Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396980 | AES68942.2 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396980 | G7IW53 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa0396980 | 0.810159 | 1.324136e-50 | -8.615850e-47 |
| Msa0396980 | Msa0397010 | 0.987300 | 9.143023e-170 | -8.615850e-47 |
| Msa0396980 | Msa0492010 | 0.982752 | 6.587329e-156 | -8.615850e-47 |
| Msa0288240 | Msa0396980 | 0.804116 | 2.521219e-49 | -8.615850e-47 |
| Msa0326670 | Msa0396980 | 0.811563 | 6.574901e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396980 | MtrunA17_Chr3g0084341 | 94.486 | 399 | 22 | 0 | 19 | 417 | 1 | 399 | 0.0 | 768 |
| Msa0396980 | MtrunA17_Chr4g0046731 | 86.397 | 272 | 37 | 0 | 19 | 290 | 1 | 272 | 3.65e-161 | 454 |
| Msa0396980 | MtrunA17_Chr1g0169631 | 96.429 | 28 | 1 | 0 | 39 | 66 | 3 | 30 | 1.21e-13 | 66.2 |
| Msa0396980 | MtrunA17_Chr1g0148071 | 89.286 | 28 | 3 | 0 | 39 | 66 | 31 | 58 | 3.45e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396980 | AT1G50910.1 | 56.800 | 250 | 104 | 3 | 21 | 268 | 4 | 251 | 3.03e-80 | 256 |
| Msa0396980 | AT1G50910.2 | 49.000 | 100 | 47 | 3 | 171 | 268 | 11 | 108 | 4.41e-19 | 88.6 |
Find 91 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCATTTCCCATTAAA+TGG | 0.136928 | 3_2:+15917600 | None:intergenic |
| GCATCTGCTTCACCTGTTTC+CGG | 0.170365 | 3_2:+15917941 | None:intergenic |
| GGCTAAGTCATTCCATTTAA+TGG | 0.180830 | 3_2:-15917612 | Msa0396980:CDS |
| ATTAGGTGAGGAGGGATTTA+AGG | 0.196911 | 3_2:-15921258 | Msa0396980:intron |
| GGGACTTTCTGTGACAATTA+TGG | 0.254227 | 3_2:-15918955 | Msa0396980:CDS |
| AAAAGATGAATCTTCTGTTT+TGG | 0.292424 | 3_2:+15921169 | None:intergenic |
| CTTCATAAGATGCTGGAAAT+AGG | 0.297223 | 3_2:+15921513 | None:intergenic |
| GCTAGCACGTCTACGAGTTT+TGG | 0.318715 | 3_2:-15918928 | Msa0396980:CDS |
| GCTAAGTCATTCCATTTAAT+GGG | 0.320185 | 3_2:-15917611 | Msa0396980:CDS |
| CATCTGCTTCACCTGTTTCC+GGG | 0.333787 | 3_2:+15917942 | None:intergenic |
| GCTTCTGCAGTTGGCAAACT+TGG | 0.355509 | 3_2:-15921236 | Msa0396980:CDS |
| ACTTGAGAGGAAGCATAAAA+AGG | 0.361049 | 3_2:-15918342 | Msa0396980:CDS |
| GACACTATCGAGTCTATTCT+TGG | 0.365745 | 3_2:-15918254 | Msa0396980:CDS |
| CACCCTCTGGTGAAGATTCA+TGG | 0.372177 | 3_2:+15917777 | None:intergenic |
| TCTTGTATACCAATCTTTCA+AGG | 0.403473 | 3_2:+15921560 | None:intergenic |
| AATCTTTCTGTTCAAGCATC+AGG | 0.410309 | 3_2:-15918287 | Msa0396980:CDS |
| AAAAGTCAATTCATTCTTCA+CGG | 0.421028 | 3_2:+15917385 | None:intergenic |
| GACCAACATGACCCGGAAAC+AGG | 0.424431 | 3_2:-15917953 | Msa0396980:CDS |
| ATCAAACAAAAGATGACAAA+GGG | 0.441607 | 3_2:-15917577 | Msa0396980:CDS |
| AGTGGAACCCATGCTCTTGC+CGG | 0.442622 | 3_2:-15923433 | None:intergenic |
| ACGTTACATTAGAGTGTGTC+TGG | 0.443288 | 3_2:-15918385 | Msa0396980:CDS |
| ACACTATCGAGTCTATTCTT+GGG | 0.448985 | 3_2:-15918253 | Msa0396980:CDS |
| TACTGAATTTGAAACAATTG+AGG | 0.464733 | 3_2:-15921629 | Msa0396980:CDS |
| ACCGGTAGGAAACTCCATTC+CGG | 0.467588 | 3_2:-15917728 | Msa0396980:CDS |
| CTATTTCCAGCATCTTATGA+AGG | 0.472658 | 3_2:-15921512 | Msa0396980:intron |
| AATAGGAACAGCGGCGGTGC+TGG | 0.473487 | 3_2:+15921530 | None:intergenic |
| GGATTTAAGGCTTCTGCAGT+TGG | 0.473619 | 3_2:-15921245 | Msa0396980:CDS |
| AATAACTCATGAGGGAATAG+AGG | 0.478056 | 3_2:-15918585 | Msa0396980:intron |
| AGCAGATGCTGCAGCTAAAG+AGG | 0.485173 | 3_2:-15917927 | Msa0396980:CDS |
| TACGTTGCAGCCTTCAGCAT+TGG | 0.487150 | 3_2:+15919648 | None:intergenic |
| TCTGCAGTTGGCAAACTTGG+AGG | 0.495185 | 3_2:-15921233 | Msa0396980:CDS |
| AAATGCCACCTTCTTCGAAC+CGG | 0.500567 | 3_2:+15917709 | None:intergenic |
| TAATCATCGTCATCACTAGC+AGG | 0.508322 | 3_2:+15918407 | None:intergenic |
| GAAAATGCAATGATGAAAAG+AGG | 0.510608 | 3_2:-15920739 | Msa0396980:CDS |
| GATAATTTATTAGGTGAGGA+GGG | 0.511623 | 3_2:-15921266 | Msa0396980:intron |
| CACCTGTTTCCGGGTCATGT+TGG | 0.511939 | 3_2:+15917951 | None:intergenic |
| GCATTATCACAGTCTTCAAC+CGG | 0.513144 | 3_2:-15917746 | Msa0396980:CDS |
| TCATACCTCCGGCAAGAGCA+TGG | 0.513368 | 3_2:+15923425 | None:intergenic |
| TGTTTCATGACAGCTTGAAA+AGG | 0.514585 | 3_2:-15920763 | Msa0396980:intron |
| TTTAGATTGCAAGGATTCGA+TGG | 0.520597 | 3_2:-15921653 | Msa0396980:CDS |
| ACTGAATTTGAAACAATTGA+GGG | 0.522339 | 3_2:-15921628 | Msa0396980:CDS |
| CATTGTTGATTTGTTCAACA+TGG | 0.528069 | 3_2:-15918642 | Msa0396980:CDS |
| ACTCCATTCCGGTTCGAAGA+AGG | 0.530166 | 3_2:-15917717 | Msa0396980:CDS |
| TACATACCTTCATAAGATGC+TGG | 0.531921 | 3_2:+15921506 | None:intergenic |
| TAAAATCATCGATTTGCGAC+GGG | 0.534590 | 3_2:+15917861 | None:intergenic |
| CCACCTTCTTCGAACCGGAA+TGG | 0.537805 | 3_2:+15917714 | None:intergenic |
| GCAGATAATAGCTCGGCTGT+TGG | 0.539928 | 3_2:-15921677 | Msa0396980:intron |
| CACTATCGAGTCTATTCTTG+GGG | 0.541164 | 3_2:-15918252 | Msa0396980:CDS |
| TGATAATTTATTAGGTGAGG+AGG | 0.543150 | 3_2:-15921267 | Msa0396980:intron |
| GCTGTTGGATTTAGATTGCA+AGG | 0.544705 | 3_2:-15921662 | Msa0396980:CDS |
| CAAGGATGCCACACTCACAT+TGG | 0.547673 | 3_2:+15921578 | None:intergenic |
| ACTGTGTTTGGTAGCGAGGA+AGG | 0.549590 | 3_2:-15917833 | Msa0396980:CDS |
| TTTGTTTGCAGATAATAGCT+CGG | 0.552614 | 3_2:-15921684 | Msa0396980:intron |
| GTGTGGCATCCTTGAAAGAT+TGG | 0.553976 | 3_2:-15921569 | Msa0396980:CDS |
| GAAAGTCAAGGTGAGGACTC+TGG | 0.554428 | 3_2:-15918314 | Msa0396980:CDS |
| TTTGGTGGTACTGGTACAGT+AGG | 0.557194 | 3_2:-15917443 | Msa0396980:three_prime_UTR |
| TATTTGTATCCTTGACATGA+GGG | 0.557999 | 3_2:+15917900 | None:intergenic |
| TTAGATTGCAAGGATTCGAT+GGG | 0.566475 | 3_2:-15921652 | Msa0396980:CDS |
| GGAGACTGTGTTTGGTAGCG+AGG | 0.571251 | 3_2:-15917837 | Msa0396980:CDS |
| CTCCATGAATCTTCACCAGA+GGG | 0.573969 | 3_2:-15917779 | Msa0396980:CDS |
| ACCGGAATGGAGTTTCCTAC+CGG | 0.578498 | 3_2:+15917727 | None:intergenic |
| TGTGTTAACTAGCAATGCTA+AGG | 0.578852 | 3_2:-15917633 | Msa0396980:CDS |
| CATACCTCCGGCAAGAGCAT+GGG | 0.579508 | 3_2:+15923426 | None:intergenic |
| AATGCATGCAAGTCACCCTC+TGG | 0.581592 | 3_2:+15917764 | None:intergenic |
| TGCAGATGACCAACATGACC+CGG | 0.583493 | 3_2:-15917960 | Msa0396980:intron |
| GTATTTGTATCCTTGACATG+AGG | 0.592724 | 3_2:+15917899 | None:intergenic |
| GATCAAACAAAAGATGACAA+AGG | 0.597416 | 3_2:-15917578 | Msa0396980:CDS |
| TTTGTATCCTTGACATGAGG+GGG | 0.599355 | 3_2:+15917902 | None:intergenic |
| ATAAGTATATATTACTTGAG+AGG | 0.601355 | 3_2:-15918355 | Msa0396980:CDS |
| ACTTACTAATGTAAATCCAA+AGG | 0.608539 | 3_2:-15917537 | Msa0396980:CDS |
| TCACAGCTCCAATGTGAGTG+TGG | 0.609139 | 3_2:-15921586 | Msa0396980:CDS |
| TGGTGAAGATTCATGGAGAG+AGG | 0.611678 | 3_2:+15917784 | None:intergenic |
| CCATTCCGGTTCGAAGAAGG+TGG | 0.616651 | 3_2:-15917714 | Msa0396980:CDS |
| ATAAAATCATCGATTTGCGA+CGG | 0.620309 | 3_2:+15917860 | None:intergenic |
| GGAGAATGAAAGTCAAGGTG+AGG | 0.625016 | 3_2:-15918321 | Msa0396980:CDS |
| ATTTGTATCCTTGACATGAG+GGG | 0.627428 | 3_2:+15917901 | None:intergenic |
| ATCTGCACGACTACTAGAAG+AGG | 0.629442 | 3_2:-15920693 | Msa0396980:intron |
| GGAACCCATGCTCTTGCCGG+AGG | 0.636085 | 3_2:-15923430 | None:intergenic |
| TCTCCATGAATCTTCACCAG+AGG | 0.640554 | 3_2:-15917780 | Msa0396980:CDS |
| GTACTACTTTGTACACATTG+TGG | 0.656666 | 3_2:+15917659 | None:intergenic |
| AATCATCGTCATCACTAGCA+GGG | 0.659881 | 3_2:+15918408 | None:intergenic |
| GATGGTTGAACCAATGCTGA+AGG | 0.663541 | 3_2:-15919658 | Msa0396980:CDS |
| GTGTTTGGTAGCGAGGAAGG+AGG | 0.667909 | 3_2:-15917830 | Msa0396980:CDS |
| GTCGTGCAGATCCTAAAAGA+CGG | 0.669319 | 3_2:+15920705 | None:intergenic |
| TATCACAGTCTTCAACCGGT+AGG | 0.674568 | 3_2:-15917742 | Msa0396980:CDS |
| GATGCTGGAAATAGGAACAG+CGG | 0.692299 | 3_2:+15921521 | None:intergenic |
| AGTCAAGGTGAGGACTCTGG+TGG | 0.692733 | 3_2:-15918311 | Msa0396980:CDS |
| ACACATTGTGGCACTAACGT+AGG | 0.699937 | 3_2:+15917671 | None:intergenic |
| GCTGGAAATAGGAACAGCGG+CGG | 0.714092 | 3_2:+15921524 | None:intergenic |
| TCAAACAAAAGATGACAAAG+GGG | 0.719091 | 3_2:-15917576 | Msa0396980:CDS |
| ACTATCGAGTCTATTCTTGG+GGG | 0.749201 | 3_2:-15918251 | Msa0396980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATGTTAAATAACTT+TGG | - | chr3_2:15917498-15917517 | Msa0396980:three_prime_UTR | 10.0% |
| !!! | AATATTTTTTAAACAAGTTT+TGG | - | chr3_2:15917558-15917577 | Msa0396980:CDS | 10.0% |
| !! | GAAAATCAAAATTAAAATAA+TGG | + | chr3_2:15918128-15918147 | None:intergenic | 10.0% |
| !! | AATTATAATACATAAAACAT+GGG | + | chr3_2:15921913-15921932 | None:intergenic | 10.0% |
| !! | TAATTATAATACATAAAACA+TGG | + | chr3_2:15921914-15921933 | None:intergenic | 10.0% |
| !!! | GAAAATTTTAGATATTTGTA+AGG | + | chr3_2:15917525-15917544 | None:intergenic | 15.0% |
| !! | CTTGTTTAAAAAATATTAGA+GGG | + | chr3_2:15917555-15917574 | None:intergenic | 15.0% |
| !! | ACTTGTTTAAAAAATATTAG+AGG | + | chr3_2:15917556-15917575 | None:intergenic | 15.0% |
| !! | TAAAATTTATTTAAGCAATG+AGG | - | chr3_2:15917732-15917751 | Msa0396980:CDS | 15.0% |
| !!! | TAATTCATTTGAAATATGAA+TGG | + | chr3_2:15917823-15917842 | None:intergenic | 15.0% |
| !!! | GTTAAAAAAAATCTGAATTT+TGG | + | chr3_2:15917884-15917903 | None:intergenic | 15.0% |
| !! | AAATTAAACTTGTAAAACTT+TGG | + | chr3_2:15918964-15918983 | None:intergenic | 15.0% |
| !! | TACTTCATAATTCATAATAT+AGG | - | chr3_2:15921297-15921316 | Msa0396980:intron | 15.0% |
| !!! | AATTAAATTTAACTTTGTCA+AGG | - | chr3_2:15921929-15921948 | Msa0396980:intron | 15.0% |
| !! | AGTAGAAATTTATTCTTAAT+TGG | - | chr3_2:15922696-15922715 | Msa0396980:intron | 15.0% |
| !!! | ATTAAAATAATGGAATAACC+TGG | + | chr3_2:15918118-15918137 | None:intergenic | 20.0% |
| !! | AGCTACAAATTTAATATGTT+AGG | - | chr3_2:15918392-15918411 | Msa0396980:CDS | 20.0% |
| !!! | ATTCGTTTTCTTTTTTACTA+GGG | + | chr3_2:15918883-15918902 | None:intergenic | 20.0% |
| !! | TTAAATATCCCTTATGTTTA+CGG | - | chr3_2:15918936-15918955 | Msa0396980:CDS | 20.0% |
| !! | TAATTATATTCAGCAACATT+TGG | + | chr3_2:15918999-15919018 | None:intergenic | 20.0% |
| !! | TGAATATAATTACTTGTGTA+TGG | - | chr3_2:15919007-15919026 | Msa0396980:intron | 20.0% |
| !!! | TATTATGAACTTTTGAAATG+CGG | + | chr3_2:15919033-15919052 | None:intergenic | 20.0% |
| !! | CATTTCAAAAGTTCATAATA+TGG | - | chr3_2:15919033-15919052 | Msa0396980:intron | 20.0% |
| !!! | ATGTGGTTTGATAATTTATT+AGG | - | chr3_2:15919524-15919543 | Msa0396980:intron | 20.0% |
| !!! | GTTATTTCTTTCAGTTTTTT+TGG | - | chr3_2:15919669-15919688 | Msa0396980:intron | 20.0% |
| !!! | AGTTTTTCTAATTATATGTG+TGG | - | chr3_2:15919692-15919711 | Msa0396980:intron | 20.0% |
| !! | TCAAAATGTGATGTTATTAT+AGG | - | chr3_2:15919976-15919995 | Msa0396980:intron | 20.0% |
| !! | TGATTGAAATAAGAAAAAAG+AGG | + | chr3_2:15921101-15921120 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATCGTATTTACA+GGG | + | chr3_2:15921384-15921403 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAATCGTATTTAC+AGG | + | chr3_2:15921385-15921404 | None:intergenic | 20.0% |
| !! | ATACGATTTCAAAAAACTTT+CGG | - | chr3_2:15921389-15921408 | Msa0396980:intron | 20.0% |
| !!! | CATATTTTTTCTGTATACTT+TGG | - | chr3_2:15921686-15921705 | Msa0396980:intron | 20.0% |
| !! | ATCAATAAAAATAACTCATG+AGG | - | chr3_2:15922205-15922224 | Msa0396980:intron | 20.0% |
| !! | TCAATAAAAATAACTCATGA+GGG | - | chr3_2:15922206-15922225 | Msa0396980:intron | 20.0% |
| !! | ATAAGTATATATTACTTGAG+AGG | - | chr3_2:15922444-15922463 | Msa0396980:intron | 20.0% |
| !!! | CAATTTTGTAATGAATCTTT+TGG | - | chr3_2:15923338-15923357 | Msa0396980:intron | 20.0% |
| !! | TTAAATTTTGCAAGAGAGAT+GGG | - | chr3_2:15917954-15917973 | Msa0396980:CDS | 25.0% |
| ! | TAATCACTTGTGATATTGTT+TGG | + | chr3_2:15918321-15918340 | None:intergenic | 25.0% |
| ! | AAGGTAAAGTTATGTTTGTT+TGG | - | chr3_2:15918587-15918606 | Msa0396980:CDS | 25.0% |
| ! | CAAAATCAATTATACTTCAG+AGG | - | chr3_2:15918712-15918731 | Msa0396980:intron | 25.0% |
| !!! | CATTCGTTTTCTTTTTTACT+AGG | + | chr3_2:15918884-15918903 | None:intergenic | 25.0% |
| !! | TACTGAATTTGAAACAATTG+AGG | - | chr3_2:15919170-15919189 | Msa0396980:intron | 25.0% |
| !! | ACTGAATTTGAAACAATTGA+GGG | - | chr3_2:15919171-15919190 | Msa0396980:intron | 25.0% |
| ! | ACAGTCAGATAAATAACTAA+GGG | + | chr3_2:15919413-15919432 | None:intergenic | 25.0% |
| ! | TACAGTCAGATAAATAACTA+AGG | + | chr3_2:15919414-15919433 | None:intergenic | 25.0% |
| ! | ATTTGTGTAGAAATTCGAAA+GGG | - | chr3_2:15919439-15919458 | Msa0396980:intron | 25.0% |
| !! | GTTTGATAATTTATTAGGTG+AGG | - | chr3_2:15919529-15919548 | Msa0396980:intron | 25.0% |
| !! | AAAAGATGAATCTTCTGTTT+TGG | + | chr3_2:15919633-15919652 | None:intergenic | 25.0% |
| !! | TTTTCTAATTATATGTGTGG+AGG | - | chr3_2:15919695-15919714 | Msa0396980:intron | 25.0% |
| ! | ATATTAAACGAAGATAACTG+AGG | - | chr3_2:15919728-15919747 | Msa0396980:intron | 25.0% |
| ! | TTTGTGGTTAAAGAAAAAGT+AGG | - | chr3_2:15919796-15919815 | Msa0396980:intron | 25.0% |
| !!! | TGATGAAAAGAGGAATTTTT+TGG | - | chr3_2:15920070-15920089 | Msa0396980:intron | 25.0% |
| !!! | TCGCAATCTTAGATTTTTTT+TGG | - | chr3_2:15920733-15920752 | Msa0396980:CDS | 25.0% |
| ! | GATTATGTAAACAAGTGATT+GGG | + | chr3_2:15920913-15920932 | None:intergenic | 25.0% |
| ! | TGATTATGTAAACAAGTGAT+TGG | + | chr3_2:15920914-15920933 | None:intergenic | 25.0% |
| ! | ATCATAGATTTAACCATAAG+AGG | - | chr3_2:15920930-15920949 | Msa0396980:intron | 25.0% |
| ! | TTCATTTATACTAATTGCTC+TGG | - | chr3_2:15921215-15921234 | Msa0396980:CDS | 25.0% |
| ! | TCATTTATACTAATTGCTCT+GGG | - | chr3_2:15921216-15921235 | Msa0396980:CDS | 25.0% |
| ! | TGAATTATGAAGTAAAAGAG+AGG | + | chr3_2:15921291-15921310 | None:intergenic | 25.0% |
| ! | TAATTCATAATATAGGTACC+AGG | - | chr3_2:15921304-15921323 | Msa0396980:intron | 25.0% |
| !!! | TTTTGAAATCGTATTTACAG+GGG | + | chr3_2:15921383-15921402 | None:intergenic | 25.0% |
| ! | TTACAGATCTTTGTTGAAAT+AGG | - | chr3_2:15921527-15921546 | Msa0396980:CDS | 25.0% |
| ! | TACAGATCTTTGTTGAAATA+GGG | - | chr3_2:15921528-15921547 | Msa0396980:CDS | 25.0% |
| !!! | ATTTTTTACCAGAAAAACTG+AGG | + | chr3_2:15921584-15921603 | None:intergenic | 25.0% |
| !!! | TGAAGCATTTTACCAAAATT+TGG | - | chr3_2:15921625-15921644 | Msa0396980:CDS | 25.0% |
| ! | TACAGAAAAAATATGACTCA+AGG | + | chr3_2:15921681-15921700 | None:intergenic | 25.0% |
| ! | ATCTCACTATTAAATAGTCA+AGG | + | chr3_2:15921794-15921813 | None:intergenic | 25.0% |
| ! | AGGTTTCATCATAGTTAAAT+TGG | - | chr3_2:15921949-15921968 | Msa0396980:intron | 25.0% |
| ! | AAATTGGAAGTTGTTTAATG+TGG | - | chr3_2:15921965-15921984 | Msa0396980:intron | 25.0% |
| ! | GAAGTACAAGTGATATTATT+TGG | - | chr3_2:15922023-15922042 | Msa0396980:intron | 25.0% |
| ! | AAGTAATATCTGCATAAGAA+TGG | + | chr3_2:15922135-15922154 | None:intergenic | 25.0% |
| ! | TGATAAATGTTTCGTTAACA+TGG | - | chr3_2:15922753-15922772 | Msa0396980:intron | 25.0% |
| ! | ATCAAACAAAAGATGACAAA+GGG | - | chr3_2:15923222-15923241 | Msa0396980:intron | 25.0% |
| ! | ACTTACTAATGTAAATCCAA+AGG | - | chr3_2:15923262-15923281 | Msa0396980:intron | 25.0% |
| !! | TTTTGTAATGAATCTTTTGG+TGG | - | chr3_2:15923341-15923360 | Msa0396980:intron | 25.0% |
| ! | AAAAGTCAATTCATTCTTCA+CGG | + | chr3_2:15923417-15923436 | None:intergenic | 25.0% |
| ! | GTTAAATTTTGCAAGAGAGA+TGG | - | chr3_2:15917953-15917972 | Msa0396980:CDS | 30.0% |
| !!! | TATACTAGTGTTTTGGAGAA+GGG | + | chr3_2:15918022-15918041 | None:intergenic | 30.0% |
| !!! | ATATACTAGTGTTTTGGAGA+AGG | + | chr3_2:15918023-15918042 | None:intergenic | 30.0% |
| ! | ACAAGGATATACTAGTGTTT+TGG | + | chr3_2:15918029-15918048 | None:intergenic | 30.0% |
| ! | AATAATGGAATAACCTGGAA+TGG | + | chr3_2:15918113-15918132 | None:intergenic | 30.0% |
| AAAGTCTCAGCAATAAAATG+TGG | + | chr3_2:15918444-15918463 | None:intergenic | 30.0% | |
| AACATGAGTAAGTGTATGTT+TGG | - | chr3_2:15918507-15918526 | Msa0396980:intron | 30.0% | |
| TAAGTGTATGTTTGGTTATG+CGG | - | chr3_2:15918515-15918534 | Msa0396980:intron | 30.0% | |
| !! | TCTAGCTAAAATTGAGTTGA+AGG | - | chr3_2:15918568-15918587 | Msa0396980:intron | 30.0% |
| TCAAGTATAATCCATTCTAG+AGG | - | chr3_2:15918689-15918708 | Msa0396980:intron | 30.0% | |
| !! | AATTGATTTTGCCTCTAGAA+TGG | + | chr3_2:15918703-15918722 | None:intergenic | 30.0% |
| !!! | TAGACCTCTAGAATCATTTT+TGG | - | chr3_2:15918759-15918778 | Msa0396980:intron | 30.0% |
| ATGTCAAATCGAGAAAACAT+AGG | - | chr3_2:15918901-15918920 | Msa0396980:intron | 30.0% | |
| TTTGTTTGCAGATAATAGCT+CGG | - | chr3_2:15919115-15919134 | Msa0396980:intron | 30.0% | |
| TCTTGTATACCAATCTTTCA+AGG | + | chr3_2:15919242-15919261 | None:intergenic | 30.0% | |
| GATTTGTGTAGAAATTCGAA+AGG | - | chr3_2:15919438-15919457 | Msa0396980:intron | 30.0% | |
| TGTATTTACGAGTCATTATG+TGG | - | chr3_2:15919507-15919526 | Msa0396980:intron | 30.0% | |
| TGATAATTTATTAGGTGAGG+AGG | - | chr3_2:15919532-15919551 | Msa0396980:intron | 30.0% | |
| GATAATTTATTAGGTGAGGA+GGG | - | chr3_2:15919533-15919552 | Msa0396980:intron | 30.0% | |
| !! | AGAAGATTCATCTTTTAGAG+AGG | - | chr3_2:15919637-15919656 | Msa0396980:intron | 30.0% |
| GAAAGCAATAACCAAATGAA+GGG | + | chr3_2:15919926-15919945 | None:intergenic | 30.0% | |
| AGAAAGCAATAACCAAATGA+AGG | + | chr3_2:15919927-15919946 | None:intergenic | 30.0% | |
| ATGTGATGTTATTATAGGCA+TGG | - | chr3_2:15919981-15920000 | Msa0396980:intron | 30.0% | |
| GAAAATGCAATGATGAAAAG+AGG | - | chr3_2:15920060-15920079 | Msa0396980:intron | 30.0% | |
| !!! | AATTTTTTGGACCGTCTTTT+AGG | - | chr3_2:15920083-15920102 | Msa0396980:intron | 30.0% |
| ACACATTAACTAATGCTGAT+AGG | - | chr3_2:15920278-15920297 | Msa0396980:intron | 30.0% | |
| CACATTAACTAATGCTGATA+GGG | - | chr3_2:15920279-15920298 | Msa0396980:intron | 30.0% | |
| CTATCAGAAAGGACTAAAAA+AGG | + | chr3_2:15920544-15920563 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAGTCCTTTCTGAT+AGG | - | chr3_2:15920542-15920561 | Msa0396980:intron | 30.0% |
| ATCCCAATTTGCATTTGATA+GGG | + | chr3_2:15920695-15920714 | None:intergenic | 30.0% | |
| AATCCCAATTTGCATTTGAT+AGG | + | chr3_2:15920696-15920715 | None:intergenic | 30.0% | |
| ATTCTCTCCAGTGTTAATTT+GGG | - | chr3_2:15921009-15921028 | Msa0396980:intron | 30.0% | |
| ATTATACCGCAATCAAGATA+TGG | + | chr3_2:15921255-15921274 | None:intergenic | 30.0% | |
| CTAAACTCGTAAGTATCATT+TGG | + | chr3_2:15921338-15921357 | None:intergenic | 30.0% | |
| !! | GCACATAGAAAATTTTAGCA+CGG | + | chr3_2:15921453-15921472 | None:intergenic | 30.0% |
| ! | GCATTTTACCAAAATTTGGT+TGG | - | chr3_2:15921629-15921648 | Msa0396980:CDS | 30.0% |
| ! | TCATAGAACCAACCAAATTT+TGG | + | chr3_2:15921640-15921659 | None:intergenic | 30.0% |
| !!! | TTTGCTCGATCCTTTTTTAT+GGG | - | chr3_2:15921824-15921843 | Msa0396980:intron | 30.0% |
| AGAATGGAAAAACGATCAAT+CGG | + | chr3_2:15922119-15922138 | None:intergenic | 30.0% | |
| !! | CATTGTTGATTTGTTCAACA+TGG | - | chr3_2:15922157-15922176 | Msa0396980:intron | 30.0% |
| ! | TGATTGCTTCTTTTTAGACA+GGG | + | chr3_2:15922189-15922208 | None:intergenic | 30.0% |
| ! | TTGATTGCTTCTTTTTAGAC+AGG | + | chr3_2:15922190-15922209 | None:intergenic | 30.0% |
| GTATACAACAGAGAATTTAG+TGG | + | chr3_2:15922256-15922275 | None:intergenic | 30.0% | |
| ATGATGTATACTACTGAATC+AGG | - | chr3_2:15922352-15922371 | Msa0396980:intron | 30.0% | |
| AAAAAGGAGAATGAAAGTCA+AGG | - | chr3_2:15922473-15922492 | Msa0396980:intron | 30.0% | |
| TATTTGTATCCTTGACATGA+GGG | + | chr3_2:15922902-15922921 | None:intergenic | 30.0% | |
| !! | ATAAAATCATCGATTTGCGA+CGG | + | chr3_2:15922942-15922961 | None:intergenic | 30.0% |
| GCTAAGTCATTCCATTTAAT+GGG | - | chr3_2:15923188-15923207 | Msa0396980:intron | 30.0% | |
| CACTTTCATTTCCCATTAAA+TGG | + | chr3_2:15923202-15923221 | None:intergenic | 30.0% | |
| GATCAAACAAAAGATGACAA+AGG | - | chr3_2:15923221-15923240 | Msa0396980:intron | 30.0% | |
| TCAAACAAAAGATGACAAAG+GGG | - | chr3_2:15923223-15923242 | Msa0396980:intron | 30.0% | |
| GCTTAAAAAAGACTATCCTT+TGG | + | chr3_2:15923281-15923300 | None:intergenic | 30.0% | |
| GCGTATAATATGTTGTCGTA+TGG | + | chr3_2:15917678-15917697 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTCTGCAACACA+AGG | + | chr3_2:15918046-15918065 | None:intergenic | 35.0% |
| ! | TCTCAAAGTTTCGTTGATTG+CGG | - | chr3_2:15918463-15918482 | Msa0396980:intron | 35.0% |
| !! | TTTACGTTTGGTTCCACTTT+TGG | + | chr3_2:15918790-15918809 | None:intergenic | 35.0% |
| TTTAGATTGCAAGGATTCGA+TGG | - | chr3_2:15919146-15919165 | Msa0396980:intron | 35.0% | |
| TTAGATTGCAAGGATTCGAT+GGG | - | chr3_2:15919147-15919166 | Msa0396980:intron | 35.0% | |
| CTTCATAAGATGCTGGAAAT+AGG | + | chr3_2:15919289-15919308 | None:intergenic | 35.0% | |
| CTATTTCCAGCATCTTATGA+AGG | - | chr3_2:15919287-15919306 | Msa0396980:intron | 35.0% | |
| TACATACCTTCATAAGATGC+TGG | + | chr3_2:15919296-15919315 | None:intergenic | 35.0% | |
| ACAATGATGTGAGATTGCTT+AGG | - | chr3_2:15919351-15919370 | Msa0396980:intron | 35.0% | |
| GTTATTTATCTGACTGTAGC+TGG | - | chr3_2:15919416-15919435 | Msa0396980:intron | 35.0% | |
| !! | GATTCATCTTTTAGAGAGGT+AGG | - | chr3_2:15919641-15919660 | Msa0396980:intron | 35.0% |
| TTAAACGAAGATAACTGAGG+AGG | - | chr3_2:15919731-15919750 | Msa0396980:intron | 35.0% | |
| ! | AATTACAGTCCTCTGAGAAA+TGG | - | chr3_2:15919852-15919871 | Msa0396980:intron | 35.0% |
| ! | TTTCTAACTTGCCCTTCATT+TGG | - | chr3_2:15919912-15919931 | Msa0396980:intron | 35.0% |
| TGTTTCATGACAGCTTGAAA+AGG | - | chr3_2:15920036-15920055 | Msa0396980:intron | 35.0% | |
| AGAAAGGACTAAAAAAGGAG+GGG | + | chr3_2:15920539-15920558 | None:intergenic | 35.0% | |
| CAGAAAGGACTAAAAAAGGA+GGG | + | chr3_2:15920540-15920559 | None:intergenic | 35.0% | |
| TCAGAAAGGACTAAAAAAGG+AGG | + | chr3_2:15920541-15920560 | None:intergenic | 35.0% | |
| ATTTGCATTTGATAGGGACT+CGG | + | chr3_2:15920689-15920708 | None:intergenic | 35.0% | |
| AGTCCCTATCAAATGCAAAT+TGG | - | chr3_2:15920689-15920708 | Msa0396980:intron | 35.0% | |
| GTCCCTATCAAATGCAAATT+GGG | - | chr3_2:15920690-15920709 | Msa0396980:intron | 35.0% | |
| CTAAGATTGCGATTTATGCA+GGG | + | chr3_2:15920725-15920744 | None:intergenic | 35.0% | |
| ! | TCTAAGATTGCGATTTATGC+AGG | + | chr3_2:15920726-15920745 | None:intergenic | 35.0% |
| GATTCTCTCCAGTGTTAATT+TGG | - | chr3_2:15921008-15921027 | Msa0396980:intron | 35.0% | |
| ATCCTTCTACTAGTATCATG+TGG | - | chr3_2:15921173-15921192 | Msa0396980:CDS | 35.0% | |
| AACCACATGATACTAGTAGA+AGG | + | chr3_2:15921178-15921197 | None:intergenic | 35.0% | |
| TATCATTTGGTAAGATCACC+TGG | + | chr3_2:15921325-15921344 | None:intergenic | 35.0% | |
| ACTTATAACAGAGATGCAGA+AGG | + | chr3_2:15921508-15921527 | None:intergenic | 35.0% | |
| ! | AGGAACTTCAGTTTTCATAC+TGG | - | chr3_2:15921554-15921573 | Msa0396980:CDS | 35.0% |
| TTCAGAATCTCACAACTTTG+AGG | + | chr3_2:15921609-15921628 | None:intergenic | 35.0% | |
| TTGGTTAGAAATTGTTACCG+TGG | - | chr3_2:15921705-15921724 | Msa0396980:intron | 35.0% | |
| AAGCATGCACTAAATGATAC+TGG | + | chr3_2:15921737-15921756 | None:intergenic | 35.0% | |
| !!! | GTTTGCTCGATCCTTTTTTA+TGG | - | chr3_2:15921823-15921842 | Msa0396980:intron | 35.0% |
| CACAGAAAGTCCCATAAAAA+AGG | + | chr3_2:15921837-15921856 | None:intergenic | 35.0% | |
| GAATGGAAAAACGATCAATC+GGG | + | chr3_2:15922118-15922137 | None:intergenic | 35.0% | |
| AATAACTCATGAGGGAATAG+AGG | - | chr3_2:15922214-15922233 | Msa0396980:intron | 35.0% | |
| ! | ACTTGAGAGGAAGCATAAAA+AGG | - | chr3_2:15922457-15922476 | Msa0396980:intron | 35.0% |
| AATCTTTCTGTTCAAGCATC+AGG | - | chr3_2:15922512-15922531 | Msa0396980:intron | 35.0% | |
| ACACTATCGAGTCTATTCTT+GGG | - | chr3_2:15922546-15922565 | Msa0396980:intron | 35.0% | |
| TAACAGAAATGAGCACATCA+TGG | + | chr3_2:15922580-15922599 | None:intergenic | 35.0% | |
| TAATTGGTGCATTGTTCAGT+TGG | - | chr3_2:15922712-15922731 | Msa0396980:intron | 35.0% | |
| ! | GAGAGTTGTCTTGTTAAACA+TGG | - | chr3_2:15922802-15922821 | Msa0396980:intron | 35.0% |
| ATTTGTATCCTTGACATGAG+GGG | + | chr3_2:15922901-15922920 | None:intergenic | 35.0% | |
| GTATTTGTATCCTTGACATG+AGG | + | chr3_2:15922903-15922922 | None:intergenic | 35.0% | |
| !! | TAAAATCATCGATTTGCGAC+GGG | + | chr3_2:15922941-15922960 | None:intergenic | 35.0% |
| ! | GTCGCAAATCGATGATTTTA+TGG | - | chr3_2:15922941-15922960 | Msa0396980:intron | 35.0% |
| ! | GATTTTATGGAGACTGTGTT+TGG | - | chr3_2:15922954-15922973 | Msa0396980:intron | 35.0% |
| GTACTACTTTGTACACATTG+TGG | + | chr3_2:15923143-15923162 | None:intergenic | 35.0% | |
| TGTGTTAACTAGCAATGCTA+AGG | - | chr3_2:15923166-15923185 | Msa0396980:intron | 35.0% | |
| GGCTAAGTCATTCCATTTAA+TGG | - | chr3_2:15923187-15923206 | Msa0396980:intron | 35.0% | |
| !! | AATGAATCTTTTGGTGGTAC+TGG | - | chr3_2:15923347-15923366 | Msa0396980:intron | 35.0% |
| ! | AAACAGTTGACTCATACCTC+CGG | + | chr3_2:15917388-15917407 | None:intergenic | 40.0% |
| AGATCACGACAACATCTTGA+TGG | - | chr3_2:15917649-15917668 | Msa0396980:CDS | 40.0% | |
| TGCAGAAACCAAAAACTGTC+CGG | - | chr3_2:15918051-15918070 | Msa0396980:intron | 40.0% | |
| ATACTTCAGAGGAACCAAAC+AGG | - | chr3_2:15918723-15918742 | Msa0396980:intron | 40.0% | |
| TACTTCAGAGGAACCAAACA+GGG | - | chr3_2:15918724-15918743 | Msa0396980:intron | 40.0% | |
| GGAGCCAAAAATGATTCTAG+AGG | + | chr3_2:15918766-15918785 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGCTCCTCCAAAAG+TGG | - | chr3_2:15918774-15918793 | Msa0396980:intron | 40.0% |
| AGTGGAACCAAACGTAAACA+TGG | - | chr3_2:15918792-15918811 | Msa0396980:intron | 40.0% | |
| GTGGAACCAAACGTAAACAT+GGG | - | chr3_2:15918793-15918812 | Msa0396980:intron | 40.0% | |
| ACCAAACGTAAACATGGGAA+AGG | - | chr3_2:15918798-15918817 | Msa0396980:intron | 40.0% | |
| ACCTTTCCCATGTTTACGTT+TGG | + | chr3_2:15918802-15918821 | None:intergenic | 40.0% | |
| !! | CATGGGAAAGGTATTTGATG+AGG | - | chr3_2:15918810-15918829 | Msa0396980:intron | 40.0% |
| !! | AAAGGTATTTGATGAGGCGA+GGG | - | chr3_2:15918816-15918835 | Msa0396980:intron | 40.0% |
| CTTTGGCACCGTAAACATAA+GGG | + | chr3_2:15918947-15918966 | None:intergenic | 40.0% | |
| ACTTTGGCACCGTAAACATA+AGG | + | chr3_2:15918948-15918967 | None:intergenic | 40.0% | |
| GCTGTTGGATTTAGATTGCA+AGG | - | chr3_2:15919137-15919156 | Msa0396980:intron | 40.0% | |
| ATTAGGTGAGGAGGGATTTA+AGG | - | chr3_2:15919541-15919560 | Msa0396980:intron | 40.0% | |
| CTGAGTGTCTTACATGTTTG+TGG | - | chr3_2:15919780-15919799 | Msa0396980:intron | 40.0% | |
| ATGCATAGAGCATGACTATG+AGG | - | chr3_2:15920250-15920269 | Msa0396980:intron | 40.0% | |
| AACTAATGCTGATAGGGACT+TGG | - | chr3_2:15920285-15920304 | Msa0396980:intron | 40.0% | |
| ACTAATGCTGATAGGGACTT+GGG | - | chr3_2:15920286-15920305 | Msa0396980:intron | 40.0% | |
| TGATAGGGACTTGGGTATTA+TGG | - | chr3_2:15920294-15920313 | Msa0396980:intron | 40.0% | |
| GATAGGGACTTGGGTATTAT+GGG | - | chr3_2:15920295-15920314 | Msa0396980:intron | 40.0% | |
| ATAGGGACTTGGGTATTATG+GGG | - | chr3_2:15920296-15920315 | Msa0396980:intron | 40.0% | |
| AGTCCCACATTGAGTATTAG+AGG | - | chr3_2:15920325-15920344 | Msa0396980:intron | 40.0% | |
| GTCCCACATTGAGTATTAGA+GGG | - | chr3_2:15920326-15920345 | Msa0396980:intron | 40.0% | |
| CACCCTCTAATACTCAATGT+GGG | + | chr3_2:15920331-15920350 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGAATTATG+GGG | + | chr3_2:15920440-15920459 | None:intergenic | 40.0% | |
| GATAGGGACTTGGGAATTAT+GGG | + | chr3_2:15920441-15920460 | None:intergenic | 40.0% | |
| TGATAGGGACTTGGGAATTA+TGG | + | chr3_2:15920442-15920461 | None:intergenic | 40.0% | |
| AATTGTTAAGTACAGCCGTC+GGG | + | chr3_2:15920493-15920512 | None:intergenic | 40.0% | |
| GAATTGTTAAGTACAGCCGT+CGG | + | chr3_2:15920494-15920513 | None:intergenic | 40.0% | |
| TGCTTGGATACCTATCAGAA+AGG | + | chr3_2:15920555-15920574 | None:intergenic | 40.0% | |
| ! | TGCTTGGTGGAGTATTTAAG+TGG | + | chr3_2:15920625-15920644 | None:intergenic | 40.0% |
| ATCATGTAGTATGGGATGCT+TGG | + | chr3_2:15920641-15920660 | None:intergenic | 40.0% | |
| CATCCCATACTACATGATGT+GGG | - | chr3_2:15920643-15920662 | Msa0396980:intron | 40.0% | |
| AGTCCCACATCATGTAGTAT+GGG | + | chr3_2:15920649-15920668 | None:intergenic | 40.0% | |
| AAGTCCCACATCATGTAGTA+TGG | + | chr3_2:15920650-15920669 | None:intergenic | 40.0% | |
| ATACTACATGATGTGGGACT+TGG | - | chr3_2:15920649-15920668 | Msa0396980:intron | 40.0% | |
| TTTGCATTTGATAGGGACTC+GGG | + | chr3_2:15920688-15920707 | None:intergenic | 40.0% | |
| TTCCTGATGGGAACAGTTAT+TGG | + | chr3_2:15920833-15920852 | None:intergenic | 40.0% | |
| TTCCCATCAGGAATCATACT+CGG | - | chr3_2:15920840-15920859 | Msa0396980:intron | 40.0% | |
| TGGTTAATGAGCTCCTCTTA+TGG | + | chr3_2:15920884-15920903 | None:intergenic | 40.0% | |
| TCATTAACCACTTGGGATCT+AGG | - | chr3_2:15920956-15920975 | Msa0396980:intron | 40.0% | |
| ! | TCTCCAGTGTTAATTTGGGT+GGG | - | chr3_2:15921013-15921032 | Msa0396980:intron | 40.0% |
| ! | ATTGGTTCAACCATCTGCAT+GGG | + | chr3_2:15921136-15921155 | None:intergenic | 40.0% |
| ! | TTGCTCTGGGTTTAGTTGAT+TGG | - | chr3_2:15921229-15921248 | Msa0396980:CDS | 40.0% |
| ! | GATTGGCCATATCTTGATTG+CGG | - | chr3_2:15921246-15921265 | Msa0396980:CDS | 40.0% |
| TCTTTGTTGAAATAGGGAGC+AGG | - | chr3_2:15921534-15921553 | Msa0396980:CDS | 40.0% | |
| ! | CTGGATAACCTCAGTTTTTC+TGG | - | chr3_2:15921573-15921592 | Msa0396980:CDS | 40.0% |
| GGGACTTTCTGTGACAATTA+TGG | - | chr3_2:15921844-15921863 | Msa0396980:intron | 40.0% | |
| !! | AGGGAATAGAGGTTAGTTTG+TGG | - | chr3_2:15922225-15922244 | Msa0396980:intron | 40.0% |
| !! | GGGAATAGAGGTTAGTTTGT+GGG | - | chr3_2:15922226-15922245 | Msa0396980:intron | 40.0% |
| AATCATCGTCATCACTAGCA+GGG | + | chr3_2:15922394-15922413 | None:intergenic | 40.0% | |
| TAATCATCGTCATCACTAGC+AGG | + | chr3_2:15922395-15922414 | None:intergenic | 40.0% | |
| ACGTTACATTAGAGTGTGTC+TGG | - | chr3_2:15922414-15922433 | Msa0396980:intron | 40.0% | |
| GACACTATCGAGTCTATTCT+TGG | - | chr3_2:15922545-15922564 | Msa0396980:intron | 40.0% | |
| CACTATCGAGTCTATTCTTG+GGG | - | chr3_2:15922547-15922566 | Msa0396980:intron | 40.0% | |
| ACTATCGAGTCTATTCTTGG+GGG | - | chr3_2:15922548-15922567 | Msa0396980:intron | 40.0% | |
| AACAAGTAACAACTGCCCTT+AGG | - | chr3_2:15922653-15922672 | Msa0396980:intron | 40.0% | |
| ACAAGTAACAACTGCCCTTA+GGG | - | chr3_2:15922654-15922673 | Msa0396980:intron | 40.0% | |
| ! | CTTTTTATCCAGTGCCCTAA+GGG | + | chr3_2:15922671-15922690 | None:intergenic | 40.0% |
| ! | ACTTTTTATCCAGTGCCCTA+AGG | + | chr3_2:15922672-15922691 | None:intergenic | 40.0% |
| TTTGTATCCTTGACATGAGG+GGG | + | chr3_2:15922900-15922919 | None:intergenic | 40.0% | |
| GCATTATCACAGTCTTCAAC+CGG | - | chr3_2:15923053-15923072 | Msa0396980:intron | 40.0% | |
| ATGCCACATAACACGTTGTG+CGG | - | chr3_2:15917757-15917776 | Msa0396980:CDS | 45.0% | |
| !!! | CTAGTGTTTTGGAGAAGGGT+AGG | + | chr3_2:15918018-15918037 | None:intergenic | 45.0% |
| ! | TGCGTTTTCCGGACAGTTTT+TGG | + | chr3_2:15918062-15918081 | None:intergenic | 45.0% |
| AGAGTTGAGTTTGCCCTGTT+TGG | + | chr3_2:15918740-15918759 | None:intergenic | 45.0% | |
| !! | ACGTTTGGTTCCACTTTTGG+AGG | + | chr3_2:15918787-15918806 | None:intergenic | 45.0% |
| !! | GAAAGGTATTTGATGAGGCG+AGG | - | chr3_2:15918815-15918834 | Msa0396980:intron | 45.0% |
| ! | AAGGTATTTGATGAGGCGAG+GGG | - | chr3_2:15918817-15918836 | Msa0396980:intron | 45.0% |
| GTGTGGCATCCTTGAAAGAT+TGG | - | chr3_2:15919230-15919249 | Msa0396980:intron | 45.0% | |
| GATGCTGGAAATAGGAACAG+CGG | + | chr3_2:15919281-15919300 | None:intergenic | 45.0% | |
| ! | GGATTTAAGGCTTCTGCAGT+TGG | - | chr3_2:15919554-15919573 | Msa0396980:intron | 45.0% |
| GTCGTGCAGATCCTAAAAGA+CGG | + | chr3_2:15920097-15920116 | None:intergenic | 45.0% | |
| ATCTGCACGACTACTAGAAG+AGG | - | chr3_2:15920106-15920125 | Msa0396980:intron | 45.0% | |
| TCATTGTGTTTCGACTGTGC+TGG | - | chr3_2:15920204-15920223 | Msa0396980:intron | 45.0% | |
| GCACCCTCTAATACTCAATG+TGG | + | chr3_2:15920332-15920351 | None:intergenic | 45.0% | |
| !! | TGCTCGATGGAGTTTTGATG+TGG | + | chr3_2:15920387-15920406 | None:intergenic | 45.0% |
| AAGTAGAATGGGATGCTCGA+TGG | + | chr3_2:15920400-15920419 | None:intergenic | 45.0% | |
| GCATCCCATTCTACTTGATG+CGG | - | chr3_2:15920404-15920423 | Msa0396980:intron | 45.0% | |
| CATCCCATTCTACTTGATGC+GGG | - | chr3_2:15920405-15920424 | Msa0396980:intron | 45.0% | |
| AGTCCCGCATCAAGTAGAAT+GGG | + | chr3_2:15920411-15920430 | None:intergenic | 45.0% | |
| AAGTCCCGCATCAAGTAGAA+TGG | + | chr3_2:15920412-15920431 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTGATAGGGACTT+GGG | + | chr3_2:15920450-15920469 | None:intergenic | 45.0% |
| AAAGGAGGGGATGACTAGAA+AGG | + | chr3_2:15920526-15920545 | None:intergenic | 45.0% | |
| ! | CCTCGATAGCTAGCTTCAAA+GGG | + | chr3_2:15920589-15920608 | None:intergenic | 45.0% |
| !! | CCTTTGAAGCTAGCTATCGA+GGG | - | chr3_2:15920587-15920606 | Msa0396980:intron | 45.0% |
| !! | CTTTGAAGCTAGCTATCGAG+GGG | - | chr3_2:15920588-15920607 | Msa0396980:intron | 45.0% |
| ! | TTTGAAGCTAGCTATCGAGG+GGG | - | chr3_2:15920589-15920608 | Msa0396980:intron | 45.0% |
| ATGTAGTATGGGATGCTTGG+TGG | + | chr3_2:15920638-15920657 | None:intergenic | 45.0% | |
| GCATCCCATACTACATGATG+TGG | - | chr3_2:15920642-15920661 | Msa0396980:intron | 45.0% | |
| ATAGGGACTCGGGTATTATG+TGG | + | chr3_2:15920678-15920697 | None:intergenic | 45.0% | |
| TGTTAACCCTCCCGTACATA+GGG | - | chr3_2:15920756-15920775 | Msa0396980:intron | 45.0% | |
| TCCCATCAGGAATCATACTC+GGG | - | chr3_2:15920841-15920860 | Msa0396980:intron | 45.0% | |
| ACCCGAGTATGATTCCTGAT+GGG | + | chr3_2:15920845-15920864 | None:intergenic | 45.0% | |
| AACCCGAGTATGATTCCTGA+TGG | + | chr3_2:15920846-15920865 | None:intergenic | 45.0% | |
| CCTCTTATGACGAATCGTTC+AGG | + | chr3_2:15920871-15920890 | None:intergenic | 45.0% | |
| CCTGAACGATTCGTCATAAG+AGG | - | chr3_2:15920868-15920887 | Msa0396980:intron | 45.0% | |
| AACAAGTGATTGGGCTCAAG+TGG | + | chr3_2:15920904-15920923 | None:intergenic | 45.0% | |
| AGAGGAGCTCATTAACCACT+TGG | - | chr3_2:15920886-15920905 | Msa0396980:intron | 45.0% | |
| GAGGAGCTCATTAACCACTT+GGG | - | chr3_2:15920887-15920906 | Msa0396980:intron | 45.0% | |
| ! | CTCTCCAGTGTTAATTTGGG+TGG | - | chr3_2:15921012-15921031 | Msa0396980:intron | 45.0% |
| TAGCCCACCCAAATTAACAC+TGG | + | chr3_2:15921019-15921038 | None:intergenic | 45.0% | |
| ! | GTTCTGTTTTCCCATGCAGA+TGG | - | chr3_2:15921123-15921142 | Msa0396980:intron | 45.0% |
| !! | CATTGGTTCAACCATCTGCA+TGG | + | chr3_2:15921137-15921156 | None:intergenic | 45.0% |
| GATGGTTGAACCAATGCTGA+AGG | - | chr3_2:15921141-15921160 | Msa0396980:intron | 45.0% | |
| AATGATACTGGAGCTGACCA+CGG | + | chr3_2:15921725-15921744 | None:intergenic | 45.0% | |
| AATGTGGTACACTGATGCTG+AGG | - | chr3_2:15921981-15922000 | Msa0396980:intron | 45.0% | |
| GGAGAATGAAAGTCAAGGTG+AGG | - | chr3_2:15922478-15922497 | Msa0396980:intron | 45.0% | |
| TGGTGAAGATTCATGGAGAG+AGG | + | chr3_2:15923018-15923037 | None:intergenic | 45.0% | |
| TCTCCATGAATCTTCACCAG+AGG | - | chr3_2:15923019-15923038 | Msa0396980:intron | 45.0% | |
| CTCCATGAATCTTCACCAGA+GGG | - | chr3_2:15923020-15923039 | Msa0396980:intron | 45.0% | |
| TATCACAGTCTTCAACCGGT+AGG | - | chr3_2:15923057-15923076 | Msa0396980:intron | 45.0% | |
| AAATGCCACCTTCTTCGAAC+CGG | + | chr3_2:15923093-15923112 | None:intergenic | 45.0% | |
| ACACATTGTGGCACTAACGT+AGG | + | chr3_2:15923131-15923150 | None:intergenic | 45.0% | |
| !! | TTTGGTGGTACTGGTACAGT+AGG | - | chr3_2:15923356-15923375 | Msa0396980:intron | 45.0% |
| TGCCACATAACACGTTGTGC+GGG | - | chr3_2:15917758-15917777 | Msa0396980:CDS | 50.0% | |
| AATGGATGAACCAACTCCGC+CGG | + | chr3_2:15918095-15918114 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTTCATCCATTCC+AGG | - | chr3_2:15918097-15918116 | Msa0396980:intron | 50.0% |
| GGACGACAATGAGTCAGGAT+GGG | + | chr3_2:15918862-15918881 | None:intergenic | 50.0% | |
| ACTAGGGACGACAATGAGTC+AGG | + | chr3_2:15918867-15918886 | None:intergenic | 50.0% | |
| GCAGATAATAGCTCGGCTGT+TGG | - | chr3_2:15919122-15919141 | Msa0396980:intron | 50.0% | |
| TCACAGCTCCAATGTGAGTG+TGG | - | chr3_2:15919213-15919232 | Msa0396980:intron | 50.0% | |
| CAAGGATGCCACACTCACAT+TGG | + | chr3_2:15919224-15919243 | None:intergenic | 50.0% | |
| GCTTCTGCAGTTGGCAAACT+TGG | - | chr3_2:15919563-15919582 | Msa0396980:intron | 50.0% | |
| TCTGCAGTTGGCAAACTTGG+AGG | - | chr3_2:15919566-15919585 | Msa0396980:intron | 50.0% | |
| ! | GTGGTTCTGTGATAGGGACT+TGG | + | chr3_2:15920451-15920470 | None:intergenic | 50.0% |
| TCCCTATCACAGAACCACCT+CGG | - | chr3_2:15920453-15920472 | Msa0396980:intron | 50.0% | |
| ! | TCCGAGGTGGTTCTGTGATA+GGG | + | chr3_2:15920457-15920476 | None:intergenic | 50.0% |
| ! | TTCCGAGGTGGTTCTGTGAT+AGG | + | chr3_2:15920458-15920477 | None:intergenic | 50.0% |
| TATCACAGAACCACCTCGGA+AGG | - | chr3_2:15920457-15920476 | Msa0396980:intron | 50.0% | |
| AGGGGATGACTAGAAAGGTC+AGG | + | chr3_2:15920521-15920540 | None:intergenic | 50.0% | |
| ! | CGATAGCTAGCTTCAAAGGG+AGG | + | chr3_2:15920586-15920605 | None:intergenic | 50.0% |
| !! | CCCTTTGAAGCTAGCTATCG+AGG | - | chr3_2:15920586-15920605 | Msa0396980:intron | 50.0% |
| ! | CCCTCGATAGCTAGCTTCAA+AGG | + | chr3_2:15920590-15920609 | None:intergenic | 50.0% |
| GTGTTAACCCTCCCGTACAT+AGG | - | chr3_2:15920755-15920774 | Msa0396980:intron | 50.0% | |
| GTTAACCCTCCCGTACATAG+GGG | - | chr3_2:15920757-15920776 | Msa0396980:intron | 50.0% | |
| AGCCGAACTCCGGATTACTA+GGG | + | chr3_2:15920790-15920809 | None:intergenic | 50.0% | |
| GCTGGCAGGTAAGTAAAGTC+TGG | - | chr3_2:15920807-15920826 | Msa0396980:intron | 50.0% | |
| GGCCAATAACTGTTCCCATC+AGG | - | chr3_2:15920828-15920847 | Msa0396980:intron | 50.0% | |
| GAATCGAACATGAGACCTCG+AGG | + | chr3_2:15920993-15921012 | None:intergenic | 50.0% | |
| TACGTTGCAGCCTTCAGCAT+TGG | + | chr3_2:15921154-15921173 | None:intergenic | 50.0% | |
| ! | GCTAGCACGTCTACGAGTTT+TGG | - | chr3_2:15921871-15921890 | Msa0396980:intron | 50.0% |
| GAAAGTCAAGGTGAGGACTC+TGG | - | chr3_2:15922485-15922504 | Msa0396980:intron | 50.0% | |
| TGCAGATGACCAACATGACC+CGG | - | chr3_2:15922839-15922858 | Msa0396980:intron | 50.0% | |
| CATCTGCTTCACCTGTTTCC+GGG | + | chr3_2:15922860-15922879 | None:intergenic | 50.0% | |
| GCATCTGCTTCACCTGTTTC+CGG | + | chr3_2:15922861-15922880 | None:intergenic | 50.0% | |
| AGCAGATGCTGCAGCTAAAG+AGG | - | chr3_2:15922872-15922891 | Msa0396980:intron | 50.0% | |
| !! | ACTGTGTTTGGTAGCGAGGA+AGG | - | chr3_2:15922966-15922985 | Msa0396980:intron | 50.0% |
| CACCCTCTGGTGAAGATTCA+TGG | + | chr3_2:15923025-15923044 | None:intergenic | 50.0% | |
| AATGCATGCAAGTCACCCTC+TGG | + | chr3_2:15923038-15923057 | None:intergenic | 50.0% | |
| ACCGGTAGGAAACTCCATTC+CGG | - | chr3_2:15923071-15923090 | Msa0396980:intron | 50.0% | |
| ACCGGAATGGAGTTTCCTAC+CGG | + | chr3_2:15923075-15923094 | None:intergenic | 50.0% | |
| ! | ACTCCATTCCGGTTCGAAGA+AGG | - | chr3_2:15923082-15923101 | Msa0396980:intron | 50.0% |
| GACCCGCACAACGTGTTATG+TGG | + | chr3_2:15917763-15917782 | None:intergenic | 55.0% | |
| ! | GCAAGTCTGCGTGCGTTTTC+CGG | + | chr3_2:15918073-15918092 | None:intergenic | 55.0% |
| GAAAACGCACGCAGACTTGC+CGG | - | chr3_2:15918073-15918092 | Msa0396980:intron | 55.0% | |
| GGGACGACAATGAGTCAGGA+TGG | + | chr3_2:15918863-15918882 | None:intergenic | 55.0% | |
| GCTGGAAATAGGAACAGCGG+CGG | + | chr3_2:15919278-15919297 | None:intergenic | 55.0% | |
| GAGAGCGAGCCATTTCTCAG+AGG | + | chr3_2:15919864-15919883 | None:intergenic | 55.0% | |
| TGCTCGACAGCTCAAGCGTT+TGG | - | chr3_2:15920349-15920368 | Msa0396980:intron | 55.0% | |
| GCTCGACAGCTCAAGCGTTT+GGG | - | chr3_2:15920350-15920369 | Msa0396980:intron | 55.0% | |
| CTCGACAGCTCAAGCGTTTG+GGG | - | chr3_2:15920351-15920370 | Msa0396980:intron | 55.0% | |
| ! | AAGGGAGGTCTCGAAGTGCT+TGG | + | chr3_2:15920571-15920590 | None:intergenic | 55.0% |
| GCCCCTAGTAATCCGGAGTT+CGG | - | chr3_2:15920785-15920804 | Msa0396980:intron | 55.0% | |
| GCCGAACTCCGGATTACTAG+GGG | + | chr3_2:15920789-15920808 | None:intergenic | 55.0% | |
| CAGCCGAACTCCGGATTACT+AGG | + | chr3_2:15920791-15920810 | None:intergenic | 55.0% | |
| CTAGTAATCCGGAGTTCGGC+TGG | - | chr3_2:15920789-15920808 | Msa0396980:intron | 55.0% | |
| GCACACTCCTAGATCCCAAG+TGG | + | chr3_2:15920966-15920985 | None:intergenic | 55.0% | |
| TCGAACATGAGACCTCGAGG+AGG | + | chr3_2:15920990-15921009 | None:intergenic | 55.0% | |
| AGTCAAGGTGAGGACTCTGG+TGG | - | chr3_2:15922488-15922507 | Msa0396980:intron | 55.0% | |
| AACAACTGCCCTTAGGGCAC+TGG | - | chr3_2:15922660-15922679 | Msa0396980:intron | 55.0% | |
| GACCAACATGACCCGGAAAC+AGG | - | chr3_2:15922846-15922865 | Msa0396980:intron | 55.0% | |
| CACCTGTTTCCGGGTCATGT+TGG | + | chr3_2:15922851-15922870 | None:intergenic | 55.0% | |
| AGAGGATCCCCCTCATGTCA+AGG | - | chr3_2:15922890-15922909 | Msa0396980:intron | 55.0% | |
| !! | GGAGACTGTGTTTGGTAGCG+AGG | - | chr3_2:15922962-15922981 | Msa0396980:intron | 55.0% |
| !! | GTGTTTGGTAGCGAGGAAGG+AGG | - | chr3_2:15922969-15922988 | Msa0396980:intron | 55.0% |
| CCACCTTCTTCGAACCGGAA+TGG | + | chr3_2:15923088-15923107 | None:intergenic | 55.0% | |
| ! | CCATTCCGGTTCGAAGAAGG+TGG | - | chr3_2:15923085-15923104 | Msa0396980:intron | 55.0% |
| AACACGTTGTGCGGGTCGTG+TGG | - | chr3_2:15917766-15917785 | Msa0396980:CDS | 60.0% | |
| AATAGGAACAGCGGCGGTGC+TGG | + | chr3_2:15919272-15919291 | None:intergenic | 60.0% | |
| TACAGCCGTCGGGACGACAT+CGG | + | chr3_2:15920483-15920502 | None:intergenic | 60.0% | |
| ACCCTCCCGTACATAGGGGA+AGG | - | chr3_2:15920761-15920780 | Msa0396980:intron | 60.0% | |
| CCCTTCCCCTATGTACGGGA+GGG | + | chr3_2:15920765-15920784 | None:intergenic | 60.0% | |
| CCCTCCCGTACATAGGGGAA+GGG | - | chr3_2:15920762-15920781 | Msa0396980:intron | 60.0% | |
| CCTCCCGTACATAGGGGAAG+GGG | - | chr3_2:15920763-15920782 | Msa0396980:intron | 60.0% | |
| GGAAGGGGCCCCTAGTAATC+CGG | - | chr3_2:15920778-15920797 | Msa0396980:intron | 60.0% | |
| TAATCCGGAGTTCGGCTGGC+AGG | - | chr3_2:15920793-15920812 | Msa0396980:intron | 60.0% | |
| CTTACCTGCCAGCCGAACTC+CGG | + | chr3_2:15920800-15920819 | None:intergenic | 60.0% | |
| ! | TAGGAGTGTGCTCCTCCTCG+AGG | - | chr3_2:15920975-15920994 | Msa0396980:intron | 60.0% |
| AACGCACGCAGACTTGCCGG+CGG | - | chr3_2:15918076-15918095 | Msa0396980:intron | 65.0% | |
| ACGACATCGGCCTTCCGAGG+TGG | + | chr3_2:15920470-15920489 | None:intergenic | 65.0% | |
| GAAGGCCGATGTCGTCCCGA+CGG | - | chr3_2:15920475-15920494 | Msa0396980:intron | 65.0% | |
| CCCCTTCCCCTATGTACGGG+AGG | + | chr3_2:15920766-15920785 | None:intergenic | 65.0% | |
| GGGCCCCTTCCCCTATGTAC+GGG | + | chr3_2:15920769-15920788 | None:intergenic | 65.0% | |
| GGGGCCCCTTCCCCTATGTA+CGG | + | chr3_2:15920770-15920789 | None:intergenic | 65.0% | |
| CGCAGACTTGCCGGCGGAGT+TGG | - | chr3_2:15918082-15918101 | Msa0396980:intron | 70.0% | |
| GGGACGACATCGGCCTTCCG+AGG | + | chr3_2:15920473-15920492 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15917376 | 15923445 | 15917376 | ID=Msa0396980;Name=Msa0396980 |
| chr3_2 | mRNA | 15917376 | 15923445 | 15917376 | ID=Msa0396980-mRNA-1;Parent=Msa0396980;Name=Msa0396980-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.87|0.88|0.88|1|1|9|147|417 |
| chr3_2 | exon | 15917376 | 15917977 | 15917376 | ID=Msa0396980-mRNA-1:exon:3591;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15918252 | 15918447 | 15918252 | ID=Msa0396980-mRNA-1:exon:3590;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15918586 | 15918675 | 15918586 | ID=Msa0396980-mRNA-1:exon:3589;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15918920 | 15919013 | 15918920 | ID=Msa0396980-mRNA-1:exon:3588;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15919651 | 15919679 | 15919651 | ID=Msa0396980-mRNA-1:exon:3587;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15920694 | 15920772 | 15920694 | ID=Msa0396980-mRNA-1:exon:3586;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15921163 | 15921275 | 15921163 | ID=Msa0396980-mRNA-1:exon:3585;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15921513 | 15921695 | 15921513 | ID=Msa0396980-mRNA-1:exon:3584;Parent=Msa0396980-mRNA-1 |
| chr3_2 | exon | 15923431 | 15923445 | 15923431 | ID=Msa0396980-mRNA-1:exon:3583;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15923431 | 15923445 | 15923431 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15921513 | 15921695 | 15921513 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15921163 | 15921275 | 15921163 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15920694 | 15920772 | 15920694 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15919651 | 15919679 | 15919651 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15918920 | 15919013 | 15918920 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15918586 | 15918675 | 15918586 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15918252 | 15918447 | 15918252 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | CDS | 15917523 | 15917977 | 15917523 | ID=Msa0396980-mRNA-1:cds;Parent=Msa0396980-mRNA-1 |
| chr3_2 | three_prime_UTR | 15917376 | 15917522 | 15917376 | ID=Msa0396980-mRNA-1:three_prime_utr;Parent=Msa0396980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
