AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0396530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396530 MtrunA17_Chr3g0083561 94.561 478 3 1 1 455 1 478 0.0 905
Msa0396530 MtrunA17_Chr1g0156541 93.933 478 6 1 1 455 1 478 0.0 900
Msa0396530 MtrunA17_Chr8g0352721 80.213 470 67 2 7 453 1 467 0.0 760
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396530 AT3G54470.1 74.316 475 97 3 5 455 2 475 0.0 716

Find 150 sgRNAs with CRISPR-Local

Find 548 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTCCTGTTGGATTCT+TGG 0.162358 3_2:+15057997 None:intergenic
TGGAAGAGACAGAGGAAATT+AGG 0.175139 3_2:+15058518 None:intergenic
GCAAGGTGGGCGGGAAAATT+TGG 0.209823 3_2:-15058224 Msa0396530:CDS
TTCATCACTGTGGGTGTATT+TGG 0.219750 3_2:-15059304 Msa0396530:five_prime_UTR
AAAGACTTGACCTTGGTTAT+TGG 0.229339 3_2:+15058046 None:intergenic
TTGCTTAATCATTGAGGATT+TGG 0.242028 3_2:-15058338 Msa0396530:CDS
GCATTTGTTTCATCAACTTT+AGG 0.255737 3_2:+15055485 None:intergenic
GTGACTGGTGGCGATGGTTT+AGG 0.260282 3_2:-15056504 Msa0396530:CDS
AGGTCAAGTCTTTGTCATTT+GGG 0.286862 3_2:-15058036 Msa0396530:CDS
CCAAGGATGGAATGCATATT+TGG 0.288220 3_2:-15055721 Msa0396530:CDS
AAAGAAGTTATTTGAGATAA+TGG 0.294923 3_2:-15057981 Msa0396530:CDS
CCAAATATGCATTCCATCCT+TGG 0.307382 3_2:+15055721 None:intergenic
ATCTGCATTTGAAGAATAAA+AGG 0.312439 3_2:-15055683 Msa0396530:three_prime_UTR
AAGGTCAAGTCTTTGTCATT+TGG 0.313820 3_2:-15058037 Msa0396530:CDS
ATGCAGATCTCAAGCAGATT+TGG 0.330274 3_2:+15055698 None:intergenic
ATCTCCCTTGGCAAGGTTAC+CGG 0.335912 3_2:+15056762 None:intergenic
TACCAGTGGAACATCAGTTT+TGG 0.340084 3_2:-15058314 Msa0396530:CDS
TCTTTCATTCAGGCAACTCC+TGG 0.349446 3_2:-15056537 Msa0396530:intron
TGACTGGTGGCGATGGTTTA+GGG 0.363262 3_2:-15056503 Msa0396530:CDS
TTAGGGTCTGAGAGATTTGC+TGG 0.363600 3_2:+15058536 None:intergenic
CAAAGTTCTTAGATGAGAAT+AGG 0.374280 3_2:-15058099 Msa0396530:CDS
GGCAACTTCAAGCTCAAATC+TGG 0.374538 3_2:-15058616 Msa0396530:CDS
GTCTTTGTCATTTGGGGAAA+GGG 0.376781 3_2:-15058029 Msa0396530:CDS
CCTCAATGATTAAGCAACTT+TGG 0.383142 3_2:+15058344 None:intergenic
GGAAGAGACAGAGGAAATTA+GGG 0.389314 3_2:+15058519 None:intergenic
GAATATTATTTGTGAGGAAA+TGG 0.389727 3_2:-15058701 Msa0396530:exon
GGATCTTTCACATATTAGAT+TGG 0.390057 3_2:-15056998 Msa0396530:CDS
ACATAACTTCTTAATCTTTG+AGG 0.401323 3_2:-15057168 Msa0396530:CDS
ATCTCTGGAACACACTCAAA+AGG 0.402329 3_2:-15058724 Msa0396530:five_prime_UTR
GAGATATCAGCTGTCAAATT+CGG 0.409617 3_2:-15058637 Msa0396530:CDS
ATGTACCCGAGGCCTTCCTC+TGG 0.411635 3_2:+15055609 None:intergenic
TCAAATAACTTCTTTCCTGT+TGG 0.412197 3_2:+15057989 None:intergenic
TTTAGTCCATCCACGATTCC+AGG 0.414929 3_2:+15056942 None:intergenic
GATCTTTCACATATTAGATT+GGG 0.421238 3_2:-15056997 Msa0396530:CDS
AGGCTTGAAATCACCTTCAA+TGG 0.421566 3_2:+15058369 None:intergenic
TCAGGGTTTGCCTCGTGGTA+GGG 0.421932 3_2:-15056815 Msa0396530:intron
ATAAGAATATCTCACCTTCT+CGG 0.427341 3_2:+15057892 None:intergenic
AGAAGCTTAGAGCCAAAATC+AGG 0.428014 3_2:+15057431 None:intergenic
CACCTTGCTCTCTATCAATC+AGG 0.434163 3_2:+15058239 None:intergenic
ATTGAAGGTGATTTCAAGCC+TGG 0.435970 3_2:-15058367 Msa0396530:CDS
AATTATTAAATTGACTGAAA+TGG 0.437616 3_2:-15058176 Msa0396530:CDS
GACTTGATGACGAGATGGTA+GGG 0.437781 3_2:-15058129 Msa0396530:CDS
GAAGGAGAGTAATCTGTGTT+TGG 0.444097 3_2:-15057954 Msa0396530:CDS
ATCTCGAGTTTCATCACTGT+GGG 0.447991 3_2:-15059313 Msa0396530:five_prime_UTR
CCAAAATCAGGAGTAAAATC+TGG 0.451598 3_2:+15057443 None:intergenic
GCAATGGGTAAGGCAGTGTA+AGG 0.460275 3_2:+15058469 None:intergenic
TTCCAGGTCGTCCACGATAG+AGG 0.461238 3_2:-15055819 Msa0396530:intron
TTATTTCTACAACAAATCTC+TGG 0.463604 3_2:-15058739 Msa0396530:five_prime_UTR
CCAAAGTTGCTTAATCATTG+AGG 0.466579 3_2:-15058344 Msa0396530:CDS
TCCTTACGACGCATGACCAT+GGG 0.467155 3_2:+15058418 None:intergenic
GGCAACTCCTGGAGTTCAAA+TGG 0.472058 3_2:-15056526 Msa0396530:CDS
ACCTCATTTGATCTTGTATG+TGG 0.474446 3_2:-15058496 Msa0396530:CDS
GTAAATGCTCATATAATCTC+TGG 0.481895 3_2:-15056966 Msa0396530:CDS
CGTGGATGGACTAAAATTGA+AGG 0.484767 3_2:-15056934 Msa0396530:intron
TTCCAAAACTGATGTTCCAC+TGG 0.489744 3_2:+15058312 None:intergenic
TATTCATGAGCTGCCTCAGC+AGG 0.493515 3_2:+15055750 None:intergenic
CTGTGTTTGGCTGCAGATGT+TGG 0.494453 3_2:-15057941 Msa0396530:CDS
GACACATGTGGCAATGGGTA+AGG 0.497143 3_2:+15058459 None:intergenic
CGGGAAAATTTGGAGGAGAA+TGG 0.500157 3_2:-15058214 Msa0396530:CDS
AAGAGAGACACATGTGGCAA+TGG 0.500349 3_2:+15058453 None:intergenic
GGAAATGGCGTCATCATCAT+TGG 0.504394 3_2:-15058686 Msa0396530:exon
AGTCTTTGTCATTTGGGGAA+AGG 0.506387 3_2:-15058030 Msa0396530:CDS
CCAGTCACCATTTGAACTCC+AGG 0.507708 3_2:+15056519 None:intergenic
TCTCTGGAACACACTCAAAA+GGG 0.508398 3_2:-15058723 Msa0396530:five_prime_UTR
GTCTTCAGCAAGCATATCTC+AGG 0.509329 3_2:+15057482 None:intergenic
CAGGGTTTGCCTCGTGGTAG+GGG 0.510707 3_2:-15056814 Msa0396530:CDS
ACAAATGCAAGCATTGTTTG+AGG 0.511644 3_2:-15055470 Msa0396530:three_prime_UTR
GTTAGTAACTTATATTGAAG+TGG 0.513434 3_2:-15055562 Msa0396530:three_prime_UTR
ACAGTAACCATGCAATATGC+AGG 0.513518 3_2:-15057119 Msa0396530:CDS
AATCTGTCCAAGAATCCAAC+AGG 0.514570 3_2:-15058004 Msa0396530:CDS
ATGATTAAGCAACTTTGGCC+AGG 0.515619 3_2:+15058349 None:intergenic
GCTCATATAATCTCTGGTCC+TGG 0.518569 3_2:-15056960 Msa0396530:CDS
TGTAACCCAGAGGAAGGCCT+CGG 0.519321 3_2:-15055615 Msa0396530:three_prime_UTR
AGAGAGACACATGTGGCAAT+GGG 0.520298 3_2:+15058454 None:intergenic
AGCTGCACCACTACGTTCTG+TGG 0.521478 3_2:-15058287 Msa0396530:CDS
GACATTATCATCGTTGGACG+TGG 0.523138 3_2:-15055792 Msa0396530:CDS
TGATAGAGAGCAAGGTGGGC+GGG 0.523188 3_2:-15058233 Msa0396530:CDS
ATGAATACCGTGTCCAAGGA+TGG 0.523839 3_2:-15055734 Msa0396530:CDS
AGACGGAGGTCAATGTAGAT+TGG 0.523857 3_2:+15058583 None:intergenic
GGAAGTGACATTATCATCGT+TGG 0.524402 3_2:-15055798 Msa0396530:CDS
GGCACTGCTAAAGCCATTGA+AGG 0.527673 3_2:-15058382 Msa0396530:CDS
CCCCATGGTCATGCGTCGTA+AGG 0.529623 3_2:-15058419 Msa0396530:CDS
AAGGATAAGATATGATGAGA+CGG 0.530450 3_2:+15058566 None:intergenic
ATTTGAGATAATGGCTCAGA+AGG 0.531327 3_2:-15057972 Msa0396530:CDS
ATTATACTTCTGAAATCAAG+TGG 0.531448 3_2:+15055400 None:intergenic
TCTGGTCCTGGAATCGTGGA+TGG 0.532929 3_2:-15056948 Msa0396530:CDS
CTCAGGGTTTGCCTCGTGGT+AGG 0.534371 3_2:-15056816 Msa0396530:intron
TTCCTTACGACGCATGACCA+TGG 0.546727 3_2:+15058417 None:intergenic
ATTTGACAGCTGATATCTCA+TGG 0.551164 3_2:+15058641 None:intergenic
GATCGTAAATTTGCTGACAT+TGG 0.551409 3_2:-15057146 Msa0396530:CDS
CTTGCTGAAATGAGTTCAGC+CGG 0.554751 3_2:-15056781 Msa0396530:CDS
GAGATTTGCTGGAGAAGAGA+AGG 0.555102 3_2:+15058547 None:intergenic
TCACTGTGGGTGTATTTGGA+AGG 0.559712 3_2:-15059300 Msa0396530:intron
AGACTTGATGACGAGATGGT+AGG 0.561737 3_2:-15058130 Msa0396530:CDS
GAAGGTTGCAGCTGTGGCAA+AGG 0.562858 3_2:-15058077 Msa0396530:CDS
GAATAGGAAGGTTGCAGCTG+TGG 0.569252 3_2:-15058083 Msa0396530:CDS
AGCAGCAGTATAATCTCCCT+TGG 0.569550 3_2:+15056750 None:intergenic
ATTGAGGATTTGGTTACCAG+TGG 0.571630 3_2:-15058328 Msa0396530:CDS
GCTCATGAATACCGTGTCCA+AGG 0.571738 3_2:-15055738 Msa0396530:CDS
AAAAGGGAATATTATTTGTG+AGG 0.573256 3_2:-15058707 Msa0396530:five_prime_UTR
CCTGGAGTTCAAATGGTGAC+TGG 0.574925 3_2:-15056519 Msa0396530:CDS
GTAACCCAGAGGAAGGCCTC+GGG 0.575667 3_2:-15055614 Msa0396530:three_prime_UTR
CGTTGGACGTGGCATCATCA+AGG 0.576271 3_2:-15055781 Msa0396530:CDS
GCTGCACCACTACGTTCTGT+GGG 0.576410 3_2:-15058286 Msa0396530:CDS
TATGAAGCCAATTACAAAGT+CGG 0.577391 3_2:+15056702 None:intergenic
GGTCAAGTCTTTGTCATTTG+GGG 0.580836 3_2:-15058035 Msa0396530:CDS
CAAATGGTGACTGGTGGCGA+TGG 0.583195 3_2:-15056510 Msa0396530:CDS
AATCTCTGGTCCTGGAATCG+TGG 0.585986 3_2:-15056952 Msa0396530:CDS
TTCAGCCGGTAACCTTGCCA+AGG 0.587283 3_2:-15056767 Msa0396530:CDS
GTTCTTAGATGAGAATAGGA+AGG 0.589757 3_2:-15058095 Msa0396530:CDS
TGTACCCGAGGCCTTCCTCT+GGG 0.595293 3_2:+15055610 None:intergenic
TCTTGCTCAGAGCATCCCCA+TGG 0.599726 3_2:-15058434 Msa0396530:CDS
TGGAAGACTTGATGACGAGA+TGG 0.604205 3_2:-15058134 Msa0396530:CDS
ACTTGATGACGAGATGGTAG+GGG 0.608317 3_2:-15058128 Msa0396530:CDS
TAATGTCACTTCCTCTATCG+TGG 0.612294 3_2:+15055808 None:intergenic
GTCCTGATTGATAGAGAGCA+AGG 0.612462 3_2:-15058241 Msa0396530:CDS
TATCTCGAGTTTCATCACTG+TGG 0.613648 3_2:-15059314 Msa0396530:five_prime_UTR
ACTATACCCTGCATATTGCA+TGG 0.614445 3_2:+15057112 None:intergenic
ATTGCTTGAAATTGCCGAGA+AGG 0.616911 3_2:-15057906 Msa0396530:intron
CGTAAGGAAGTCAAAGACTA+CGG 0.621272 3_2:-15058403 Msa0396530:CDS
CAGTATAATCTCCCTTGGCA+AGG 0.623016 3_2:+15056755 None:intergenic
AGGTGGGCGGGAAAATTTGG+AGG 0.623527 3_2:-15058221 Msa0396530:CDS
ACCACATACAAGATCAAATG+AGG 0.625670 3_2:+15058495 None:intergenic
AAATGACAAAGACTTGACCT+TGG 0.633719 3_2:+15058039 None:intergenic
ATGCTTGCTGAAGACTCATG+TGG 0.637264 3_2:-15057474 Msa0396530:CDS
TTGATAGAGAGCAAGGTGGG+CGG 0.643970 3_2:-15058234 Msa0396530:CDS
CAAGGCAGCAAATCCTGCTG+AGG 0.645766 3_2:-15055763 Msa0396530:CDS
AAATGAGGTGGAAGAGACAG+AGG 0.646361 3_2:+15058510 None:intergenic
TGATTGATAGAGAGCAAGGT+GGG 0.648024 3_2:-15058237 Msa0396530:CDS
ACATACAAGATCAAATGAGG+TGG 0.650465 3_2:+15058498 None:intergenic
GAGGTCAATGTAGATTGGTG+AGG 0.651318 3_2:+15058588 None:intergenic
TGCTGCATTGAAAATTGCTG+AGG 0.652056 3_2:-15056731 Msa0396530:CDS
CAGTAACCATGCAATATGCA+GGG 0.653666 3_2:-15057118 Msa0396530:intron
TTTCACTGTAACCCAGAGGA+AGG 0.654967 3_2:-15055621 Msa0396530:three_prime_UTR
ATGCATTCCATCCTTGGACA+CGG 0.656504 3_2:+15055727 None:intergenic
GGTTGAGAAGCCAATAACCA+AGG 0.658377 3_2:-15058056 Msa0396530:CDS
CATACTCAGGGTTTGCCTCG+TGG 0.665328 3_2:-15056820 Msa0396530:intron
TCAGCCGGTAACCTTGCCAA+GGG 0.668243 3_2:-15056766 Msa0396530:CDS
TCAACATTATAATGTACCCG+AGG 0.672281 3_2:+15055598 None:intergenic
CAATGGGTAAGGCAGTGTAA+GGG 0.675950 3_2:+15058470 None:intergenic
CCTTACGACGCATGACCATG+GGG 0.681351 3_2:+15058419 None:intergenic
GGAGTTCAAATGGTGACTGG+TGG 0.701669 3_2:-15056516 Msa0396530:CDS
GATAAGATATGATGAGACGG+AGG 0.705591 3_2:+15058569 None:intergenic
TTCAACCCCACAGAACGTAG+TGG 0.709421 3_2:+15058280 None:intergenic
CTGCACCACTACGTTCTGTG+GGG 0.713121 3_2:-15058285 Msa0396530:CDS
AGCAATAGTCCCCTACCACG+AGG 0.719710 3_2:+15056805 None:intergenic
CTAATTTCACTGTAACCCAG+AGG 0.724449 3_2:-15055625 Msa0396530:three_prime_UTR
CTGATTGATAGAGAGCAAGG+TGG 0.725576 3_2:-15058238 Msa0396530:CDS
CTGAGCAAGAGAGACACATG+TGG 0.738423 3_2:+15058447 None:intergenic
GGGGTTGAAGATCAGTGACG+CGG 0.777219 3_2:-15058266 Msa0396530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATAAATATTATAA+TGG + chr3_2:15057850-15057869 None:intergenic 0.0%
!! TAATATAATAAATATTATAA+TGG + chr3_2:15057850-15057869 None:intergenic 0.0%
!!! TGTTTTTTTATAAAAAAGAA+AGG - chr3_2:15059309-15059328 Msa0396530:five_prime_UTR 10.0%
!!! TGTTTTTTTATAAAAAAGAA+AGG - chr3_2:15059309-15059328 Msa0396530:five_prime_UTR 10.0%
!!! TGTTTTTTAAATTTGTATTG+TGG - chr3_2:15055624-15055643 Msa0396530:three_prime_UTR 15.0%
!! TAAAGTATAATAACAAAAAG+TGG + chr3_2:15055684-15055703 None:intergenic 15.0%
!!! TTGTTATTATACTTTATGAA+TGG - chr3_2:15055688-15055707 Msa0396530:exon 15.0%
!!! TTAAAATTTTAAGCACTTAA+GGG + chr3_2:15055890-15055909 None:intergenic 15.0%
!! AATTATTAAATTGACTGAAA+TGG - chr3_2:15056563-15056582 Msa0396530:intron 15.0%
!! TTAGTTAAAAGACAAATAAT+TGG + chr3_2:15057209-15057228 None:intergenic 15.0%
!! TTATAAAAAAACAAAATGAC+AGG + chr3_2:15059302-15059321 None:intergenic 15.0%
!!! TGTTTTTTAAATTTGTATTG+TGG - chr3_2:15055624-15055643 Msa0396530:three_prime_UTR 15.0%
!! TAAAGTATAATAACAAAAAG+TGG + chr3_2:15055684-15055703 None:intergenic 15.0%
!!! TTGTTATTATACTTTATGAA+TGG - chr3_2:15055688-15055707 Msa0396530:exon 15.0%
!!! TTAAAATTTTAAGCACTTAA+GGG + chr3_2:15055890-15055909 None:intergenic 15.0%
!! AATTATTAAATTGACTGAAA+TGG - chr3_2:15056563-15056582 Msa0396530:intron 15.0%
!! TTAGTTAAAAGACAAATAAT+TGG + chr3_2:15057209-15057228 None:intergenic 15.0%
!! TTATAAAAAAACAAAATGAC+AGG + chr3_2:15059302-15059321 None:intergenic 15.0%
!!! TTAGACTTTTTCGAAATTTT+AGG - chr3_2:15055477-15055496 Msa0396530:three_prime_UTR 20.0%
!!! ATTTTAAATTGCAATTGTGT+CGG - chr3_2:15055721-15055740 Msa0396530:CDS 20.0%
!!! TAAAATTTTAAGCACTTAAG+GGG + chr3_2:15055889-15055908 None:intergenic 20.0%
!!! CTTAAAATTTTAAGCACTTA+AGG + chr3_2:15055891-15055910 None:intergenic 20.0%
!!! AAAGAAGTTATTTGAGATAA+TGG - chr3_2:15056758-15056777 Msa0396530:CDS 20.0%
!! TCACAATATTATGTACTAAA+TGG + chr3_2:15057097-15057116 None:intergenic 20.0%
!! TAAAAGACAAATAATTGGTA+TGG + chr3_2:15057204-15057223 None:intergenic 20.0%
!! GACTAATTGTCAATAATATT+AGG + chr3_2:15057385-15057404 None:intergenic 20.0%
!! AAAATAGAACAATGTCATAT+TGG + chr3_2:15057708-15057727 None:intergenic 20.0%
!!! TTCTATTTTAATATCTACAG+AGG - chr3_2:15057719-15057738 Msa0396530:intron 20.0%
!!! TCTATTTTAATATCTACAGA+GGG - chr3_2:15057720-15057739 Msa0396530:intron 20.0%
!! TACATATATATATCACCATT+AGG - chr3_2:15058522-15058541 Msa0396530:CDS 20.0%
!!! AATAGTCTTGATACTTAAAA+AGG + chr3_2:15058620-15058639 None:intergenic 20.0%
!!! CAAGACTATTTATTTTTCTT+TGG - chr3_2:15058630-15058649 Msa0396530:CDS 20.0%
!!! TTAACAAAATGTTATTTTCC+AGG - chr3_2:15058904-15058923 Msa0396530:intron 20.0%
!!! TTAGACTTTTTCGAAATTTT+AGG - chr3_2:15055477-15055496 Msa0396530:three_prime_UTR 20.0%
!!! ATTTTAAATTGCAATTGTGT+CGG - chr3_2:15055721-15055740 Msa0396530:CDS 20.0%
!!! TAAAATTTTAAGCACTTAAG+GGG + chr3_2:15055889-15055908 None:intergenic 20.0%
!!! CTTAAAATTTTAAGCACTTA+AGG + chr3_2:15055891-15055910 None:intergenic 20.0%
!!! AAAGAAGTTATTTGAGATAA+TGG - chr3_2:15056758-15056777 Msa0396530:CDS 20.0%
!! TCACAATATTATGTACTAAA+TGG + chr3_2:15057097-15057116 None:intergenic 20.0%
!! TAAAAGACAAATAATTGGTA+TGG + chr3_2:15057204-15057223 None:intergenic 20.0%
!! GACTAATTGTCAATAATATT+AGG + chr3_2:15057385-15057404 None:intergenic 20.0%
!! AAAATAGAACAATGTCATAT+TGG + chr3_2:15057708-15057727 None:intergenic 20.0%
!!! TTCTATTTTAATATCTACAG+AGG - chr3_2:15057719-15057738 Msa0396530:intron 20.0%
!!! TCTATTTTAATATCTACAGA+GGG - chr3_2:15057720-15057739 Msa0396530:intron 20.0%
!! TACATATATATATCACCATT+AGG - chr3_2:15058522-15058541 Msa0396530:CDS 20.0%
!!! AATAGTCTTGATACTTAAAA+AGG + chr3_2:15058620-15058639 None:intergenic 20.0%
!!! CAAGACTATTTATTTTTCTT+TGG - chr3_2:15058630-15058649 Msa0396530:CDS 20.0%
!!! TTAACAAAATGTTATTTTCC+AGG - chr3_2:15058904-15058923 Msa0396530:intron 20.0%
!!! TGAGATAGAACAGATTTTTT+TGG - chr3_2:15055532-15055551 Msa0396530:three_prime_UTR 25.0%
!!! GAGATAGAACAGATTTTTTT+GGG - chr3_2:15055533-15055552 Msa0396530:three_prime_UTR 25.0%
! TTATACTTTATGAATGGTGT+AGG - chr3_2:15055694-15055713 Msa0396530:exon 25.0%
!! TTTTAAATTGCAATTGTGTC+GGG - chr3_2:15055722-15055741 Msa0396530:CDS 25.0%
! ACTGAAATTACAGAAAATTG+AGG - chr3_2:15055748-15055767 Msa0396530:CDS 25.0%
!! GTAATTTAAAATCATGTTGC+AGG - chr3_2:15055798-15055817 Msa0396530:CDS 25.0%
! TATGATATCATCTATGTTGT+GGG - chr3_2:15055834-15055853 Msa0396530:intron 25.0%
!!! TTATTTCTACAACAAATCTC+TGG - chr3_2:15056000-15056019 Msa0396530:intron 25.0%
! AAAAGGGAATATTATTTGTG+AGG - chr3_2:15056032-15056051 Msa0396530:intron 25.0%
! GAATATTATTTGTGAGGAAA+TGG - chr3_2:15056038-15056057 Msa0396530:intron 25.0%
!! TGAAATGGTGAAAATTTTGA+GGG - chr3_2:15056578-15056597 Msa0396530:intron 25.0%
!!! TTTGTCTAATTTTTTCTGAC+AGG - chr3_2:15057229-15057248 Msa0396530:intron 25.0%
! GTCAATAATATTAGGATGAA+AGG + chr3_2:15057377-15057396 None:intergenic 25.0%
! TTCAACTTTCAATAAATGCT+AGG + chr3_2:15057421-15057440 None:intergenic 25.0%
! ACATAACTTCTTAATCTTTG+AGG - chr3_2:15057571-15057590 Msa0396530:intron 25.0%
! GATCTTTCACATATTAGATT+GGG - chr3_2:15057742-15057761 Msa0396530:intron 25.0%
! NNNNNNNNNNGCTGGATTGA+CGG + chr3_2:15058064-15058083 None:intergenic 25.0%
! NNNNNNNNNNATCATGGCCA+GGG - chr3_2:15058164-15058183 Msa0396530:CDS 25.0%
! TGAATGAAAGAAGGATTTAT+GGG + chr3_2:15058193-15058212 None:intergenic 25.0%
! ATGCAAAAACTTACAGAATA+TGG + chr3_2:15058277-15058296 None:intergenic 25.0%
! GCAAATGAGTAAAAGATTTA+TGG + chr3_2:15058304-15058323 None:intergenic 25.0%
!! AAATCTTTTACTCATTTGCT+TGG - chr3_2:15058305-15058324 Msa0396530:CDS 25.0%
!! AATCTTTTACTCATTTGCTT+GGG - chr3_2:15058306-15058325 Msa0396530:CDS 25.0%
! ATAAGTATGATCAAGTCATA+TGG - chr3_2:15058329-15058348 Msa0396530:CDS 25.0%
!! TAAGTGTTGTTAAGATATTC+TGG - chr3_2:15058484-15058503 Msa0396530:CDS 25.0%
! ATATATATCACCATTAGGAT+AGG - chr3_2:15058527-15058546 Msa0396530:CDS 25.0%
! CTAAACAGCAGAAATATAAT+AGG + chr3_2:15058657-15058676 None:intergenic 25.0%
! CTTATATTTGTCTTACATCT+TGG - chr3_2:15058734-15058753 Msa0396530:five_prime_UTR 25.0%
! ATTTCAACACAAAGTTTAAG+AGG + chr3_2:15058793-15058812 None:intergenic 25.0%
! ATCTGCATTTGAAGAATAAA+AGG - chr3_2:15059056-15059075 Msa0396530:intron 25.0%
!!! GAGTCAAAATTATGTTTTTG+CGG - chr3_2:15059081-15059100 Msa0396530:intron 25.0%
!!! AGTCAAAATTATGTTTTTGC+GGG - chr3_2:15059082-15059101 Msa0396530:intron 25.0%
! GTTAGTAACTTATATTGAAG+TGG - chr3_2:15059177-15059196 Msa0396530:intron 25.0%
!!! TGAGATAGAACAGATTTTTT+TGG - chr3_2:15055532-15055551 Msa0396530:three_prime_UTR 25.0%
!!! GAGATAGAACAGATTTTTTT+GGG - chr3_2:15055533-15055552 Msa0396530:three_prime_UTR 25.0%
! TTATACTTTATGAATGGTGT+AGG - chr3_2:15055694-15055713 Msa0396530:exon 25.0%
!! TTTTAAATTGCAATTGTGTC+GGG - chr3_2:15055722-15055741 Msa0396530:CDS 25.0%
! ACTGAAATTACAGAAAATTG+AGG - chr3_2:15055748-15055767 Msa0396530:CDS 25.0%
!! GTAATTTAAAATCATGTTGC+AGG - chr3_2:15055798-15055817 Msa0396530:CDS 25.0%
! TATGATATCATCTATGTTGT+GGG - chr3_2:15055834-15055853 Msa0396530:intron 25.0%
!!! TTATTTCTACAACAAATCTC+TGG - chr3_2:15056000-15056019 Msa0396530:intron 25.0%
! AAAAGGGAATATTATTTGTG+AGG - chr3_2:15056032-15056051 Msa0396530:intron 25.0%
! GAATATTATTTGTGAGGAAA+TGG - chr3_2:15056038-15056057 Msa0396530:intron 25.0%
!! TGAAATGGTGAAAATTTTGA+GGG - chr3_2:15056578-15056597 Msa0396530:intron 25.0%
!!! TTTGTCTAATTTTTTCTGAC+AGG - chr3_2:15057229-15057248 Msa0396530:intron 25.0%
! GTCAATAATATTAGGATGAA+AGG + chr3_2:15057377-15057396 None:intergenic 25.0%
! TTCAACTTTCAATAAATGCT+AGG + chr3_2:15057421-15057440 None:intergenic 25.0%
! ACATAACTTCTTAATCTTTG+AGG - chr3_2:15057571-15057590 Msa0396530:intron 25.0%
! GATCTTTCACATATTAGATT+GGG - chr3_2:15057742-15057761 Msa0396530:intron 25.0%
! NNNNNNNNNNGCTGGATTGA+CGG + chr3_2:15058064-15058083 None:intergenic 25.0%
! NNNNNNNNNNATCATGGCCA+GGG - chr3_2:15058164-15058183 Msa0396530:CDS 25.0%
! TGAATGAAAGAAGGATTTAT+GGG + chr3_2:15058193-15058212 None:intergenic 25.0%
! ATGCAAAAACTTACAGAATA+TGG + chr3_2:15058277-15058296 None:intergenic 25.0%
! GCAAATGAGTAAAAGATTTA+TGG + chr3_2:15058304-15058323 None:intergenic 25.0%
!! AAATCTTTTACTCATTTGCT+TGG - chr3_2:15058305-15058324 Msa0396530:CDS 25.0%
!! AATCTTTTACTCATTTGCTT+GGG - chr3_2:15058306-15058325 Msa0396530:CDS 25.0%
! ATAAGTATGATCAAGTCATA+TGG - chr3_2:15058329-15058348 Msa0396530:CDS 25.0%
!! TAAGTGTTGTTAAGATATTC+TGG - chr3_2:15058484-15058503 Msa0396530:CDS 25.0%
! ATATATATCACCATTAGGAT+AGG - chr3_2:15058527-15058546 Msa0396530:CDS 25.0%
! CTAAACAGCAGAAATATAAT+AGG + chr3_2:15058657-15058676 None:intergenic 25.0%
! CTTATATTTGTCTTACATCT+TGG - chr3_2:15058734-15058753 Msa0396530:five_prime_UTR 25.0%
! ATTTCAACACAAAGTTTAAG+AGG + chr3_2:15058793-15058812 None:intergenic 25.0%
! ATCTGCATTTGAAGAATAAA+AGG - chr3_2:15059056-15059075 Msa0396530:intron 25.0%
!!! GAGTCAAAATTATGTTTTTG+CGG - chr3_2:15059081-15059100 Msa0396530:intron 25.0%
!!! AGTCAAAATTATGTTTTTGC+GGG - chr3_2:15059082-15059101 Msa0396530:intron 25.0%
! GTTAGTAACTTATATTGAAG+TGG - chr3_2:15059177-15059196 Msa0396530:intron 25.0%
! TTTTAGGCGAAGAACAAATT+TGG - chr3_2:15055493-15055512 Msa0396530:three_prime_UTR 30.0%
GTTCTATCTCATCTTATAAC+AGG + chr3_2:15055523-15055542 None:intergenic 30.0%
!!! ACAGATTTTTTTGGGTGAAA+TGG - chr3_2:15055541-15055560 Msa0396530:three_prime_UTR 30.0%
!!! CAGATTTTTTTGGGTGAAAT+GGG - chr3_2:15055542-15055561 Msa0396530:three_prime_UTR 30.0%
!!! AGATTTTTTTGGGTGAAATG+GGG - chr3_2:15055543-15055562 Msa0396530:three_prime_UTR 30.0%
!! ATGTTTGTTAATGTTTTGCC+TGG - chr3_2:15055579-15055598 Msa0396530:three_prime_UTR 30.0%
TACTAAACCATATTTCAACC+AGG + chr3_2:15055600-15055619 None:intergenic 30.0%
TTTAAATTGCAATTGTGTCG+GGG - chr3_2:15055723-15055742 Msa0396530:CDS 30.0%
CTATGATATCATCTATGTTG+TGG - chr3_2:15055833-15055852 Msa0396530:intron 30.0%
GCATGAATGTAAAAATGCAA+AGG + chr3_2:15055930-15055949 None:intergenic 30.0%
AAGGATAAGATATGATGAGA+CGG + chr3_2:15056176-15056195 None:intergenic 30.0%
TTGCTTAATCATTGAGGATT+TGG - chr3_2:15056401-15056420 Msa0396530:intron 30.0%
! CTGAAATGGTGAAAATTTTG+AGG - chr3_2:15056577-15056596 Msa0396530:intron 30.0%
CAAAGTTCTTAGATGAGAAT+AGG - chr3_2:15056640-15056659 Msa0396530:intron 30.0%
TCAAATAACTTCTTTCCTGT+TGG + chr3_2:15056753-15056772 None:intergenic 30.0%
ATAAGAATATCTCACCTTCT+CGG + chr3_2:15056850-15056869 None:intergenic 30.0%
! AAGAGAGAAAACAACTTTTG+TGG + chr3_2:15056931-15056950 None:intergenic 30.0%
! ATACATGACTCTTTCAAGTA+TGG + chr3_2:15056954-15056973 None:intergenic 30.0%
ATCATCAACTAGATTGTAAG+TGG - chr3_2:15056987-15057006 Msa0396530:CDS 30.0%
AGCTTCTATTTAACAACACT+AGG + chr3_2:15057021-15057040 None:intergenic 30.0%
!!! TCTAATTTTTTCTGACAGGT+TGG - chr3_2:15057233-15057252 Msa0396530:intron 30.0%
! TAAGGAATCTTTTACGTTTC+TGG - chr3_2:15057500-15057519 Msa0396530:intron 30.0%
GTTTCTCTGCAATCTTTAAT+AGG + chr3_2:15057553-15057572 None:intergenic 30.0%
ATGAGGAATCTAGAAAGAAA+AGG + chr3_2:15057673-15057692 None:intergenic 30.0%
GGATCTTTCACATATTAGAT+TGG - chr3_2:15057741-15057760 Msa0396530:intron 30.0%
GTAAATGCTCATATAATCTC+TGG - chr3_2:15057773-15057792 Msa0396530:intron 30.0%
TATGAAGCCAATTACAAAGT+CGG + chr3_2:15058040-15058059 None:intergenic 30.0%
CTGAATGAAAGAAGGATTTA+TGG + chr3_2:15058194-15058213 None:intergenic 30.0%
CATAAATCCTTCTTTCATTC+AGG - chr3_2:15058192-15058211 Msa0396530:CDS 30.0%
! CATTTTCAATGTTGATACAG+AGG + chr3_2:15058450-15058469 None:intergenic 30.0%
! TCTTTTCTTTCCTATCCTAA+TGG + chr3_2:15058540-15058559 None:intergenic 30.0%
AGAATAAATTCTTCGTTTGC+TGG - chr3_2:15058563-15058582 Msa0396530:CDS 30.0%
! CAAAACAAATTAGCTTCACA+AGG + chr3_2:15058593-15058612 None:intergenic 30.0%
CAAAGTTTAAGAGGTTGAAT+GGG + chr3_2:15058784-15058803 None:intergenic 30.0%
ACAAAGTTTAAGAGGTTGAA+TGG + chr3_2:15058785-15058804 None:intergenic 30.0%
TGAAAAGAGTAGAAAGATGA+TGG + chr3_2:15058838-15058857 None:intergenic 30.0%
GCATTTGTTTCATCAACTTT+AGG + chr3_2:15059257-15059276 None:intergenic 30.0%
! TTTTAGGCGAAGAACAAATT+TGG - chr3_2:15055493-15055512 Msa0396530:three_prime_UTR 30.0%
GTTCTATCTCATCTTATAAC+AGG + chr3_2:15055523-15055542 None:intergenic 30.0%
!!! ACAGATTTTTTTGGGTGAAA+TGG - chr3_2:15055541-15055560 Msa0396530:three_prime_UTR 30.0%
!!! CAGATTTTTTTGGGTGAAAT+GGG - chr3_2:15055542-15055561 Msa0396530:three_prime_UTR 30.0%
!!! AGATTTTTTTGGGTGAAATG+GGG - chr3_2:15055543-15055562 Msa0396530:three_prime_UTR 30.0%
!! ATGTTTGTTAATGTTTTGCC+TGG - chr3_2:15055579-15055598 Msa0396530:three_prime_UTR 30.0%
TACTAAACCATATTTCAACC+AGG + chr3_2:15055600-15055619 None:intergenic 30.0%
TTTAAATTGCAATTGTGTCG+GGG - chr3_2:15055723-15055742 Msa0396530:CDS 30.0%
CTATGATATCATCTATGTTG+TGG - chr3_2:15055833-15055852 Msa0396530:intron 30.0%
GCATGAATGTAAAAATGCAA+AGG + chr3_2:15055930-15055949 None:intergenic 30.0%
AAGGATAAGATATGATGAGA+CGG + chr3_2:15056176-15056195 None:intergenic 30.0%
TTGCTTAATCATTGAGGATT+TGG - chr3_2:15056401-15056420 Msa0396530:intron 30.0%
! CTGAAATGGTGAAAATTTTG+AGG - chr3_2:15056577-15056596 Msa0396530:intron 30.0%
CAAAGTTCTTAGATGAGAAT+AGG - chr3_2:15056640-15056659 Msa0396530:intron 30.0%
TCAAATAACTTCTTTCCTGT+TGG + chr3_2:15056753-15056772 None:intergenic 30.0%
ATAAGAATATCTCACCTTCT+CGG + chr3_2:15056850-15056869 None:intergenic 30.0%
! AAGAGAGAAAACAACTTTTG+TGG + chr3_2:15056931-15056950 None:intergenic 30.0%
! ATACATGACTCTTTCAAGTA+TGG + chr3_2:15056954-15056973 None:intergenic 30.0%
ATCATCAACTAGATTGTAAG+TGG - chr3_2:15056987-15057006 Msa0396530:CDS 30.0%
AGCTTCTATTTAACAACACT+AGG + chr3_2:15057021-15057040 None:intergenic 30.0%
!!! TCTAATTTTTTCTGACAGGT+TGG - chr3_2:15057233-15057252 Msa0396530:intron 30.0%
! TAAGGAATCTTTTACGTTTC+TGG - chr3_2:15057500-15057519 Msa0396530:intron 30.0%
GTTTCTCTGCAATCTTTAAT+AGG + chr3_2:15057553-15057572 None:intergenic 30.0%
ATGAGGAATCTAGAAAGAAA+AGG + chr3_2:15057673-15057692 None:intergenic 30.0%
GGATCTTTCACATATTAGAT+TGG - chr3_2:15057741-15057760 Msa0396530:intron 30.0%
GTAAATGCTCATATAATCTC+TGG - chr3_2:15057773-15057792 Msa0396530:intron 30.0%
TATGAAGCCAATTACAAAGT+CGG + chr3_2:15058040-15058059 None:intergenic 30.0%
CTGAATGAAAGAAGGATTTA+TGG + chr3_2:15058194-15058213 None:intergenic 30.0%
CATAAATCCTTCTTTCATTC+AGG - chr3_2:15058192-15058211 Msa0396530:CDS 30.0%
! CATTTTCAATGTTGATACAG+AGG + chr3_2:15058450-15058469 None:intergenic 30.0%
! TCTTTTCTTTCCTATCCTAA+TGG + chr3_2:15058540-15058559 None:intergenic 30.0%
AGAATAAATTCTTCGTTTGC+TGG - chr3_2:15058563-15058582 Msa0396530:CDS 30.0%
! CAAAACAAATTAGCTTCACA+AGG + chr3_2:15058593-15058612 None:intergenic 30.0%
CAAAGTTTAAGAGGTTGAAT+GGG + chr3_2:15058784-15058803 None:intergenic 30.0%
ACAAAGTTTAAGAGGTTGAA+TGG + chr3_2:15058785-15058804 None:intergenic 30.0%
TGAAAAGAGTAGAAAGATGA+TGG + chr3_2:15058838-15058857 None:intergenic 30.0%
GCATTTGTTTCATCAACTTT+AGG + chr3_2:15059257-15059276 None:intergenic 30.0%
! TGTTTTGCCTGGTTGAAATA+TGG - chr3_2:15055590-15055609 Msa0396530:three_prime_UTR 35.0%
TGAGGATGAATGCATCTATA+TGG - chr3_2:15055766-15055785 Msa0396530:CDS 35.0%
TAATGTGCACTGAATAACAC+AGG - chr3_2:15055977-15055996 Msa0396530:intron 35.0%
ATTTGACAGCTGATATCTCA+TGG + chr3_2:15056101-15056120 None:intergenic 35.0%
GAGATATCAGCTGTCAAATT+CGG - chr3_2:15056102-15056121 Msa0396530:intron 35.0%
ACATACAAGATCAAATGAGG+TGG + chr3_2:15056244-15056263 None:intergenic 35.0%
ACCTCATTTGATCTTGTATG+TGG - chr3_2:15056243-15056262 Msa0396530:intron 35.0%
ACCACATACAAGATCAAATG+AGG + chr3_2:15056247-15056266 None:intergenic 35.0%
CCTCAATGATTAAGCAACTT+TGG + chr3_2:15056398-15056417 None:intergenic 35.0%
CCAAAGTTGCTTAATCATTG+AGG - chr3_2:15056395-15056414 Msa0396530:intron 35.0%
!! GTGAAAATTTTGAGGGATCA+TGG - chr3_2:15056585-15056604 Msa0396530:intron 35.0%
GTTCTTAGATGAGAATAGGA+AGG - chr3_2:15056644-15056663 Msa0396530:intron 35.0%
AAAGACTTGACCTTGGTTAT+TGG + chr3_2:15056696-15056715 None:intergenic 35.0%
AAATGACAAAGACTTGACCT+TGG + chr3_2:15056703-15056722 None:intergenic 35.0%
AAGGTCAAGTCTTTGTCATT+TGG - chr3_2:15056702-15056721 Msa0396530:intron 35.0%
! AGGTCAAGTCTTTGTCATTT+GGG - chr3_2:15056703-15056722 Msa0396530:intron 35.0%
! ATTTGAGATAATGGCTCAGA+AGG - chr3_2:15056767-15056786 Msa0396530:CDS 35.0%
! GAATTCCTCTTTTACATGAG+AGG + chr3_2:15056885-15056904 None:intergenic 35.0%
TGAAAGAGTCATGTATTCTC+TGG - chr3_2:15056958-15056977 Msa0396530:CDS 35.0%
ATCAACTAGATTGTAAGTGG+TGG - chr3_2:15056990-15057009 Msa0396530:CDS 35.0%
ATGTACTAAATGGCGTATCA+CGG + chr3_2:15057087-15057106 None:intergenic 35.0%
CCAAAATCAGGAGTAAAATC+TGG + chr3_2:15057299-15057318 None:intergenic 35.0%
! CCAGATTTTACTCCTGATTT+TGG - chr3_2:15057296-15057315 Msa0396530:intron 35.0%
GGCAAAAACATGAACAGAAT+AGG + chr3_2:15057356-15057375 None:intergenic 35.0%
CATGTTTGTGTGAAGTTCTA+AGG - chr3_2:15057482-15057501 Msa0396530:CDS 35.0%
!!! CTTTTACGTTTCTGGTTTAG+TGG - chr3_2:15057508-15057527 Msa0396530:intron 35.0%
!! GATCGTAAATTTGCTGACAT+TGG - chr3_2:15057593-15057612 Msa0396530:intron 35.0%
AGATTCCTCATCTGTATCTA+AGG - chr3_2:15057682-15057701 Msa0396530:intron 35.0%
! TTGTTTCTTGAACCATACTC+AGG - chr3_2:15057906-15057925 Msa0396530:intron 35.0%
TGTTTCTTGAACCATACTCA+GGG - chr3_2:15057907-15057926 Msa0396530:CDS 35.0%
GAACATTCCGACTTTGTAAT+TGG - chr3_2:15058030-15058049 Msa0396530:CDS 35.0%
TAGACTGACAGTAACTCATT+TGG - chr3_2:15058361-15058380 Msa0396530:CDS 35.0%
AGTAACTCATTTGGACGAAA+AGG - chr3_2:15058370-15058389 Msa0396530:CDS 35.0%
GTAACTCATTTGGACGAAAA+GGG - chr3_2:15058371-15058390 Msa0396530:CDS 35.0%
TAACTCATTTGGACGAAAAG+GGG - chr3_2:15058372-15058391 Msa0396530:CDS 35.0%
TTAAGATATTCTGGTCCTTC+AGG - chr3_2:15058493-15058512 Msa0396530:CDS 35.0%
TAAGATATTCTGGTCCTTCA+GGG - chr3_2:15058494-15058513 Msa0396530:CDS 35.0%
ATATATGTATTAGCCCCTGA+AGG + chr3_2:15058511-15058530 None:intergenic 35.0%
AACAATTCTATCACGAGCTT+TGG - chr3_2:15058695-15058714 Msa0396530:exon 35.0%
TCTTGGTTGTGTTATAGAGA+TGG - chr3_2:15058751-15058770 Msa0396530:intron 35.0%
TCAACATTATAATGTACCCG+AGG + chr3_2:15059144-15059163 None:intergenic 35.0%
! AAGTGGCTTTTTGATGTTCT+TGG - chr3_2:15059194-15059213 Msa0396530:intron 35.0%
! ACAAATGCAAGCATTGTTTG+AGG - chr3_2:15059269-15059288 Msa0396530:intron 35.0%
! TGTTTTGCCTGGTTGAAATA+TGG - chr3_2:15055590-15055609 Msa0396530:three_prime_UTR 35.0%
TGAGGATGAATGCATCTATA+TGG - chr3_2:15055766-15055785 Msa0396530:CDS 35.0%
TAATGTGCACTGAATAACAC+AGG - chr3_2:15055977-15055996 Msa0396530:intron 35.0%
ATTTGACAGCTGATATCTCA+TGG + chr3_2:15056101-15056120 None:intergenic 35.0%
GAGATATCAGCTGTCAAATT+CGG - chr3_2:15056102-15056121 Msa0396530:intron 35.0%
ACATACAAGATCAAATGAGG+TGG + chr3_2:15056244-15056263 None:intergenic 35.0%
ACCTCATTTGATCTTGTATG+TGG - chr3_2:15056243-15056262 Msa0396530:intron 35.0%
ACCACATACAAGATCAAATG+AGG + chr3_2:15056247-15056266 None:intergenic 35.0%
CCTCAATGATTAAGCAACTT+TGG + chr3_2:15056398-15056417 None:intergenic 35.0%
CCAAAGTTGCTTAATCATTG+AGG - chr3_2:15056395-15056414 Msa0396530:intron 35.0%
!! GTGAAAATTTTGAGGGATCA+TGG - chr3_2:15056585-15056604 Msa0396530:intron 35.0%
GTTCTTAGATGAGAATAGGA+AGG - chr3_2:15056644-15056663 Msa0396530:intron 35.0%
AAAGACTTGACCTTGGTTAT+TGG + chr3_2:15056696-15056715 None:intergenic 35.0%
AAATGACAAAGACTTGACCT+TGG + chr3_2:15056703-15056722 None:intergenic 35.0%
AAGGTCAAGTCTTTGTCATT+TGG - chr3_2:15056702-15056721 Msa0396530:intron 35.0%
! AGGTCAAGTCTTTGTCATTT+GGG - chr3_2:15056703-15056722 Msa0396530:intron 35.0%
! ATTTGAGATAATGGCTCAGA+AGG - chr3_2:15056767-15056786 Msa0396530:CDS 35.0%
! GAATTCCTCTTTTACATGAG+AGG + chr3_2:15056885-15056904 None:intergenic 35.0%
TGAAAGAGTCATGTATTCTC+TGG - chr3_2:15056958-15056977 Msa0396530:CDS 35.0%
ATCAACTAGATTGTAAGTGG+TGG - chr3_2:15056990-15057009 Msa0396530:CDS 35.0%
ATGTACTAAATGGCGTATCA+CGG + chr3_2:15057087-15057106 None:intergenic 35.0%
CCAAAATCAGGAGTAAAATC+TGG + chr3_2:15057299-15057318 None:intergenic 35.0%
! CCAGATTTTACTCCTGATTT+TGG - chr3_2:15057296-15057315 Msa0396530:intron 35.0%
GGCAAAAACATGAACAGAAT+AGG + chr3_2:15057356-15057375 None:intergenic 35.0%
CATGTTTGTGTGAAGTTCTA+AGG - chr3_2:15057482-15057501 Msa0396530:CDS 35.0%
!!! CTTTTACGTTTCTGGTTTAG+TGG - chr3_2:15057508-15057527 Msa0396530:intron 35.0%
!! GATCGTAAATTTGCTGACAT+TGG - chr3_2:15057593-15057612 Msa0396530:intron 35.0%
AGATTCCTCATCTGTATCTA+AGG - chr3_2:15057682-15057701 Msa0396530:intron 35.0%
! TTGTTTCTTGAACCATACTC+AGG - chr3_2:15057906-15057925 Msa0396530:intron 35.0%
TGTTTCTTGAACCATACTCA+GGG - chr3_2:15057907-15057926 Msa0396530:CDS 35.0%
GAACATTCCGACTTTGTAAT+TGG - chr3_2:15058030-15058049 Msa0396530:CDS 35.0%
TAGACTGACAGTAACTCATT+TGG - chr3_2:15058361-15058380 Msa0396530:CDS 35.0%
AGTAACTCATTTGGACGAAA+AGG - chr3_2:15058370-15058389 Msa0396530:CDS 35.0%
GTAACTCATTTGGACGAAAA+GGG - chr3_2:15058371-15058390 Msa0396530:CDS 35.0%
TAACTCATTTGGACGAAAAG+GGG - chr3_2:15058372-15058391 Msa0396530:CDS 35.0%
TTAAGATATTCTGGTCCTTC+AGG - chr3_2:15058493-15058512 Msa0396530:CDS 35.0%
TAAGATATTCTGGTCCTTCA+GGG - chr3_2:15058494-15058513 Msa0396530:CDS 35.0%
ATATATGTATTAGCCCCTGA+AGG + chr3_2:15058511-15058530 None:intergenic 35.0%
AACAATTCTATCACGAGCTT+TGG - chr3_2:15058695-15058714 Msa0396530:exon 35.0%
TCTTGGTTGTGTTATAGAGA+TGG - chr3_2:15058751-15058770 Msa0396530:intron 35.0%
TCAACATTATAATGTACCCG+AGG + chr3_2:15059144-15059163 None:intergenic 35.0%
! AAGTGGCTTTTTGATGTTCT+TGG - chr3_2:15059194-15059213 Msa0396530:intron 35.0%
! ACAAATGCAAGCATTGTTTG+AGG - chr3_2:15059269-15059288 Msa0396530:intron 35.0%
TATCTCGAGTTTCATCACTG+TGG - chr3_2:15055425-15055444 Msa0396530:three_prime_UTR 40.0%
ATCTCGAGTTTCATCACTGT+GGG - chr3_2:15055426-15055445 Msa0396530:three_prime_UTR 40.0%
TTCATCACTGTGGGTGTATT+TGG - chr3_2:15055435-15055454 Msa0396530:three_prime_UTR 40.0%
GAATGCATCTATATGGTTGC+TGG - chr3_2:15055773-15055792 Msa0396530:CDS 40.0%
!! ATCTCTGGAACACACTCAAA+AGG - chr3_2:15056015-15056034 Msa0396530:intron 40.0%
!! TCTCTGGAACACACTCAAAA+GGG - chr3_2:15056016-15056035 Msa0396530:intron 40.0%
GATAAGATATGATGAGACGG+AGG + chr3_2:15056173-15056192 None:intergenic 40.0%
GGAAGAGACAGAGGAAATTA+GGG + chr3_2:15056223-15056242 None:intergenic 40.0%
TGGAAGAGACAGAGGAAATT+AGG + chr3_2:15056224-15056243 None:intergenic 40.0%
CGTAAGGAAGTCAAAGACTA+CGG - chr3_2:15056336-15056355 Msa0396530:intron 40.0%
AGGCTTGAAATCACCTTCAA+TGG + chr3_2:15056373-15056392 None:intergenic 40.0%
ATTGAAGGTGATTTCAAGCC+TGG - chr3_2:15056372-15056391 Msa0396530:intron 40.0%
ATGATTAAGCAACTTTGGCC+AGG + chr3_2:15056393-15056412 None:intergenic 40.0%
! ATTGAGGATTTGGTTACCAG+TGG - chr3_2:15056411-15056430 Msa0396530:intron 40.0%
! TACCAGTGGAACATCAGTTT+TGG - chr3_2:15056425-15056444 Msa0396530:intron 40.0%
TTCCAAAACTGATGTTCCAC+TGG + chr3_2:15056430-15056449 None:intergenic 40.0%
TGATTGATAGAGAGCAAGGT+GGG - chr3_2:15056502-15056521 Msa0396530:CDS 40.0%
! GGTCAAGTCTTTGTCATTTG+GGG - chr3_2:15056704-15056723 Msa0396530:intron 40.0%
! AGTCTTTGTCATTTGGGGAA+AGG - chr3_2:15056709-15056728 Msa0396530:intron 40.0%
! GTCTTTGTCATTTGGGGAAA+GGG - chr3_2:15056710-15056729 Msa0396530:intron 40.0%
AATCTGTCCAAGAATCCAAC+AGG - chr3_2:15056735-15056754 Msa0396530:CDS 40.0%
CTTCTTTCCTGTTGGATTCT+TGG + chr3_2:15056745-15056764 None:intergenic 40.0%
GAAGGAGAGTAATCTGTGTT+TGG - chr3_2:15056785-15056804 Msa0396530:CDS 40.0%
ATTGCTTGAAATTGCCGAGA+AGG - chr3_2:15056833-15056852 Msa0396530:intron 40.0%
TGAAGCCTCTCATGTAAAAG+AGG - chr3_2:15056877-15056896 Msa0396530:intron 40.0%
CTAGATTGTAAGTGGTGGTT+TGG - chr3_2:15056995-15057014 Msa0396530:CDS 40.0%
TTGTGAAATAGCAGCTAGAG+TGG - chr3_2:15057111-15057130 Msa0396530:intron 40.0%
AGAAGCTTAGAGCCAAAATC+AGG + chr3_2:15057311-15057330 None:intergenic 40.0%
!!! TTTTGGCTCTAAGCTTCTCT+CGG - chr3_2:15057313-15057332 Msa0396530:intron 40.0%
ACAGTAACCATGCAATATGC+AGG - chr3_2:15057620-15057639 Msa0396530:intron 40.0%
CAGTAACCATGCAATATGCA+GGG - chr3_2:15057621-15057640 Msa0396530:intron 40.0%
ACTATACCCTGCATATTGCA+TGG + chr3_2:15057630-15057649 None:intergenic 40.0%
!! ATTGGCCTTAGATACAGATG+AGG + chr3_2:15057690-15057709 None:intergenic 40.0%
!! CGTGGATGGACTAAAATTGA+AGG - chr3_2:15057805-15057824 Msa0396530:intron 40.0%
TGCTGCATTGAAAATTGCTG+AGG - chr3_2:15058008-15058027 Msa0396530:CDS 40.0%
CTGATCTTAAGATGGTACAG+TGG + chr3_2:15058410-15058429 None:intergenic 40.0%
ACCATCTTAAGATCAGACAG+AGG - chr3_2:15058414-15058433 Msa0396530:CDS 40.0%
TTAAGATCAGACAGAGGCTT+AGG - chr3_2:15058420-15058439 Msa0396530:CDS 40.0%
AAGATATTCTGGTCCTTCAG+GGG - chr3_2:15058495-15058514 Msa0396530:CDS 40.0%
! TAATGTCACTTCCTCTATCG+TGG + chr3_2:15058934-15058953 None:intergenic 40.0%
GGAAGTGACATTATCATCGT+TGG - chr3_2:15058941-15058960 Msa0396530:intron 40.0%
CCAAATATGCATTCCATCCT+TGG + chr3_2:15059021-15059040 None:intergenic 40.0%
CCAAGGATGGAATGCATATT+TGG - chr3_2:15059018-15059037 Msa0396530:intron 40.0%
ATGCAGATCTCAAGCAGATT+TGG + chr3_2:15059044-15059063 None:intergenic 40.0%
CTAATTTCACTGTAACCCAG+AGG - chr3_2:15059114-15059133 Msa0396530:intron 40.0%
TATCTCGAGTTTCATCACTG+TGG - chr3_2:15055425-15055444 Msa0396530:three_prime_UTR 40.0%
ATCTCGAGTTTCATCACTGT+GGG - chr3_2:15055426-15055445 Msa0396530:three_prime_UTR 40.0%
TTCATCACTGTGGGTGTATT+TGG - chr3_2:15055435-15055454 Msa0396530:three_prime_UTR 40.0%
GAATGCATCTATATGGTTGC+TGG - chr3_2:15055773-15055792 Msa0396530:CDS 40.0%
!! ATCTCTGGAACACACTCAAA+AGG - chr3_2:15056015-15056034 Msa0396530:intron 40.0%
!! TCTCTGGAACACACTCAAAA+GGG - chr3_2:15056016-15056035 Msa0396530:intron 40.0%
GATAAGATATGATGAGACGG+AGG + chr3_2:15056173-15056192 None:intergenic 40.0%
GGAAGAGACAGAGGAAATTA+GGG + chr3_2:15056223-15056242 None:intergenic 40.0%
TGGAAGAGACAGAGGAAATT+AGG + chr3_2:15056224-15056243 None:intergenic 40.0%
CGTAAGGAAGTCAAAGACTA+CGG - chr3_2:15056336-15056355 Msa0396530:intron 40.0%
AGGCTTGAAATCACCTTCAA+TGG + chr3_2:15056373-15056392 None:intergenic 40.0%
ATTGAAGGTGATTTCAAGCC+TGG - chr3_2:15056372-15056391 Msa0396530:intron 40.0%
ATGATTAAGCAACTTTGGCC+AGG + chr3_2:15056393-15056412 None:intergenic 40.0%
! ATTGAGGATTTGGTTACCAG+TGG - chr3_2:15056411-15056430 Msa0396530:intron 40.0%
! TACCAGTGGAACATCAGTTT+TGG - chr3_2:15056425-15056444 Msa0396530:intron 40.0%
TTCCAAAACTGATGTTCCAC+TGG + chr3_2:15056430-15056449 None:intergenic 40.0%
TGATTGATAGAGAGCAAGGT+GGG - chr3_2:15056502-15056521 Msa0396530:CDS 40.0%
! GGTCAAGTCTTTGTCATTTG+GGG - chr3_2:15056704-15056723 Msa0396530:intron 40.0%
! AGTCTTTGTCATTTGGGGAA+AGG - chr3_2:15056709-15056728 Msa0396530:intron 40.0%
! GTCTTTGTCATTTGGGGAAA+GGG - chr3_2:15056710-15056729 Msa0396530:intron 40.0%
AATCTGTCCAAGAATCCAAC+AGG - chr3_2:15056735-15056754 Msa0396530:CDS 40.0%
CTTCTTTCCTGTTGGATTCT+TGG + chr3_2:15056745-15056764 None:intergenic 40.0%
GAAGGAGAGTAATCTGTGTT+TGG - chr3_2:15056785-15056804 Msa0396530:CDS 40.0%
ATTGCTTGAAATTGCCGAGA+AGG - chr3_2:15056833-15056852 Msa0396530:intron 40.0%
TGAAGCCTCTCATGTAAAAG+AGG - chr3_2:15056877-15056896 Msa0396530:intron 40.0%
CTAGATTGTAAGTGGTGGTT+TGG - chr3_2:15056995-15057014 Msa0396530:CDS 40.0%
TTGTGAAATAGCAGCTAGAG+TGG - chr3_2:15057111-15057130 Msa0396530:intron 40.0%
AGAAGCTTAGAGCCAAAATC+AGG + chr3_2:15057311-15057330 None:intergenic 40.0%
!!! TTTTGGCTCTAAGCTTCTCT+CGG - chr3_2:15057313-15057332 Msa0396530:intron 40.0%
ACAGTAACCATGCAATATGC+AGG - chr3_2:15057620-15057639 Msa0396530:intron 40.0%
CAGTAACCATGCAATATGCA+GGG - chr3_2:15057621-15057640 Msa0396530:intron 40.0%
ACTATACCCTGCATATTGCA+TGG + chr3_2:15057630-15057649 None:intergenic 40.0%
!! ATTGGCCTTAGATACAGATG+AGG + chr3_2:15057690-15057709 None:intergenic 40.0%
!! CGTGGATGGACTAAAATTGA+AGG - chr3_2:15057805-15057824 Msa0396530:intron 40.0%
TGCTGCATTGAAAATTGCTG+AGG - chr3_2:15058008-15058027 Msa0396530:CDS 40.0%
CTGATCTTAAGATGGTACAG+TGG + chr3_2:15058410-15058429 None:intergenic 40.0%
ACCATCTTAAGATCAGACAG+AGG - chr3_2:15058414-15058433 Msa0396530:CDS 40.0%
TTAAGATCAGACAGAGGCTT+AGG - chr3_2:15058420-15058439 Msa0396530:CDS 40.0%
AAGATATTCTGGTCCTTCAG+GGG - chr3_2:15058495-15058514 Msa0396530:CDS 40.0%
! TAATGTCACTTCCTCTATCG+TGG + chr3_2:15058934-15058953 None:intergenic 40.0%
GGAAGTGACATTATCATCGT+TGG - chr3_2:15058941-15058960 Msa0396530:intron 40.0%
CCAAATATGCATTCCATCCT+TGG + chr3_2:15059021-15059040 None:intergenic 40.0%
CCAAGGATGGAATGCATATT+TGG - chr3_2:15059018-15059037 Msa0396530:intron 40.0%
ATGCAGATCTCAAGCAGATT+TGG + chr3_2:15059044-15059063 None:intergenic 40.0%
CTAATTTCACTGTAACCCAG+AGG - chr3_2:15059114-15059133 Msa0396530:intron 40.0%
TCACTGTGGGTGTATTTGGA+AGG - chr3_2:15055439-15055458 Msa0396530:three_prime_UTR 45.0%
GGAAATGGCGTCATCATCAT+TGG - chr3_2:15056053-15056072 Msa0396530:intron 45.0%
GGCAACTTCAAGCTCAAATC+TGG - chr3_2:15056123-15056142 Msa0396530:intron 45.0%
GAGGTCAATGTAGATTGGTG+AGG + chr3_2:15056154-15056173 None:intergenic 45.0%
AGACGGAGGTCAATGTAGAT+TGG + chr3_2:15056159-15056178 None:intergenic 45.0%
!! GAGATTTGCTGGAGAAGAGA+AGG + chr3_2:15056195-15056214 None:intergenic 45.0%
TTAGGGTCTGAGAGATTTGC+TGG + chr3_2:15056206-15056225 None:intergenic 45.0%
AAATGAGGTGGAAGAGACAG+AGG + chr3_2:15056232-15056251 None:intergenic 45.0%
CAATGGGTAAGGCAGTGTAA+GGG + chr3_2:15056272-15056291 None:intergenic 45.0%
AGAGAGACACATGTGGCAAT+GGG + chr3_2:15056288-15056307 None:intergenic 45.0%
AAGAGAGACACATGTGGCAA+TGG + chr3_2:15056289-15056308 None:intergenic 45.0%
GTCCTGATTGATAGAGAGCA+AGG - chr3_2:15056498-15056517 Msa0396530:CDS 45.0%
CACCTTGCTCTCTATCAATC+AGG + chr3_2:15056503-15056522 None:intergenic 45.0%
CTGATTGATAGAGAGCAAGG+TGG - chr3_2:15056501-15056520 Msa0396530:CDS 45.0%
CGGGAAAATTTGGAGGAGAA+TGG - chr3_2:15056525-15056544 Msa0396530:CDS 45.0%
!! TGGAAGACTTGATGACGAGA+TGG - chr3_2:15056605-15056624 Msa0396530:intron 45.0%
!! AGACTTGATGACGAGATGGT+AGG - chr3_2:15056609-15056628 Msa0396530:intron 45.0%
!! GACTTGATGACGAGATGGTA+GGG - chr3_2:15056610-15056629 Msa0396530:intron 45.0%
!! ACTTGATGACGAGATGGTAG+GGG - chr3_2:15056611-15056630 Msa0396530:intron 45.0%
GGTTGAGAAGCCAATAACCA+AGG - chr3_2:15056683-15056702 Msa0396530:intron 45.0%
!! GCTATAGCAGTGTTGCTTAG+CGG - chr3_2:15057135-15057154 Msa0396530:CDS 45.0%
TTGCAGATCGCGGAAAATAG+TGG + chr3_2:15057173-15057192 None:intergenic 45.0%
TTCCGCGATCTGCAATTGTT+TGG - chr3_2:15057178-15057197 Msa0396530:CDS 45.0%
GTCTTCAGCAAGCATATCTC+AGG + chr3_2:15057260-15057279 None:intergenic 45.0%
! ATGCTTGCTGAAGACTCATG+TGG - chr3_2:15057265-15057284 Msa0396530:intron 45.0%
GCTCATATAATCTCTGGTCC+TGG - chr3_2:15057779-15057798 Msa0396530:intron 45.0%
TTTAGTCCATCCACGATTCC+AGG + chr3_2:15057800-15057819 None:intergenic 45.0%
CTTGCTGAAATGAGTTCAGC+CGG - chr3_2:15057958-15057977 Msa0396530:CDS 45.0%
CAGTATAATCTCCCTTGGCA+AGG + chr3_2:15057987-15058006 None:intergenic 45.0%
AGCAGCAGTATAATCTCCCT+TGG + chr3_2:15057992-15058011 None:intergenic 45.0%
GGAGTTGCCTGAATGAAAGA+AGG + chr3_2:15058202-15058221 None:intergenic 45.0%
TCTTTCATTCAGGCAACTCC+TGG - chr3_2:15058202-15058221 Msa0396530:CDS 45.0%
GCCTCTGTCTGATCTTAAGA+TGG + chr3_2:15058418-15058437 None:intergenic 45.0%
GACATTATCATCGTTGGACG+TGG - chr3_2:15058947-15058966 Msa0396530:intron 45.0%
ATGAATACCGTGTCCAAGGA+TGG - chr3_2:15059005-15059024 Msa0396530:intron 45.0%
ATGCATTCCATCCTTGGACA+CGG + chr3_2:15059015-15059034 None:intergenic 45.0%
TTTCACTGTAACCCAGAGGA+AGG - chr3_2:15059118-15059137 Msa0396530:intron 45.0%
TCACTGTGGGTGTATTTGGA+AGG - chr3_2:15055439-15055458 Msa0396530:three_prime_UTR 45.0%
GGAAATGGCGTCATCATCAT+TGG - chr3_2:15056053-15056072 Msa0396530:intron 45.0%
GGCAACTTCAAGCTCAAATC+TGG - chr3_2:15056123-15056142 Msa0396530:intron 45.0%
GAGGTCAATGTAGATTGGTG+AGG + chr3_2:15056154-15056173 None:intergenic 45.0%
AGACGGAGGTCAATGTAGAT+TGG + chr3_2:15056159-15056178 None:intergenic 45.0%
!! GAGATTTGCTGGAGAAGAGA+AGG + chr3_2:15056195-15056214 None:intergenic 45.0%
TTAGGGTCTGAGAGATTTGC+TGG + chr3_2:15056206-15056225 None:intergenic 45.0%
AAATGAGGTGGAAGAGACAG+AGG + chr3_2:15056232-15056251 None:intergenic 45.0%
CAATGGGTAAGGCAGTGTAA+GGG + chr3_2:15056272-15056291 None:intergenic 45.0%
AGAGAGACACATGTGGCAAT+GGG + chr3_2:15056288-15056307 None:intergenic 45.0%
AAGAGAGACACATGTGGCAA+TGG + chr3_2:15056289-15056308 None:intergenic 45.0%
GTCCTGATTGATAGAGAGCA+AGG - chr3_2:15056498-15056517 Msa0396530:CDS 45.0%
CACCTTGCTCTCTATCAATC+AGG + chr3_2:15056503-15056522 None:intergenic 45.0%
CTGATTGATAGAGAGCAAGG+TGG - chr3_2:15056501-15056520 Msa0396530:CDS 45.0%
CGGGAAAATTTGGAGGAGAA+TGG - chr3_2:15056525-15056544 Msa0396530:CDS 45.0%
!! TGGAAGACTTGATGACGAGA+TGG - chr3_2:15056605-15056624 Msa0396530:intron 45.0%
!! AGACTTGATGACGAGATGGT+AGG - chr3_2:15056609-15056628 Msa0396530:intron 45.0%
!! GACTTGATGACGAGATGGTA+GGG - chr3_2:15056610-15056629 Msa0396530:intron 45.0%
!! ACTTGATGACGAGATGGTAG+GGG - chr3_2:15056611-15056630 Msa0396530:intron 45.0%
GGTTGAGAAGCCAATAACCA+AGG - chr3_2:15056683-15056702 Msa0396530:intron 45.0%
!! GCTATAGCAGTGTTGCTTAG+CGG - chr3_2:15057135-15057154 Msa0396530:CDS 45.0%
TTGCAGATCGCGGAAAATAG+TGG + chr3_2:15057173-15057192 None:intergenic 45.0%
TTCCGCGATCTGCAATTGTT+TGG - chr3_2:15057178-15057197 Msa0396530:CDS 45.0%
GTCTTCAGCAAGCATATCTC+AGG + chr3_2:15057260-15057279 None:intergenic 45.0%
! ATGCTTGCTGAAGACTCATG+TGG - chr3_2:15057265-15057284 Msa0396530:intron 45.0%
GCTCATATAATCTCTGGTCC+TGG - chr3_2:15057779-15057798 Msa0396530:intron 45.0%
TTTAGTCCATCCACGATTCC+AGG + chr3_2:15057800-15057819 None:intergenic 45.0%
CTTGCTGAAATGAGTTCAGC+CGG - chr3_2:15057958-15057977 Msa0396530:CDS 45.0%
CAGTATAATCTCCCTTGGCA+AGG + chr3_2:15057987-15058006 None:intergenic 45.0%
AGCAGCAGTATAATCTCCCT+TGG + chr3_2:15057992-15058011 None:intergenic 45.0%
GGAGTTGCCTGAATGAAAGA+AGG + chr3_2:15058202-15058221 None:intergenic 45.0%
TCTTTCATTCAGGCAACTCC+TGG - chr3_2:15058202-15058221 Msa0396530:CDS 45.0%
GCCTCTGTCTGATCTTAAGA+TGG + chr3_2:15058418-15058437 None:intergenic 45.0%
GACATTATCATCGTTGGACG+TGG - chr3_2:15058947-15058966 Msa0396530:intron 45.0%
ATGAATACCGTGTCCAAGGA+TGG - chr3_2:15059005-15059024 Msa0396530:intron 45.0%
ATGCATTCCATCCTTGGACA+CGG + chr3_2:15059015-15059034 None:intergenic 45.0%
TTTCACTGTAACCCAGAGGA+AGG - chr3_2:15059118-15059137 Msa0396530:intron 45.0%
GGGTGAAATGGGGTAGTGTA+TGG - chr3_2:15055553-15055572 Msa0396530:three_prime_UTR 50.0%
GCAATGGGTAAGGCAGTGTA+AGG + chr3_2:15056273-15056292 None:intergenic 50.0%
GACACATGTGGCAATGGGTA+AGG + chr3_2:15056283-15056302 None:intergenic 50.0%
CTGAGCAAGAGAGACACATG+TGG + chr3_2:15056295-15056314 None:intergenic 50.0%
TCCTTACGACGCATGACCAT+GGG + chr3_2:15056324-15056343 None:intergenic 50.0%
TTCCTTACGACGCATGACCA+TGG + chr3_2:15056325-15056344 None:intergenic 50.0%
GGCACTGCTAAAGCCATTGA+AGG - chr3_2:15056357-15056376 Msa0396530:intron 50.0%
TTCAACCCCACAGAACGTAG+TGG + chr3_2:15056462-15056481 None:intergenic 50.0%
TTGATAGAGAGCAAGGTGGG+CGG - chr3_2:15056505-15056524 Msa0396530:CDS 50.0%
GAATAGGAAGGTTGCAGCTG+TGG - chr3_2:15056656-15056675 Msa0396530:intron 50.0%
CTGTGTTTGGCTGCAGATGT+TGG - chr3_2:15056798-15056817 Msa0396530:CDS 50.0%
GGCGTATCACGGAACAATAG+TGG + chr3_2:15057076-15057095 None:intergenic 50.0%
GGCCAAACAATTGCAGATCG+CGG + chr3_2:15057183-15057202 None:intergenic 50.0%
AATCTCTGGTCCTGGAATCG+TGG - chr3_2:15057787-15057806 Msa0396530:intron 50.0%
ATCTCCCTTGGCAAGGTTAC+CGG + chr3_2:15057980-15057999 None:intergenic 50.0%
GGCAACTCCTGGAGTTCAAA+TGG - chr3_2:15058213-15058232 Msa0396530:CDS 50.0%
CCAGTCACCATTTGAACTCC+AGG + chr3_2:15058223-15058242 None:intergenic 50.0%
CCTGGAGTTCAAATGGTGAC+TGG - chr3_2:15058220-15058239 Msa0396530:CDS 50.0%
GGAGTTCAAATGGTGACTGG+TGG - chr3_2:15058223-15058242 Msa0396530:CDS 50.0%
! TGACTGGTGGCGATGGTTTA+GGG - chr3_2:15058236-15058255 Msa0396530:CDS 50.0%
GACGAAAAGGGGTAAGAGAC+AGG - chr3_2:15058383-15058402 Msa0396530:CDS 50.0%
GATCAGACAGAGGCTTAGGT+AGG - chr3_2:15058424-15058443 Msa0396530:CDS 50.0%
TATTCATGAGCTGCCTCAGC+AGG + chr3_2:15058992-15059011 None:intergenic 50.0%
GCTCATGAATACCGTGTCCA+AGG - chr3_2:15059001-15059020 Msa0396530:intron 50.0%
GGGTGAAATGGGGTAGTGTA+TGG - chr3_2:15055553-15055572 Msa0396530:three_prime_UTR 50.0%
GCAATGGGTAAGGCAGTGTA+AGG + chr3_2:15056273-15056292 None:intergenic 50.0%
GACACATGTGGCAATGGGTA+AGG + chr3_2:15056283-15056302 None:intergenic 50.0%
CTGAGCAAGAGAGACACATG+TGG + chr3_2:15056295-15056314 None:intergenic 50.0%
TCCTTACGACGCATGACCAT+GGG + chr3_2:15056324-15056343 None:intergenic 50.0%
TTCCTTACGACGCATGACCA+TGG + chr3_2:15056325-15056344 None:intergenic 50.0%
GGCACTGCTAAAGCCATTGA+AGG - chr3_2:15056357-15056376 Msa0396530:intron 50.0%
TTCAACCCCACAGAACGTAG+TGG + chr3_2:15056462-15056481 None:intergenic 50.0%
TTGATAGAGAGCAAGGTGGG+CGG - chr3_2:15056505-15056524 Msa0396530:CDS 50.0%
GAATAGGAAGGTTGCAGCTG+TGG - chr3_2:15056656-15056675 Msa0396530:intron 50.0%
CTGTGTTTGGCTGCAGATGT+TGG - chr3_2:15056798-15056817 Msa0396530:CDS 50.0%
GGCGTATCACGGAACAATAG+TGG + chr3_2:15057076-15057095 None:intergenic 50.0%
GGCCAAACAATTGCAGATCG+CGG + chr3_2:15057183-15057202 None:intergenic 50.0%
AATCTCTGGTCCTGGAATCG+TGG - chr3_2:15057787-15057806 Msa0396530:intron 50.0%
ATCTCCCTTGGCAAGGTTAC+CGG + chr3_2:15057980-15057999 None:intergenic 50.0%
GGCAACTCCTGGAGTTCAAA+TGG - chr3_2:15058213-15058232 Msa0396530:CDS 50.0%
CCAGTCACCATTTGAACTCC+AGG + chr3_2:15058223-15058242 None:intergenic 50.0%
CCTGGAGTTCAAATGGTGAC+TGG - chr3_2:15058220-15058239 Msa0396530:CDS 50.0%
GGAGTTCAAATGGTGACTGG+TGG - chr3_2:15058223-15058242 Msa0396530:CDS 50.0%
! TGACTGGTGGCGATGGTTTA+GGG - chr3_2:15058236-15058255 Msa0396530:CDS 50.0%
GACGAAAAGGGGTAAGAGAC+AGG - chr3_2:15058383-15058402 Msa0396530:CDS 50.0%
GATCAGACAGAGGCTTAGGT+AGG - chr3_2:15058424-15058443 Msa0396530:CDS 50.0%
TATTCATGAGCTGCCTCAGC+AGG + chr3_2:15058992-15059011 None:intergenic 50.0%
GCTCATGAATACCGTGTCCA+AGG - chr3_2:15059001-15059020 Msa0396530:intron 50.0%
! TCTTGCTCAGAGCATCCCCA+TGG - chr3_2:15056305-15056324 Msa0396530:intron 55.0%
CCTTACGACGCATGACCATG+GGG + chr3_2:15056323-15056342 None:intergenic 55.0%
AGCTGCACCACTACGTTCTG+TGG - chr3_2:15056452-15056471 Msa0396530:intron 55.0%
GCTGCACCACTACGTTCTGT+GGG - chr3_2:15056453-15056472 Msa0396530:intron 55.0%
CTGCACCACTACGTTCTGTG+GGG - chr3_2:15056454-15056473 Msa0396530:intron 55.0%
GGGGTTGAAGATCAGTGACG+CGG - chr3_2:15056473-15056492 Msa0396530:intron 55.0%
TGATAGAGAGCAAGGTGGGC+GGG - chr3_2:15056506-15056525 Msa0396530:CDS 55.0%
GCAAGGTGGGCGGGAAAATT+TGG - chr3_2:15056515-15056534 Msa0396530:CDS 55.0%
AGGTGGGCGGGAAAATTTGG+AGG - chr3_2:15056518-15056537 Msa0396530:CDS 55.0%
GAAGGTTGCAGCTGTGGCAA+AGG - chr3_2:15056662-15056681 Msa0396530:intron 55.0%
TCTGGTCCTGGAATCGTGGA+TGG - chr3_2:15057791-15057810 Msa0396530:intron 55.0%
CACGAGGCAAACCCTGAGTA+TGG + chr3_2:15057921-15057940 None:intergenic 55.0%
CATACTCAGGGTTTGCCTCG+TGG - chr3_2:15057919-15057938 Msa0396530:CDS 55.0%
TCAGGGTTTGCCTCGTGGTA+GGG - chr3_2:15057924-15057943 Msa0396530:CDS 55.0%
AGCAATAGTCCCCTACCACG+AGG + chr3_2:15057937-15057956 None:intergenic 55.0%
TTCAGCCGGTAACCTTGCCA+AGG - chr3_2:15057972-15057991 Msa0396530:CDS 55.0%
TCAGCCGGTAACCTTGCCAA+GGG - chr3_2:15057973-15057992 Msa0396530:CDS 55.0%
GAAGGATTTATGGGTGCCCC+TGG + chr3_2:15058184-15058203 None:intergenic 55.0%
! CAAATGGTGACTGGTGGCGA+TGG - chr3_2:15058229-15058248 Msa0396530:CDS 55.0%
! GTGACTGGTGGCGATGGTTT+AGG - chr3_2:15058235-15058254 Msa0396530:CDS 55.0%
TTCCAGGTCGTCCACGATAG+AGG - chr3_2:15058920-15058939 Msa0396530:intron 55.0%
TTCCTCTATCGTGGACGACC+TGG + chr3_2:15058925-15058944 None:intergenic 55.0%
CGTTGGACGTGGCATCATCA+AGG - chr3_2:15058958-15058977 Msa0396530:intron 55.0%
CAAGGCAGCAAATCCTGCTG+AGG - chr3_2:15058976-15058995 Msa0396530:intron 55.0%
TGTAACCCAGAGGAAGGCCT+CGG - chr3_2:15059124-15059143 Msa0396530:intron 55.0%
! TCTTGCTCAGAGCATCCCCA+TGG - chr3_2:15056305-15056324 Msa0396530:intron 55.0%
CCTTACGACGCATGACCATG+GGG + chr3_2:15056323-15056342 None:intergenic 55.0%
AGCTGCACCACTACGTTCTG+TGG - chr3_2:15056452-15056471 Msa0396530:intron 55.0%
GCTGCACCACTACGTTCTGT+GGG - chr3_2:15056453-15056472 Msa0396530:intron 55.0%
CTGCACCACTACGTTCTGTG+GGG - chr3_2:15056454-15056473 Msa0396530:intron 55.0%
GGGGTTGAAGATCAGTGACG+CGG - chr3_2:15056473-15056492 Msa0396530:intron 55.0%
TGATAGAGAGCAAGGTGGGC+GGG - chr3_2:15056506-15056525 Msa0396530:CDS 55.0%
GCAAGGTGGGCGGGAAAATT+TGG - chr3_2:15056515-15056534 Msa0396530:CDS 55.0%
AGGTGGGCGGGAAAATTTGG+AGG - chr3_2:15056518-15056537 Msa0396530:CDS 55.0%
GAAGGTTGCAGCTGTGGCAA+AGG - chr3_2:15056662-15056681 Msa0396530:intron 55.0%
TCTGGTCCTGGAATCGTGGA+TGG - chr3_2:15057791-15057810 Msa0396530:intron 55.0%
CACGAGGCAAACCCTGAGTA+TGG + chr3_2:15057921-15057940 None:intergenic 55.0%
CATACTCAGGGTTTGCCTCG+TGG - chr3_2:15057919-15057938 Msa0396530:CDS 55.0%
TCAGGGTTTGCCTCGTGGTA+GGG - chr3_2:15057924-15057943 Msa0396530:CDS 55.0%
AGCAATAGTCCCCTACCACG+AGG + chr3_2:15057937-15057956 None:intergenic 55.0%
TTCAGCCGGTAACCTTGCCA+AGG - chr3_2:15057972-15057991 Msa0396530:CDS 55.0%
TCAGCCGGTAACCTTGCCAA+GGG - chr3_2:15057973-15057992 Msa0396530:CDS 55.0%
GAAGGATTTATGGGTGCCCC+TGG + chr3_2:15058184-15058203 None:intergenic 55.0%
! CAAATGGTGACTGGTGGCGA+TGG - chr3_2:15058229-15058248 Msa0396530:CDS 55.0%
! GTGACTGGTGGCGATGGTTT+AGG - chr3_2:15058235-15058254 Msa0396530:CDS 55.0%
TTCCAGGTCGTCCACGATAG+AGG - chr3_2:15058920-15058939 Msa0396530:intron 55.0%
TTCCTCTATCGTGGACGACC+TGG + chr3_2:15058925-15058944 None:intergenic 55.0%
CGTTGGACGTGGCATCATCA+AGG - chr3_2:15058958-15058977 Msa0396530:intron 55.0%
CAAGGCAGCAAATCCTGCTG+AGG - chr3_2:15058976-15058995 Msa0396530:intron 55.0%
TGTAACCCAGAGGAAGGCCT+CGG - chr3_2:15059124-15059143 Msa0396530:intron 55.0%
CCCCATGGTCATGCGTCGTA+AGG - chr3_2:15056320-15056339 Msa0396530:intron 60.0%
CTCAGGGTTTGCCTCGTGGT+AGG - chr3_2:15057923-15057942 Msa0396530:CDS 60.0%
CAGGGTTTGCCTCGTGGTAG+GGG - chr3_2:15057925-15057944 Msa0396530:CDS 60.0%
GTAACCCAGAGGAAGGCCTC+GGG - chr3_2:15059125-15059144 Msa0396530:intron 60.0%
TGTACCCGAGGCCTTCCTCT+GGG + chr3_2:15059132-15059151 None:intergenic 60.0%
ATGTACCCGAGGCCTTCCTC+TGG + chr3_2:15059133-15059152 None:intergenic 60.0%
CCCCATGGTCATGCGTCGTA+AGG - chr3_2:15056320-15056339 Msa0396530:intron 60.0%
CTCAGGGTTTGCCTCGTGGT+AGG - chr3_2:15057923-15057942 Msa0396530:CDS 60.0%
CAGGGTTTGCCTCGTGGTAG+GGG - chr3_2:15057925-15057944 Msa0396530:CDS 60.0%
GTAACCCAGAGGAAGGCCTC+GGG - chr3_2:15059125-15059144 Msa0396530:intron 60.0%
TGTACCCGAGGCCTTCCTCT+GGG + chr3_2:15059132-15059151 None:intergenic 60.0%
ATGTACCCGAGGCCTTCCTC+TGG + chr3_2:15059133-15059152 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 15055409 15059352 15055409 ID=Msa0396530;Name=Msa0396530
chr3_2 mRNA 15055409 15059352 15055409 ID=Msa0396530-mRNA-1;Parent=Msa0396530;Name=Msa0396530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=110|0.85|0.75|1|0.85|0.75|8|298|455
chr3_2 exon 15055409 15055835 15055409 ID=Msa0396530-mRNA-1:exon:3358;Parent=Msa0396530-mRNA-1
chr3_2 exon 15056479 15056547 15056479 ID=Msa0396530-mRNA-1:exon:3357;Parent=Msa0396530-mRNA-1
chr3_2 exon 15056717 15056833 15056717 ID=Msa0396530-mRNA-1:exon:3356;Parent=Msa0396530-mRNA-1
chr3_2 exon 15056935 15057022 15056935 ID=Msa0396530-mRNA-1:exon:3355;Parent=Msa0396530-mRNA-1
chr3_2 exon 15057119 15057201 15057119 ID=Msa0396530-mRNA-1:exon:3354;Parent=Msa0396530-mRNA-1
chr3_2 exon 15057427 15057510 15057427 ID=Msa0396530-mRNA-1:exon:3353;Parent=Msa0396530-mRNA-1
chr3_2 exon 15057907 15058762 15057907 ID=Msa0396530-mRNA-1:exon:3352;Parent=Msa0396530-mRNA-1
chr3_2 exon 15059301 15059352 15059301 ID=Msa0396530-mRNA-1:exon:3351;Parent=Msa0396530-mRNA-1
chr3_2 five_prime_UTR 15059301 15059352 15059301 ID=Msa0396530-mRNA-1:five_prime_utr;Parent=Msa0396530-mRNA-1
chr3_2 five_prime_UTR 15058705 15058762 15058705 ID=Msa0396530-mRNA-1:five_prime_utr;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15057907 15058704 15057907 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15057427 15057510 15057427 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15057119 15057201 15057119 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15056935 15057022 15056935 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15056717 15056833 15056717 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15056479 15056547 15056479 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 CDS 15055707 15055835 15055707 ID=Msa0396530-mRNA-1:cds;Parent=Msa0396530-mRNA-1
chr3_2 three_prime_UTR 15055409 15055706 15055409 ID=Msa0396530-mRNA-1:three_prime_utr;Parent=Msa0396530-mRNA-1
Gene Sequence

>Msa0396530

ATGGCGTCATCATCATTGGTAGAATCTCTTGTTCTTCAACTCCATGAGATATCAGCTGTCAAATTCGGCAACTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATTGACCTCCGTCTCATCATATCTTATCCTTCTCTTCTCCAGCAAATCTCTCAGACCCTAATTTCCTCTGTCTCTTCCACCTCATTTGATCTTGTATGTGGTGTCCCTTACACTGCCTTACCCATTGCCACATGTGTCTCTCTTGCTCAGAGCATCCCCATGGTCATGCGTCGTAAGGAAGTCAAAGACTACGGCACTGCTAAAGCCATTGAAGGTGATTTCAAGCCTGGCCAAAGTTGCTTAATCATTGAGGATTTGGTTACCAGTGGAACATCAGTTTTGGAAACAGCTGCACCACTACGTTCTGTGGGGTTGAAGATCAGTGACGCGGTTGTCCTGATTGATAGAGAGCAAGGTGGGCGGGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTGAAATGGTGAAAATTTTGAGGGATCATGGAAGACTTGATGACGAGATGGTAGGGGTTGTTACAAAGTTCTTAGATGAGAATAGGAAGGTTGCAGCTGTGGCAAAGGTTGAGAAGCCAATAACCAAGGTCAAGTCTTTGTCATTTGGGGAAAGGGCGAATCTGTCCAAGAATCCAACAGGAAAGAAGTTATTTGAGATAATGGCTCAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCCGAGAAGGTTGGACCTGAGATATGCTTGCTGAAGACTCATGTGGATATTTTGCCAGATTTTACTCCTGATTTTGGCTCTAAGCTTCTCTCGATTGCAGAGAAACATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTAACCATGCAATATGCAGGAGGGATCTTTCACATATTAGATTGGGCTCACATAGTAAATGCTCATATAATCTCTGGTCCTGGAATCGTGGATGGACTAAAATTGAAGGGTTTGCCTCGTGGTAGGGGACTATTGCTGCTTGCTGAAATGAGTTCAGCCGGTAACCTTGCCAAGGGAGATTATACTGCTGCTGCATTGAAAATTGCTGAGGAACATTCCGACTTTGCAACTCCTGGAGTTCAAATGGTGACTGGTGGCGATGGTTTAGGGCAGCAATATAACACTCCATATTCTGTCGTCCACGATAGAGGAAGTGACATTATCATCGTTGGACGTGGCATCATCAAGGCAGCAAATCCTGCTGAGGCAGCTCATGAATACCGTGTCCAAGGATGGAATGCATATTTGGCCAAATCTGCTTGA
Protein sequence

>Msa0396530

MASSSLVESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLQQISQTLISSVSSTSFDLVCGVPYTALPIATCVSLAQSIPMVMRRKEVKDYGTAKAIEGDFKPGQSCLIIEDLVTSGTSVLETAAPLRSVGLKISDAVVLIDREQGGRENLEENGIKLHAIIKLTEMVKILRDHGRLDDEMVGVVTKFLDENRKVAAVAKVEKPITKVKSLSFGERANLSKNPTGKKLFEIMAQKESNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYAGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTAAALKIAEEHSDFATPGVQMVTGGDGLGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRVQGWNAYLAKSA*