Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491550 | KEH33050.1 | 99.163 | 478 | 4 | 0 | 1 | 478 | 21 | 498 | 0.0 | 966 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491550 | sp|Q42586|UMPS_ARATH | 77.263 | 475 | 106 | 2 | 5 | 478 | 2 | 475 | 0.0 | 758 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491550 | G7IYW1 | 99.163 | 478 | 4 | 0 | 1 | 478 | 1 | 478 | 0.0 | 966 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0396530 | Msa0491550 | 0.803565 | 3.280892e-49 | -8.615850e-47 |
| Msa0491550 | Msa1236150 | 0.841730 | 3.979153e-58 | -8.615850e-47 |
| Msa0491550 | Msa1393850 | 0.839203 | 1.823852e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491550 | MtrunA17_Chr3g0083561 | 99.163 | 478 | 4 | 0 | 1 | 478 | 1 | 478 | 0.0 | 966 |
| Msa0491550 | MtrunA17_Chr1g0156541 | 98.326 | 478 | 8 | 0 | 1 | 478 | 1 | 478 | 0.0 | 959 |
| Msa0491550 | MtrunA17_Chr8g0352721 | 84.468 | 470 | 70 | 1 | 7 | 476 | 1 | 467 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491550 | AT3G54470.1 | 77.263 | 475 | 106 | 2 | 5 | 478 | 2 | 475 | 0.0 | 758 |
Find 162 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTCCTGTTGGATTCT+TGG | 0.162358 | 3_4:-14297066 | None:intergenic |
| TGGAAGAGACAGAGGAAATT+AGG | 0.175139 | 3_4:-14296545 | None:intergenic |
| GCAAGGTGGGCGGGAAAATT+TGG | 0.209823 | 3_4:+14296839 | Msa0491550:CDS |
| GAACATTCCGACTTTGTAAT+TGG | 0.222966 | 3_4:+14298332 | Msa0491550:CDS |
| TTGCTTAATCATTGAGGATT+TGG | 0.242028 | 3_4:+14296725 | Msa0491550:CDS |
| CATAAATCCTTCTTTCATTC+AGG | 0.244652 | 3_4:+14298394 | Msa0491550:CDS |
| GCATTTGTTTCATCAACTTT+AGG | 0.255737 | 3_4:-14299453 | None:intergenic |
| GTGACTGGTGGCGATGGTTT+AGG | 0.260282 | 3_4:+14298437 | Msa0491550:CDS |
| CTGAATGAAAGAAGGATTTA+TGG | 0.267181 | 3_4:-14298393 | None:intergenic |
| CCAAGGATGGAATGCATATT+TGG | 0.288220 | 3_4:+14299217 | Msa0491550:CDS |
| AAAGAAGTTATTTGAGATAA+TGG | 0.294923 | 3_4:+14297082 | Msa0491550:CDS |
| CCAAATATGCATTCCATCCT+TGG | 0.307382 | 3_4:-14299217 | None:intergenic |
| ATCTGCATTTGAAGAATAAA+AGG | 0.312439 | 3_4:+14299255 | Msa0491550:three_prime_UTR |
| ATGCAGATCTCAAGCAGATT+TGG | 0.330274 | 3_4:-14299240 | None:intergenic |
| ATCTCCCTTGGCAAGGTTAC+CGG | 0.335912 | 3_4:-14298279 | None:intergenic |
| TACCAGTGGAACATCAGTTT+TGG | 0.340084 | 3_4:+14296749 | Msa0491550:CDS |
| TCTTTCATTCAGGCAACTCC+TGG | 0.349446 | 3_4:+14298404 | Msa0491550:CDS |
| TGACTGGTGGCGATGGTTTA+GGG | 0.363262 | 3_4:+14298438 | Msa0491550:CDS |
| TTAGGGTCTGAGAGATTTGC+TGG | 0.363600 | 3_4:-14296527 | None:intergenic |
| CAAAGTTCTTAGATGAGAAT+AGG | 0.374280 | 3_4:+14296964 | Msa0491550:CDS |
| GGCAACTTCAAGCTCAAATC+TGG | 0.374538 | 3_4:+14296447 | Msa0491550:CDS |
| CCTCAATGATTAAGCAACTT+TGG | 0.383142 | 3_4:-14296719 | None:intergenic |
| GGAAGAGACAGAGGAAATTA+GGG | 0.389314 | 3_4:-14296544 | None:intergenic |
| GAATATTATTTGTGAGGAAA+TGG | 0.389727 | 3_4:+14296362 | Msa0491550:exon |
| GGATCTTTCACATATTAGAT+TGG | 0.390057 | 3_4:+14298043 | Msa0491550:CDS |
| AGCTGCGGCGGCGCAGAGAA+AGG | 0.392849 | 3_4:-14294646 | None:intergenic |
| GAGAGAGAGGTACCTCGGTT+GGG | 0.393655 | 3_4:-14294678 | None:intergenic |
| AATTATTAAATTGACTGAAA+TGG | 0.395052 | 3_4:+14296887 | Msa0491550:CDS |
| ACATAACTTCTTAATCTTTG+AGG | 0.401323 | 3_4:+14297873 | Msa0491550:CDS |
| GAGATATCAGCTGTCAAATT+CGG | 0.409617 | 3_4:+14296426 | Msa0491550:CDS |
| ATGTACCCGAGGCCTTCCTC+TGG | 0.411635 | 3_4:-14299329 | None:intergenic |
| TCAAATAACTTCTTTCCTGT+TGG | 0.412197 | 3_4:-14297074 | None:intergenic |
| GCTGCGGCGGCGCAGAGAAA+GGG | 0.412930 | 3_4:-14294645 | None:intergenic |
| TTTAGTCCATCCACGATTCC+AGG | 0.414929 | 3_4:-14298099 | None:intergenic |
| GGTGCCCCTGGCCATGATGC+TGG | 0.418736 | 3_4:-14298371 | None:intergenic |
| GATCTTTCACATATTAGATT+GGG | 0.421238 | 3_4:+14298044 | Msa0491550:CDS |
| AGGCTTGAAATCACCTTCAA+TGG | 0.421566 | 3_4:-14296694 | None:intergenic |
| TCAGGGTTTGCCTCGTGGTA+GGG | 0.421932 | 3_4:+14298226 | Msa0491550:intron |
| ATAAGAATATCTCACCTTCT+CGG | 0.427341 | 3_4:-14297171 | None:intergenic |
| AGAAGCTTAGAGCCAAAATC+AGG | 0.428014 | 3_4:-14297610 | None:intergenic |
| CACCTTGCTCTCTATCAATC+AGG | 0.434163 | 3_4:-14296824 | None:intergenic |
| GTTATTTCTACAACAATCTC+TGG | 0.435105 | 3_4:+14296324 | Msa0491550:five_prime_UTR |
| ATTGAAGGTGATTTCAAGCC+TGG | 0.435970 | 3_4:+14296696 | Msa0491550:CDS |
| ATCTCTGGAACACACTCAAA+AGG | 0.436360 | 3_4:+14296339 | Msa0491550:five_prime_UTR |
| GACTTGATGACGAGATGGTA+GGG | 0.437781 | 3_4:+14296934 | Msa0491550:CDS |
| GAAGGAGAGTAATCTGTGTT+TGG | 0.444097 | 3_4:+14297109 | Msa0491550:CDS |
| GTCAATCCAGCATCATGGCC+AGG | 0.449072 | 3_4:+14298365 | Msa0491550:CDS |
| CCAAAATCAGGAGTAAAATC+TGG | 0.451598 | 3_4:-14297598 | None:intergenic |
| GCAATGGGTAAGGCAGTGTA+AGG | 0.460275 | 3_4:-14296594 | None:intergenic |
| TTCCAGGTCGTCCACGATAG+AGG | 0.461238 | 3_4:+14299119 | Msa0491550:intron |
| CCAAAGTTGCTTAATCATTG+AGG | 0.466579 | 3_4:+14296719 | Msa0491550:CDS |
| TCCTTACGACGCATGACCAT+GGG | 0.467155 | 3_4:-14296645 | None:intergenic |
| GGCAACTCCTGGAGTTCAAA+TGG | 0.472058 | 3_4:+14298415 | Msa0491550:CDS |
| ACCTCATTTGATCTTGTATG+TGG | 0.474446 | 3_4:+14296567 | Msa0491550:CDS |
| CGTGGATGGACTAAAATTGA+AGG | 0.484767 | 3_4:+14298107 | Msa0491550:CDS |
| GGGGCAAAACGGAGCTGCGG+CGG | 0.488115 | 3_4:-14294658 | None:intergenic |
| TTCCAAAACTGATGTTCCAC+TGG | 0.489744 | 3_4:-14296751 | None:intergenic |
| GTAAATGCTCACATAATCTC+TGG | 0.493470 | 3_4:+14298075 | Msa0491550:CDS |
| TATTCATGAGCTGCCTCAGC+AGG | 0.493515 | 3_4:-14299188 | None:intergenic |
| TGAATGAAAGAAGGATTTAT+GGG | 0.493705 | 3_4:-14298392 | None:intergenic |
| CTGTGTTTGGCTGCAGATGT+TGG | 0.494453 | 3_4:+14297122 | Msa0491550:CDS |
| CTGCGGCGGCGCAGAGAAAG+GGG | 0.495880 | 3_4:-14294644 | None:intergenic |
| GACACATGTGGCAATGGGTA+AGG | 0.497143 | 3_4:-14296604 | None:intergenic |
| GCTCACATAATCTCTGGTCC+TGG | 0.498743 | 3_4:+14298081 | Msa0491550:CDS |
| CGGGAAAATTTGGAGGAGAA+TGG | 0.500157 | 3_4:+14296849 | Msa0491550:CDS |
| AAGAGAGACACATGTGGCAA+TGG | 0.500349 | 3_4:-14296610 | None:intergenic |
| AACTGAGGTCGAGTGTTCAC+TGG | 0.503815 | 3_4:-14294612 | None:intergenic |
| TCAATCCAGCATCATGGCCA+GGG | 0.503889 | 3_4:+14298366 | Msa0491550:CDS |
| GGAAATGGCGTCATCATCAT+TGG | 0.504394 | 3_4:+14296377 | Msa0491550:exon |
| CCAGTCACCATTTGAACTCC+AGG | 0.507708 | 3_4:-14298422 | None:intergenic |
| TCTCTGGAACACACTCAAAA+GGG | 0.508398 | 3_4:+14296340 | Msa0491550:five_prime_UTR |
| GTCTTCAGCAAGCATATCTC+AGG | 0.509329 | 3_4:-14297559 | None:intergenic |
| CAGGGTTTGCCTCGTGGTAG+GGG | 0.510707 | 3_4:+14298227 | Msa0491550:intron |
| ACAAATGCAAGCATTGTTTG+AGG | 0.511644 | 3_4:+14299468 | Msa0491550:three_prime_UTR |
| GTTAGTAACTTATATTGAAG+TGG | 0.513434 | 3_4:+14299376 | Msa0491550:three_prime_UTR |
| ACAGTAACCATGCAATATGC+AGG | 0.513518 | 3_4:+14297922 | Msa0491550:CDS |
| AGAGAGAGGTACCTCGGTTG+GGG | 0.514048 | 3_4:-14294677 | None:intergenic |
| AATCTGTCCAAGAATCCAAC+AGG | 0.514570 | 3_4:+14297059 | Msa0491550:CDS |
| ATGATTAAGCAACTTTGGCC+AGG | 0.515619 | 3_4:-14296714 | None:intergenic |
| TGTAACCCAGAGGAAGGCCT+CGG | 0.519321 | 3_4:+14299323 | Msa0491550:three_prime_UTR |
| AGAGAGACACATGTGGCAAT+GGG | 0.520298 | 3_4:-14296609 | None:intergenic |
| TGGCCATGATGCTGGATTGA+CGG | 0.520423 | 3_4:-14298363 | None:intergenic |
| AGCTGCACCACTACGTTCTG+TGG | 0.521478 | 3_4:+14296776 | Msa0491550:CDS |
| GACATTATCATCGTTGGACG+TGG | 0.523138 | 3_4:+14299146 | Msa0491550:CDS |
| TGATAGAGAGCAAGGTGGGC+GGG | 0.523188 | 3_4:+14296830 | Msa0491550:CDS |
| ATGAATACCGTGTCCAAGGA+TGG | 0.523839 | 3_4:+14299204 | Msa0491550:CDS |
| AGACGGAGGTCAATGTAGAT+TGG | 0.523857 | 3_4:-14296480 | None:intergenic |
| GAAGGATTTATGGGTGCCCC+TGG | 0.524315 | 3_4:-14298383 | None:intergenic |
| GGAAGTGACATTATCATCGT+TGG | 0.524402 | 3_4:+14299140 | Msa0491550:CDS |
| AGAGAGAGAGGTACCTCGGT+TGG | 0.525596 | 3_4:-14294679 | None:intergenic |
| GGCACTGCTAAAGCCATTGA+AGG | 0.527673 | 3_4:+14296681 | Msa0491550:CDS |
| CCCCATGGTCATGCGTCGTA+AGG | 0.529623 | 3_4:+14296644 | Msa0491550:CDS |
| AAGGATAAGATATGATGAGA+CGG | 0.530450 | 3_4:-14296497 | None:intergenic |
| ATTTGAGATAATGGCTCAGA+AGG | 0.531327 | 3_4:+14297091 | Msa0491550:CDS |
| ATTATACTTCTGAAATCAAG+TGG | 0.531448 | 3_4:-14299538 | None:intergenic |
| TCTGGTCCTGGAATCGTGGA+TGG | 0.532929 | 3_4:+14298093 | Msa0491550:CDS |
| CTCAGGGTTTGCCTCGTGGT+AGG | 0.534371 | 3_4:+14298225 | Msa0491550:intron |
| TTCCTTACGACGCATGACCA+TGG | 0.546727 | 3_4:-14296646 | None:intergenic |
| ATTTGACAGCTGATATCTCA+TGG | 0.551164 | 3_4:-14296422 | None:intergenic |
| GATCGTAAATTTGCTGACAT+TGG | 0.551409 | 3_4:+14297895 | Msa0491550:CDS |
| CTTGCTGAAATGAGTTCAGC+CGG | 0.554751 | 3_4:+14298260 | Msa0491550:CDS |
| GAGATTTGCTGGAGAAGAGA+AGG | 0.555102 | 3_4:-14296516 | None:intergenic |
| AGACTTGATGACGAGATGGT+AGG | 0.561737 | 3_4:+14296933 | Msa0491550:CDS |
| GTACCTCGGTTGGGGCAAAA+CGG | 0.561914 | 3_4:-14294669 | None:intergenic |
| GAAGGTTGCAGCTGTGGCAA+AGG | 0.562858 | 3_4:+14296986 | Msa0491550:CDS |
| GAATAGGAAGGTTGCAGCTG+TGG | 0.569252 | 3_4:+14296980 | Msa0491550:CDS |
| AGCAGCAGTATAATCTCCCT+TGG | 0.569550 | 3_4:-14298291 | None:intergenic |
| ATTGAGGATTTGGTTACCAG+TGG | 0.571630 | 3_4:+14296735 | Msa0491550:CDS |
| GCTCATGAATACCGTGTCCA+AGG | 0.571738 | 3_4:+14299200 | Msa0491550:CDS |
| AAAAGGGAATATTATTTGTG+AGG | 0.573256 | 3_4:+14296356 | Msa0491550:five_prime_UTR |
| CCTGGAGTTCAAATGGTGAC+TGG | 0.574925 | 3_4:+14298422 | Msa0491550:CDS |
| GTAACCCAGAGGAAGGCCTC+GGG | 0.575667 | 3_4:+14299324 | Msa0491550:three_prime_UTR |
| CGTTGGACGTGGCATCATCA+AGG | 0.576271 | 3_4:+14299157 | Msa0491550:CDS |
| GCTGCACCACTACGTTCTGT+GGG | 0.576410 | 3_4:+14296777 | Msa0491550:CDS |
| TATGAAGCCAATTACAAAGT+CGG | 0.577391 | 3_4:-14298339 | None:intergenic |
| TATCCGTCAATCCAGCATCA+TGG | 0.578292 | 3_4:+14298360 | Msa0491550:CDS |
| CAAATGGTGACTGGTGGCGA+TGG | 0.583195 | 3_4:+14298431 | Msa0491550:CDS |
| GGAGTTGCCTGAATGAAAGA+AGG | 0.584092 | 3_4:-14298401 | None:intergenic |
| AATCTCTGGTCCTGGAATCG+TGG | 0.585281 | 3_4:+14298089 | Msa0491550:CDS |
| TTCAGCCGGTAACCTTGCCA+AGG | 0.587283 | 3_4:+14298274 | Msa0491550:CDS |
| GTTCTTAGATGAGAATAGGA+AGG | 0.589757 | 3_4:+14296968 | Msa0491550:CDS |
| TGTACCCGAGGCCTTCCTCT+GGG | 0.595293 | 3_4:-14299328 | None:intergenic |
| TCTTGCTCAGAGCATCCCCA+TGG | 0.599726 | 3_4:+14296629 | Msa0491550:CDS |
| TGGAAGACTTGATGACGAGA+TGG | 0.604205 | 3_4:+14296929 | Msa0491550:CDS |
| ACTTGATGACGAGATGGTAG+GGG | 0.608317 | 3_4:+14296935 | Msa0491550:CDS |
| TAATGTCACTTCCTCTATCG+TGG | 0.612294 | 3_4:-14299130 | None:intergenic |
| GTCCTGATTGATAGAGAGCA+AGG | 0.612462 | 3_4:+14296822 | Msa0491550:CDS |
| ACTATACCCTGCATATTGCA+TGG | 0.614445 | 3_4:-14297929 | None:intergenic |
| ATTGCTTGAAATTGCCGAGA+AGG | 0.616911 | 3_4:+14297157 | Msa0491550:CDS |
| CGTAAGGAAGTCAAAGACTA+CGG | 0.621272 | 3_4:+14296660 | Msa0491550:CDS |
| CAGTATAATCTCCCTTGGCA+AGG | 0.623016 | 3_4:-14298286 | None:intergenic |
| AGGTGGGCGGGAAAATTTGG+AGG | 0.623527 | 3_4:+14296842 | Msa0491550:CDS |
| ACCACATACAAGATCAAATG+AGG | 0.625670 | 3_4:-14296568 | None:intergenic |
| GTTGGGGCAAAACGGAGCTG+CGG | 0.634927 | 3_4:-14294661 | None:intergenic |
| ATGCTTGCTGAAGACTCATG+TGG | 0.637264 | 3_4:+14297567 | Msa0491550:CDS |
| CAATCCAGCATCATGGCCAG+GGG | 0.638220 | 3_4:+14298367 | Msa0491550:CDS |
| TTGATAGAGAGCAAGGTGGG+CGG | 0.643970 | 3_4:+14296829 | Msa0491550:CDS |
| CAAGGCAGCAAATCCTGCTG+AGG | 0.645766 | 3_4:+14299175 | Msa0491550:CDS |
| AAATGAGGTGGAAGAGACAG+AGG | 0.646361 | 3_4:-14296553 | None:intergenic |
| TGATTGATAGAGAGCAAGGT+GGG | 0.648024 | 3_4:+14296826 | Msa0491550:CDS |
| TGCGGCGGCGCAGAGAAAGG+GGG | 0.648845 | 3_4:-14294643 | None:intergenic |
| ACATACAAGATCAAATGAGG+TGG | 0.650465 | 3_4:-14296565 | None:intergenic |
| GAGGTCAATGTAGATTGGTG+AGG | 0.651318 | 3_4:-14296475 | None:intergenic |
| TGCTGCATTGAAAATTGCTG+AGG | 0.652056 | 3_4:+14298310 | Msa0491550:CDS |
| CAGTAACCATGCAATATGCA+GGG | 0.653666 | 3_4:+14297923 | Msa0491550:CDS |
| TTTCACTGTAACCCAGAGGA+AGG | 0.654967 | 3_4:+14299317 | Msa0491550:three_prime_UTR |
| ATGCATTCCATCCTTGGACA+CGG | 0.656504 | 3_4:-14299211 | None:intergenic |
| GGTTGAGAAGCCAATAACCA+AGG | 0.658377 | 3_4:+14297007 | Msa0491550:CDS |
| CATACTCAGGGTTTGCCTCG+TGG | 0.665328 | 3_4:+14298221 | Msa0491550:intron |
| TCAGCCGGTAACCTTGCCAA+GGG | 0.668243 | 3_4:+14298275 | Msa0491550:CDS |
| TCAACATTATAATGTACCCG+AGG | 0.672281 | 3_4:-14299340 | None:intergenic |
| CAATGGGTAAGGCAGTGTAA+GGG | 0.675950 | 3_4:-14296593 | None:intergenic |
| CCTTACGACGCATGACCATG+GGG | 0.681351 | 3_4:-14296644 | None:intergenic |
| GGAGTTCAAATGGTGACTGG+TGG | 0.701669 | 3_4:+14298425 | Msa0491550:CDS |
| GATAAGATATGATGAGACGG+AGG | 0.705591 | 3_4:-14296494 | None:intergenic |
| TTCAACCCCACAGAACGTAG+TGG | 0.709421 | 3_4:-14296783 | None:intergenic |
| CTGCACCACTACGTTCTGTG+GGG | 0.713121 | 3_4:+14296778 | Msa0491550:CDS |
| AGCAATAGTCCCCTACCACG+AGG | 0.719710 | 3_4:-14298236 | None:intergenic |
| CTAATTTCACTGTAACCCAG+AGG | 0.724449 | 3_4:+14299313 | Msa0491550:three_prime_UTR |
| CTGATTGATAGAGAGCAAGG+TGG | 0.725576 | 3_4:+14296825 | Msa0491550:CDS |
| CTGAGCAAGAGAGACACATG+TGG | 0.738423 | 3_4:-14296616 | None:intergenic |
| GGGGTTGAAGATCAGTGACG+CGG | 0.777219 | 3_4:+14296797 | Msa0491550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAATAAATATTATAA+TGG | - | chr3_4:14298152-14298171 | None:intergenic | 0.0% |
| !!! | CATTTTTCTTATAATATTAT+CGG | + | chr3_4:14294891-14294910 | Msa0491550:intron | 10.0% |
| !!! | TGTTTTTTTATAAAAAAGAA+AGG | + | chr3_4:14299508-14299527 | Msa0491550:three_prime_UTR | 10.0% |
| !!! | AGAATATTTAAAACTTGTTT+TGG | + | chr3_4:14295008-14295027 | Msa0491550:intron | 15.0% |
| !! | AATATTGTTTCAGATAATTA+TGG | + | chr3_4:14295579-14295598 | Msa0491550:intron | 15.0% |
| !!! | TGTTTTTAAAATTTGTATTG+TGG | + | chr3_4:14295942-14295961 | Msa0491550:intron | 15.0% |
| !! | TAAAGTATAATAACAAAAAG+TGG | - | chr3_4:14296009-14296028 | None:intergenic | 15.0% |
| !!! | TTGTTATTATACTTTATGAA+TGG | + | chr3_4:14296013-14296032 | Msa0491550:intron | 15.0% |
| !!! | TTAAAATTTTAAGCACTTAA+GGG | - | chr3_4:14296215-14296234 | None:intergenic | 15.0% |
| !! | AATTATTAAATTGACTGAAA+TGG | + | chr3_4:14296887-14296906 | Msa0491550:CDS | 15.0% |
| !! | GAAAAAATTAGACAAATAAT+TGG | - | chr3_4:14297527-14297546 | None:intergenic | 15.0% |
| !! | TTATAAAAAAACAAAATGAC+AGG | - | chr3_4:14299501-14299520 | None:intergenic | 15.0% |
| !! | AAAAATCACACAAAAATGTA+TGG | - | chr3_4:14295067-14295086 | None:intergenic | 20.0% |
| !! | TGATATTCGATAATTATGTA+TGG | + | chr3_4:14295182-14295201 | Msa0491550:intron | 20.0% |
| !!! | TATCTATTTTGTTTAGCTTT+TGG | - | chr3_4:14295356-14295375 | None:intergenic | 20.0% |
| !!! | AAAAATCGGTTTTTTTAACA+TGG | + | chr3_4:14295391-14295410 | Msa0491550:intron | 20.0% |
| !! | ATCAATTATCTATAGTACAA+TGG | - | chr3_4:14295611-14295630 | None:intergenic | 20.0% |
| !!! | TTAGACTTTTTCGAAATTTT+AGG | + | chr3_4:14295795-14295814 | Msa0491550:intron | 20.0% |
| !!! | ATTTTAAATTGCAATTGTGT+CGG | + | chr3_4:14296046-14296065 | Msa0491550:intron | 20.0% |
| !!! | TAAAATTTTAAGCACTTAAG+GGG | - | chr3_4:14296214-14296233 | None:intergenic | 20.0% |
| !!! | CTTAAAATTTTAAGCACTTA+AGG | - | chr3_4:14296216-14296235 | None:intergenic | 20.0% |
| !!! | AAAGAAGTTATTTGAGATAA+TGG | + | chr3_4:14297082-14297101 | Msa0491550:CDS | 20.0% |
| !! | TCACAATATTATGTACTAAA+TGG | - | chr3_4:14297415-14297434 | None:intergenic | 20.0% |
| !! | AATTAGACAAATAATTGGTA+TGG | - | chr3_4:14297522-14297541 | None:intergenic | 20.0% |
| !! | GACTAATTGTCAATAATATT+AGG | - | chr3_4:14297687-14297706 | None:intergenic | 20.0% |
| !! | AAAATAGAACAATGTCATAT+TGG | - | chr3_4:14298010-14298029 | None:intergenic | 20.0% |
| !!! | TTCTATTTTAATATCTACAG+AGG | + | chr3_4:14298021-14298040 | Msa0491550:intron | 20.0% |
| !!! | TCTATTTTAATATCTACAGA+GGG | + | chr3_4:14298022-14298041 | Msa0491550:intron | 20.0% |
| !! | ACAAATGAGTAAAAGATTTA+TGG | - | chr3_4:14298506-14298525 | None:intergenic | 20.0% |
| !!! | AAATCTTTTACTCATTTGTT+TGG | + | chr3_4:14298507-14298526 | Msa0491550:intron | 20.0% |
| !!! | AATCTTTTACTCATTTGTTT+GGG | + | chr3_4:14298508-14298527 | Msa0491550:intron | 20.0% |
| !! | CATATATATATATCACCATT+AGG | + | chr3_4:14298726-14298745 | Msa0491550:intron | 20.0% |
| !!! | AATAGTCTTGATACTTAAAA+AGG | - | chr3_4:14298824-14298843 | None:intergenic | 20.0% |
| !!! | CAAGACTATTTATTTTTCTT+TGG | + | chr3_4:14298834-14298853 | Msa0491550:intron | 20.0% |
| ! | TTTAAGCGAAAAGTTTCAAA+TGG | - | chr3_4:14294775-14294794 | None:intergenic | 25.0% |
| !! | AAAGTGATTTTGTTACTGTT+AGG | + | chr3_4:14295109-14295128 | Msa0491550:intron | 25.0% |
| ! | ATTCGATAATTATGTATGGA+TGG | + | chr3_4:14295186-14295205 | Msa0491550:intron | 25.0% |
| ! | TCTCACTCAAAAATTGATTA+AGG | - | chr3_4:14295223-14295242 | None:intergenic | 25.0% |
| ! | TTCGTTTGCAACATAAAAAT+CGG | + | chr3_4:14295377-14295396 | Msa0491550:intron | 25.0% |
| !! | TTTTGTAATCGTAAACAAAC+AGG | + | chr3_4:14295466-14295485 | Msa0491550:intron | 25.0% |
| ! | AATGAGAATATCTCAAACAA+TGG | - | chr3_4:14295657-14295676 | None:intergenic | 25.0% |
| !! | GAAATGCAAATATTTCAAGT+TGG | - | chr3_4:14295684-14295703 | None:intergenic | 25.0% |
| !!! | TGAGATAGAACAGATTTTTT+TGG | + | chr3_4:14295850-14295869 | Msa0491550:intron | 25.0% |
| !!! | GAGATAGAACAGATTTTTTT+GGG | + | chr3_4:14295851-14295870 | Msa0491550:intron | 25.0% |
| ! | AAAATTTGTATTGTGGTTTG+TGG | + | chr3_4:14295949-14295968 | Msa0491550:intron | 25.0% |
| ! | TTATACTTTATGAATGGTGT+AGG | + | chr3_4:14296019-14296038 | Msa0491550:intron | 25.0% |
| !! | TTTTAAATTGCAATTGTGTC+GGG | + | chr3_4:14296047-14296066 | Msa0491550:intron | 25.0% |
| ! | ACTGAAATTACAGAAAATTG+AGG | + | chr3_4:14296073-14296092 | Msa0491550:intron | 25.0% |
| !! | GTAATTTAAAATCATGTTGC+AGG | + | chr3_4:14296123-14296142 | Msa0491550:intron | 25.0% |
| ! | TATGATATCATCTATGATGT+GGG | + | chr3_4:14296159-14296178 | Msa0491550:intron | 25.0% |
| ! | AAAAGGGAATATTATTTGTG+AGG | + | chr3_4:14296356-14296375 | Msa0491550:five_prime_UTR | 25.0% |
| ! | GAATATTATTTGTGAGGAAA+TGG | + | chr3_4:14296362-14296381 | Msa0491550:exon | 25.0% |
| !! | TGAAATGGTGAAAATTTTGA+GGG | + | chr3_4:14296902-14296921 | Msa0491550:CDS | 25.0% |
| !!! | TTTGTCTAATTTTTTCTGAC+AGG | + | chr3_4:14297531-14297550 | Msa0491550:intron | 25.0% |
| ! | GTCAATAATATTAGGATGAA+AGG | - | chr3_4:14297679-14297698 | None:intergenic | 25.0% |
| ! | TTCAACTTTCAATAAATGCT+AGG | - | chr3_4:14297723-14297742 | None:intergenic | 25.0% |
| ! | ACATAACTTCTTAATCTTTG+AGG | + | chr3_4:14297873-14297892 | Msa0491550:CDS | 25.0% |
| ! | GATCTTTCACATATTAGATT+GGG | + | chr3_4:14298044-14298063 | Msa0491550:CDS | 25.0% |
| ! | TGAATGAAAGAAGGATTTAT+GGG | - | chr3_4:14298395-14298414 | None:intergenic | 25.0% |
| ! | ATGCAAAAACTTACAGAATA+TGG | - | chr3_4:14298479-14298498 | None:intergenic | 25.0% |
| ! | ATAAGTATGATCAAGTAGTA+TGG | + | chr3_4:14298531-14298550 | Msa0491550:intron | 25.0% |
| !! | TAAGTGTTGTTAAGATATTC+TGG | + | chr3_4:14298686-14298705 | Msa0491550:intron | 25.0% |
| ! | ATATATATCACCATTAGGAT+AGG | + | chr3_4:14298731-14298750 | Msa0491550:intron | 25.0% |
| ! | CTAAACAGCAGAAATATAAT+AGG | - | chr3_4:14298861-14298880 | None:intergenic | 25.0% |
| ! | CTTATATTTCTCTTACATCT+TGG | + | chr3_4:14298938-14298957 | Msa0491550:intron | 25.0% |
| ! | ATTTCAACACAAAGTTTAAG+AGG | - | chr3_4:14298997-14299016 | None:intergenic | 25.0% |
| !! | TTAACAAAATGTTCTTTTCC+AGG | + | chr3_4:14299103-14299122 | Msa0491550:intron | 25.0% |
| ! | ATCTGCATTTGAAGAATAAA+AGG | + | chr3_4:14299255-14299274 | Msa0491550:three_prime_UTR | 25.0% |
| !!! | GAGTCAAAATTATGTTTTTG+CGG | + | chr3_4:14299280-14299299 | Msa0491550:three_prime_UTR | 25.0% |
| !!! | AGTCAAAATTATGTTTTTGC+GGG | + | chr3_4:14299281-14299300 | Msa0491550:three_prime_UTR | 25.0% |
| ! | GTTAGTAACTTATATTGAAG+TGG | + | chr3_4:14299376-14299395 | Msa0491550:three_prime_UTR | 25.0% |
| ! | TCAGAAAAAATTTGCTCTTC+AGG | - | chr3_4:14295492-14295511 | None:intergenic | 30.0% |
| ! | TTTTAGGCGAAGAACAAATT+TGG | + | chr3_4:14295811-14295830 | Msa0491550:intron | 30.0% |
| GTTCTATCTCATCTTATAAC+AGG | - | chr3_4:14295841-14295860 | None:intergenic | 30.0% | |
| !!! | ACAGATTTTTTTGGGTGAAA+TGG | + | chr3_4:14295859-14295878 | Msa0491550:intron | 30.0% |
| !!! | CAGATTTTTTTGGGTGAAAT+GGG | + | chr3_4:14295860-14295879 | Msa0491550:intron | 30.0% |
| !!! | AGATTTTTTTGGGTGAAATG+GGG | + | chr3_4:14295861-14295880 | Msa0491550:intron | 30.0% |
| !! | ATGTTTGTTAATGTTTTGCC+TGG | + | chr3_4:14295897-14295916 | Msa0491550:intron | 30.0% |
| TACTAAACCATATTTCAACC+AGG | - | chr3_4:14295918-14295937 | None:intergenic | 30.0% | |
| TTTAAATTGCAATTGTGTCG+GGG | + | chr3_4:14296048-14296067 | Msa0491550:intron | 30.0% | |
| CTATGATATCATCTATGATG+TGG | + | chr3_4:14296158-14296177 | Msa0491550:intron | 30.0% | |
| GCATGAATGTAAAAATGCAA+AGG | - | chr3_4:14296255-14296274 | None:intergenic | 30.0% | |
| !! | GTTATTTCTACAACAATCTC+TGG | + | chr3_4:14296324-14296343 | Msa0491550:five_prime_UTR | 30.0% |
| AAGGATAAGATATGATGAGA+CGG | - | chr3_4:14296500-14296519 | None:intergenic | 30.0% | |
| TTGCTTAATCATTGAGGATT+TGG | + | chr3_4:14296725-14296744 | Msa0491550:CDS | 30.0% | |
| ! | CTGAAATGGTGAAAATTTTG+AGG | + | chr3_4:14296901-14296920 | Msa0491550:CDS | 30.0% |
| CAAAGTTCTTAGATGAGAAT+AGG | + | chr3_4:14296964-14296983 | Msa0491550:CDS | 30.0% | |
| AAAAACTTGACCTTGGTTAT+TGG | - | chr3_4:14297020-14297039 | None:intergenic | 30.0% | |
| AAATGACAAAAACTTGACCT+TGG | - | chr3_4:14297027-14297046 | None:intergenic | 30.0% | |
| ! | AAGGTCAAGTTTTTGTCATT+TGG | + | chr3_4:14297026-14297045 | Msa0491550:CDS | 30.0% |
| !! | AGGTCAAGTTTTTGTCATTT+GGG | + | chr3_4:14297027-14297046 | Msa0491550:CDS | 30.0% |
| TCAAATAACTTCTTTCCTGT+TGG | - | chr3_4:14297077-14297096 | None:intergenic | 30.0% | |
| ATAAGAATATCTCACCTTCT+CGG | - | chr3_4:14297174-14297193 | None:intergenic | 30.0% | |
| ! | AAGAGAGAAAACAACTTTTG+TGG | - | chr3_4:14297249-14297268 | None:intergenic | 30.0% |
| ! | ATACATGACTCTTTCAAGTA+TGG | - | chr3_4:14297272-14297291 | None:intergenic | 30.0% |
| ATCATCAACTAGATTGTAAG+TGG | + | chr3_4:14297305-14297324 | Msa0491550:intron | 30.0% | |
| AGCTTCTATTTAACAACACT+AGG | - | chr3_4:14297339-14297358 | None:intergenic | 30.0% | |
| !!! | TCTAATTTTTTCTGACAGGT+TGG | + | chr3_4:14297535-14297554 | Msa0491550:intron | 30.0% |
| TATGTTTGTGTGAAGTTCTA+AGG | + | chr3_4:14297784-14297803 | Msa0491550:intron | 30.0% | |
| ! | TAAGGAATCTTTTACGTTTC+TGG | + | chr3_4:14297802-14297821 | Msa0491550:intron | 30.0% |
| GTTTCTCTGCAATCTTTAAT+AGG | - | chr3_4:14297855-14297874 | None:intergenic | 30.0% | |
| ATGAGGAATCTAGAAAGAAA+AGG | - | chr3_4:14297975-14297994 | None:intergenic | 30.0% | |
| GGATCTTTCACATATTAGAT+TGG | + | chr3_4:14298043-14298062 | Msa0491550:CDS | 30.0% | |
| TATGAAGCCAATTACAAAGT+CGG | - | chr3_4:14298342-14298361 | None:intergenic | 30.0% | |
| CTGAATGAAAGAAGGATTTA+TGG | - | chr3_4:14298396-14298415 | None:intergenic | 30.0% | |
| CATAAATCCTTCTTTCATTC+AGG | + | chr3_4:14298394-14298413 | Msa0491550:CDS | 30.0% | |
| ! | CATTTTCAATGTTGATACAG+AGG | - | chr3_4:14298652-14298671 | None:intergenic | 30.0% |
| ! | TCTTTTCTTTCCTATCCTAA+TGG | - | chr3_4:14298744-14298763 | None:intergenic | 30.0% |
| AGAATAAATTCTTCGTTTGC+TGG | + | chr3_4:14298767-14298786 | Msa0491550:intron | 30.0% | |
| ! | CAAAACAAATTAGCTTCACA+AGG | - | chr3_4:14298797-14298816 | None:intergenic | 30.0% |
| CAAAGTTTAAGAGGTTGAAT+GGG | - | chr3_4:14298988-14299007 | None:intergenic | 30.0% | |
| ACAAAGTTTAAGAGGTTGAA+TGG | - | chr3_4:14298989-14299008 | None:intergenic | 30.0% | |
| GCATTTGTTTCATCAACTTT+AGG | - | chr3_4:14299456-14299475 | None:intergenic | 30.0% | |
| TTGTTACTGTTAGGTGTCTT+AGG | + | chr3_4:14295118-14295137 | Msa0491550:intron | 35.0% | |
| TGTTACTGTTAGGTGTCTTA+GGG | + | chr3_4:14295119-14295138 | Msa0491550:intron | 35.0% | |
| TCCATAGTTGTTGAATTGAG+TGG | + | chr3_4:14295251-14295270 | Msa0491550:intron | 35.0% | |
| CCATAGTTGTTGAATTGAGT+GGG | + | chr3_4:14295252-14295271 | Msa0491550:intron | 35.0% | |
| !! | ATCTCTGACGAGTTTGTTTT+TGG | + | chr3_4:14295517-14295536 | Msa0491550:intron | 35.0% |
| ATGTAGCAAGCAAGCATTTA+AGG | + | chr3_4:14295543-14295562 | Msa0491550:intron | 35.0% | |
| AAGCAATCTGCACAAACAAT+AGG | - | chr3_4:14295719-14295738 | None:intergenic | 35.0% | |
| ! | TGTTTTGCCTGGTTGAAATA+TGG | + | chr3_4:14295908-14295927 | Msa0491550:intron | 35.0% |
| TGAGGATGAATGCATCTATA+TGG | + | chr3_4:14296091-14296110 | Msa0491550:intron | 35.0% | |
| TAATGTGCACTGAATAACAC+AGG | + | chr3_4:14296302-14296321 | Msa0491550:intron | 35.0% | |
| ATTTGACAGCTGATATCTCA+TGG | - | chr3_4:14296425-14296444 | None:intergenic | 35.0% | |
| GAGATATCAGCTGTCAAATT+CGG | + | chr3_4:14296426-14296445 | Msa0491550:CDS | 35.0% | |
| ACATACAAGATCAAATGAGG+TGG | - | chr3_4:14296568-14296587 | None:intergenic | 35.0% | |
| ACCTCATTTGATCTTGTATG+TGG | + | chr3_4:14296567-14296586 | Msa0491550:CDS | 35.0% | |
| ACCACATACAAGATCAAATG+AGG | - | chr3_4:14296571-14296590 | None:intergenic | 35.0% | |
| CCTCAATGATTAAGCAACTT+TGG | - | chr3_4:14296722-14296741 | None:intergenic | 35.0% | |
| CCAAAGTTGCTTAATCATTG+AGG | + | chr3_4:14296719-14296738 | Msa0491550:CDS | 35.0% | |
| !! | GTGAAAATTTTGAGGGATCA+TGG | + | chr3_4:14296909-14296928 | Msa0491550:CDS | 35.0% |
| GTTCTTAGATGAGAATAGGA+AGG | + | chr3_4:14296968-14296987 | Msa0491550:CDS | 35.0% | |
| !! | GGTCAAGTTTTTGTCATTTG+GGG | + | chr3_4:14297028-14297047 | Msa0491550:CDS | 35.0% |
| !! | AGTTTTTGTCATTTGGGGAA+AGG | + | chr3_4:14297033-14297052 | Msa0491550:CDS | 35.0% |
| !! | GTTTTTGTCATTTGGGGAAA+GGG | + | chr3_4:14297034-14297053 | Msa0491550:CDS | 35.0% |
| ! | ATTTGAGATAATGGCTCAGA+AGG | + | chr3_4:14297091-14297110 | Msa0491550:CDS | 35.0% |
| ! | GAATTCCTCTTTTACATGAG+AGG | - | chr3_4:14297209-14297228 | None:intergenic | 35.0% |
| TGAAAGAGTCATGTATTCTC+TGG | + | chr3_4:14297276-14297295 | Msa0491550:intron | 35.0% | |
| ATCAACTAGATTGTAAGTGG+TGG | + | chr3_4:14297308-14297327 | Msa0491550:intron | 35.0% | |
| ATGTACTAAATGGCGTATCA+CGG | - | chr3_4:14297405-14297424 | None:intergenic | 35.0% | |
| CCAAAATCAGGAGTAAAATC+TGG | - | chr3_4:14297601-14297620 | None:intergenic | 35.0% | |
| ! | CCAGATTTTACTCCTGATTT+TGG | + | chr3_4:14297598-14297617 | Msa0491550:CDS | 35.0% |
| GGCAAAAACATGAACAGAAT+AGG | - | chr3_4:14297658-14297677 | None:intergenic | 35.0% | |
| !!! | CTTTTACGTTTCTGGTTTAG+TGG | + | chr3_4:14297810-14297829 | Msa0491550:intron | 35.0% |
| !! | GATCGTAAATTTGCTGACAT+TGG | + | chr3_4:14297895-14297914 | Msa0491550:CDS | 35.0% |
| AGATTCCTCATCTGTATCTA+AGG | + | chr3_4:14297984-14298003 | Msa0491550:intron | 35.0% | |
| GTAAATGCTCACATAATCTC+TGG | + | chr3_4:14298075-14298094 | Msa0491550:CDS | 35.0% | |
| ATGTTTCTTGAACCATACTC+AGG | + | chr3_4:14298208-14298227 | Msa0491550:intron | 35.0% | |
| TGTTTCTTGAACCATACTCA+GGG | + | chr3_4:14298209-14298228 | Msa0491550:intron | 35.0% | |
| GAACATTCCGACTTTGTAAT+TGG | + | chr3_4:14298332-14298351 | Msa0491550:CDS | 35.0% | |
| TAGACTGACAGTAACTCATT+TGG | + | chr3_4:14298563-14298582 | Msa0491550:intron | 35.0% | |
| AGTAACTCATTTGGACGAAA+AGG | + | chr3_4:14298572-14298591 | Msa0491550:intron | 35.0% | |
| GTAACTCATTTGGACGAAAA+GGG | + | chr3_4:14298573-14298592 | Msa0491550:intron | 35.0% | |
| TAACTCATTTGGACGAAAAG+GGG | + | chr3_4:14298574-14298593 | Msa0491550:intron | 35.0% | |
| TTAAGATATTCTGGTCCTTC+AGG | + | chr3_4:14298695-14298714 | Msa0491550:intron | 35.0% | |
| TAAGATATTCTGGTCCTTCA+GGG | + | chr3_4:14298696-14298715 | Msa0491550:intron | 35.0% | |
| ATATATGTATTAGCCCCTGA+AGG | - | chr3_4:14298713-14298732 | None:intergenic | 35.0% | |
| AACAATTCTATCACGAGCTT+TGG | + | chr3_4:14298899-14298918 | Msa0491550:intron | 35.0% | |
| TCTTGGTTGTGTTATAGAGA+TGG | + | chr3_4:14298955-14298974 | Msa0491550:intron | 35.0% | |
| TCAACATTATAATGTACCCG+AGG | - | chr3_4:14299343-14299362 | None:intergenic | 35.0% | |
| ! | AAGTGGCTTTTTGATGTTCT+TGG | + | chr3_4:14299393-14299412 | Msa0491550:three_prime_UTR | 35.0% |
| ! | ACAAATGCAAGCATTGTTTG+AGG | + | chr3_4:14299468-14299487 | Msa0491550:three_prime_UTR | 35.0% |
| ACAGAGAGAAAGCAGAAACA+TGG | - | chr3_4:14295038-14295057 | None:intergenic | 40.0% | |
| CCCACTCAATTCAACAACTA+TGG | - | chr3_4:14295255-14295274 | None:intergenic | 40.0% | |
| TCTTTCAAACGTTGTGTGCT+TGG | - | chr3_4:14295293-14295312 | None:intergenic | 40.0% | |
| TATCTCGAGTTTCATCACTG+TGG | + | chr3_4:14295743-14295762 | Msa0491550:intron | 40.0% | |
| ATCTCGAGTTTCATCACTGT+GGG | + | chr3_4:14295744-14295763 | Msa0491550:intron | 40.0% | |
| TTCATCACTGTGGGTGTATT+TGG | + | chr3_4:14295753-14295772 | Msa0491550:intron | 40.0% | |
| GAATGCATCTATATGGTTGC+TGG | + | chr3_4:14296098-14296117 | Msa0491550:intron | 40.0% | |
| !! | ATCTCTGGAACACACTCAAA+AGG | + | chr3_4:14296339-14296358 | Msa0491550:five_prime_UTR | 40.0% |
| !! | TCTCTGGAACACACTCAAAA+GGG | + | chr3_4:14296340-14296359 | Msa0491550:five_prime_UTR | 40.0% |
| GATAAGATATGATGAGACGG+AGG | - | chr3_4:14296497-14296516 | None:intergenic | 40.0% | |
| GGAAGAGACAGAGGAAATTA+GGG | - | chr3_4:14296547-14296566 | None:intergenic | 40.0% | |
| TGGAAGAGACAGAGGAAATT+AGG | - | chr3_4:14296548-14296567 | None:intergenic | 40.0% | |
| CGTAAGGAAGTCAAAGACTA+CGG | + | chr3_4:14296660-14296679 | Msa0491550:CDS | 40.0% | |
| AGGCTTGAAATCACCTTCAA+TGG | - | chr3_4:14296697-14296716 | None:intergenic | 40.0% | |
| ATTGAAGGTGATTTCAAGCC+TGG | + | chr3_4:14296696-14296715 | Msa0491550:CDS | 40.0% | |
| ATGATTAAGCAACTTTGGCC+AGG | - | chr3_4:14296717-14296736 | None:intergenic | 40.0% | |
| ! | ATTGAGGATTTGGTTACCAG+TGG | + | chr3_4:14296735-14296754 | Msa0491550:CDS | 40.0% |
| ! | TACCAGTGGAACATCAGTTT+TGG | + | chr3_4:14296749-14296768 | Msa0491550:CDS | 40.0% |
| TTCCAAAACTGATGTTCCAC+TGG | - | chr3_4:14296754-14296773 | None:intergenic | 40.0% | |
| TGATTGATAGAGAGCAAGGT+GGG | + | chr3_4:14296826-14296845 | Msa0491550:CDS | 40.0% | |
| AATCTGTCCAAGAATCCAAC+AGG | + | chr3_4:14297059-14297078 | Msa0491550:CDS | 40.0% | |
| CTTCTTTCCTGTTGGATTCT+TGG | - | chr3_4:14297069-14297088 | None:intergenic | 40.0% | |
| GAAGGAGAGTAATCTGTGTT+TGG | + | chr3_4:14297109-14297128 | Msa0491550:CDS | 40.0% | |
| ATTGCTTGAAATTGCCGAGA+AGG | + | chr3_4:14297157-14297176 | Msa0491550:CDS | 40.0% | |
| TGAAGCCTCTCATGTAAAAG+AGG | + | chr3_4:14297201-14297220 | Msa0491550:intron | 40.0% | |
| CTAGATTGTAAGTGGTGGTT+TGG | + | chr3_4:14297313-14297332 | Msa0491550:intron | 40.0% | |
| TTGTGAAATAGCAGCTAGAG+TGG | + | chr3_4:14297429-14297448 | Msa0491550:intron | 40.0% | |
| AGAAGCTTAGAGCCAAAATC+AGG | - | chr3_4:14297613-14297632 | None:intergenic | 40.0% | |
| !!! | TTTTGGCTCTAAGCTTCTCT+CGG | + | chr3_4:14297615-14297634 | Msa0491550:CDS | 40.0% |
| ACAGTAACCATGCAATATGC+AGG | + | chr3_4:14297922-14297941 | Msa0491550:CDS | 40.0% | |
| CAGTAACCATGCAATATGCA+GGG | + | chr3_4:14297923-14297942 | Msa0491550:CDS | 40.0% | |
| ACTATACCCTGCATATTGCA+TGG | - | chr3_4:14297932-14297951 | None:intergenic | 40.0% | |
| !! | ATTGGCCTTAGATACAGATG+AGG | - | chr3_4:14297992-14298011 | None:intergenic | 40.0% |
| !! | CGTGGATGGACTAAAATTGA+AGG | + | chr3_4:14298107-14298126 | Msa0491550:CDS | 40.0% |
| TGCTGCATTGAAAATTGCTG+AGG | + | chr3_4:14298310-14298329 | Msa0491550:CDS | 40.0% | |
| CTGATCTTAAGATGGTACAG+TGG | - | chr3_4:14298612-14298631 | None:intergenic | 40.0% | |
| ACCATCTTAAGATCAGACAG+AGG | + | chr3_4:14298616-14298635 | Msa0491550:intron | 40.0% | |
| TTAAGATCAGACAGAGGCTT+AGG | + | chr3_4:14298622-14298641 | Msa0491550:intron | 40.0% | |
| AAGATATTCTGGTCCTTCAG+GGG | + | chr3_4:14298697-14298716 | Msa0491550:intron | 40.0% | |
| ! | TAATGTCACTTCCTCTATCG+TGG | - | chr3_4:14299133-14299152 | None:intergenic | 40.0% |
| GGAAGTGACATTATCATCGT+TGG | + | chr3_4:14299140-14299159 | Msa0491550:CDS | 40.0% | |
| CCAAATATGCATTCCATCCT+TGG | - | chr3_4:14299220-14299239 | None:intergenic | 40.0% | |
| CCAAGGATGGAATGCATATT+TGG | + | chr3_4:14299217-14299236 | Msa0491550:CDS | 40.0% | |
| ATGCAGATCTCAAGCAGATT+TGG | - | chr3_4:14299243-14299262 | None:intergenic | 40.0% | |
| CTAATTTCACTGTAACCCAG+AGG | + | chr3_4:14299313-14299332 | Msa0491550:three_prime_UTR | 40.0% | |
| ACTGTTAGGTGTCTTAGGGT+CGG | + | chr3_4:14295123-14295142 | Msa0491550:intron | 45.0% | |
| TCACTGTGGGTGTATTTGGA+AGG | + | chr3_4:14295757-14295776 | Msa0491550:intron | 45.0% | |
| GGAAATGGCGTCATCATCAT+TGG | + | chr3_4:14296377-14296396 | Msa0491550:exon | 45.0% | |
| GGCAACTTCAAGCTCAAATC+TGG | + | chr3_4:14296447-14296466 | Msa0491550:CDS | 45.0% | |
| GAGGTCAATGTAGATTGGTG+AGG | - | chr3_4:14296478-14296497 | None:intergenic | 45.0% | |
| AGACGGAGGTCAATGTAGAT+TGG | - | chr3_4:14296483-14296502 | None:intergenic | 45.0% | |
| !! | GAGATTTGCTGGAGAAGAGA+AGG | - | chr3_4:14296519-14296538 | None:intergenic | 45.0% |
| TTAGGGTCTGAGAGATTTGC+TGG | - | chr3_4:14296530-14296549 | None:intergenic | 45.0% | |
| AAATGAGGTGGAAGAGACAG+AGG | - | chr3_4:14296556-14296575 | None:intergenic | 45.0% | |
| CAATGGGTAAGGCAGTGTAA+GGG | - | chr3_4:14296596-14296615 | None:intergenic | 45.0% | |
| AGAGAGACACATGTGGCAAT+GGG | - | chr3_4:14296612-14296631 | None:intergenic | 45.0% | |
| AAGAGAGACACATGTGGCAA+TGG | - | chr3_4:14296613-14296632 | None:intergenic | 45.0% | |
| GTCCTGATTGATAGAGAGCA+AGG | + | chr3_4:14296822-14296841 | Msa0491550:CDS | 45.0% | |
| CACCTTGCTCTCTATCAATC+AGG | - | chr3_4:14296827-14296846 | None:intergenic | 45.0% | |
| CTGATTGATAGAGAGCAAGG+TGG | + | chr3_4:14296825-14296844 | Msa0491550:CDS | 45.0% | |
| CGGGAAAATTTGGAGGAGAA+TGG | + | chr3_4:14296849-14296868 | Msa0491550:CDS | 45.0% | |
| !! | TGGAAGACTTGATGACGAGA+TGG | + | chr3_4:14296929-14296948 | Msa0491550:CDS | 45.0% |
| !! | AGACTTGATGACGAGATGGT+AGG | + | chr3_4:14296933-14296952 | Msa0491550:CDS | 45.0% |
| !! | GACTTGATGACGAGATGGTA+GGG | + | chr3_4:14296934-14296953 | Msa0491550:CDS | 45.0% |
| !! | ACTTGATGACGAGATGGTAG+GGG | + | chr3_4:14296935-14296954 | Msa0491550:CDS | 45.0% |
| GGTTGAGAAGCCAATAACCA+AGG | + | chr3_4:14297007-14297026 | Msa0491550:CDS | 45.0% | |
| !! | GCTATAGCAGTGTTGCTTAG+CGG | + | chr3_4:14297453-14297472 | Msa0491550:intron | 45.0% |
| TTGCAGATCGCGGAAAATAG+CGG | - | chr3_4:14297491-14297510 | None:intergenic | 45.0% | |
| TTCCGCGATCTGCAATTGTT+TGG | + | chr3_4:14297496-14297515 | Msa0491550:intron | 45.0% | |
| GTCTTCAGCAAGCATATCTC+AGG | - | chr3_4:14297562-14297581 | None:intergenic | 45.0% | |
| ! | ATGCTTGCTGAAGACTCATG+TGG | + | chr3_4:14297567-14297586 | Msa0491550:CDS | 45.0% |
| TTTAGTCCATCCACGATTCC+AGG | - | chr3_4:14298102-14298121 | None:intergenic | 45.0% | |
| CTTGCTGAAATGAGTTCAGC+CGG | + | chr3_4:14298260-14298279 | Msa0491550:CDS | 45.0% | |
| CAGTATAATCTCCCTTGGCA+AGG | - | chr3_4:14298289-14298308 | None:intergenic | 45.0% | |
| AGCAGCAGTATAATCTCCCT+TGG | - | chr3_4:14298294-14298313 | None:intergenic | 45.0% | |
| TATCCGTCAATCCAGCATCA+TGG | + | chr3_4:14298360-14298379 | Msa0491550:CDS | 45.0% | |
| GGAGTTGCCTGAATGAAAGA+AGG | - | chr3_4:14298404-14298423 | None:intergenic | 45.0% | |
| TCTTTCATTCAGGCAACTCC+TGG | + | chr3_4:14298404-14298423 | Msa0491550:CDS | 45.0% | |
| GCCTCTGTCTGATCTTAAGA+TGG | - | chr3_4:14298620-14298639 | None:intergenic | 45.0% | |
| GACATTATCATCGTTGGACG+TGG | + | chr3_4:14299146-14299165 | Msa0491550:CDS | 45.0% | |
| ATGAATACCGTGTCCAAGGA+TGG | + | chr3_4:14299204-14299223 | Msa0491550:CDS | 45.0% | |
| ATGCATTCCATCCTTGGACA+CGG | - | chr3_4:14299214-14299233 | None:intergenic | 45.0% | |
| TTTCACTGTAACCCAGAGGA+AGG | + | chr3_4:14299317-14299336 | Msa0491550:three_prime_UTR | 45.0% | |
| AACTGAGGTCGAGTGTTCAC+TGG | - | chr3_4:14294615-14294634 | None:intergenic | 50.0% | |
| AAGGGGGTAGTGAGTAACTG+AGG | - | chr3_4:14294630-14294649 | None:intergenic | 50.0% | |
| !! | AGAGAGAGAGAGAGGTACCT+CGG | - | chr3_4:14294686-14294705 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:14294692-14294711 | None:intergenic | 50.0% | |
| TGTCTGAGTCTGTGCTTCGT+AGG | + | chr3_4:14294928-14294947 | Msa0491550:intron | 50.0% | |
| AGTCTGTGCTTCGTAGGATC+AGG | + | chr3_4:14294934-14294953 | Msa0491550:intron | 50.0% | |
| GGGTGAAATGGGGTAGTGTA+TGG | + | chr3_4:14295871-14295890 | Msa0491550:intron | 50.0% | |
| GCAATGGGTAAGGCAGTGTA+AGG | - | chr3_4:14296597-14296616 | None:intergenic | 50.0% | |
| GACACATGTGGCAATGGGTA+AGG | - | chr3_4:14296607-14296626 | None:intergenic | 50.0% | |
| CTGAGCAAGAGAGACACATG+TGG | - | chr3_4:14296619-14296638 | None:intergenic | 50.0% | |
| TCCTTACGACGCATGACCAT+GGG | - | chr3_4:14296648-14296667 | None:intergenic | 50.0% | |
| TTCCTTACGACGCATGACCA+TGG | - | chr3_4:14296649-14296668 | None:intergenic | 50.0% | |
| GGCACTGCTAAAGCCATTGA+AGG | + | chr3_4:14296681-14296700 | Msa0491550:CDS | 50.0% | |
| TTCAACCCCACAGAACGTAG+TGG | - | chr3_4:14296786-14296805 | None:intergenic | 50.0% | |
| TTGATAGAGAGCAAGGTGGG+CGG | + | chr3_4:14296829-14296848 | Msa0491550:CDS | 50.0% | |
| GAATAGGAAGGTTGCAGCTG+TGG | + | chr3_4:14296980-14296999 | Msa0491550:CDS | 50.0% | |
| CTGTGTTTGGCTGCAGATGT+TGG | + | chr3_4:14297122-14297141 | Msa0491550:CDS | 50.0% | |
| GGCGTATCACGGAACAATAG+TGG | - | chr3_4:14297394-14297413 | None:intergenic | 50.0% | |
| GGCCAAACAATTGCAGATCG+CGG | - | chr3_4:14297501-14297520 | None:intergenic | 50.0% | |
| GCTCACATAATCTCTGGTCC+TGG | + | chr3_4:14298081-14298100 | Msa0491550:CDS | 50.0% | |
| AATCTCTGGTCCTGGAATCG+TGG | + | chr3_4:14298089-14298108 | Msa0491550:CDS | 50.0% | |
| ATCTCCCTTGGCAAGGTTAC+CGG | - | chr3_4:14298282-14298301 | None:intergenic | 50.0% | |
| TGGCCATGATGCTGGATTGA+CGG | - | chr3_4:14298366-14298385 | None:intergenic | 50.0% | |
| TCAATCCAGCATCATGGCCA+GGG | + | chr3_4:14298366-14298385 | Msa0491550:CDS | 50.0% | |
| GGCAACTCCTGGAGTTCAAA+TGG | + | chr3_4:14298415-14298434 | Msa0491550:CDS | 50.0% | |
| CCAGTCACCATTTGAACTCC+AGG | - | chr3_4:14298425-14298444 | None:intergenic | 50.0% | |
| CCTGGAGTTCAAATGGTGAC+TGG | + | chr3_4:14298422-14298441 | Msa0491550:CDS | 50.0% | |
| GGAGTTCAAATGGTGACTGG+TGG | + | chr3_4:14298425-14298444 | Msa0491550:CDS | 50.0% | |
| ! | TGACTGGTGGCGATGGTTTA+GGG | + | chr3_4:14298438-14298457 | Msa0491550:CDS | 50.0% |
| GATCAGACAGAGGCTTAGGT+AGG | + | chr3_4:14298626-14298645 | Msa0491550:intron | 50.0% | |
| TATTCATGAGCTGCCTCAGC+AGG | - | chr3_4:14299191-14299210 | None:intergenic | 50.0% | |
| GCTCATGAATACCGTGTCCA+AGG | + | chr3_4:14299200-14299219 | Msa0491550:CDS | 50.0% | |
| GTACCTCGGTTGGGGCAAAA+CGG | - | chr3_4:14294672-14294691 | None:intergenic | 55.0% | |
| !! | AGAGAGAGGTACCTCGGTTG+GGG | - | chr3_4:14294680-14294699 | None:intergenic | 55.0% |
| !! | GAGAGAGAGGTACCTCGGTT+GGG | - | chr3_4:14294681-14294700 | None:intergenic | 55.0% |
| !! | AGAGAGAGAGGTACCTCGGT+TGG | - | chr3_4:14294682-14294701 | None:intergenic | 55.0% |
| ! | TCTTGCTCAGAGCATCCCCA+TGG | + | chr3_4:14296629-14296648 | Msa0491550:CDS | 55.0% |
| CCTTACGACGCATGACCATG+GGG | - | chr3_4:14296647-14296666 | None:intergenic | 55.0% | |
| AGCTGCACCACTACGTTCTG+TGG | + | chr3_4:14296776-14296795 | Msa0491550:CDS | 55.0% | |
| GCTGCACCACTACGTTCTGT+GGG | + | chr3_4:14296777-14296796 | Msa0491550:CDS | 55.0% | |
| CTGCACCACTACGTTCTGTG+GGG | + | chr3_4:14296778-14296797 | Msa0491550:CDS | 55.0% | |
| GGGGTTGAAGATCAGTGACG+CGG | + | chr3_4:14296797-14296816 | Msa0491550:CDS | 55.0% | |
| TGATAGAGAGCAAGGTGGGC+GGG | + | chr3_4:14296830-14296849 | Msa0491550:CDS | 55.0% | |
| GCAAGGTGGGCGGGAAAATT+TGG | + | chr3_4:14296839-14296858 | Msa0491550:CDS | 55.0% | |
| AGGTGGGCGGGAAAATTTGG+AGG | + | chr3_4:14296842-14296861 | Msa0491550:CDS | 55.0% | |
| GAAGGTTGCAGCTGTGGCAA+AGG | + | chr3_4:14296986-14297005 | Msa0491550:CDS | 55.0% | |
| TCTGGTCCTGGAATCGTGGA+TGG | + | chr3_4:14298093-14298112 | Msa0491550:CDS | 55.0% | |
| CACGAGGCAAACCCTGAGTA+TGG | - | chr3_4:14298223-14298242 | None:intergenic | 55.0% | |
| CATACTCAGGGTTTGCCTCG+TGG | + | chr3_4:14298221-14298240 | Msa0491550:intron | 55.0% | |
| TCAGGGTTTGCCTCGTGGTA+GGG | + | chr3_4:14298226-14298245 | Msa0491550:intron | 55.0% | |
| AGCAATAGTCCCCTACCACG+AGG | - | chr3_4:14298239-14298258 | None:intergenic | 55.0% | |
| TTCAGCCGGTAACCTTGCCA+AGG | + | chr3_4:14298274-14298293 | Msa0491550:CDS | 55.0% | |
| TCAGCCGGTAACCTTGCCAA+GGG | + | chr3_4:14298275-14298294 | Msa0491550:CDS | 55.0% | |
| GTCAATCCAGCATCATGGCC+AGG | + | chr3_4:14298365-14298384 | Msa0491550:CDS | 55.0% | |
| CAATCCAGCATCATGGCCAG+GGG | + | chr3_4:14298367-14298386 | Msa0491550:CDS | 55.0% | |
| GAAGGATTTATGGGTGCCCC+TGG | - | chr3_4:14298386-14298405 | None:intergenic | 55.0% | |
| ! | CAAATGGTGACTGGTGGCGA+TGG | + | chr3_4:14298431-14298450 | Msa0491550:CDS | 55.0% |
| ! | GTGACTGGTGGCGATGGTTT+AGG | + | chr3_4:14298437-14298456 | Msa0491550:CDS | 55.0% |
| GACGAAAAGGGGCAAGAGAC+AGG | + | chr3_4:14298585-14298604 | Msa0491550:intron | 55.0% | |
| TTCCAGGTCGTCCACGATAG+AGG | + | chr3_4:14299119-14299138 | Msa0491550:intron | 55.0% | |
| TTCCTCTATCGTGGACGACC+TGG | - | chr3_4:14299124-14299143 | None:intergenic | 55.0% | |
| CGTTGGACGTGGCATCATCA+AGG | + | chr3_4:14299157-14299176 | Msa0491550:CDS | 55.0% | |
| CAAGGCAGCAAATCCTGCTG+AGG | + | chr3_4:14299175-14299194 | Msa0491550:CDS | 55.0% | |
| TGTAACCCAGAGGAAGGCCT+CGG | + | chr3_4:14299323-14299342 | Msa0491550:three_prime_UTR | 55.0% | |
| GTTGGGGCAAAACGGAGCTG+CGG | - | chr3_4:14294664-14294683 | None:intergenic | 60.0% | |
| CCCCATGGTCATGCGTCGTA+AGG | + | chr3_4:14296644-14296663 | Msa0491550:CDS | 60.0% | |
| CTCAGGGTTTGCCTCGTGGT+AGG | + | chr3_4:14298225-14298244 | Msa0491550:intron | 60.0% | |
| CAGGGTTTGCCTCGTGGTAG+GGG | + | chr3_4:14298227-14298246 | Msa0491550:intron | 60.0% | |
| GTAACCCAGAGGAAGGCCTC+GGG | + | chr3_4:14299324-14299343 | Msa0491550:three_prime_UTR | 60.0% | |
| TGTACCCGAGGCCTTCCTCT+GGG | - | chr3_4:14299331-14299350 | None:intergenic | 60.0% | |
| ATGTACCCGAGGCCTTCCTC+TGG | - | chr3_4:14299332-14299351 | None:intergenic | 60.0% | |
| ! | GCTCCGTTTTGCCCCAACCG+AGG | + | chr3_4:14294666-14294685 | Msa0491550:five_prime_UTR | 65.0% |
| TGCGGCGGCGCAGAGAAAGG+GGG | - | chr3_4:14294646-14294665 | None:intergenic | 70.0% | |
| CTGCGGCGGCGCAGAGAAAG+GGG | - | chr3_4:14294647-14294666 | None:intergenic | 70.0% | |
| GCTGCGGCGGCGCAGAGAAA+GGG | - | chr3_4:14294648-14294667 | None:intergenic | 70.0% | |
| AGCTGCGGCGGCGCAGAGAA+AGG | - | chr3_4:14294649-14294668 | None:intergenic | 70.0% | |
| GGGGCAAAACGGAGCTGCGG+CGG | - | chr3_4:14294661-14294680 | None:intergenic | 70.0% | |
| GGTGCCCCTGGCCATGATGC+TGG | - | chr3_4:14298374-14298393 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 14294590 | 14299551 | 14294590 | ID=Msa0491550;Name=Msa0491550 |
| chr3_4 | mRNA | 14294590 | 14299551 | 14294590 | ID=Msa0491550-mRNA-1;Parent=Msa0491550;Name=Msa0491550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=155|1|1|1|0.83|0.71|7|298|478 |
| chr3_4 | exon | 14294590 | 14294687 | 14294590 | ID=Msa0491550-mRNA-1:exon:4216;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14296324 | 14297178 | 14296324 | ID=Msa0491550-mRNA-1:exon:4217;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14297553 | 14297636 | 14297553 | ID=Msa0491550-mRNA-1:exon:4218;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14297862 | 14297944 | 14297862 | ID=Msa0491550-mRNA-1:exon:4219;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14298041 | 14298128 | 14298041 | ID=Msa0491550-mRNA-1:exon:4220;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14298230 | 14298484 | 14298230 | ID=Msa0491550-mRNA-1:exon:4221;Parent=Msa0491550-mRNA-1 |
| chr3_4 | exon | 14299125 | 14299551 | 14299125 | ID=Msa0491550-mRNA-1:exon:4222;Parent=Msa0491550-mRNA-1 |
| chr3_4 | five_prime_UTR | 14294590 | 14294687 | 14294590 | ID=Msa0491550-mRNA-1:five_prime_utr;Parent=Msa0491550-mRNA-1 |
| chr3_4 | five_prime_UTR | 14296324 | 14296380 | 14296324 | ID=Msa0491550-mRNA-1:five_prime_utr;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14296381 | 14297178 | 14296381 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14297553 | 14297636 | 14297553 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14297862 | 14297944 | 14297862 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14298041 | 14298128 | 14298041 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14298230 | 14298484 | 14298230 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | CDS | 14299125 | 14299253 | 14299125 | ID=Msa0491550-mRNA-1:cds;Parent=Msa0491550-mRNA-1 |
| chr3_4 | three_prime_UTR | 14299254 | 14299551 | 14299254 | ID=Msa0491550-mRNA-1:three_prime_utr;Parent=Msa0491550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
