Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396870 | XP_003598676.1 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 4.23e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396870 | sp|Q9LK88|NQR_ARATH | 72.193 | 187 | 51 | 1 | 4 | 189 | 10 | 196 | 3.02e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396870 | G7IW38 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 2.02e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011040 | Msa0396870 | 0.803764 | 2.982655e-49 | -8.615850e-47 |
| Msa0013270 | Msa0396870 | 0.804766 | 1.845272e-49 | -8.615850e-47 |
| Msa0032770 | Msa0396870 | 0.801329 | 9.477018e-49 | -8.615850e-47 |
| Msa0059420 | Msa0396870 | 0.817259 | 3.618266e-52 | -8.615850e-47 |
| Msa0059880 | Msa0396870 | 0.804708 | 1.897776e-49 | -8.615850e-47 |
| Msa0064990 | Msa0396870 | 0.806103 | 9.677134e-50 | -8.615850e-47 |
| Msa0078160 | Msa0396870 | -0.825158 | 5.458801e-54 | -8.615850e-47 |
| Msa0078170 | Msa0396870 | -0.806871 | 6.663900e-50 | -8.615850e-47 |
| Msa0102920 | Msa0396870 | 0.806003 | 1.015829e-49 | -8.615850e-47 |
| Msa0107830 | Msa0396870 | 0.853516 | 2.269215e-61 | -8.615850e-47 |
| Msa0121320 | Msa0396870 | 0.820109 | 8.160638e-53 | -8.615850e-47 |
| Msa0143830 | Msa0396870 | 0.820237 | 7.628392e-53 | -8.615850e-47 |
| Msa0150640 | Msa0396870 | 0.800638 | 1.312169e-48 | -8.615850e-47 |
| Msa0150910 | Msa0396870 | 0.809509 | 1.827014e-50 | -8.615850e-47 |
| Msa0166180 | Msa0396870 | 0.815675 | 8.187574e-52 | -8.615850e-47 |
| Msa0185040 | Msa0396870 | 0.801918 | 7.177567e-49 | -8.615850e-47 |
| Msa0196260 | Msa0396870 | 0.817307 | 3.530141e-52 | -8.615850e-47 |
| Msa0200090 | Msa0396870 | 0.818648 | 1.756423e-52 | -8.615850e-47 |
| Msa0210790 | Msa0396870 | 0.806631 | 7.491085e-50 | -8.615850e-47 |
| Msa0210850 | Msa0396870 | 0.804479 | 2.118400e-49 | -8.615850e-47 |
| Msa0211460 | Msa0396870 | 0.800784 | 1.225006e-48 | -8.615850e-47 |
| Msa0236690 | Msa0396870 | -0.803332 | 3.666033e-49 | -8.615850e-47 |
| Msa0238140 | Msa0396870 | 0.807911 | 4.010991e-50 | -8.615850e-47 |
| Msa0238330 | Msa0396870 | 0.802457 | 5.559983e-49 | -8.615850e-47 |
| Msa0364910 | Msa0396870 | -0.809649 | 1.705000e-50 | -8.615850e-47 |
| Msa0367600 | Msa0396870 | -0.800761 | 1.238169e-48 | -8.615850e-47 |
| Msa0390200 | Msa0396870 | 0.853607 | 2.137481e-61 | -8.615850e-47 |
| Msa0396790 | Msa0396870 | 0.802238 | 6.167090e-49 | -8.615850e-47 |
| Msa0396810 | Msa0396870 | 0.813072 | 3.079435e-51 | -8.615850e-47 |
| Msa0396870 | Msa0396880 | 0.848375 | 6.382006e-60 | -8.615850e-47 |
| Msa0396870 | Msa0405210 | 0.801239 | 9.888419e-49 | -8.615850e-47 |
| Msa0396870 | Msa0415010 | 0.810137 | 1.338328e-50 | -8.615850e-47 |
| Msa0396870 | Msa0415210 | -0.806981 | 6.316393e-50 | -8.615850e-47 |
| Msa0396870 | Msa0441750 | 0.842896 | 1.954693e-58 | -8.615850e-47 |
| Msa0396870 | Msa0444380 | 0.811329 | 7.392485e-51 | -8.615850e-47 |
| Msa0396870 | Msa0489370 | 0.843416 | 1.420437e-58 | -8.615850e-47 |
| Msa0396870 | Msa0491980 | 0.814632 | 1.395582e-51 | -8.615850e-47 |
| Msa0396870 | Msa0493870 | 0.812815 | 3.505671e-51 | -8.615850e-47 |
| Msa0396870 | Msa0508160 | 0.800298 | 1.539176e-48 | -8.615850e-47 |
| Msa0396870 | Msa0510870 | 0.818334 | 2.069865e-52 | -8.615850e-47 |
| Msa0396870 | Msa0531050 | 0.821906 | 3.146311e-53 | -8.615850e-47 |
| Msa0396870 | Msa0546760 | 0.800936 | 1.140495e-48 | -8.615850e-47 |
| Msa0396870 | Msa0561830 | 0.833222 | 6.037562e-56 | -8.615850e-47 |
| Msa0396870 | Msa0566530 | 0.813099 | 3.038114e-51 | -8.615850e-47 |
| Msa0396870 | Msa0567570 | 0.801095 | 1.058387e-48 | -8.615850e-47 |
| Msa0396870 | Msa0580840 | 0.802702 | 4.948275e-49 | -8.615850e-47 |
| Msa0396870 | Msa0588040 | 0.821864 | 3.217563e-53 | -8.615850e-47 |
| Msa0396870 | Msa0597370 | -0.812188 | 4.808338e-51 | -8.615850e-47 |
| Msa0396870 | Msa0597820 | 0.803009 | 4.277110e-49 | -8.615850e-47 |
| Msa0396870 | Msa0601400 | 0.818204 | 2.214960e-52 | -8.615850e-47 |
| Msa0396870 | Msa0610190 | 0.803897 | 2.799340e-49 | -8.615850e-47 |
| Msa0396870 | Msa0614960 | 0.819925 | 8.991749e-53 | -8.615850e-47 |
| Msa0396870 | Msa0619300 | 0.820187 | 7.829276e-53 | -8.615850e-47 |
| Msa0396870 | Msa0622800 | -0.804556 | 2.041493e-49 | -8.615850e-47 |
| Msa0396870 | Msa0628200 | 0.824156 | 9.404109e-54 | -8.615850e-47 |
| Msa0396870 | Msa0629030 | 0.801460 | 8.910797e-49 | -8.615850e-47 |
| Msa0396870 | Msa0639410 | 0.808982 | 2.370123e-50 | -8.615850e-47 |
| Msa0396870 | Msa0641700 | 0.809301 | 2.024356e-50 | -8.615850e-47 |
| Msa0396870 | Msa0651820 | 0.805847 | 1.095629e-49 | -8.615850e-47 |
| Msa0396870 | Msa0655370 | 0.827524 | 1.491882e-54 | -8.615850e-47 |
| Msa0396870 | Msa0661330 | 0.803542 | 3.316909e-49 | -8.615850e-47 |
| Msa0396870 | Msa0666580 | 0.807051 | 6.105194e-50 | -8.615850e-47 |
| Msa0396870 | Msa0676570 | -0.804963 | 1.677995e-49 | -8.615850e-47 |
| Msa0396870 | Msa0694320 | 0.820964 | 5.191953e-53 | -8.615850e-47 |
| Msa0396870 | Msa0699170 | 0.828853 | 7.135468e-55 | -8.615850e-47 |
| Msa0396870 | Msa0704690 | 0.800515 | 1.390029e-48 | -8.615850e-47 |
| Msa0396870 | Msa0715350 | 0.801620 | 8.260873e-49 | -8.615850e-47 |
| Msa0396870 | Msa0721260 | 0.806396 | 8.395643e-50 | -8.615850e-47 |
| Msa0396870 | Msa0727230 | 0.836185 | 1.085455e-56 | -8.615850e-47 |
| Msa0396870 | Msa0728520 | 0.800018 | 1.754477e-48 | -8.615850e-47 |
| Msa0396870 | Msa0731580 | 0.801637 | 8.198571e-49 | -8.615850e-47 |
| Msa0396870 | Msa0738680 | 0.825903 | 3.637406e-54 | -8.615850e-47 |
| Msa0396870 | Msa0741600 | -0.807461 | 4.998093e-50 | -8.615850e-47 |
| Msa0396870 | Msa0750790 | 0.823763 | 1.162602e-53 | -8.615850e-47 |
| Msa0396870 | Msa0753410 | 0.809082 | 2.255570e-50 | -8.615850e-47 |
| Msa0396870 | Msa0754530 | 0.804148 | 2.482858e-49 | -8.615850e-47 |
| Msa0396870 | Msa0777070 | 0.806575 | 7.695950e-50 | -8.615850e-47 |
| Msa0396870 | Msa0783580 | 0.802153 | 6.422833e-49 | -8.615850e-47 |
| Msa0396870 | Msa0786600 | -0.814260 | 1.686521e-51 | -8.615850e-47 |
| Msa0396870 | Msa0792410 | 0.800656 | 1.301296e-48 | -8.615850e-47 |
| Msa0396870 | Msa0794240 | 0.803690 | 3.090651e-49 | -8.615850e-47 |
| Msa0396870 | Msa0795320 | 0.803280 | 3.759125e-49 | -8.615850e-47 |
| Msa0396870 | Msa0795330 | 0.807579 | 4.718797e-50 | -8.615850e-47 |
| Msa0396870 | Msa0802600 | 0.816336 | 5.828110e-52 | -8.615850e-47 |
| Msa0396870 | Msa0809920 | 0.816095 | 6.597524e-52 | -8.615850e-47 |
| Msa0396870 | Msa0813710 | 0.829107 | 6.193875e-55 | -8.615850e-47 |
| Msa0396870 | Msa0819150 | 0.817540 | 3.128449e-52 | -8.615850e-47 |
| Msa0396870 | Msa0822680 | -0.816560 | 5.192149e-52 | -8.615850e-47 |
| Msa0396870 | Msa0830930 | 0.803048 | 4.197813e-49 | -8.615850e-47 |
| Msa0396870 | Msa0831450 | 0.802515 | 5.408752e-49 | -8.615850e-47 |
| Msa0396870 | Msa0854160 | 0.822583 | 2.192129e-53 | -8.615850e-47 |
| Msa0396870 | Msa0854840 | 0.810587 | 1.070411e-50 | -8.615850e-47 |
| Msa0396870 | Msa0855260 | 0.800112 | 1.679354e-48 | -8.615850e-47 |
| Msa0396870 | Msa0861730 | 0.802616 | 5.155400e-49 | -8.615850e-47 |
| Msa0396870 | Msa0871420 | 0.837772 | 4.267530e-57 | -8.615850e-47 |
| Msa0396870 | Msa0874750 | 0.822825 | 1.925748e-53 | -8.615850e-47 |
| Msa0396870 | Msa0902340 | 0.811625 | 6.375462e-51 | -8.615850e-47 |
| Msa0396870 | Msa0936630 | 0.845471 | 3.977524e-59 | -8.615850e-47 |
| Msa0396870 | Msa0973770 | 0.827895 | 1.215392e-54 | -8.615850e-47 |
| Msa0396870 | Msa0976400 | 0.805260 | 1.454262e-49 | -8.615850e-47 |
| Msa0396870 | Msa1011140 | -0.805823 | 1.108471e-49 | -8.615850e-47 |
| Msa0396870 | Msa1023430 | 0.815295 | 9.944446e-52 | -8.615850e-47 |
| Msa0396870 | Msa1024350 | 0.801120 | 1.045739e-48 | -8.615850e-47 |
| Msa0396870 | Msa1035050 | 0.821027 | 5.022237e-53 | -8.615850e-47 |
| Msa0396870 | Msa1039150 | -0.807958 | 3.919955e-50 | -8.615850e-47 |
| Msa0396870 | Msa1040330 | 0.832560 | 8.818222e-56 | -8.615850e-47 |
| Msa0396870 | Msa1041260 | 0.800683 | 1.284836e-48 | -8.615850e-47 |
| Msa0396870 | Msa1042420 | -0.801924 | 7.157752e-49 | -8.615850e-47 |
| Msa0396870 | Msa1061840 | 0.848759 | 4.994272e-60 | -8.615850e-47 |
| Msa0396870 | Msa1075090 | 0.813092 | 3.049008e-51 | -8.615850e-47 |
| Msa0396870 | Msa1078210 | -0.818564 | 1.835463e-52 | -8.615850e-47 |
| Msa0396870 | Msa1083660 | -0.825432 | 4.703591e-54 | -8.615850e-47 |
| Msa0396870 | Msa1087380 | 0.804139 | 2.493153e-49 | -8.615850e-47 |
| Msa0396870 | Msa1102410 | -0.809341 | 1.985194e-50 | -8.615850e-47 |
| Msa0396870 | Msa1103450 | 0.800352 | 1.500254e-48 | -8.615850e-47 |
| Msa0396870 | Msa1107510 | 0.837278 | 5.710912e-57 | -8.615850e-47 |
| Msa0396870 | Msa1110900 | 0.808653 | 2.786664e-50 | -8.615850e-47 |
| Msa0396870 | Msa1120960 | 0.802316 | 5.943425e-49 | -8.615850e-47 |
| Msa0396870 | Msa1123440 | -0.818040 | 2.412443e-52 | -8.615850e-47 |
| Msa0396870 | Msa1124220 | 0.807236 | 5.577364e-50 | -8.615850e-47 |
| Msa0396870 | Msa1127940 | 0.819676 | 1.025052e-52 | -8.615850e-47 |
| Msa0396870 | Msa1129660 | -0.813544 | 2.425289e-51 | -8.615850e-47 |
| Msa0396870 | Msa1131120 | 0.809912 | 1.496219e-50 | -8.615850e-47 |
| Msa0396870 | Msa1136630 | 0.813323 | 2.713500e-51 | -8.615850e-47 |
| Msa0396870 | Msa1142390 | 0.800041 | 1.735964e-48 | -8.615850e-47 |
| Msa0396870 | Msa1147010 | 0.808688 | 2.739101e-50 | -8.615850e-47 |
| Msa0396870 | Msa1151070 | 0.813733 | 2.203787e-51 | -8.615850e-47 |
| Msa0396870 | Msa1165660 | 0.816861 | 4.444501e-52 | -8.615850e-47 |
| Msa0396870 | Msa1165860 | 0.816872 | 4.419762e-52 | -8.615850e-47 |
| Msa0396870 | Msa1181660 | 0.822758 | 1.996197e-53 | -8.615850e-47 |
| Msa0396870 | Msa1191270 | 0.808751 | 2.655428e-50 | -8.615850e-47 |
| Msa0396870 | Msa1202110 | 0.811278 | 7.585562e-51 | -8.615850e-47 |
| Msa0396870 | Msa1221520 | 0.823787 | 1.147538e-53 | -8.615850e-47 |
| Msa0396870 | Msa1223540 | 0.814108 | 1.821864e-51 | -8.615850e-47 |
| Msa0396870 | Msa1223620 | 0.812310 | 4.522316e-51 | -8.615850e-47 |
| Msa0396870 | Msa1223710 | 0.805079 | 1.587357e-49 | -8.615850e-47 |
| Msa0396870 | Msa1223960 | 0.800342 | 1.507601e-48 | -8.615850e-47 |
| Msa0396870 | Msa1223990 | 0.818139 | 2.290221e-52 | -8.615850e-47 |
| Msa0396870 | Msa1254870 | 0.810496 | 1.119909e-50 | -8.615850e-47 |
| Msa0396870 | Msa1262650 | 0.803937 | 2.746608e-49 | -8.615850e-47 |
| Msa0396870 | Msa1263110 | 0.820098 | 8.208736e-53 | -8.615850e-47 |
| Msa0396870 | Msa1263120 | 0.809221 | 2.106027e-50 | -8.615850e-47 |
| Msa0396870 | Msa1263520 | 0.817022 | 4.089882e-52 | -8.615850e-47 |
| Msa0396870 | Msa1264940 | 0.810031 | 1.410602e-50 | -8.615850e-47 |
| Msa0396870 | Msa1269200 | 0.826080 | 3.301605e-54 | -8.615850e-47 |
| Msa0396870 | Msa1273320 | 0.816603 | 5.078271e-52 | -8.615850e-47 |
| Msa0396870 | Msa1292700 | -0.806865 | 6.684185e-50 | -8.615850e-47 |
| Msa0396870 | Msa1301410 | -0.802745 | 4.849152e-49 | -8.615850e-47 |
| Msa0396870 | Msa1302630 | 0.803754 | 2.997456e-49 | -8.615850e-47 |
| Msa0396870 | Msa1303150 | 0.836411 | 9.507730e-57 | -8.615850e-47 |
| Msa0396870 | Msa1313720 | 0.801187 | 1.013420e-48 | -8.615850e-47 |
| Msa0396870 | Msa1317740 | 0.817624 | 2.993499e-52 | -8.615850e-47 |
| Msa0396870 | Msa1320160 | 0.806572 | 7.707945e-50 | -8.615850e-47 |
| Msa0396870 | Msa1328430 | 0.810437 | 1.153501e-50 | -8.615850e-47 |
| Msa0396870 | Msa1332340 | -0.802402 | 5.706198e-49 | -8.615850e-47 |
| Msa0396870 | Msa1334000 | 0.815707 | 8.055179e-52 | -8.615850e-47 |
| Msa0396870 | Msa1334670 | 0.803087 | 4.120734e-49 | -8.615850e-47 |
| Msa0396870 | Msa1349420 | 0.814017 | 1.908334e-51 | -8.615850e-47 |
| Msa0396870 | Msa1362520 | 0.800901 | 1.159542e-48 | -8.615850e-47 |
| Msa0396870 | Msa1365230 | 0.801743 | 7.795040e-49 | -8.615850e-47 |
| Msa0396870 | Msa1366470 | 0.814656 | 1.378577e-51 | -8.615850e-47 |
| Msa0396870 | Msa1373560 | 0.804248 | 2.365755e-49 | -8.615850e-47 |
| Msa0396870 | Msa1381300 | -0.824122 | 9.579168e-54 | -8.615850e-47 |
| Msa0396870 | Msa1382100 | -0.800904 | 1.157795e-48 | -8.615850e-47 |
| Msa0396870 | Msa1398120 | 0.807261 | 5.511942e-50 | -8.615850e-47 |
| Msa0396870 | Msa1401000 | -0.808828 | 2.556250e-50 | -8.615850e-47 |
| Msa0396870 | Msa1412360 | 0.801400 | 9.164681e-49 | -8.615850e-47 |
| Msa0396870 | Msa1448410 | -0.802131 | 6.489089e-49 | -8.615850e-47 |
| Msa0396870 | Msa1451200 | -0.808965 | 2.390078e-50 | -8.615850e-47 |
| Msa0396870 | Msa1453890 | 0.814723 | 1.332101e-51 | -8.615850e-47 |
| Msa0396870 | Msa1459610 | 0.807220 | 5.622513e-50 | -8.615850e-47 |
| Msa0242720 | Msa0396870 | 0.829804 | 4.194270e-55 | -8.615850e-47 |
| Msa0261020 | Msa0396870 | -0.813910 | 2.014963e-51 | -8.615850e-47 |
| Msa0269660 | Msa0396870 | -0.801416 | 9.098462e-49 | -8.615850e-47 |
| Msa0271700 | Msa0396870 | 0.827908 | 1.206236e-54 | -8.615850e-47 |
| Msa0271720 | Msa0396870 | 0.827443 | 1.560059e-54 | -8.615850e-47 |
| Msa0272990 | Msa0396870 | -0.800404 | 1.464627e-48 | -8.615850e-47 |
| Msa0274260 | Msa0396870 | 0.811498 | 6.794583e-51 | -8.615850e-47 |
| Msa0287480 | Msa0396870 | 0.801346 | 9.404368e-49 | -8.615850e-47 |
| Msa0290800 | Msa0396870 | 0.802251 | 6.129652e-49 | -8.615850e-47 |
| Msa0294200 | Msa0396870 | 0.805831 | 1.104053e-49 | -8.615850e-47 |
| Msa0307430 | Msa0396870 | 0.805474 | 1.311953e-49 | -8.615850e-47 |
| Msa0310190 | Msa0396870 | 0.811847 | 5.703592e-51 | -8.615850e-47 |
| Msa0316230 | Msa0396870 | 0.812266 | 4.623308e-51 | -8.615850e-47 |
| Msa0320130 | Msa0396870 | 0.801022 | 1.095583e-48 | -8.615850e-47 |
| Msa0320140 | Msa0396870 | 0.800585 | 1.345373e-48 | -8.615850e-47 |
| Msa0324810 | Msa0396870 | 0.802067 | 6.687550e-49 | -8.615850e-47 |
| Msa0328870 | Msa0396870 | 0.808335 | 3.257022e-50 | -8.615850e-47 |
| Msa0336550 | Msa0396870 | -0.806476 | 8.076223e-50 | -8.615850e-47 |
| Msa0347320 | Msa0396870 | 0.849497 | 3.112632e-60 | -8.615850e-47 |
| Msa0350180 | Msa0396870 | 0.803081 | 4.133507e-49 | -8.615850e-47 |
| Msa0353010 | Msa0396870 | 0.807771 | 4.294314e-50 | -8.615850e-47 |
| Msa0356270 | Msa0396870 | 0.800055 | 1.724353e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396870 | MtrunA17_Chr3g0084201 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 3.89e-137 | 380 |
| Msa0396870 | MtrunA17_Chr3g0084221 | 83.770 | 191 | 30 | 1 | 1 | 190 | 1 | 191 | 1.96e-115 | 326 |
| Msa0396870 | MtrunA17_Chr3g0084161 | 73.298 | 191 | 50 | 1 | 1 | 190 | 1 | 191 | 1.69e-103 | 295 |
| Msa0396870 | MtrunA17_Chr8g0353131 | 72.105 | 190 | 52 | 1 | 2 | 190 | 3 | 192 | 3.37e-102 | 292 |
| Msa0396870 | MtrunA17_Chr3g0084191 | 68.750 | 192 | 56 | 1 | 1 | 188 | 1 | 192 | 1.09e-91 | 276 |
| Msa0396870 | MtrunA17_Chr3g0082411 | 60.317 | 63 | 20 | 1 | 49 | 106 | 1 | 63 | 5.81e-20 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396870 | AT3G27890.1 | 72.193 | 187 | 51 | 1 | 4 | 189 | 10 | 196 | 3.07e-93 | 270 |
Find 42 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAATTATTCTGTTTC+AGG | 0.095784 | 3_2:+15721212 | Msa0396870:CDS |
| ATTAAGGTTGCTGCACTTTC+TGG | 0.118175 | 3_2:+15720864 | Msa0396870:CDS |
| TATTTCAAATTAAACACTTA+TGG | 0.231105 | 3_2:-15722733 | None:intergenic |
| AATTGCCAACAACCTATTCT+TGG | 0.304308 | 3_2:-15722650 | None:intergenic |
| CAACATGGCTGGGATAATTA+AGG | 0.328930 | 3_2:+15720848 | Msa0396870:exon |
| CGAAAGGATTCAACTTCAAC+TGG | 0.330053 | 3_2:-15721146 | None:intergenic |
| CATCAAGATCACCAAATGTT+TGG | 0.330789 | 3_2:+15722443 | Msa0396870:CDS |
| GGTTTACCAGCCCAAACATT+TGG | 0.362348 | 3_2:-15722454 | None:intergenic |
| CAGTTGAAGTTGAATCCTTT+CGG | 0.382515 | 3_2:+15721147 | Msa0396870:CDS |
| CAGTCAAGTGCATTCTTTAG+TGG | 0.388337 | 3_2:-15722418 | None:intergenic |
| ATCAAGATCACCAAATGTTT+GGG | 0.414288 | 3_2:+15722444 | Msa0396870:CDS |
| TGTATATGTTATGTGATTTG+TGG | 0.419062 | 3_2:-15720801 | None:intergenic |
| AACACTGGTCTCATTCGTTC+TGG | 0.427633 | 3_2:+15720909 | Msa0396870:CDS |
| TTGCAGAGTAAATGCCTTCA+AGG | 0.434046 | 3_2:-15722680 | None:intergenic |
| GAATTTCACTCCATTCCTCT+TGG | 0.434966 | 3_2:+15722767 | Msa0396870:three_prime_UTR |
| GCATTTACTCTGCAACTTCA+AGG | 0.438426 | 3_2:+15722688 | Msa0396870:CDS |
| CACTAAAGAATGCACTTGAC+TGG | 0.447734 | 3_2:+15722419 | Msa0396870:CDS |
| TGATTCACAAACAACATGGC+TGG | 0.461512 | 3_2:+15720837 | Msa0396870:exon |
| GTACTTGTTCTTTATTTACA+TGG | 0.475159 | 3_2:+15722845 | Msa0396870:three_prime_UTR |
| CAATATCATCTCCGACAAAT+CGG | 0.490712 | 3_2:+15722523 | Msa0396870:CDS |
| AACACTGATCTTGAGAAAGA+AGG | 0.494409 | 3_2:+15721116 | Msa0396870:CDS |
| CGAGGAAAACTCCGATTTGT+CGG | 0.523747 | 3_2:-15722534 | None:intergenic |
| AGATGCCAAGAATAGGTTGT+TGG | 0.525362 | 3_2:+15722645 | Msa0396870:CDS |
| ACACTGATCTTGAGAAAGAA+GGG | 0.529151 | 3_2:+15721117 | Msa0396870:CDS |
| CCTGCGGCAATAGTGAGTGC+TGG | 0.540058 | 3_2:+15722475 | Msa0396870:CDS |
| CCAGCACTCACTATTGCCGC+AGG | 0.543014 | 3_2:-15722475 | None:intergenic |
| AGATCACCAAATGTTTGGGC+TGG | 0.543332 | 3_2:+15722448 | Msa0396870:CDS |
| TCGATGAAGATGCCAAGAAT+AGG | 0.548839 | 3_2:+15722638 | Msa0396870:CDS |
| GATTCACAAACAACATGGCT+GGG | 0.554176 | 3_2:+15720838 | Msa0396870:exon |
| ATATGAAATTCCAAGAGGAA+TGG | 0.565364 | 3_2:-15722777 | None:intergenic |
| CGAAAAGCTTCTTACAACAC+TGG | 0.566271 | 3_2:+15720894 | Msa0396870:CDS |
| CCAGCAAAATTTAACAGCGA+TGG | 0.571728 | 3_2:+15722607 | Msa0396870:CDS |
| ACTAAAGAATGCACTTGACT+GGG | 0.582016 | 3_2:+15722420 | Msa0396870:CDS |
| TCAAGATCAGTGTTCAACAT+TGG | 0.585501 | 3_2:-15721107 | None:intergenic |
| GTGAGTGCTGGAGGAGGACA+TGG | 0.596944 | 3_2:+15722487 | Msa0396870:CDS |
| GCAATAGTGAGTGCTGGAGG+AGG | 0.597133 | 3_2:+15722481 | Msa0396870:CDS |
| TTTCTATATGAAATTCCAAG+AGG | 0.620158 | 3_2:-15722782 | None:intergenic |
| TATTGATGAAATGAAGATCG+AGG | 0.655609 | 3_2:-15722552 | None:intergenic |
| GCGGCAATAGTGAGTGCTGG+AGG | 0.656496 | 3_2:+15722478 | Msa0396870:CDS |
| ACATTGATTCACAAACAACA+TGG | 0.671488 | 3_2:+15720833 | Msa0396870:exon |
| TGTTTGGGCTGGTAAACCTG+CGG | 0.686432 | 3_2:+15722459 | Msa0396870:CDS |
| AGTGCTGGAGGAGGACATGG+TGG | 0.705715 | 3_2:+15722490 | Msa0396870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAATAAAGTATTTG+TGG | - | chr3_2:15720952-15720971 | None:intergenic | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_2:15721331-15721350 | None:intergenic | 10.0% |
| !!! | TATCCTTTTTTTTTTTTTTT+AGG | + | chr3_2:15721339-15721358 | Msa0396870:intron | 10.0% |
| !!! | ATCCTTTTTTTTTTTTTTTA+GGG | + | chr3_2:15721340-15721359 | Msa0396870:intron | 10.0% |
| !!! | AAAAATAAATAAAGTATTTG+TGG | - | chr3_2:15720952-15720971 | None:intergenic | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_2:15721331-15721350 | None:intergenic | 10.0% |
| !!! | TATCCTTTTTTTTTTTTTTT+AGG | + | chr3_2:15721339-15721358 | Msa0396870:intron | 10.0% |
| !!! | ATCCTTTTTTTTTTTTTTTA+GGG | + | chr3_2:15721340-15721359 | Msa0396870:intron | 10.0% |
| !! | TTCCCTAAAAAAAAAAAAAA+AGG | - | chr3_2:15721345-15721364 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3_2:15721657-15721676 | None:intergenic | 15.0% |
| !!! | ACAAGTCAATTTTTTTTTTT+GGG | - | chr3_2:15721854-15721873 | None:intergenic | 15.0% |
| !!! | AACAAGTCAATTTTTTTTTT+TGG | - | chr3_2:15721855-15721874 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15722112-15722131 | Msa0396870:intron | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_2:15722736-15722755 | None:intergenic | 15.0% |
| !! | TTCCCTAAAAAAAAAAAAAA+AGG | - | chr3_2:15721345-15721364 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3_2:15721657-15721676 | None:intergenic | 15.0% |
| !!! | ACAAGTCAATTTTTTTTTTT+GGG | - | chr3_2:15721854-15721873 | None:intergenic | 15.0% |
| !!! | AACAAGTCAATTTTTTTTTT+TGG | - | chr3_2:15721855-15721874 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_2:15722112-15722131 | Msa0396870:intron | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_2:15722736-15722755 | None:intergenic | 15.0% |
| !!! | GATACATGATTTTTTTTTTG+AGG | + | chr3_2:15720980-15720999 | Msa0396870:intron | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15721212-15721231 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15721212-15721231 | Msa0396870:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_2:15721370-15721389 | None:intergenic | 20.0% |
| !!! | AAGGAGTATTATATTACATA+TGG | - | chr3_2:15721505-15721524 | None:intergenic | 20.0% |
| !! | AGAAAATGTTATTATTGCAT+TGG | - | chr3_2:15721594-15721613 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_2:15721671-15721690 | Msa0396870:intron | 20.0% |
| !! | AAACTATCCTTATTAACTAT+TGG | - | chr3_2:15721681-15721700 | None:intergenic | 20.0% |
| !! | AATAGTTAATAAGGATAGTT+TGG | + | chr3_2:15721680-15721699 | Msa0396870:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_2:15722134-15722153 | Msa0396870:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_2:15722378-15722397 | None:intergenic | 20.0% |
| !!! | GATACATGATTTTTTTTTTG+AGG | + | chr3_2:15720980-15720999 | Msa0396870:intron | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_2:15721212-15721231 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_2:15721212-15721231 | Msa0396870:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_2:15721370-15721389 | None:intergenic | 20.0% |
| !!! | AAGGAGTATTATATTACATA+TGG | - | chr3_2:15721505-15721524 | None:intergenic | 20.0% |
| !! | AGAAAATGTTATTATTGCAT+TGG | - | chr3_2:15721594-15721613 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_2:15721671-15721690 | Msa0396870:intron | 20.0% |
| !! | AAACTATCCTTATTAACTAT+TGG | - | chr3_2:15721681-15721700 | None:intergenic | 20.0% |
| !! | AATAGTTAATAAGGATAGTT+TGG | + | chr3_2:15721680-15721699 | Msa0396870:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_2:15722134-15722153 | Msa0396870:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_2:15722378-15722397 | None:intergenic | 20.0% |
| ! | TGTATATGTTATGTGATTTG+TGG | - | chr3_2:15720804-15720823 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_2:15721216-15721235 | Msa0396870:intron | 25.0% |
| !!! | TTCAAAATGAATGTCGTTTT+AGG | - | chr3_2:15721762-15721781 | None:intergenic | 25.0% |
| !!! | AAACGACATTCATTTTGAAA+CGG | + | chr3_2:15721763-15721782 | Msa0396870:intron | 25.0% |
| !! | AGACATATATGTCGAAATTT+TGG | + | chr3_2:15721902-15721921 | Msa0396870:intron | 25.0% |
| !! | GACATATATGTCGAAATTTT+GGG | + | chr3_2:15721903-15721922 | Msa0396870:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15721966-15721985 | Msa0396870:intron | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15722580-15722599 | None:intergenic | 25.0% |
| ! | TTTCTATATGAAATTCCAAG+AGG | - | chr3_2:15722785-15722804 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_2:15722845-15722864 | Msa0396870:three_prime_UTR | 25.0% |
| ! | TGTATATGTTATGTGATTTG+TGG | - | chr3_2:15720804-15720823 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_2:15721216-15721235 | Msa0396870:intron | 25.0% |
| !!! | TTCAAAATGAATGTCGTTTT+AGG | - | chr3_2:15721762-15721781 | None:intergenic | 25.0% |
| !!! | AAACGACATTCATTTTGAAA+CGG | + | chr3_2:15721763-15721782 | Msa0396870:intron | 25.0% |
| !! | AGACATATATGTCGAAATTT+TGG | + | chr3_2:15721902-15721921 | Msa0396870:intron | 25.0% |
| !! | GACATATATGTCGAAATTTT+GGG | + | chr3_2:15721903-15721922 | Msa0396870:intron | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_2:15721966-15721985 | Msa0396870:intron | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_2:15722580-15722599 | None:intergenic | 25.0% |
| ! | TTTCTATATGAAATTCCAAG+AGG | - | chr3_2:15722785-15722804 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_2:15722845-15722864 | Msa0396870:three_prime_UTR | 25.0% |
| !! | ACATTGATTCACAAACAACA+TGG | + | chr3_2:15720833-15720852 | Msa0396870:exon | 30.0% |
| AAGTATTTGTGGTAAGAAGT+AGG | - | chr3_2:15720941-15720960 | None:intergenic | 30.0% | |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15721478-15721497 | Msa0396870:intron | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | - | chr3_2:15721628-15721647 | None:intergenic | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | - | chr3_2:15721632-15721651 | None:intergenic | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15721965-15721984 | Msa0396870:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+TGG | + | chr3_2:15722223-15722242 | Msa0396870:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_2:15722365-15722384 | None:intergenic | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15722444-15722463 | Msa0396870:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15722555-15722574 | None:intergenic | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_2:15722709-15722728 | Msa0396870:exon | 30.0% | |
| ATATGAAATTCCAAGAGGAA+TGG | - | chr3_2:15722780-15722799 | None:intergenic | 30.0% | |
| !! | ACATTGATTCACAAACAACA+TGG | + | chr3_2:15720833-15720852 | Msa0396870:exon | 30.0% |
| AAGTATTTGTGGTAAGAAGT+AGG | - | chr3_2:15720941-15720960 | None:intergenic | 30.0% | |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_2:15721478-15721497 | Msa0396870:intron | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | - | chr3_2:15721628-15721647 | None:intergenic | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | - | chr3_2:15721632-15721651 | None:intergenic | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_2:15721965-15721984 | Msa0396870:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+TGG | + | chr3_2:15722223-15722242 | Msa0396870:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_2:15722365-15722384 | None:intergenic | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_2:15722444-15722463 | Msa0396870:CDS | 30.0% | |
| TATTGATGAAATGAAGATCG+AGG | - | chr3_2:15722555-15722574 | None:intergenic | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_2:15722709-15722728 | Msa0396870:exon | 30.0% | |
| ATATGAAATTCCAAGAGGAA+TGG | - | chr3_2:15722780-15722799 | None:intergenic | 30.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15721049-15721068 | Msa0396870:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15721050-15721069 | Msa0396870:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15721110-15721129 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_2:15721116-15721135 | Msa0396870:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_2:15721117-15721136 | Msa0396870:CDS | 35.0% | |
| CAGTTGAAGTTGAATCCTTT+CGG | + | chr3_2:15721147-15721166 | Msa0396870:CDS | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15721161-15721180 | Msa0396870:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15721165-15721184 | None:intergenic | 35.0% |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_2:15721228-15721247 | Msa0396870:intron | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_2:15721388-15721407 | Msa0396870:intron | 35.0% | |
| AAGCGACACTTATCTTGAAA+CGG | - | chr3_2:15721528-15721547 | None:intergenic | 35.0% | |
| ! | GTGTGCAAAGTATTAATTGG+AGG | - | chr3_2:15721629-15721648 | None:intergenic | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr3_2:15721767-15721786 | Msa0396870:intron | 35.0% |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15721962-15721981 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15722338-15722357 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_2:15722420-15722439 | Msa0396870:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15722443-15722462 | Msa0396870:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15722523-15722542 | Msa0396870:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_2:15722653-15722672 | None:intergenic | 35.0% | |
| ! | TGAGTTGAGCAAAAAAGTTG+AGG | + | chr3_2:15721049-15721068 | Msa0396870:CDS | 35.0% |
| GAGTTGAGCAAAAAAGTTGA+GGG | + | chr3_2:15721050-15721069 | Msa0396870:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15721110-15721129 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_2:15721116-15721135 | Msa0396870:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_2:15721117-15721136 | Msa0396870:CDS | 35.0% | |
| CAGTTGAAGTTGAATCCTTT+CGG | + | chr3_2:15721147-15721166 | Msa0396870:CDS | 35.0% | |
| TCCTTTCGGAAAAAGATTCT+TGG | + | chr3_2:15721161-15721180 | Msa0396870:CDS | 35.0% | |
| ! | TCCAAGAATCTTTTTCCGAA+AGG | - | chr3_2:15721165-15721184 | None:intergenic | 35.0% |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_2:15721228-15721247 | Msa0396870:intron | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_2:15721388-15721407 | Msa0396870:intron | 35.0% | |
| AAGCGACACTTATCTTGAAA+CGG | - | chr3_2:15721528-15721547 | None:intergenic | 35.0% | |
| ! | GTGTGCAAAGTATTAATTGG+AGG | - | chr3_2:15721629-15721648 | None:intergenic | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr3_2:15721767-15721786 | Msa0396870:intron | 35.0% |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_2:15721962-15721981 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_2:15722338-15722357 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_2:15722420-15722439 | Msa0396870:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_2:15722443-15722462 | Msa0396870:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_2:15722523-15722542 | Msa0396870:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_2:15722653-15722672 | None:intergenic | 35.0% | |
| TGATTCACAAACAACATGGC+TGG | + | chr3_2:15720837-15720856 | Msa0396870:exon | 40.0% | |
| GATTCACAAACAACATGGCT+GGG | + | chr3_2:15720838-15720857 | Msa0396870:exon | 40.0% | |
| CAACATGGCTGGGATAATTA+AGG | + | chr3_2:15720848-15720867 | Msa0396870:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15720864-15720883 | Msa0396870:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15720894-15720913 | Msa0396870:CDS | 40.0% | |
| CGAAAGGATTCAACTTCAAC+TGG | - | chr3_2:15721149-15721168 | None:intergenic | 40.0% | |
| GACACTTATCTTGAAACGGA+AGG | - | chr3_2:15721524-15721543 | None:intergenic | 40.0% | |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr3_2:15721766-15721785 | Msa0396870:intron | 40.0% |
| CATGGTTAACAATGCTGTCA+AGG | - | chr3_2:15721944-15721963 | None:intergenic | 40.0% | |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_2:15722421-15722440 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_2:15722419-15722438 | Msa0396870:CDS | 40.0% | |
| ! | TCGCTGTTAAATTTTGCTGG+AGG | - | chr3_2:15722607-15722626 | None:intergenic | 40.0% |
| ! | CCATCGCTGTTAAATTTTGC+TGG | - | chr3_2:15722610-15722629 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACAGCGA+TGG | + | chr3_2:15722607-15722626 | Msa0396870:CDS | 40.0% | |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_2:15722638-15722657 | Msa0396870:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_2:15722645-15722664 | Msa0396870:CDS | 40.0% | |
| ! | GGCAATTCTTTTGTCCTTGA+AGG | + | chr3_2:15722666-15722685 | Msa0396870:CDS | 40.0% |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15722683-15722702 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15722688-15722707 | Msa0396870:CDS | 40.0% | |
| GAATTTCACTCCATTCCTCT+TGG | + | chr3_2:15722767-15722786 | Msa0396870:three_prime_UTR | 40.0% | |
| TGATTCACAAACAACATGGC+TGG | + | chr3_2:15720837-15720856 | Msa0396870:exon | 40.0% | |
| GATTCACAAACAACATGGCT+GGG | + | chr3_2:15720838-15720857 | Msa0396870:exon | 40.0% | |
| CAACATGGCTGGGATAATTA+AGG | + | chr3_2:15720848-15720867 | Msa0396870:exon | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_2:15720864-15720883 | Msa0396870:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+TGG | + | chr3_2:15720894-15720913 | Msa0396870:CDS | 40.0% | |
| CGAAAGGATTCAACTTCAAC+TGG | - | chr3_2:15721149-15721168 | None:intergenic | 40.0% | |
| GACACTTATCTTGAAACGGA+AGG | - | chr3_2:15721524-15721543 | None:intergenic | 40.0% | |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr3_2:15721766-15721785 | Msa0396870:intron | 40.0% |
| CATGGTTAACAATGCTGTCA+AGG | - | chr3_2:15721944-15721963 | None:intergenic | 40.0% | |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_2:15722421-15722440 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_2:15722419-15722438 | Msa0396870:CDS | 40.0% | |
| ! | TCGCTGTTAAATTTTGCTGG+AGG | - | chr3_2:15722607-15722626 | None:intergenic | 40.0% |
| ! | CCATCGCTGTTAAATTTTGC+TGG | - | chr3_2:15722610-15722629 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACAGCGA+TGG | + | chr3_2:15722607-15722626 | Msa0396870:CDS | 40.0% | |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_2:15722638-15722657 | Msa0396870:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_2:15722645-15722664 | Msa0396870:CDS | 40.0% | |
| ! | GGCAATTCTTTTGTCCTTGA+AGG | + | chr3_2:15722666-15722685 | Msa0396870:CDS | 40.0% |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_2:15722683-15722702 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_2:15722688-15722707 | Msa0396870:CDS | 40.0% | |
| GAATTTCACTCCATTCCTCT+TGG | + | chr3_2:15722767-15722786 | Msa0396870:three_prime_UTR | 40.0% | |
| ! | AACACTGGTCTCATTCGTTC+TGG | + | chr3_2:15720909-15720928 | Msa0396870:CDS | 45.0% |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_2:15721238-15721257 | Msa0396870:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_2:15721239-15721258 | Msa0396870:intron | 45.0% | |
| AAATACAAGACGACCCCACA+GGG | - | chr3_2:15721255-15721274 | None:intergenic | 45.0% | |
| AAAATACAAGACGACCCCAC+AGG | - | chr3_2:15721256-15721275 | None:intergenic | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_2:15722189-15722208 | Msa0396870:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_2:15722208-15722227 | None:intergenic | 45.0% | |
| CAACGACAGTTAACTGCCAT+CGG | + | chr3_2:15722296-15722315 | Msa0396870:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15722335-15722354 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15722448-15722467 | Msa0396870:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15722457-15722476 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15722537-15722556 | None:intergenic | 45.0% |
| ! | AACACTGGTCTCATTCGTTC+TGG | + | chr3_2:15720909-15720928 | Msa0396870:CDS | 45.0% |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_2:15721238-15721257 | Msa0396870:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_2:15721239-15721258 | Msa0396870:intron | 45.0% | |
| AAATACAAGACGACCCCACA+GGG | - | chr3_2:15721255-15721274 | None:intergenic | 45.0% | |
| AAAATACAAGACGACCCCAC+AGG | - | chr3_2:15721256-15721275 | None:intergenic | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_2:15722189-15722208 | Msa0396870:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_2:15722208-15722227 | None:intergenic | 45.0% | |
| CAACGACAGTTAACTGCCAT+CGG | + | chr3_2:15722296-15722315 | Msa0396870:intron | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_2:15722335-15722354 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_2:15722448-15722467 | Msa0396870:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_2:15722457-15722476 | None:intergenic | 45.0% | |
| ! | CGAGGAAAACTCCGATTTGT+CGG | - | chr3_2:15722537-15722556 | None:intergenic | 45.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15721443-15721462 | Msa0396870:intron | 5.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_2:15721443-15721462 | Msa0396870:intron | 5.0% |
| CTGGTCTCATTCGTTCTGGT+TGG | + | chr3_2:15720913-15720932 | Msa0396870:intron | 50.0% | |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_2:15721237-15721256 | Msa0396870:intron | 50.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGA+TGG | - | chr3_2:15722315-15722334 | None:intergenic | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15722459-15722478 | Msa0396870:CDS | 50.0% |
| CTGGTCTCATTCGTTCTGGT+TGG | + | chr3_2:15720913-15720932 | Msa0396870:intron | 50.0% | |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_2:15721237-15721256 | Msa0396870:intron | 50.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGA+TGG | - | chr3_2:15722315-15722334 | None:intergenic | 50.0% |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_2:15722459-15722478 | Msa0396870:CDS | 50.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15722320-15722339 | Msa0396870:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15722321-15722340 | Msa0396870:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15722481-15722500 | Msa0396870:CDS | 55.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_2:15722320-15722339 | Msa0396870:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_2:15722321-15722340 | Msa0396870:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_2:15722481-15722500 | Msa0396870:CDS | 55.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15722478-15722497 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15722475-15722494 | Msa0396870:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15722478-15722497 | Msa0396870:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15722487-15722506 | Msa0396870:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15722490-15722509 | Msa0396870:CDS | 60.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_2:15722478-15722497 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_2:15722475-15722494 | Msa0396870:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_2:15722478-15722497 | Msa0396870:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_2:15722487-15722506 | Msa0396870:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_2:15722490-15722509 | Msa0396870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15720790 | 15722915 | 15720790 | ID=Msa0396870;Name=Msa0396870 |
| chr3_2 | mRNA | 15720790 | 15722915 | 15720790 | ID=Msa0396870-mRNA-1;Parent=Msa0396870;Name=Msa0396870-mRNA-1;_AED=0.35;_eAED=0.35;_QI=62|1|0.66|1|1|1|3|195|190 |
| chr3_2 | exon | 15720790 | 15720930 | 15720790 | ID=Msa0396870-mRNA-1:exon:3528;Parent=Msa0396870-mRNA-1 |
| chr3_2 | exon | 15721045 | 15721233 | 15721045 | ID=Msa0396870-mRNA-1:exon:3529;Parent=Msa0396870-mRNA-1 |
| chr3_2 | exon | 15722416 | 15722915 | 15722416 | ID=Msa0396870-mRNA-1:exon:3530;Parent=Msa0396870-mRNA-1 |
| chr3_2 | five_prime_UTR | 15720790 | 15720851 | 15720790 | ID=Msa0396870-mRNA-1:five_prime_utr;Parent=Msa0396870-mRNA-1 |
| chr3_2 | CDS | 15720852 | 15720930 | 15720852 | ID=Msa0396870-mRNA-1:cds;Parent=Msa0396870-mRNA-1 |
| chr3_2 | CDS | 15721045 | 15721233 | 15721045 | ID=Msa0396870-mRNA-1:cds;Parent=Msa0396870-mRNA-1 |
| chr3_2 | CDS | 15722416 | 15722720 | 15722416 | ID=Msa0396870-mRNA-1:cds;Parent=Msa0396870-mRNA-1 |
| chr3_2 | three_prime_UTR | 15722721 | 15722915 | 15722721 | ID=Msa0396870-mRNA-1:three_prime_utr;Parent=Msa0396870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
