TCCAATGAGTTCGGAGAGCC+TGG + chr2_3:38225553-38225572 None:intergenic 55.0%
! TTGGTGGCTTCCCTTCCAGA+CGG - chr2_3:38225730-38225749 Msa0290590:intron 55.0%
GTAGAACTCCTCCGTCTGGA+AGG + chr2_3:38225744-38225763 None:intergenic 55.0%
AGGGCCCATGCATCAACAGA+GGG - chr2_3:38225877-38225896 Msa0290590:CDS 55.0%
GGCTTGATACTGCCCCAACA+AGG + chr2_3:38226488-38226507 None:intergenic 55.0%
CCACCCACAATTGCCGCAAA+TGG + chr2_3:38226519-38226538 None:intergenic 55.0%
CCATTTGCGGCAATTGTGGG+TGG - chr2_3:38226516-38226535 Msa0290590:intron 55.0%
GGCAATTGTGGGTGGTTCCA+AGG - chr2_3:38226524-38226543 Msa0290590:intron 55.0%
GACATCCTTCTTCTCGGTGG+AGG - chr2_3:38226591-38226610 Msa0290590:intron 55.0%
GAGTGACACACCCTTTGCCT+TGG + chr2_3:38226715-38226734 None:intergenic 55.0%
TGCTCCTGATGCAAACAGCC+AGG - chr2_3:38226770-38226789 Msa0290590:intron 55.0%
CCATCAGGGATAGCAGATGC+TGG + chr2_3:38226910-38226929 None:intergenic 55.0%
CCAGCATCTGCTATCCCTGA+TGG - chr2_3:38226907-38226926 Msa0290590:intron 55.0%
CCCTGATGGTTGGATGGGAT+TGG - chr2_3:38226921-38226940 Msa0290590:intron 55.0%
TATGTCAGACACCGGACGTC+CGG + chr2_3:38227215-38227234 None:intergenic 55.0%
GTGTCACCGCTTCATCGAGT+AGG - chr2_3:38227317-38227336 Msa0290590:intron 55.0%
CCGCTTCATCGAGTAGGAGT+TGG - chr2_3:38227323-38227342 Msa0290590:intron 55.0%
GTTGGCCGACCTAAGTGGAA+AGG - chr2_3:38227527-38227546 Msa0290590:CDS 55.0%
TGGCCGACCTAAGTGGAAAG+GGG - chr2_3:38227529-38227548 Msa0290590:CDS 55.0%
CACCCCCTTTCCACTTAGGT+CGG + chr2_3:38227535-38227554 None:intergenic 55.0%
ATGAGCCACATATCCACCGG+TGG - chr2_3:38227618-38227637 Msa0290590:CDS 55.0%
CTCCAAACTTGCACCACCAC+CGG + chr2_3:38227637-38227656 None:intergenic 55.0%
TTCATCGAGGGCGAGAACAC+CGG + chr2_3:38227682-38227701 None:intergenic 55.0%
CGACTGGTGTAGCTTCATCG+AGG + chr2_3:38227695-38227714 None:intergenic 55.0%
GAGAACACTGAAACCGAGGG+TGG + chr2_3:38227753-38227772 None:intergenic 55.0%
GGGGAGGAGTGAGATGGTTG+TGG + chr2_3:38223848-38223867 None:intergenic 60.0%
! AGTGGTGGGGAGGAGTGAGA+TGG + chr2_3:38223854-38223873 None:intergenic 60.0%
CGCCGAGGAATGAGGAGAGT+TGG + chr2_3:38223918-38223937 None:intergenic 60.0%
CAGCTGCAGCGAAGCCAAGT+CGG + chr2_3:38223954-38223973 None:intergenic 60.0%
CGCTGCAGCTGACCCTTTGT+TGG - chr2_3:38223963-38223982 Msa0290590:CDS 60.0%
TGACCCTTTGTTGGCGGTGC+AGG - chr2_3:38223972-38223991 Msa0290590:CDS 60.0%
CCACCTGCACCGCCAACAAA+GGG + chr2_3:38223978-38223997 None:intergenic 60.0%
GTGAGGACAGTAAGCGGGAG+AGG - chr2_3:38224006-38224025 Msa0290590:CDS 60.0%
CGGGAGAGGAGTAAGAGGAG+TGG - chr2_3:38224020-38224039 Msa0290590:CDS 60.0%
GCTTGGCACCTCTTGTTCCC+AGG - chr2_3:38225532-38225551 Msa0290590:intron 60.0%
TCGGAGAGCCTGGGAACAAG+AGG + chr2_3:38225543-38225562 None:intergenic 60.0%
CCCAGGCTCTCCGAACTCAT+TGG - chr2_3:38225549-38225568 Msa0290590:intron 60.0%
CAGGGCCCATGCATCAACAG+AGG - chr2_3:38225876-38225895 Msa0290590:CDS 60.0%
GGCCGACCTAAGTGGAAAGG+GGG - chr2_3:38227530-38227549 Msa0290590:CDS 60.0%
AGCCACATATCCACCGGTGG+TGG - chr2_3:38227621-38227640 Msa0290590:CDS 60.0%
CACCACCACCGGTGGATATG+TGG + chr2_3:38227626-38227645 None:intergenic 60.0%
CAAACTTGCACCACCACCGG+TGG + chr2_3:38227634-38227653 None:intergenic 60.0%
! CACCGGTGGTGGTGCAAGTT+TGG - chr2_3:38227632-38227651 Msa0290590:CDS 60.0%
TCATCGAGGGCGAGAACACC+GGG + chr2_3:38227681-38227700 None:intergenic 60.0%
GCTACACCAGTCGCCGTGTA+AGG - chr2_3:38227702-38227721 Msa0290590:CDS 60.0%
!! TGGGGTGGTGGATGGGGAAG+AGG + chr2_3:38223881-38223900 None:intergenic 65.0%
!! AGGGGGATGGGGTGGTGGAT+GGG + chr2_3:38223888-38223907 None:intergenic 65.0%
AGGAGAGTTGGACGCGGGAG+GGG + chr2_3:38223906-38223925 None:intergenic 65.0%
GAGGAGAGTTGGACGCGGGA+GGG + chr2_3:38223907-38223926 None:intergenic 65.0%
TGAGGAGAGTTGGACGCGGG+AGG + chr2_3:38223908-38223927 None:intergenic 65.0%
CGAAGCCAAGTCGGCGGAGT+GGG + chr2_3:38223945-38223964 None:intergenic 65.0%
CTGCAGCGAAGCCAAGTCGG+CGG + chr2_3:38223951-38223970 None:intergenic 65.0%
CCCTTTGTTGGCGGTGCAGG+TGG - chr2_3:38223975-38223994 Msa0290590:CDS 65.0%
GCCACCTGCACCGCCAACAA+AGG + chr2_3:38223979-38223998 None:intergenic 65.0%
! TGCAGGTGGCGTCGAAGGTG+AGG - chr2_3:38223989-38224008 Msa0290590:CDS 65.0%
GTGGCTTCCCTTCCAGACGG+AGG - chr2_3:38225733-38225752 Msa0290590:intron 65.0%
ACACGTGACGTCCGGACGTC+CGG - chr2_3:38227201-38227220 Msa0290590:intron 65.0%
!! GGGGGATGGGGTGGTGGATG+GGG + chr2_3:38223887-38223906 None:intergenic 70.0%
!! GAGGGGGATGGGGTGGTGGA+TGG + chr2_3:38223889-38223908 None:intergenic 70.0%
TTGGACGCGGGAGGGGGATG+GGG + chr2_3:38223899-38223918 None:intergenic 70.0%
GTTGGACGCGGGAGGGGGAT+GGG + chr2_3:38223900-38223919 None:intergenic 70.0%
AGTTGGACGCGGGAGGGGGA+TGG + chr2_3:38223901-38223920 None:intergenic 70.0%
GGAGAGTTGGACGCGGGAGG+GGG + chr2_3:38223905-38223924 None:intergenic 70.0%
AGCCAAGTCGGCGGAGTGGG+CGG + chr2_3:38223942-38223961 None:intergenic 70.0%
GCGAAGCCAAGTCGGCGGAG+TGG + chr2_3:38223946-38223965 None:intergenic 70.0%
!! TGGGCGGGCGCCGAGGAATG+AGG + chr2_3:38223926-38223945 None:intergenic 75.0%
GCCAAGTCGGCGGAGTGGGC+GGG + chr2_3:38223941-38223960 None:intergenic 75.0%
! GGCGGTGCAGGTGGCGTCGA+AGG - chr2_3:38223984-38224003 Msa0290590:CDS 75.0%
! GCGGGAGGGGGATGGGGTGG+TGG + chr2_3:38223893-38223912 None:intergenic 80.0%
! GACGCGGGAGGGGGATGGGG+TGG + chr2_3:38223896-38223915 None:intergenic 80.0%
!! GCCCGCCCACTCCGCCGACT+TGG - chr2_3:38223937-38223956 Msa0290590:three_prime_UTR 80.0%
!! GGCGGAGTGGGCGGGCGCCG+AGG + chr2_3:38223933-38223952 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 38223639 38228045 38223639 ID=Msa0290590;Name=Msa0290590
chr2_3 mRNA 38223639 38228045 38223639 ID=Msa0290590-mRNA-1;Parent=Msa0290590;Name=Msa0290590-mRNA-1;_AED=0.34;_eAED=0.34;_QI=187|1|1|1|1|1|6|323|479
chr2_3 exon 38223639 38224171 38223639 ID=Msa0290590-mRNA-1:exon:12442;Parent=Msa0290590-mRNA-1
chr2_3 exon 38224625 38224783 38224625 ID=Msa0290590-mRNA-1:exon:12441;Parent=Msa0290590-mRNA-1
chr2_3 exon 38224893 38225210 38224893 ID=Msa0290590-mRNA-1:exon:12440;Parent=Msa0290590-mRNA-1
chr2_3 exon 38225736 38225996 38225736 ID=Msa0290590-mRNA-1:exon:12439;Parent=Msa0290590-mRNA-1
chr2_3 exon 38226106 38226183 38226106 ID=Msa0290590-mRNA-1:exon:12438;Parent=Msa0290590-mRNA-1
chr2_3 exon 38227445 38228045 38227445 ID=Msa0290590-mRNA-1:exon:12437;Parent=Msa0290590-mRNA-1
chr2_3 five_prime_UTR 38227859 38228045 38227859 ID=Msa0290590-mRNA-1:five_prime_utr;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38227445 38227858 38227445 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38226106 38226183 38226106 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38225736 38225996 38225736 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38224893 38225210 38224893 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38224625 38224783 38224625 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 CDS 38223962 38224171 38223962 ID=Msa0290590-mRNA-1:cds;Parent=Msa0290590-mRNA-1
chr2_3 three_prime_UTR 38223639 38223961 38223639 ID=Msa0290590-mRNA-1:three_prime_utr;Parent=Msa0290590-mRNA-1
Gene Sequence

>Msa0290590

ATGGCTTCAGCTACAGCCCCCACAACCATCTCACTCCTCCCCACCACTAAATCCTCTTCCCCATCCACCACCCCATCCCCCTCCCGCGTCCAACTCTCCTCATTCCTCGGCGCCCGCCCACTCCGCCGACTTGGCTTCGCTGCAGCTGACCCTTTGTTGGCGGTGCAGGTGGCGTCGAAGGTGAGGACAGTAAGCGGGAGAGGAGTAAGAGGAGTGGTGTCGATGGCGAAGAAAAGTGTGGGAGATTTGAGTGGTGCCGAATTGAAGGGAAAGAAAGTGTTTGTGAGAGCTGACTTGAATGTTCCTCTTGATGATAATCAGAATATTACTGATGATACTAGGATCCGTGCTGCTATTCCAACTATTAAATATCTAATTCAAAATGGTGCTAAAGTCATTCTTTCTAGTCATTTGGGAAGGCCAAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTTCCCAGGCTCTCCGAACTCATTGGAATTGAGGTTATTAAGGCCGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCCCTTCCAGACGGAGGAGTTCTACTTCTTGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAACATGCAAAAAAGCTTGCCGCACTCGCAGATCTGTATGTGAATGATGCATTCGGTACTGCTCACAGGGCCCATGCATCAACAGAGGGAGTCACTAAATATTTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGACTACCTTGTTGGGGCAGTATCAAGCCCAAAAAGGCCATTTGCGGCAATTGTGGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAATCACTTCTAGAAAAAGTTGACATCCTTCTTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTGCAGTTGGTTCATCCCTTGTAGAGGAAGATAAGTTGGATCTTGCTACAACACTAATTGCAAAAGCCAAGGCAAAGGGTGTGTCACTCTTGCTGCCAAGTGATGTGGTGATCGCAGACAAATTTGCTCCTGATGCAAACAGCCAGACTGTGCCAGCATCTGCTATCCCTGATGGTTGGATGGGATTGGACATTGGTCCAGATTCTATTAAAACATTCAATGAAGCATTGGATACCACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGAACAGAGTCTATTGCAAAGAAGTTGGCCGACCTAAGTGGAAAGGGGGTGACAACTATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCCGATGTCATGAGCCACATATCCACCGGTGGTGGTGCAAGTTTGGAGCTATTGGAAGGCAAAGAGCTTCCCGGTGTTCTCGCCCTCGATGAAGCTACACCAGTCGCCGTGTAA

Protein sequence

>Msa0290590

MASATAPTTISLLPTTKSSSPSTTPSPSRVQLSSFLGARPLRRLGFAAADPLLAVQVASKVRTVSGRGVRGVVSMAKKSVGDLSGAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIEVIKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLAALADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLAVGSSLVEEDKLDLATTLIAKAKAKGVSLLLPSDVVIADKFAPDANSQTVPASAIPDGWMGLDIGPDSIKTFNEALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV*