Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396880 | XP_003598676.1 | 96.825 | 189 | 6 | 0 | 1 | 189 | 1 | 189 | 3.34e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396880 | sp|Q9LK88|NQR_ARATH | 72.727 | 187 | 50 | 1 | 4 | 189 | 10 | 196 | 4.16e-93 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396880 | G7IW38 | 96.825 | 189 | 6 | 0 | 1 | 189 | 1 | 189 | 1.59e-130 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000800 | Msa0396880 | 0.805261 | 1.453616e-49 | -8.615850e-47 |
| Msa0011010 | Msa0396880 | 0.812065 | 5.113466e-51 | -8.615850e-47 |
| Msa0027020 | Msa0396880 | -0.801729 | 7.849817e-49 | -8.615850e-47 |
| Msa0034590 | Msa0396880 | -0.801257 | 9.806259e-49 | -8.615850e-47 |
| Msa0042520 | Msa0396880 | -0.806316 | 8.728994e-50 | -8.615850e-47 |
| Msa0048380 | Msa0396880 | 0.810732 | 9.960268e-51 | -8.615850e-47 |
| Msa0051910 | Msa0396880 | 0.810192 | 1.302743e-50 | -8.615850e-47 |
| Msa0070120 | Msa0396880 | 0.821691 | 3.529199e-53 | -8.615850e-47 |
| Msa0078160 | Msa0396880 | -0.804894 | 1.734821e-49 | -8.615850e-47 |
| Msa0107830 | Msa0396880 | 0.857474 | 1.592732e-62 | -8.615850e-47 |
| Msa0117650 | Msa0396880 | 0.828171 | 1.042743e-54 | -8.615850e-47 |
| Msa0141410 | Msa0396880 | 0.810097 | 1.365384e-50 | -8.615850e-47 |
| Msa0143640 | Msa0396880 | 0.821647 | 3.612699e-53 | -8.615850e-47 |
| Msa0143830 | Msa0396880 | 0.816134 | 6.468319e-52 | -8.615850e-47 |
| Msa0145050 | Msa0396880 | 0.819204 | 1.313077e-52 | -8.615850e-47 |
| Msa0161230 | Msa0396880 | 0.833002 | 6.847764e-56 | -8.615850e-47 |
| Msa0167160 | Msa0396880 | -0.801737 | 7.817015e-49 | -8.615850e-47 |
| Msa0175240 | Msa0396880 | -0.816169 | 6.351421e-52 | -8.615850e-47 |
| Msa0185040 | Msa0396880 | 0.803609 | 3.213308e-49 | -8.615850e-47 |
| Msa0186400 | Msa0396880 | -0.802688 | 4.982809e-49 | -8.615850e-47 |
| Msa0193950 | Msa0396880 | 0.830034 | 3.686532e-55 | -8.615850e-47 |
| Msa0235820 | Msa0396880 | 0.809362 | 1.964496e-50 | -8.615850e-47 |
| Msa0367350 | Msa0396880 | 0.813992 | 1.932696e-51 | -8.615850e-47 |
| Msa0369990 | Msa0396880 | 0.804362 | 2.240040e-49 | -8.615850e-47 |
| Msa0378320 | Msa0396880 | 0.811022 | 8.616587e-51 | -8.615850e-47 |
| Msa0390200 | Msa0396880 | 0.851499 | 8.527561e-61 | -8.615850e-47 |
| Msa0396810 | Msa0396880 | 0.809306 | 2.020040e-50 | -8.615850e-47 |
| Msa0396820 | Msa0396880 | 0.800891 | 1.165040e-48 | -8.615850e-47 |
| Msa0396870 | Msa0396880 | 0.848375 | 6.382006e-60 | -8.615850e-47 |
| Msa0396880 | Msa0405200 | 0.800956 | 1.130089e-48 | -8.615850e-47 |
| Msa0396880 | Msa0415010 | 0.815942 | 7.137626e-52 | -8.615850e-47 |
| Msa0396880 | Msa0427660 | 0.816340 | 5.815162e-52 | -8.615850e-47 |
| Msa0396880 | Msa0449490 | 0.809759 | 1.614210e-50 | -8.615850e-47 |
| Msa0396880 | Msa0459930 | 0.830942 | 2.209568e-55 | -8.615850e-47 |
| Msa0396880 | Msa0469770 | -0.805305 | 1.423230e-49 | -8.615850e-47 |
| Msa0396880 | Msa0480540 | 0.809392 | 1.935816e-50 | -8.615850e-47 |
| Msa0396880 | Msa0480550 | 0.803226 | 3.856158e-49 | -8.615850e-47 |
| Msa0396880 | Msa0491980 | 0.838332 | 3.062896e-57 | -8.615850e-47 |
| Msa0396880 | Msa0493870 | 0.813506 | 2.472352e-51 | -8.615850e-47 |
| Msa0396880 | Msa0497680 | 0.809601 | 1.745312e-50 | -8.615850e-47 |
| Msa0396880 | Msa0518490 | 0.805138 | 1.542523e-49 | -8.615850e-47 |
| Msa0396880 | Msa0525180 | -0.802978 | 4.339372e-49 | -8.615850e-47 |
| Msa0396880 | Msa0531050 | 0.818054 | 2.394429e-52 | -8.615850e-47 |
| Msa0396880 | Msa0534610 | 0.823786 | 1.148012e-53 | -8.615850e-47 |
| Msa0396880 | Msa0550980 | -0.814365 | 1.598854e-51 | -8.615850e-47 |
| Msa0396880 | Msa0554770 | -0.811885 | 5.595985e-51 | -8.615850e-47 |
| Msa0396880 | Msa0556270 | 0.800828 | 1.199874e-48 | -8.615850e-47 |
| Msa0396880 | Msa0557240 | 0.814594 | 1.422911e-51 | -8.615850e-47 |
| Msa0396880 | Msa0561830 | 0.810712 | 1.005627e-50 | -8.615850e-47 |
| Msa0396880 | Msa0565180 | 0.822400 | 2.417444e-53 | -8.615850e-47 |
| Msa0396880 | Msa0565370 | -0.816119 | 6.518205e-52 | -8.615850e-47 |
| Msa0396880 | Msa0565430 | -0.813069 | 3.084825e-51 | -8.615850e-47 |
| Msa0396880 | Msa0566530 | 0.809978 | 1.448027e-50 | -8.615850e-47 |
| Msa0396880 | Msa0580410 | -0.800296 | 1.540353e-48 | -8.615850e-47 |
| Msa0396880 | Msa0580840 | 0.812314 | 4.512292e-51 | -8.615850e-47 |
| Msa0396880 | Msa0580890 | -0.804443 | 2.154631e-49 | -8.615850e-47 |
| Msa0396880 | Msa0588040 | 0.822768 | 1.985406e-53 | -8.615850e-47 |
| Msa0396880 | Msa0590810 | 0.820047 | 8.432096e-53 | -8.615850e-47 |
| Msa0396880 | Msa0597180 | 0.800009 | 1.762310e-48 | -8.615850e-47 |
| Msa0396880 | Msa0597370 | -0.835974 | 1.227591e-56 | -8.615850e-47 |
| Msa0396880 | Msa0597800 | 0.809550 | 1.790541e-50 | -8.615850e-47 |
| Msa0396880 | Msa0597820 | 0.828196 | 1.028171e-54 | -8.615850e-47 |
| Msa0396880 | Msa0603310 | 0.812460 | 4.193219e-51 | -8.615850e-47 |
| Msa0396880 | Msa0606340 | -0.819627 | 1.051635e-52 | -8.615850e-47 |
| Msa0396880 | Msa0614960 | 0.801365 | 9.318496e-49 | -8.615850e-47 |
| Msa0396880 | Msa0615070 | 0.808813 | 2.575483e-50 | -8.615850e-47 |
| Msa0396880 | Msa0616890 | -0.800062 | 1.718914e-48 | -8.615850e-47 |
| Msa0396880 | Msa0619030 | -0.831561 | 1.556832e-55 | -8.615850e-47 |
| Msa0396880 | Msa0628200 | 0.824798 | 6.640995e-54 | -8.615850e-47 |
| Msa0396880 | Msa0631130 | 0.801885 | 7.289387e-49 | -8.615850e-47 |
| Msa0396880 | Msa0637590 | 0.816619 | 5.036460e-52 | -8.615850e-47 |
| Msa0396880 | Msa0637700 | 0.807785 | 4.265419e-50 | -8.615850e-47 |
| Msa0396880 | Msa0644340 | 0.840001 | 1.130837e-57 | -8.615850e-47 |
| Msa0396880 | Msa0652590 | 0.804526 | 2.071175e-49 | -8.615850e-47 |
| Msa0396880 | Msa0655370 | 0.805345 | 1.396015e-49 | -8.615850e-47 |
| Msa0396880 | Msa0657340 | 0.818944 | 1.504511e-52 | -8.615850e-47 |
| Msa0396880 | Msa0669350 | 0.819136 | 1.360956e-52 | -8.615850e-47 |
| Msa0396880 | Msa0676570 | -0.805712 | 1.169121e-49 | -8.615850e-47 |
| Msa0396880 | Msa0690100 | -0.808503 | 3.000356e-50 | -8.615850e-47 |
| Msa0396880 | Msa0694320 | 0.817090 | 3.949745e-52 | -8.615850e-47 |
| Msa0396880 | Msa0698110 | 0.811312 | 7.455601e-51 | -8.615850e-47 |
| Msa0396880 | Msa0699170 | 0.811176 | 7.979138e-51 | -8.615850e-47 |
| Msa0396880 | Msa0701430 | 0.835808 | 1.352438e-56 | -8.615850e-47 |
| Msa0396880 | Msa0708840 | -0.802419 | 5.661376e-49 | -8.615850e-47 |
| Msa0396880 | Msa0727230 | 0.816143 | 6.436120e-52 | -8.615850e-47 |
| Msa0396880 | Msa0731580 | 0.840454 | 8.609452e-58 | -8.615850e-47 |
| Msa0396880 | Msa0743370 | 0.825780 | 3.888457e-54 | -8.615850e-47 |
| Msa0396880 | Msa0744550 | 0.806820 | 6.830356e-50 | -8.615850e-47 |
| Msa0396880 | Msa0744710 | 0.841848 | 3.705618e-58 | -8.615850e-47 |
| Msa0396880 | Msa0771810 | 0.808952 | 2.405175e-50 | -8.615850e-47 |
| Msa0396880 | Msa0773030 | 0.804626 | 1.973808e-49 | -8.615850e-47 |
| Msa0396880 | Msa0786600 | -0.810527 | 1.102753e-50 | -8.615850e-47 |
| Msa0396880 | Msa0792410 | 0.804348 | 2.255390e-49 | -8.615850e-47 |
| Msa0396880 | Msa0793270 | 0.806564 | 7.735960e-50 | -8.615850e-47 |
| Msa0396880 | Msa0795320 | 0.805820 | 1.109676e-49 | -8.615850e-47 |
| Msa0396880 | Msa0795910 | -0.800286 | 1.547392e-48 | -8.615850e-47 |
| Msa0396880 | Msa0802600 | 0.820548 | 6.470687e-53 | -8.615850e-47 |
| Msa0396880 | Msa0809920 | 0.822454 | 2.348581e-53 | -8.615850e-47 |
| Msa0396880 | Msa0810340 | 0.808210 | 3.464746e-50 | -8.615850e-47 |
| Msa0396880 | Msa0814660 | 0.828231 | 1.008812e-54 | -8.615850e-47 |
| Msa0396880 | Msa0822680 | -0.821166 | 4.665118e-53 | -8.615850e-47 |
| Msa0396880 | Msa0826240 | 0.846002 | 2.854026e-59 | -8.615850e-47 |
| Msa0396880 | Msa0829250 | -0.806832 | 6.793584e-50 | -8.615850e-47 |
| Msa0396880 | Msa0829990 | 0.815865 | 7.427568e-52 | -8.615850e-47 |
| Msa0396880 | Msa0831310 | 0.805946 | 1.044448e-49 | -8.615850e-47 |
| Msa0396880 | Msa0850480 | 0.819216 | 1.305120e-52 | -8.615850e-47 |
| Msa0396880 | Msa0855260 | 0.806411 | 8.335143e-50 | -8.615850e-47 |
| Msa0396880 | Msa0865830 | 0.803331 | 3.668172e-49 | -8.615850e-47 |
| Msa0396880 | Msa0874750 | 0.815264 | 1.010821e-51 | -8.615850e-47 |
| Msa0396880 | Msa0904590 | 0.805753 | 1.146320e-49 | -8.615850e-47 |
| Msa0396880 | Msa0921790 | 0.804374 | 2.227435e-49 | -8.615850e-47 |
| Msa0396880 | Msa0925940 | 0.813779 | 2.153910e-51 | -8.615850e-47 |
| Msa0396880 | Msa0936630 | 0.817156 | 3.816930e-52 | -8.615850e-47 |
| Msa0396880 | Msa0968990 | 0.804775 | 1.837513e-49 | -8.615850e-47 |
| Msa0396880 | Msa0976400 | 0.802972 | 4.352888e-49 | -8.615850e-47 |
| Msa0396880 | Msa1001120 | 0.800725 | 1.259688e-48 | -8.615850e-47 |
| Msa0396880 | Msa1003920 | 0.811076 | 8.390508e-51 | -8.615850e-47 |
| Msa0396880 | Msa1029860 | 0.810449 | 1.146578e-50 | -8.615850e-47 |
| Msa0396880 | Msa1030210 | 0.801706 | 7.934060e-49 | -8.615850e-47 |
| Msa0396880 | Msa1035050 | 0.836004 | 1.206070e-56 | -8.615850e-47 |
| Msa0396880 | Msa1039150 | -0.812452 | 4.209146e-51 | -8.615850e-47 |
| Msa0396880 | Msa1062060 | 0.817411 | 3.343773e-52 | -8.615850e-47 |
| Msa0396880 | Msa1069250 | 0.815976 | 7.013676e-52 | -8.615850e-47 |
| Msa0396880 | Msa1075090 | 0.846419 | 2.198158e-59 | -8.615850e-47 |
| Msa0396880 | Msa1078120 | -0.813600 | 2.358339e-51 | -8.615850e-47 |
| Msa0396880 | Msa1078210 | -0.807221 | 5.618153e-50 | -8.615850e-47 |
| Msa0396880 | Msa1083660 | -0.824950 | 6.112863e-54 | -8.615850e-47 |
| Msa0396880 | Msa1095590 | 0.814931 | 1.197858e-51 | -8.615850e-47 |
| Msa0396880 | Msa1103450 | 0.800388 | 1.475494e-48 | -8.615850e-47 |
| Msa0396880 | Msa1107220 | 0.835374 | 1.741297e-56 | -8.615850e-47 |
| Msa0396880 | Msa1107250 | 0.801097 | 1.057437e-48 | -8.615850e-47 |
| Msa0396880 | Msa1108560 | 0.807356 | 5.262118e-50 | -8.615850e-47 |
| Msa0396880 | Msa1115980 | 0.822532 | 2.252964e-53 | -8.615850e-47 |
| Msa0396880 | Msa1123440 | -0.805843 | 1.097326e-49 | -8.615850e-47 |
| Msa0396880 | Msa1130150 | -0.801163 | 1.025177e-48 | -8.615850e-47 |
| Msa0396880 | Msa1136630 | 0.810740 | 9.916637e-51 | -8.615850e-47 |
| Msa0396880 | Msa1136690 | 0.803084 | 4.127748e-49 | -8.615850e-47 |
| Msa0396880 | Msa1137750 | 0.840725 | 7.314595e-58 | -8.615850e-47 |
| Msa0396880 | Msa1142390 | 0.819516 | 1.114692e-52 | -8.615850e-47 |
| Msa0396880 | Msa1150760 | 0.824325 | 8.581457e-54 | -8.615850e-47 |
| Msa0396880 | Msa1162430 | 0.829322 | 5.494051e-55 | -8.615850e-47 |
| Msa0396880 | Msa1174280 | 0.836652 | 8.256143e-57 | -8.615850e-47 |
| Msa0396880 | Msa1177650 | 0.816693 | 4.848157e-52 | -8.615850e-47 |
| Msa0396880 | Msa1183870 | 0.800647 | 1.306765e-48 | -8.615850e-47 |
| Msa0396880 | Msa1185270 | 0.808941 | 2.418583e-50 | -8.615850e-47 |
| Msa0396880 | Msa1191270 | 0.815446 | 9.208899e-52 | -8.615850e-47 |
| Msa0396880 | Msa1199540 | -0.804922 | 1.711942e-49 | -8.615850e-47 |
| Msa0396880 | Msa1202110 | 0.844397 | 7.752359e-59 | -8.615850e-47 |
| Msa0396880 | Msa1211610 | 0.835214 | 1.911326e-56 | -8.615850e-47 |
| Msa0396880 | Msa1212150 | -0.811486 | 6.835713e-51 | -8.615850e-47 |
| Msa0396880 | Msa1212210 | -0.804813 | 1.804008e-49 | -8.615850e-47 |
| Msa0396880 | Msa1221270 | 0.803664 | 3.130127e-49 | -8.615850e-47 |
| Msa0396880 | Msa1221520 | 0.806405 | 8.356821e-50 | -8.615850e-47 |
| Msa0396880 | Msa1223710 | 0.826276 | 2.965480e-54 | -8.615850e-47 |
| Msa0396880 | Msa1223960 | 0.807486 | 4.936571e-50 | -8.615850e-47 |
| Msa0396880 | Msa1223990 | 0.808721 | 2.695237e-50 | -8.615850e-47 |
| Msa0396880 | Msa1239190 | 0.820626 | 6.210817e-53 | -8.615850e-47 |
| Msa0396880 | Msa1239210 | 0.817100 | 3.929032e-52 | -8.615850e-47 |
| Msa0396880 | Msa1239940 | 0.809777 | 1.599710e-50 | -8.615850e-47 |
| Msa0396880 | Msa1254870 | 0.843211 | 1.610621e-58 | -8.615850e-47 |
| Msa0396880 | Msa1262540 | 0.802872 | 4.564369e-49 | -8.615850e-47 |
| Msa0396880 | Msa1263370 | 0.804232 | 2.384890e-49 | -8.615850e-47 |
| Msa0396880 | Msa1263520 | 0.805303 | 1.424411e-49 | -8.615850e-47 |
| Msa0396880 | Msa1264940 | 0.811263 | 7.641244e-51 | -8.615850e-47 |
| Msa0396880 | Msa1269200 | 0.824000 | 1.022898e-53 | -8.615850e-47 |
| Msa0396880 | Msa1273320 | 0.824703 | 6.993004e-54 | -8.615850e-47 |
| Msa0396880 | Msa1299480 | 0.830955 | 2.194530e-55 | -8.615850e-47 |
| Msa0396880 | Msa1303150 | 0.810682 | 1.020660e-50 | -8.615850e-47 |
| Msa0396880 | Msa1316960 | 0.805402 | 1.358403e-49 | -8.615850e-47 |
| Msa0396880 | Msa1317740 | 0.827333 | 1.658013e-54 | -8.615850e-47 |
| Msa0396880 | Msa1320160 | 0.821796 | 3.337722e-53 | -8.615850e-47 |
| Msa0396880 | Msa1328430 | 0.845682 | 3.487958e-59 | -8.615850e-47 |
| Msa0396880 | Msa1328680 | -0.809855 | 1.539518e-50 | -8.615850e-47 |
| Msa0396880 | Msa1334000 | 0.800910 | 1.154620e-48 | -8.615850e-47 |
| Msa0396880 | Msa1381300 | -0.826478 | 2.653535e-54 | -8.615850e-47 |
| Msa0396880 | Msa1386910 | -0.808791 | 2.603237e-50 | -8.615850e-47 |
| Msa0396880 | Msa1395200 | -0.808149 | 3.568902e-50 | -8.615850e-47 |
| Msa0396880 | Msa1405530 | 0.825924 | 3.595721e-54 | -8.615850e-47 |
| Msa0396880 | Msa1438160 | 0.828920 | 6.873577e-55 | -8.615850e-47 |
| Msa0396880 | Msa1442200 | 0.812903 | 3.354380e-51 | -8.615850e-47 |
| Msa0396880 | Msa1451200 | -0.814890 | 1.223594e-51 | -8.615850e-47 |
| Msa0396880 | Msa1453890 | 0.808228 | 3.433952e-50 | -8.615850e-47 |
| Msa0396880 | Msa1459920 | 0.805718 | 1.165909e-49 | -8.615850e-47 |
| Msa0396880 | Msa1462610 | 0.804948 | 1.690807e-49 | -8.615850e-47 |
| Msa0242720 | Msa0396880 | 0.816880 | 4.401669e-52 | -8.615850e-47 |
| Msa0261020 | Msa0396880 | -0.813987 | 1.937698e-51 | -8.615850e-47 |
| Msa0267900 | Msa0396880 | 0.827147 | 1.836605e-54 | -8.615850e-47 |
| Msa0269710 | Msa0396880 | 0.809690 | 1.670835e-50 | -8.615850e-47 |
| Msa0271700 | Msa0396880 | 0.850232 | 1.939969e-60 | -8.615850e-47 |
| Msa0271720 | Msa0396880 | 0.846146 | 2.608248e-59 | -8.615850e-47 |
| Msa0275390 | Msa0396880 | 0.812739 | 3.642680e-51 | -8.615850e-47 |
| Msa0275730 | Msa0396880 | 0.823425 | 1.394474e-53 | -8.615850e-47 |
| Msa0285890 | Msa0396880 | 0.831290 | 1.814872e-55 | -8.615850e-47 |
| Msa0287480 | Msa0396880 | 0.804727 | 1.880537e-49 | -8.615850e-47 |
| Msa0294200 | Msa0396880 | 0.810523 | 1.105108e-50 | -8.615850e-47 |
| Msa0307630 | Msa0396880 | 0.806027 | 1.003928e-49 | -8.615850e-47 |
| Msa0314240 | Msa0396880 | 0.810050 | 1.397881e-50 | -8.615850e-47 |
| Msa0319680 | Msa0396880 | 0.801559 | 8.504021e-49 | -8.615850e-47 |
| Msa0320170 | Msa0396880 | 0.817966 | 2.507040e-52 | -8.615850e-47 |
| Msa0324810 | Msa0396880 | 0.835231 | 1.893045e-56 | -8.615850e-47 |
| Msa0336550 | Msa0396880 | -0.800452 | 1.431483e-48 | -8.615850e-47 |
| Msa0345890 | Msa0396880 | 0.817753 | 2.799511e-52 | -8.615850e-47 |
| Msa0346170 | Msa0396880 | 0.805483 | 1.306225e-49 | -8.615850e-47 |
| Msa0348460 | Msa0396880 | 0.803176 | 3.950277e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396880 | MtrunA17_Chr3g0084201 | 96.825 | 189 | 6 | 0 | 1 | 189 | 1 | 189 | 3.07e-134 | 373 |
| Msa0396880 | MtrunA17_Chr3g0084221 | 83.158 | 190 | 31 | 1 | 1 | 189 | 1 | 190 | 8.32e-114 | 322 |
| Msa0396880 | MtrunA17_Chr3g0084161 | 73.158 | 190 | 50 | 1 | 1 | 189 | 1 | 190 | 2.25e-102 | 293 |
| Msa0396880 | MtrunA17_Chr8g0353131 | 71.429 | 189 | 53 | 1 | 2 | 189 | 3 | 191 | 1.20e-100 | 288 |
| Msa0396880 | MtrunA17_Chr3g0084191 | 68.229 | 192 | 57 | 1 | 1 | 188 | 1 | 192 | 1.72e-91 | 276 |
| Msa0396880 | MtrunA17_Chr3g0082411 | 60.317 | 63 | 20 | 1 | 49 | 106 | 1 | 63 | 6.53e-20 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396880 | AT3G27890.1 | 72.727 | 187 | 50 | 1 | 4 | 189 | 10 | 196 | 4.23e-94 | 272 |
Find 46 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAATTATTCTGTTTC+AGG | 0.095784 | 3_2:+15726039 | Msa0396880:CDS |
| ATTAAGGTTGCTGCACTTTC+TGG | 0.101546 | 3_2:+15725689 | Msa0396880:CDS |
| GAATTTCACTCCATTCCTTT+TGG | 0.287992 | 3_2:+15727483 | Msa0396880:three_prime_UTR |
| CGAAAGGATTCAACTTCAAT+TGG | 0.311303 | 3_2:-15725973 | None:intergenic |
| CAACATGGCTGGGATAATTA+AGG | 0.328930 | 3_2:+15725673 | Msa0396880:exon |
| CATCAAGATCACCAAATGTT+TGG | 0.330789 | 3_2:+15727159 | Msa0396880:CDS |
| TTTATTTACATGGTTGCATC+TGG | 0.346152 | 3_2:+15727571 | Msa0396880:three_prime_UTR |
| GGTTTACCAGCCCAAACATT+TGG | 0.362348 | 3_2:-15727170 | None:intergenic |
| CAATTGAAGTTGAATCCTTT+CGG | 0.366586 | 3_2:+15725974 | Msa0396880:CDS |
| AATTGCCAACAACCTCTTCC+TGG | 0.368394 | 3_2:-15727366 | None:intergenic |
| CAGTCAAGTGCATTCTTTAG+TGG | 0.388337 | 3_2:-15727134 | None:intergenic |
| TTTATTTATTATGTTGAAGT+TGG | 0.389335 | 3_2:+15727598 | Msa0396880:three_prime_UTR |
| GGCAATTCTTCTATCCTTGA+AGG | 0.402632 | 3_2:+15727382 | Msa0396880:CDS |
| ATCAAGATCACCAAATGTTT+GGG | 0.414288 | 3_2:+15727160 | Msa0396880:CDS |
| TTGCAGAGTAAATGCCTTCA+AGG | 0.424288 | 3_2:-15727396 | None:intergenic |
| GCATTTACTCTGCAACTTCA+AGG | 0.438426 | 3_2:+15727404 | Msa0396880:CDS |
| ATTCAATAAAACAACATGGC+TGG | 0.441889 | 3_2:+15725662 | Msa0396880:exon |
| GTATTTGTTCTTTATTTACA+TGG | 0.444321 | 3_2:+15727561 | Msa0396880:three_prime_UTR |
| CACTAAAGAATGCACTTGAC+TGG | 0.447734 | 3_2:+15727135 | Msa0396880:CDS |
| TTTCTACATGACATTCCAAA+AGG | 0.481034 | 3_2:-15727498 | None:intergenic |
| CAATATCATCTCCGACAAAT+CGG | 0.490712 | 3_2:+15727239 | Msa0396880:CDS |
| AACACTGATCTTGAGAAAGA+AGG | 0.494409 | 3_2:+15725943 | Msa0396880:CDS |
| AACACTGGTCTCATCCGTTC+TGG | 0.496937 | 3_2:+15725734 | Msa0396880:CDS |
| TTCAATAAAACAACATGGCT+GGG | 0.502989 | 3_2:+15725663 | Msa0396880:exon |
| CGAGGAAAACTCCGATTTGT+CGG | 0.523747 | 3_2:-15727250 | None:intergenic |
| CCAGCAAAATTTAATAGTGA+TGG | 0.525979 | 3_2:+15727323 | Msa0396880:CDS |
| ACACTGATCTTGAGAAAGAA+GGG | 0.529151 | 3_2:+15725944 | Msa0396880:CDS |
| AGATGCCAGGAAGAGGTTGT+TGG | 0.532695 | 3_2:+15727361 | Msa0396880:CDS |
| CCTGCGGCAATAGTGAGTGC+TGG | 0.540058 | 3_2:+15727191 | Msa0396880:CDS |
| CCAGCACTCACTATTGCCGC+AGG | 0.543014 | 3_2:-15727191 | None:intergenic |
| AGATCACCAAATGTTTGGGC+TGG | 0.543332 | 3_2:+15727164 | Msa0396880:CDS |
| ACATGACATTCCAAAAGGAA+TGG | 0.554659 | 3_2:-15727493 | None:intergenic |
| ATTTGATTGATGAAGATGCC+AGG | 0.580475 | 3_2:+15727348 | Msa0396880:CDS |
| ACTAAAGAATGCACTTGACT+GGG | 0.582016 | 3_2:+15727136 | Msa0396880:CDS |
| TCAAGATCAGTGTTCAACAT+TGG | 0.585501 | 3_2:-15725934 | None:intergenic |
| TATTGATGAAATGAAGATCG+AGG | 0.585645 | 3_2:-15727268 | None:intergenic |
| GTGAGTGCTGGAGGAGGACA+TGG | 0.596944 | 3_2:+15727203 | Msa0396880:CDS |
| GCAATAGTGAGTGCTGGAGG+AGG | 0.597133 | 3_2:+15727197 | Msa0396880:CDS |
| TTGATGAAGATGCCAGGAAG+AGG | 0.606155 | 3_2:+15727354 | Msa0396880:CDS |
| CGAAAAGCTTCTTACAACAC+TGG | 0.614227 | 3_2:+15725719 | Msa0396880:CDS |
| GGCAAATATTGAAACAACTG+AGG | 0.653423 | 3_2:+15727425 | Msa0396880:exon |
| GAAGTAGGAACCTACCAGAA+CGG | 0.655408 | 3_2:-15725748 | None:intergenic |
| GCGGCAATAGTGAGTGCTGG+AGG | 0.656496 | 3_2:+15727194 | Msa0396880:CDS |
| TGTTTGGGCTGGTAAACCTG+CGG | 0.686432 | 3_2:+15727175 | Msa0396880:CDS |
| ATTGATTCAATAAAACAACA+TGG | 0.704117 | 3_2:+15725658 | Msa0396880:exon |
| AGTGCTGGAGGAGGACATGG+TGG | 0.705715 | 3_2:+15727206 | Msa0396880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAAAATTTTCACTTT+TGG | - | chr3_2:15726138-15726157 | None:intergenic | 10.0% |
| !! | AAAGAAAAGATAAATATAAA+AGG | - | chr3_2:15726326-15726345 | None:intergenic | 10.0% |
| !!! | ATATTTATCTTTTCTTTTTT+AGG | + | chr3_2:15726329-15726348 | Msa0396880:intron | 10.0% |
| !!! | TATTTATCTTTTCTTTTTTA+GGG | + | chr3_2:15726330-15726349 | Msa0396880:intron | 10.0% |
| !! | ATCTTATATTATATTACATA+TGG | - | chr3_2:15726495-15726514 | None:intergenic | 10.0% |
| !!! | TTATTTAAAATTTTCACTTT+TGG | - | chr3_2:15726138-15726157 | None:intergenic | 10.0% |
| !! | AAAGAAAAGATAAATATAAA+AGG | - | chr3_2:15726326-15726345 | None:intergenic | 10.0% |
| !!! | ATATTTATCTTTTCTTTTTT+AGG | + | chr3_2:15726329-15726348 | Msa0396880:intron | 10.0% |
| !!! | TATTTATCTTTTCTTTTTTA+GGG | + | chr3_2:15726330-15726349 | Msa0396880:intron | 10.0% |
| !! | ATCTTATATTATATTACATA+TGG | - | chr3_2:15726495-15726514 | None:intergenic | 10.0% |
| !!! | AAAATAAAAAAAAGTGTTTG+TGG | - | chr3_2:15725777-15725796 | None:intergenic | 15.0% |
| !!! | GATACATAATTATTTTTTTG+AGG | + | chr3_2:15725806-15725825 | Msa0396880:intron | 15.0% |
| !! | TTGTTTACGATAAATATAAA+AGG | - | chr3_2:15726360-15726379 | None:intergenic | 15.0% |
| !! | TTATTTATAAAATGGCATTA+TGG | + | chr3_2:15726441-15726460 | Msa0396880:intron | 15.0% |
| !!! | TAACAAGTCAATTTTTTTTT+GGG | - | chr3_2:15726569-15726588 | None:intergenic | 15.0% |
| !!! | TTAACAAGTCAATTTTTTTT+TGG | - | chr3_2:15726570-15726589 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15726828-15726847 | Msa0396880:intron | 15.0% |
| !! | ACAATATATTAGAAAACTAT+AGG | - | chr3_2:15727094-15727113 | None:intergenic | 15.0% |
| !! | TTTATTTATTATGTTGAAGT+TGG | + | chr3_2:15727598-15727617 | Msa0396880:three_prime_UTR | 15.0% |
| !!! | AAAATAAAAAAAAGTGTTTG+TGG | - | chr3_2:15725777-15725796 | None:intergenic | 15.0% |
| !!! | GATACATAATTATTTTTTTG+AGG | + | chr3_2:15725806-15725825 | Msa0396880:intron | 15.0% |
| !! | TTGTTTACGATAAATATAAA+AGG | - | chr3_2:15726360-15726379 | None:intergenic | 15.0% |
| !! | TTATTTATAAAATGGCATTA+TGG | + | chr3_2:15726441-15726460 | Msa0396880:intron | 15.0% |
| !!! | TAACAAGTCAATTTTTTTTT+GGG | - | chr3_2:15726569-15726588 | None:intergenic | 15.0% |
| !!! | TTAACAAGTCAATTTTTTTT+TGG | - | chr3_2:15726570-15726589 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15726828-15726847 | Msa0396880:intron | 15.0% |
| !! | ACAATATATTAGAAAACTAT+AGG | - | chr3_2:15727094-15727113 | None:intergenic | 15.0% |
| !! | TTTATTTATTATGTTGAAGT+TGG | + | chr3_2:15727598-15727617 | Msa0396880:three_prime_UTR | 15.0% |
| !!! | ATTGATTCAATAAAACAACA+TGG | + | chr3_2:15725658-15725677 | Msa0396880:exon | 20.0% |
| !!! | ACATAATTATTTTTTTGAGG+AGG | + | chr3_2:15725809-15725828 | Msa0396880:intron | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15726039-15726058 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15726039-15726058 | Msa0396880:CDS | 20.0% |
| !! | GTCAAAAGTTAAAAAGAAAA+GGG | - | chr3_2:15726268-15726287 | None:intergenic | 20.0% |
| !! | TGTCAAAAGTTAAAAAGAAA+AGG | - | chr3_2:15726269-15726288 | None:intergenic | 20.0% |
| !!! | TATATGTCAAAATTTTGTCA+TGG | + | chr3_2:15726620-15726639 | Msa0396880:intron | 20.0% |
| !! | GTCATTGCTAAAATATAAAT+AGG | + | chr3_2:15726850-15726869 | Msa0396880:intron | 20.0% |
| !! | GTTCAAAAACTACATATAAA+CGG | + | chr3_2:15726878-15726897 | Msa0396880:intron | 20.0% |
| !!! | GTATTTGTTCTTTATTTACA+TGG | + | chr3_2:15727561-15727580 | Msa0396880:three_prime_UTR | 20.0% |
| !!! | ATTGATTCAATAAAACAACA+TGG | + | chr3_2:15725658-15725677 | Msa0396880:exon | 20.0% |
| !!! | ACATAATTATTTTTTTGAGG+AGG | + | chr3_2:15725809-15725828 | Msa0396880:intron | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15726039-15726058 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15726039-15726058 | Msa0396880:CDS | 20.0% |
| !! | GTCAAAAGTTAAAAAGAAAA+GGG | - | chr3_2:15726268-15726287 | None:intergenic | 20.0% |
| !! | TGTCAAAAGTTAAAAAGAAA+AGG | - | chr3_2:15726269-15726288 | None:intergenic | 20.0% |
| !!! | TATATGTCAAAATTTTGTCA+TGG | + | chr3_2:15726620-15726639 | Msa0396880:intron | 20.0% |
| !! | GTCATTGCTAAAATATAAAT+AGG | + | chr3_2:15726850-15726869 | Msa0396880:intron | 20.0% |
| !! | GTTCAAAAACTACATATAAA+CGG | + | chr3_2:15726878-15726897 | Msa0396880:intron | 20.0% |
| !!! | GTATTTGTTCTTTATTTACA+TGG | + | chr3_2:15727561-15727580 | Msa0396880:three_prime_UTR | 20.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_2:15726043-15726062 | Msa0396880:intron | 25.0% |
| !!! | TGTATTTTTCTTTTGAGTCT+TGG | + | chr3_2:15726095-15726114 | Msa0396880:intron | 25.0% |
| !!! | GTATTTTTCTTTTGAGTCTT+GGG | + | chr3_2:15726096-15726115 | Msa0396880:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15726683-15726702 | Msa0396880:intron | 25.0% |
| ! | AAACTATAGGCTTATATGTT+TGG | - | chr3_2:15727081-15727100 | None:intergenic | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15727296-15727315 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_2:15726043-15726062 | Msa0396880:intron | 25.0% |
| !!! | TGTATTTTTCTTTTGAGTCT+TGG | + | chr3_2:15726095-15726114 | Msa0396880:intron | 25.0% |
| !!! | GTATTTTTCTTTTGAGTCTT+GGG | + | chr3_2:15726096-15726115 | Msa0396880:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15726683-15726702 | Msa0396880:intron | 25.0% |
| ! | AAACTATAGGCTTATATGTT+TGG | - | chr3_2:15727081-15727100 | None:intergenic | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15727296-15727315 | None:intergenic | 25.0% |
| ATTCAATAAAACAACATGGC+TGG | + | chr3_2:15725662-15725681 | Msa0396880:exon | 30.0% | |
| TTCAATAAAACAACATGGCT+GGG | + | chr3_2:15725663-15725682 | Msa0396880:exon | 30.0% | |
| CAATTGAAGTTGAATCCTTT+CGG | + | chr3_2:15725974-15725993 | Msa0396880:CDS | 30.0% | |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15726468-15726487 | Msa0396880:intron | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15726682-15726701 | Msa0396880:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+CGG | + | chr3_2:15726939-15726958 | Msa0396880:intron | 30.0% |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15727160-15727179 | Msa0396880:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15727271-15727290 | None:intergenic | 30.0% | |
| ! | TCACTATTAAATTTTGCTGG+AGG | - | chr3_2:15727323-15727342 | None:intergenic | 30.0% |
| ! | CCATCACTATTAAATTTTGC+TGG | - | chr3_2:15727326-15727345 | None:intergenic | 30.0% |
| CCAGCAAAATTTAATAGTGA+TGG | + | chr3_2:15727323-15727342 | Msa0396880:CDS | 30.0% | |
| TTTCTACATGACATTCCAAA+AGG | - | chr3_2:15727501-15727520 | None:intergenic | 30.0% | |
| TTTATTTACATGGTTGCATC+TGG | + | chr3_2:15727571-15727590 | Msa0396880:three_prime_UTR | 30.0% | |
| ATTCAATAAAACAACATGGC+TGG | + | chr3_2:15725662-15725681 | Msa0396880:exon | 30.0% | |
| TTCAATAAAACAACATGGCT+GGG | + | chr3_2:15725663-15725682 | Msa0396880:exon | 30.0% | |
| CAATTGAAGTTGAATCCTTT+CGG | + | chr3_2:15725974-15725993 | Msa0396880:CDS | 30.0% | |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15726468-15726487 | Msa0396880:intron | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15726682-15726701 | Msa0396880:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+CGG | + | chr3_2:15726939-15726958 | Msa0396880:intron | 30.0% |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15727160-15727179 | Msa0396880:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15727271-15727290 | None:intergenic | 30.0% | |
| ! | TCACTATTAAATTTTGCTGG+AGG | - | chr3_2:15727323-15727342 | None:intergenic | 30.0% |
| ! | CCATCACTATTAAATTTTGC+TGG | - | chr3_2:15727326-15727345 | None:intergenic | 30.0% |
| CCAGCAAAATTTAATAGTGA+TGG | + | chr3_2:15727323-15727342 | Msa0396880:CDS | 30.0% | |
| TTTCTACATGACATTCCAAA+AGG | - | chr3_2:15727501-15727520 | None:intergenic | 30.0% | |
| TTTATTTACATGGTTGCATC+TGG | + | chr3_2:15727571-15727590 | Msa0396880:three_prime_UTR | 30.0% | |
| ! | CAGTGTTGTAAGAAGCTTTT+CGG | - | chr3_2:15725721-15725740 | None:intergenic | 35.0% |
| AAGTGTTTGTGGTAAGAAGT+AGG | - | chr3_2:15725766-15725785 | None:intergenic | 35.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15725876-15725895 | Msa0396880:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15725877-15725896 | Msa0396880:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15725937-15725956 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_2:15725943-15725962 | Msa0396880:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_2:15725944-15725963 | Msa0396880:CDS | 35.0% | |
| CGAAAGGATTCAACTTCAAT+TGG | - | chr3_2:15725976-15725995 | None:intergenic | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15725988-15726007 | Msa0396880:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15725992-15726011 | None:intergenic | 35.0% |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_2:15726055-15726074 | Msa0396880:intron | 35.0% |
| CAAACAAAAATGTCAGCACT+CGG | + | chr3_2:15726377-15726396 | Msa0396880:intron | 35.0% | |
| AAACAAAAATGTCAGCACTC+GGG | + | chr3_2:15726378-15726397 | Msa0396880:intron | 35.0% | |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15726679-15726698 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15727054-15727073 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_2:15727136-15727155 | Msa0396880:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15727159-15727178 | Msa0396880:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15727239-15727258 | Msa0396880:CDS | 35.0% | |
| ATTTGATTGATGAAGATGCC+AGG | + | chr3_2:15727348-15727367 | Msa0396880:CDS | 35.0% | |
| GGCAAATATTGAAACAACTG+AGG | + | chr3_2:15727425-15727444 | Msa0396880:exon | 35.0% | |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_2:15727483-15727502 | Msa0396880:three_prime_UTR | 35.0% |
| ACATGACATTCCAAAAGGAA+TGG | - | chr3_2:15727496-15727515 | None:intergenic | 35.0% | |
| ! | CAGTGTTGTAAGAAGCTTTT+CGG | - | chr3_2:15725721-15725740 | None:intergenic | 35.0% |
| AAGTGTTTGTGGTAAGAAGT+AGG | - | chr3_2:15725766-15725785 | None:intergenic | 35.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15725876-15725895 | Msa0396880:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15725877-15725896 | Msa0396880:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15725937-15725956 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_2:15725943-15725962 | Msa0396880:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_2:15725944-15725963 | Msa0396880:CDS | 35.0% | |
| CGAAAGGATTCAACTTCAAT+TGG | - | chr3_2:15725976-15725995 | None:intergenic | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15725988-15726007 | Msa0396880:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15725992-15726011 | None:intergenic | 35.0% |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_2:15726055-15726074 | Msa0396880:intron | 35.0% |
| CAAACAAAAATGTCAGCACT+CGG | + | chr3_2:15726377-15726396 | Msa0396880:intron | 35.0% | |
| AAACAAAAATGTCAGCACTC+GGG | + | chr3_2:15726378-15726397 | Msa0396880:intron | 35.0% | |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15726679-15726698 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15727054-15727073 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_2:15727136-15727155 | Msa0396880:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15727159-15727178 | Msa0396880:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15727239-15727258 | Msa0396880:CDS | 35.0% | |
| ATTTGATTGATGAAGATGCC+AGG | + | chr3_2:15727348-15727367 | Msa0396880:CDS | 35.0% | |
| GGCAAATATTGAAACAACTG+AGG | + | chr3_2:15727425-15727444 | Msa0396880:exon | 35.0% | |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_2:15727483-15727502 | Msa0396880:three_prime_UTR | 35.0% |
| ACATGACATTCCAAAAGGAA+TGG | - | chr3_2:15727496-15727515 | None:intergenic | 35.0% | |
| CAACATGGCTGGGATAATTA+AGG | + | chr3_2:15725673-15725692 | Msa0396880:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15725689-15725708 | Msa0396880:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15725719-15725738 | Msa0396880:CDS | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_2:15726082-15726101 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_2:15726083-15726102 | None:intergenic | 40.0% | |
| !!! | CTGTCGTTTGACTTTTTCAG+TGG | + | chr3_2:15726905-15726924 | Msa0396880:intron | 40.0% |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_2:15727137-15727156 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_2:15727135-15727154 | Msa0396880:CDS | 40.0% | |
| GGCAATTCTTCTATCCTTGA+AGG | + | chr3_2:15727382-15727401 | Msa0396880:CDS | 40.0% | |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15727399-15727418 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15727404-15727423 | Msa0396880:CDS | 40.0% | |
| CAACATGGCTGGGATAATTA+AGG | + | chr3_2:15725673-15725692 | Msa0396880:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15725689-15725708 | Msa0396880:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15725719-15725738 | Msa0396880:CDS | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_2:15726082-15726101 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_2:15726083-15726102 | None:intergenic | 40.0% | |
| !!! | CTGTCGTTTGACTTTTTCAG+TGG | + | chr3_2:15726905-15726924 | Msa0396880:intron | 40.0% |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_2:15727137-15727156 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_2:15727135-15727154 | Msa0396880:CDS | 40.0% | |
| GGCAATTCTTCTATCCTTGA+AGG | + | chr3_2:15727382-15727401 | Msa0396880:CDS | 40.0% | |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15727399-15727418 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15727404-15727423 | Msa0396880:CDS | 40.0% | |
| GAAGTAGGAACCTACCAGAA+CGG | - | chr3_2:15725751-15725770 | None:intergenic | 45.0% | |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_2:15726065-15726084 | Msa0396880:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_2:15726066-15726085 | Msa0396880:intron | 45.0% | |
| !! | TCTTTTGAGTCTTGGGACAC+TGG | + | chr3_2:15726103-15726122 | Msa0396880:intron | 45.0% |
| ACATGTTAACCAATGCTCCG+GGG | - | chr3_2:15726245-15726264 | None:intergenic | 45.0% | |
| GACATGTTAACCAATGCTCC+GGG | - | chr3_2:15726246-15726265 | None:intergenic | 45.0% | |
| GGACATGTTAACCAATGCTC+CGG | - | chr3_2:15726247-15726266 | None:intergenic | 45.0% | |
| CAACGACAGTTAATTGCCAC+CGG | + | chr3_2:15727012-15727031 | Msa0396880:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15727051-15727070 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15727164-15727183 | Msa0396880:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15727173-15727192 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15727253-15727272 | None:intergenic | 45.0% |
| TTGATGAAGATGCCAGGAAG+AGG | + | chr3_2:15727354-15727373 | Msa0396880:CDS | 45.0% | |
| AATTGCCAACAACCTCTTCC+TGG | - | chr3_2:15727369-15727388 | None:intergenic | 45.0% | |
| GAAGTAGGAACCTACCAGAA+CGG | - | chr3_2:15725751-15725770 | None:intergenic | 45.0% | |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_2:15726065-15726084 | Msa0396880:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_2:15726066-15726085 | Msa0396880:intron | 45.0% | |
| !! | TCTTTTGAGTCTTGGGACAC+TGG | + | chr3_2:15726103-15726122 | Msa0396880:intron | 45.0% |
| ACATGTTAACCAATGCTCCG+GGG | - | chr3_2:15726245-15726264 | None:intergenic | 45.0% | |
| GACATGTTAACCAATGCTCC+GGG | - | chr3_2:15726246-15726265 | None:intergenic | 45.0% | |
| GGACATGTTAACCAATGCTC+CGG | - | chr3_2:15726247-15726266 | None:intergenic | 45.0% | |
| CAACGACAGTTAATTGCCAC+CGG | + | chr3_2:15727012-15727031 | Msa0396880:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15727051-15727070 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15727164-15727183 | Msa0396880:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15727173-15727192 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15727253-15727272 | None:intergenic | 45.0% |
| TTGATGAAGATGCCAGGAAG+AGG | + | chr3_2:15727354-15727373 | Msa0396880:CDS | 45.0% | |
| AATTGCCAACAACCTCTTCC+TGG | - | chr3_2:15727369-15727388 | None:intergenic | 45.0% | |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15726433-15726452 | Msa0396880:intron | 5.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15726433-15726452 | Msa0396880:intron | 5.0% |
| ! | AACACTGGTCTCATCCGTTC+TGG | + | chr3_2:15725734-15725753 | Msa0396880:CDS | 50.0% |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_2:15726064-15726083 | Msa0396880:intron | 50.0% | |
| ! | GAGTCTTGGGACACTGGTTA+AGG | + | chr3_2:15726109-15726128 | Msa0396880:intron | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15727175-15727194 | Msa0396880:CDS | 50.0% |
| AGATGCCAGGAAGAGGTTGT+TGG | + | chr3_2:15727361-15727380 | Msa0396880:CDS | 50.0% | |
| ! | AACACTGGTCTCATCCGTTC+TGG | + | chr3_2:15725734-15725753 | Msa0396880:CDS | 50.0% |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_2:15726064-15726083 | Msa0396880:intron | 50.0% | |
| ! | GAGTCTTGGGACACTGGTTA+AGG | + | chr3_2:15726109-15726128 | Msa0396880:intron | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15727175-15727194 | Msa0396880:CDS | 50.0% |
| AGATGCCAGGAAGAGGTTGT+TGG | + | chr3_2:15727361-15727380 | Msa0396880:CDS | 50.0% | |
| CTGGTCTCATCCGTTCTGGT+AGG | + | chr3_2:15725738-15725757 | Msa0396880:intron | 55.0% | |
| TGACTCCTTAACCAGTGCCC+CGG | + | chr3_2:15726225-15726244 | Msa0396880:intron | 55.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGG+TGG | - | chr3_2:15727031-15727050 | None:intergenic | 55.0% |
| !!! | CGGCGGTCGTTTAGCTTTTC+CGG | - | chr3_2:15727034-15727053 | None:intergenic | 55.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15727036-15727055 | Msa0396880:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15727037-15727056 | Msa0396880:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15727197-15727216 | Msa0396880:CDS | 55.0% |
| CTGGTCTCATCCGTTCTGGT+AGG | + | chr3_2:15725738-15725757 | Msa0396880:intron | 55.0% | |
| TGACTCCTTAACCAGTGCCC+CGG | + | chr3_2:15726225-15726244 | Msa0396880:intron | 55.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGG+TGG | - | chr3_2:15727031-15727050 | None:intergenic | 55.0% |
| !!! | CGGCGGTCGTTTAGCTTTTC+CGG | - | chr3_2:15727034-15727053 | None:intergenic | 55.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15727036-15727055 | Msa0396880:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15727037-15727056 | Msa0396880:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15727197-15727216 | Msa0396880:CDS | 55.0% |
| !! | ATGCTCCGGGGCACTGGTTA+AGG | - | chr3_2:15726233-15726252 | None:intergenic | 60.0% |
| TAACCAGTGCCCCGGAGCAT+TGG | + | chr3_2:15726233-15726252 | Msa0396880:intron | 60.0% | |
| TAACCAATGCTCCGGGGCAC+TGG | - | chr3_2:15726239-15726258 | None:intergenic | 60.0% | |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15727194-15727213 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15727191-15727210 | Msa0396880:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15727194-15727213 | Msa0396880:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15727203-15727222 | Msa0396880:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15727206-15727225 | Msa0396880:CDS | 60.0% |
| !! | ATGCTCCGGGGCACTGGTTA+AGG | - | chr3_2:15726233-15726252 | None:intergenic | 60.0% |
| TAACCAGTGCCCCGGAGCAT+TGG | + | chr3_2:15726233-15726252 | Msa0396880:intron | 60.0% | |
| TAACCAATGCTCCGGGGCAC+TGG | - | chr3_2:15726239-15726258 | None:intergenic | 60.0% | |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15727194-15727213 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15727191-15727210 | Msa0396880:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15727194-15727213 | Msa0396880:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15727203-15727222 | Msa0396880:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15727206-15727225 | Msa0396880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15725613 | 15727631 | 15725613 | ID=Msa0396880;Name=Msa0396880 |
| chr3_2 | mRNA | 15725613 | 15727631 | 15725613 | ID=Msa0396880-mRNA-1;Parent=Msa0396880;Name=Msa0396880-mRNA-1;_AED=0.35;_eAED=0.35;_QI=64|1|0.66|1|1|1|3|195|190 |
| chr3_2 | exon | 15725613 | 15725755 | 15725613 | ID=Msa0396880-mRNA-1:exon:3525;Parent=Msa0396880-mRNA-1 |
| chr3_2 | exon | 15725872 | 15726060 | 15725872 | ID=Msa0396880-mRNA-1:exon:3526;Parent=Msa0396880-mRNA-1 |
| chr3_2 | exon | 15727132 | 15727631 | 15727132 | ID=Msa0396880-mRNA-1:exon:3527;Parent=Msa0396880-mRNA-1 |
| chr3_2 | five_prime_UTR | 15725613 | 15725676 | 15725613 | ID=Msa0396880-mRNA-1:five_prime_utr;Parent=Msa0396880-mRNA-1 |
| chr3_2 | CDS | 15725677 | 15725755 | 15725677 | ID=Msa0396880-mRNA-1:cds;Parent=Msa0396880-mRNA-1 |
| chr3_2 | CDS | 15725872 | 15726060 | 15725872 | ID=Msa0396880-mRNA-1:cds;Parent=Msa0396880-mRNA-1 |
| chr3_2 | CDS | 15727132 | 15727436 | 15727132 | ID=Msa0396880-mRNA-1:cds;Parent=Msa0396880-mRNA-1 |
| chr3_2 | three_prime_UTR | 15727437 | 15727631 | 15727437 | ID=Msa0396880-mRNA-1:three_prime_utr;Parent=Msa0396880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
