Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396810 | XP_003598676.1 | 96.842 | 190 | 6 | 0 | 1 | 190 | 1 | 190 | 2.42e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396810 | sp|Q9LK88|NQR_ARATH | 71.123 | 187 | 53 | 1 | 4 | 189 | 10 | 196 | 9.62e-91 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396810 | G7IW38 | 96.842 | 190 | 6 | 0 | 1 | 190 | 1 | 190 | 1.16e-131 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0396810 | Msa0396870 | 0.813072 | 3.079435e-51 | -8.615850e-47 |
| Msa0396810 | Msa0396880 | 0.809306 | 2.020040e-50 | -8.615850e-47 |
| Msa0396810 | Msa0531050 | 0.804935 | 1.701519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396810 | MtrunA17_Chr3g0084201 | 96.842 | 190 | 6 | 0 | 1 | 190 | 1 | 190 | 2.23e-135 | 376 |
| Msa0396810 | MtrunA17_Chr3g0084221 | 82.723 | 191 | 32 | 1 | 1 | 190 | 1 | 191 | 3.78e-114 | 322 |
| Msa0396810 | MtrunA17_Chr3g0084161 | 72.775 | 191 | 51 | 1 | 1 | 190 | 1 | 191 | 3.56e-102 | 292 |
| Msa0396810 | MtrunA17_Chr8g0353131 | 71.579 | 190 | 53 | 1 | 2 | 190 | 3 | 192 | 6.36e-101 | 289 |
| Msa0396810 | MtrunA17_Chr3g0084191 | 68.229 | 192 | 57 | 1 | 1 | 188 | 1 | 192 | 1.54e-90 | 273 |
| Msa0396810 | MtrunA17_Chr3g0082411 | 57.143 | 63 | 22 | 1 | 49 | 106 | 1 | 63 | 1.85e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396810 | AT3G27890.1 | 71.123 | 187 | 53 | 1 | 4 | 189 | 10 | 196 | 9.78e-92 | 266 |
Find 42 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAATTATTCTGTTTC+AGG | 0.128909 | 3_2:+15662964 | Msa0396810:CDS |
| ATTAAGGTTGCTGCACTTTC+TGG | 0.137687 | 3_2:+15662619 | Msa0396810:CDS |
| CAGTCAAGTGCATTCTTTAT+TGG | 0.224900 | 3_2:-15664170 | None:intergenic |
| TATTTCAAATTAAACACTTA+TGG | 0.231105 | 3_2:-15664485 | None:intergenic |
| GAATTTCACTCCATTCCTTT+TGG | 0.287992 | 3_2:+15664519 | Msa0396810:three_prime_UTR |
| CAACATGGCTGGAGTAATTA+AGG | 0.292283 | 3_2:+15662603 | Msa0396810:exon |
| AATTGCCAACAACCTATTCT+TGG | 0.304308 | 3_2:-15664402 | None:intergenic |
| CGAAAGGATTCAACTTCAAC+TGG | 0.330053 | 3_2:-15662898 | None:intergenic |
| CATCAAGATCACCAAATGTT+TGG | 0.330789 | 3_2:+15664195 | Msa0396810:CDS |
| GGTTTACCAGCCCAAACATT+TGG | 0.362348 | 3_2:-15664206 | None:intergenic |
| CAGTTGAAGTTGAATCCTTT+CGG | 0.382515 | 3_2:+15662899 | Msa0396810:CDS |
| ATCAAGATCACCAAATGTTT+GGG | 0.414288 | 3_2:+15664196 | Msa0396810:CDS |
| TTGCAGAGTAAATGCCTTCA+AGG | 0.434046 | 3_2:-15664432 | None:intergenic |
| GCATTTACTCTGCAACTTCA+AGG | 0.438426 | 3_2:+15664440 | Msa0396810:CDS |
| CAATAAAGAATGCACTTGAC+TGG | 0.455337 | 3_2:+15664171 | Msa0396810:CDS |
| AACACTGGTCTCATCCGTTC+TGG | 0.456650 | 3_2:+15662664 | Msa0396810:CDS |
| AACACTGATCTTGTGAAAGA+AGG | 0.474669 | 3_2:+15662868 | Msa0396810:CDS |
| GTACTTGTTCTTTATTTACA+TGG | 0.475159 | 3_2:+15664597 | Msa0396810:three_prime_UTR |
| TTTCTATATGAAATTCCAAA+AGG | 0.490343 | 3_2:-15664534 | None:intergenic |
| CAATATCATCTCCGACAAAT+CGG | 0.490712 | 3_2:+15664275 | Msa0396810:CDS |
| CGAGGAAAACTCCGATTTGT+CGG | 0.523747 | 3_2:-15664286 | None:intergenic |
| AGATGCCAAGAATAGGTTGT+TGG | 0.525362 | 3_2:+15664397 | Msa0396810:CDS |
| ACACTGATCTTGTGAAAGAA+GGG | 0.539191 | 3_2:+15662869 | Msa0396810:CDS |
| CCTGCGGCAATAGTGAGTGC+TGG | 0.540058 | 3_2:+15664227 | Msa0396810:CDS |
| TGATTAACAAACAACATGGC+TGG | 0.541569 | 3_2:+15662592 | Msa0396810:exon |
| CCAGCACTCACTATTGCCGC+AGG | 0.543014 | 3_2:-15664227 | None:intergenic |
| AGATCACCAAATGTTTGGGC+TGG | 0.543332 | 3_2:+15664200 | Msa0396810:CDS |
| CCAGCAAAATTTAACAGTGA+TGG | 0.543372 | 3_2:+15664359 | Msa0396810:CDS |
| TCGATGAAGATGCCAAGAAT+AGG | 0.548839 | 3_2:+15664390 | Msa0396810:CDS |
| ATATGAAATTCCAAAAGGAA+TGG | 0.558543 | 3_2:-15664529 | None:intergenic |
| ACAAGATCAGTGTTCAACAT+TGG | 0.581160 | 3_2:-15662859 | None:intergenic |
| AATAAAGAATGCACTTGACT+GGG | 0.582137 | 3_2:+15664172 | Msa0396810:CDS |
| CGAAAAGCTTCTTACAACAC+TGG | 0.596834 | 3_2:+15662649 | Msa0396810:CDS |
| GTGAGTGCTGGAGGAGGACA+TGG | 0.596944 | 3_2:+15664239 | Msa0396810:CDS |
| GCAATAGTGAGTGCTGGAGG+AGG | 0.597133 | 3_2:+15664233 | Msa0396810:CDS |
| GAAGTAGGAACCAACCAGAA+CGG | 0.644564 | 3_2:-15662678 | None:intergenic |
| ATGTTGTTTGTTAATCAATG+TGG | 0.654352 | 3_2:-15662586 | None:intergenic |
| TATTGATGAAATGAAGATCG+AGG | 0.655609 | 3_2:-15664304 | None:intergenic |
| GCGGCAATAGTGAGTGCTGG+AGG | 0.656496 | 3_2:+15664230 | Msa0396810:CDS |
| ACATTGATTAACAAACAACA+TGG | 0.684408 | 3_2:+15662588 | Msa0396810:exon |
| TGTTTGGGCTGGTAAACCTG+CGG | 0.686432 | 3_2:+15664211 | Msa0396810:CDS |
| AGTGCTGGAGGAGGACATGG+TGG | 0.705715 | 3_2:+15664242 | Msa0396810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATGTATCATTAA+TGG | - | chr3_2:15662726-15662745 | None:intergenic | 10.0% |
| !!! | TGATACATAATTTTTTATTT+AGG | + | chr3_2:15662730-15662749 | Msa0396810:intron | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_2:15663083-15663102 | None:intergenic | 10.0% |
| !!! | TATCCTTTTTTTTTTTTTTT+AGG | + | chr3_2:15663091-15663110 | Msa0396810:intron | 10.0% |
| !!! | ATCCTTTTTTTTTTTTTTTA+GGG | + | chr3_2:15663092-15663111 | Msa0396810:intron | 10.0% |
| !! | AAAAAATTATGTATCATTAA+TGG | - | chr3_2:15662726-15662745 | None:intergenic | 10.0% |
| !!! | TGATACATAATTTTTTATTT+AGG | + | chr3_2:15662730-15662749 | Msa0396810:intron | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_2:15663083-15663102 | None:intergenic | 10.0% |
| !!! | TATCCTTTTTTTTTTTTTTT+AGG | + | chr3_2:15663091-15663110 | Msa0396810:intron | 10.0% |
| !!! | ATCCTTTTTTTTTTTTTTTA+GGG | + | chr3_2:15663092-15663111 | Msa0396810:intron | 10.0% |
| !!! | TATTATTGATTATATTGATG+AGG | + | chr3_2:15662770-15662789 | Msa0396810:intron | 15.0% |
| !!! | ATTATTGATTATATTGATGA+GGG | + | chr3_2:15662771-15662790 | Msa0396810:intron | 15.0% |
| !! | TTCCCTAAAAAAAAAAAAAA+AGG | - | chr3_2:15663097-15663116 | None:intergenic | 15.0% |
| !!! | ACAAGTCAATTTTTTTTTTT+GGG | - | chr3_2:15663606-15663625 | None:intergenic | 15.0% |
| !!! | AACAAGTCAATTTTTTTTTT+TGG | - | chr3_2:15663607-15663626 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15663864-15663883 | Msa0396810:intron | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_2:15664488-15664507 | None:intergenic | 15.0% |
| !!! | TATTATTGATTATATTGATG+AGG | + | chr3_2:15662770-15662789 | Msa0396810:intron | 15.0% |
| !!! | ATTATTGATTATATTGATGA+GGG | + | chr3_2:15662771-15662790 | Msa0396810:intron | 15.0% |
| !! | TTCCCTAAAAAAAAAAAAAA+AGG | - | chr3_2:15663097-15663116 | None:intergenic | 15.0% |
| !!! | ACAAGTCAATTTTTTTTTTT+GGG | - | chr3_2:15663606-15663625 | None:intergenic | 15.0% |
| !!! | AACAAGTCAATTTTTTTTTT+TGG | - | chr3_2:15663607-15663626 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15663864-15663883 | Msa0396810:intron | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_2:15664488-15664507 | None:intergenic | 15.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15662964-15662983 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15662964-15662983 | Msa0396810:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_2:15663122-15663141 | None:intergenic | 20.0% |
| !! | AGAAAATGTTATTATTGCAT+TGG | - | chr3_2:15663346-15663365 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_2:15663423-15663442 | Msa0396810:intron | 20.0% |
| !! | AAACTATCCTTATTAACTAT+TGG | - | chr3_2:15663433-15663452 | None:intergenic | 20.0% |
| !! | AATAGTTAATAAGGATAGTT+TGG | + | chr3_2:15663432-15663451 | Msa0396810:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_2:15663886-15663905 | Msa0396810:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_2:15664130-15664149 | None:intergenic | 20.0% |
| !! | TTTCTATATGAAATTCCAAA+AGG | - | chr3_2:15664537-15664556 | None:intergenic | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15662964-15662983 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15662964-15662983 | Msa0396810:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_2:15663122-15663141 | None:intergenic | 20.0% |
| !! | AGAAAATGTTATTATTGCAT+TGG | - | chr3_2:15663346-15663365 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_2:15663423-15663442 | Msa0396810:intron | 20.0% |
| !! | AAACTATCCTTATTAACTAT+TGG | - | chr3_2:15663433-15663452 | None:intergenic | 20.0% |
| !! | AATAGTTAATAAGGATAGTT+TGG | + | chr3_2:15663432-15663451 | Msa0396810:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_2:15663886-15663905 | Msa0396810:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_2:15664130-15664149 | None:intergenic | 20.0% |
| !! | TTTCTATATGAAATTCCAAA+AGG | - | chr3_2:15664537-15664556 | None:intergenic | 20.0% |
| !! | ATGTTGTTTGTTAATCAATG+TGG | - | chr3_2:15662589-15662608 | None:intergenic | 25.0% |
| !! | ACATTGATTAACAAACAACA+TGG | + | chr3_2:15662588-15662607 | Msa0396810:exon | 25.0% |
| !!! | ATGGAAAAAAAAAGTGTTTG+TGG | - | chr3_2:15662707-15662726 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+AGG | + | chr3_2:15662968-15662987 | Msa0396810:intron | 25.0% |
| !!! | AGGGAGTATTATATTACATA+TGG | - | chr3_2:15663257-15663276 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCGTTTT+AGG | - | chr3_2:15663514-15663533 | None:intergenic | 25.0% |
| !!! | AAACGACATTCATTTTGAAA+CGG | + | chr3_2:15663515-15663534 | Msa0396810:intron | 25.0% |
| !! | AGACATATATGTCGAAATTT+TGG | + | chr3_2:15663654-15663673 | Msa0396810:intron | 25.0% |
| !! | GACATATATGTCGAAATTTT+GGG | + | chr3_2:15663655-15663674 | Msa0396810:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15663718-15663737 | Msa0396810:intron | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15664332-15664351 | None:intergenic | 25.0% |
| ! | ATATGAAATTCCAAAAGGAA+TGG | - | chr3_2:15664532-15664551 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_2:15664597-15664616 | Msa0396810:three_prime_UTR | 25.0% |
| !! | ATGTTGTTTGTTAATCAATG+TGG | - | chr3_2:15662589-15662608 | None:intergenic | 25.0% |
| !! | ACATTGATTAACAAACAACA+TGG | + | chr3_2:15662588-15662607 | Msa0396810:exon | 25.0% |
| !!! | ATGGAAAAAAAAAGTGTTTG+TGG | - | chr3_2:15662707-15662726 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+AGG | + | chr3_2:15662968-15662987 | Msa0396810:intron | 25.0% |
| !!! | AGGGAGTATTATATTACATA+TGG | - | chr3_2:15663257-15663276 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCGTTTT+AGG | - | chr3_2:15663514-15663533 | None:intergenic | 25.0% |
| !!! | AAACGACATTCATTTTGAAA+CGG | + | chr3_2:15663515-15663534 | Msa0396810:intron | 25.0% |
| !! | AGACATATATGTCGAAATTT+TGG | + | chr3_2:15663654-15663673 | Msa0396810:intron | 25.0% |
| !! | GACATATATGTCGAAATTTT+GGG | + | chr3_2:15663655-15663674 | Msa0396810:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15663718-15663737 | Msa0396810:intron | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15664332-15664351 | None:intergenic | 25.0% |
| ! | ATATGAAATTCCAAAAGGAA+TGG | - | chr3_2:15664532-15664551 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_2:15664597-15664616 | Msa0396810:three_prime_UTR | 25.0% |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15663230-15663249 | Msa0396810:intron | 30.0% |
| AAGCGACATTTATCTTGAAA+CGG | - | chr3_2:15663280-15663299 | None:intergenic | 30.0% | |
| ! | TGTGCAAAGTATTAATTGGA+GGG | - | chr3_2:15663380-15663399 | None:intergenic | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | - | chr3_2:15663384-15663403 | None:intergenic | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15663717-15663736 | Msa0396810:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+TGG | + | chr3_2:15663975-15663994 | Msa0396810:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_2:15664117-15664136 | None:intergenic | 30.0% | |
| AATAAAGAATGCACTTGACT+GGG | + | chr3_2:15664172-15664191 | Msa0396810:CDS | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15664196-15664215 | Msa0396810:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15664307-15664326 | None:intergenic | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_2:15664461-15664480 | Msa0396810:exon | 30.0% | |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15663230-15663249 | Msa0396810:intron | 30.0% |
| AAGCGACATTTATCTTGAAA+CGG | - | chr3_2:15663280-15663299 | None:intergenic | 30.0% | |
| ! | TGTGCAAAGTATTAATTGGA+GGG | - | chr3_2:15663380-15663399 | None:intergenic | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | - | chr3_2:15663384-15663403 | None:intergenic | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15663717-15663736 | Msa0396810:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+TGG | + | chr3_2:15663975-15663994 | Msa0396810:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_2:15664117-15664136 | None:intergenic | 30.0% | |
| AATAAAGAATGCACTTGACT+GGG | + | chr3_2:15664172-15664191 | Msa0396810:CDS | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15664196-15664215 | Msa0396810:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15664307-15664326 | None:intergenic | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_2:15664461-15664480 | Msa0396810:exon | 30.0% | |
| TGATTAACAAACAACATGGC+TGG | + | chr3_2:15662592-15662611 | Msa0396810:exon | 35.0% | |
| AAGTGTTTGTGGTAAGAAGT+AGG | - | chr3_2:15662696-15662715 | None:intergenic | 35.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15662801-15662820 | Msa0396810:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15662802-15662821 | Msa0396810:CDS | 35.0% | |
| ACAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15662862-15662881 | None:intergenic | 35.0% | |
| AACACTGATCTTGTGAAAGA+AGG | + | chr3_2:15662868-15662887 | Msa0396810:CDS | 35.0% | |
| ACACTGATCTTGTGAAAGAA+GGG | + | chr3_2:15662869-15662888 | Msa0396810:CDS | 35.0% | |
| CAGTTGAAGTTGAATCCTTT+CGG | + | chr3_2:15662899-15662918 | Msa0396810:CDS | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15662913-15662932 | Msa0396810:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15662917-15662936 | None:intergenic | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_2:15663140-15663159 | Msa0396810:intron | 35.0% | |
| GACATTTATCTTGAAACGGA+GGG | - | chr3_2:15663276-15663295 | None:intergenic | 35.0% | |
| ! | GTGTGCAAAGTATTAATTGG+AGG | - | chr3_2:15663381-15663400 | None:intergenic | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr3_2:15663519-15663538 | Msa0396810:intron | 35.0% |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15663714-15663733 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15664090-15664109 | None:intergenic | 35.0% |
| CAGTCAAGTGCATTCTTTAT+TGG | - | chr3_2:15664173-15664192 | None:intergenic | 35.0% | |
| CAATAAAGAATGCACTTGAC+TGG | + | chr3_2:15664171-15664190 | Msa0396810:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15664195-15664214 | Msa0396810:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15664275-15664294 | Msa0396810:CDS | 35.0% | |
| ! | TCACTGTTAAATTTTGCTGG+AGG | - | chr3_2:15664359-15664378 | None:intergenic | 35.0% |
| ! | CCATCACTGTTAAATTTTGC+TGG | - | chr3_2:15664362-15664381 | None:intergenic | 35.0% |
| CCAGCAAAATTTAACAGTGA+TGG | + | chr3_2:15664359-15664378 | Msa0396810:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_2:15664405-15664424 | None:intergenic | 35.0% | |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_2:15664519-15664538 | Msa0396810:three_prime_UTR | 35.0% |
| TGATTAACAAACAACATGGC+TGG | + | chr3_2:15662592-15662611 | Msa0396810:exon | 35.0% | |
| AAGTGTTTGTGGTAAGAAGT+AGG | - | chr3_2:15662696-15662715 | None:intergenic | 35.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15662801-15662820 | Msa0396810:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15662802-15662821 | Msa0396810:CDS | 35.0% | |
| ACAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15662862-15662881 | None:intergenic | 35.0% | |
| AACACTGATCTTGTGAAAGA+AGG | + | chr3_2:15662868-15662887 | Msa0396810:CDS | 35.0% | |
| ACACTGATCTTGTGAAAGAA+GGG | + | chr3_2:15662869-15662888 | Msa0396810:CDS | 35.0% | |
| CAGTTGAAGTTGAATCCTTT+CGG | + | chr3_2:15662899-15662918 | Msa0396810:CDS | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15662913-15662932 | Msa0396810:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15662917-15662936 | None:intergenic | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_2:15663140-15663159 | Msa0396810:intron | 35.0% | |
| GACATTTATCTTGAAACGGA+GGG | - | chr3_2:15663276-15663295 | None:intergenic | 35.0% | |
| ! | GTGTGCAAAGTATTAATTGG+AGG | - | chr3_2:15663381-15663400 | None:intergenic | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr3_2:15663519-15663538 | Msa0396810:intron | 35.0% |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15663714-15663733 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15664090-15664109 | None:intergenic | 35.0% |
| CAGTCAAGTGCATTCTTTAT+TGG | - | chr3_2:15664173-15664192 | None:intergenic | 35.0% | |
| CAATAAAGAATGCACTTGAC+TGG | + | chr3_2:15664171-15664190 | Msa0396810:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15664195-15664214 | Msa0396810:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15664275-15664294 | Msa0396810:CDS | 35.0% | |
| ! | TCACTGTTAAATTTTGCTGG+AGG | - | chr3_2:15664359-15664378 | None:intergenic | 35.0% |
| ! | CCATCACTGTTAAATTTTGC+TGG | - | chr3_2:15664362-15664381 | None:intergenic | 35.0% |
| CCAGCAAAATTTAACAGTGA+TGG | + | chr3_2:15664359-15664378 | Msa0396810:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_2:15664405-15664424 | None:intergenic | 35.0% | |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_2:15664519-15664538 | Msa0396810:three_prime_UTR | 35.0% |
| CAACATGGCTGGAGTAATTA+AGG | + | chr3_2:15662603-15662622 | Msa0396810:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15662619-15662638 | Msa0396810:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15662649-15662668 | Msa0396810:CDS | 40.0% | |
| CGAAAGGATTCAACTTCAAC+TGG | - | chr3_2:15662901-15662920 | None:intergenic | 40.0% | |
| GTAAACATCATTGTCCCTGT+GGG | + | chr3_2:15662990-15663009 | Msa0396810:intron | 40.0% | |
| TAAACATCATTGTCCCTGTG+GGG | + | chr3_2:15662991-15663010 | Msa0396810:intron | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_2:15663007-15663026 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_2:15663008-15663027 | None:intergenic | 40.0% | |
| CGACATTTATCTTGAAACGG+AGG | - | chr3_2:15663277-15663296 | None:intergenic | 40.0% | |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr3_2:15663518-15663537 | Msa0396810:intron | 40.0% |
| CATGGTTAACAATGCTGTCA+AGG | - | chr3_2:15663696-15663715 | None:intergenic | 40.0% | |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_2:15664390-15664409 | Msa0396810:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_2:15664397-15664416 | Msa0396810:CDS | 40.0% | |
| ! | GGCAATTCTTTTGTCCTTGA+AGG | + | chr3_2:15664418-15664437 | Msa0396810:CDS | 40.0% |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15664435-15664454 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15664440-15664459 | Msa0396810:CDS | 40.0% | |
| CAACATGGCTGGAGTAATTA+AGG | + | chr3_2:15662603-15662622 | Msa0396810:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15662619-15662638 | Msa0396810:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15662649-15662668 | Msa0396810:CDS | 40.0% | |
| CGAAAGGATTCAACTTCAAC+TGG | - | chr3_2:15662901-15662920 | None:intergenic | 40.0% | |
| GTAAACATCATTGTCCCTGT+GGG | + | chr3_2:15662990-15663009 | Msa0396810:intron | 40.0% | |
| TAAACATCATTGTCCCTGTG+GGG | + | chr3_2:15662991-15663010 | Msa0396810:intron | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_2:15663007-15663026 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_2:15663008-15663027 | None:intergenic | 40.0% | |
| CGACATTTATCTTGAAACGG+AGG | - | chr3_2:15663277-15663296 | None:intergenic | 40.0% | |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr3_2:15663518-15663537 | Msa0396810:intron | 40.0% |
| CATGGTTAACAATGCTGTCA+AGG | - | chr3_2:15663696-15663715 | None:intergenic | 40.0% | |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_2:15664390-15664409 | Msa0396810:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_2:15664397-15664416 | Msa0396810:CDS | 40.0% | |
| ! | GGCAATTCTTTTGTCCTTGA+AGG | + | chr3_2:15664418-15664437 | Msa0396810:CDS | 40.0% |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15664435-15664454 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15664440-15664459 | Msa0396810:CDS | 40.0% | |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_2:15662681-15662700 | None:intergenic | 45.0% | |
| GGTAAACATCATTGTCCCTG+TGG | + | chr3_2:15662989-15663008 | Msa0396810:intron | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_2:15663941-15663960 | Msa0396810:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_2:15663960-15663979 | None:intergenic | 45.0% | |
| CAACGACAGTTAACTGCCAT+CGG | + | chr3_2:15664048-15664067 | Msa0396810:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15664087-15664106 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15664200-15664219 | Msa0396810:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15664209-15664228 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15664289-15664308 | None:intergenic | 45.0% |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_2:15662681-15662700 | None:intergenic | 45.0% | |
| GGTAAACATCATTGTCCCTG+TGG | + | chr3_2:15662989-15663008 | Msa0396810:intron | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_2:15663941-15663960 | Msa0396810:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_2:15663960-15663979 | None:intergenic | 45.0% | |
| CAACGACAGTTAACTGCCAT+CGG | + | chr3_2:15664048-15664067 | Msa0396810:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15664087-15664106 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15664200-15664219 | Msa0396810:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15664209-15664228 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15664289-15664308 | None:intergenic | 45.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15663195-15663214 | Msa0396810:intron | 5.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15663195-15663214 | Msa0396810:intron | 5.0% |
| ! | AACACTGGTCTCATCCGTTC+TGG | + | chr3_2:15662664-15662683 | Msa0396810:CDS | 50.0% |
| !!! | CGGTCGTTTAGCTTTTCCGA+TGG | - | chr3_2:15664067-15664086 | None:intergenic | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15664211-15664230 | Msa0396810:CDS | 50.0% |
| ! | AACACTGGTCTCATCCGTTC+TGG | + | chr3_2:15662664-15662683 | Msa0396810:CDS | 50.0% |
| !!! | CGGTCGTTTAGCTTTTCCGA+TGG | - | chr3_2:15664067-15664086 | None:intergenic | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15664211-15664230 | Msa0396810:CDS | 50.0% |
| CTGGTCTCATCCGTTCTGGT+TGG | + | chr3_2:15662668-15662687 | Msa0396810:intron | 55.0% | |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15664072-15664091 | Msa0396810:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15664073-15664092 | Msa0396810:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15664233-15664252 | Msa0396810:CDS | 55.0% |
| CTGGTCTCATCCGTTCTGGT+TGG | + | chr3_2:15662668-15662687 | Msa0396810:intron | 55.0% | |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15664072-15664091 | Msa0396810:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15664073-15664092 | Msa0396810:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15664233-15664252 | Msa0396810:CDS | 55.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15664230-15664249 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15664227-15664246 | Msa0396810:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15664230-15664249 | Msa0396810:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15664239-15664258 | Msa0396810:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15664242-15664261 | Msa0396810:CDS | 60.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15664230-15664249 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15664227-15664246 | Msa0396810:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15664230-15664249 | Msa0396810:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15664239-15664258 | Msa0396810:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15664242-15664261 | Msa0396810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15662545 | 15664667 | 15662545 | ID=Msa0396810;Name=Msa0396810 |
| chr3_2 | mRNA | 15662545 | 15664667 | 15662545 | ID=Msa0396810-mRNA-1;Parent=Msa0396810;Name=Msa0396810-mRNA-1;_AED=0.27;_eAED=0.27;_QI=62|1|0.66|1|1|1|3|195|190 |
| chr3_2 | exon | 15662545 | 15662685 | 15662545 | ID=Msa0396810-mRNA-1:exon:3501;Parent=Msa0396810-mRNA-1 |
| chr3_2 | exon | 15662797 | 15662985 | 15662797 | ID=Msa0396810-mRNA-1:exon:3502;Parent=Msa0396810-mRNA-1 |
| chr3_2 | exon | 15664168 | 15664667 | 15664168 | ID=Msa0396810-mRNA-1:exon:3503;Parent=Msa0396810-mRNA-1 |
| chr3_2 | five_prime_UTR | 15662545 | 15662606 | 15662545 | ID=Msa0396810-mRNA-1:five_prime_utr;Parent=Msa0396810-mRNA-1 |
| chr3_2 | CDS | 15662607 | 15662685 | 15662607 | ID=Msa0396810-mRNA-1:cds;Parent=Msa0396810-mRNA-1 |
| chr3_2 | CDS | 15662797 | 15662985 | 15662797 | ID=Msa0396810-mRNA-1:cds;Parent=Msa0396810-mRNA-1 |
| chr3_2 | CDS | 15664168 | 15664472 | 15664168 | ID=Msa0396810-mRNA-1:cds;Parent=Msa0396810-mRNA-1 |
| chr3_2 | three_prime_UTR | 15664473 | 15664667 | 15664473 | ID=Msa0396810-mRNA-1:three_prime_utr;Parent=Msa0396810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
