Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492010 | AES68942.2 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492010 | G7IW53 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa0492010 | 0.802630 | 5.120560e-49 | -8.615850e-47 |
| Msa0396980 | Msa0492010 | 0.982752 | 6.587329e-156 | -8.615850e-47 |
| Msa0397010 | Msa0492010 | 0.994267 | 7.092586e-206 | -8.615850e-47 |
| Msa0288240 | Msa0492010 | 0.804043 | 2.610519e-49 | -8.615850e-47 |
| Msa0326670 | Msa0492010 | 0.809500 | 1.835413e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492010 | MtrunA17_Chr3g0084341 | 94.486 | 399 | 22 | 0 | 19 | 417 | 1 | 399 | 0.0 | 769 |
| Msa0492010 | MtrunA17_Chr4g0046731 | 86.397 | 272 | 37 | 0 | 19 | 290 | 1 | 272 | 2.94e-161 | 454 |
| Msa0492010 | MtrunA17_Chr1g0169631 | 96.429 | 28 | 1 | 0 | 39 | 66 | 3 | 30 | 1.21e-13 | 66.2 |
| Msa0492010 | MtrunA17_Chr1g0148071 | 89.286 | 28 | 3 | 0 | 39 | 66 | 31 | 58 | 3.45e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492010 | AT1G50910.1 | 56.800 | 250 | 104 | 3 | 21 | 268 | 4 | 251 | 2.61e-80 | 256 |
| Msa0492010 | AT1G50910.2 | 49.000 | 100 | 47 | 3 | 171 | 268 | 11 | 108 | 5.13e-19 | 88.2 |
Find 91 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCATTTCCCATTAAA+TGG | 0.136928 | 3_4:+15014540 | None:intergenic |
| GCATCTGCTTCACCTGTTTC+CGG | 0.170365 | 3_4:+15014881 | None:intergenic |
| GGCTAAGTCATTCCATTTAA+TGG | 0.180830 | 3_4:-15014552 | Msa0492010:CDS |
| ATTAGGTGAGGAGGGATTTA+AGG | 0.196911 | 3_4:-15018199 | Msa0492010:intron |
| GGGACTTTCTGTGACAATTA+TGG | 0.254227 | 3_4:-15015895 | Msa0492010:CDS |
| AAAAGATGAATCTTCTGTTT+TGG | 0.292424 | 3_4:+15018110 | None:intergenic |
| CTTCATAAGATGCTGGAAAT+AGG | 0.297223 | 3_4:+15018454 | None:intergenic |
| GCTAGCACGTCTACGAGTTT+TGG | 0.318715 | 3_4:-15015868 | Msa0492010:CDS |
| GCTAAGTCATTCCATTTAAT+GGG | 0.320185 | 3_4:-15014551 | Msa0492010:CDS |
| CATCTGCTTCACCTGTTTCC+GGG | 0.333787 | 3_4:+15014882 | None:intergenic |
| GCTTCTGCAGTTGGCAAACT+TGG | 0.355509 | 3_4:-15018177 | Msa0492010:CDS |
| ACTTGAGAGGAAGCATAAAA+AGG | 0.361049 | 3_4:-15015282 | Msa0492010:CDS |
| GACACTATCGAGTCTATTCT+TGG | 0.365745 | 3_4:-15015194 | Msa0492010:CDS |
| CACCCTCTGGTGAAGATTCA+TGG | 0.372177 | 3_4:+15014717 | None:intergenic |
| AGTGGAACCCATGCTCTTGC+AGG | 0.400157 | 3_4:-15020375 | None:intergenic |
| TCTTGTATACCAATCTTTCA+AGG | 0.403473 | 3_4:+15018501 | None:intergenic |
| AATCTTTCTGTTCAAGCATC+AGG | 0.410309 | 3_4:-15015227 | Msa0492010:CDS |
| AAAAGTCAATTCATTCTTCA+CGG | 0.421028 | 3_4:+15014325 | None:intergenic |
| GACCAACATGACCCGGAAAC+AGG | 0.424431 | 3_4:-15014893 | Msa0492010:CDS |
| ATCAAACAAAAGATGACAAA+GGG | 0.441607 | 3_4:-15014517 | Msa0492010:CDS |
| ACGTTACATTAGAGTGTGTC+TGG | 0.443288 | 3_4:-15015325 | Msa0492010:CDS |
| ACACTATCGAGTCTATTCTT+GGG | 0.448985 | 3_4:-15015193 | Msa0492010:CDS |
| TACTGAATTTGAAACAATTG+AGG | 0.464733 | 3_4:-15018570 | Msa0492010:CDS |
| ACCGGTAGGAAACTCCATTC+CGG | 0.467588 | 3_4:-15014668 | Msa0492010:CDS |
| CTATTTCCAGCATCTTATGA+AGG | 0.472658 | 3_4:-15018453 | Msa0492010:intron |
| AATAGGAACAGCGGCGGTGC+TGG | 0.473487 | 3_4:+15018471 | None:intergenic |
| GGATTTAAGGCTTCTGCAGT+TGG | 0.473619 | 3_4:-15018186 | Msa0492010:CDS |
| AATAACTCATGAGGGAATAG+AGG | 0.478056 | 3_4:-15015525 | Msa0492010:intron |
| AGCAGATGCTGCAGCTAAAG+AGG | 0.485173 | 3_4:-15014867 | Msa0492010:CDS |
| TACGTTGCAGCCTTCAGCAT+TGG | 0.487150 | 3_4:+15016588 | None:intergenic |
| TCTGCAGTTGGCAAACTTGG+AGG | 0.495185 | 3_4:-15018174 | Msa0492010:CDS |
| AAATGCCACCTTCTTCGAAC+CGG | 0.500567 | 3_4:+15014649 | None:intergenic |
| TAATCATCGTCATCACTAGC+AGG | 0.508322 | 3_4:+15015347 | None:intergenic |
| GAAAATGCAATGATGAAAAG+AGG | 0.510608 | 3_4:-15017680 | Msa0492010:CDS |
| GATAATTTATTAGGTGAGGA+GGG | 0.511623 | 3_4:-15018207 | Msa0492010:intron |
| CACCTGTTTCCGGGTCATGT+TGG | 0.511939 | 3_4:+15014891 | None:intergenic |
| GCATTATCACAGTCTTCAAC+CGG | 0.513144 | 3_4:-15014686 | Msa0492010:CDS |
| TGTTTCATGACAGCTTGAAA+AGG | 0.514585 | 3_4:-15017704 | Msa0492010:intron |
| TTTAGATTGCAAGGATTCGA+TGG | 0.520597 | 3_4:-15018594 | Msa0492010:CDS |
| ACTGAATTTGAAACAATTGA+GGG | 0.522339 | 3_4:-15018569 | Msa0492010:CDS |
| CATTGTTGATTTGTTCAACA+TGG | 0.528069 | 3_4:-15015582 | Msa0492010:CDS |
| ACTCCATTCCGGTTCGAAGA+AGG | 0.530166 | 3_4:-15014657 | Msa0492010:CDS |
| TACATACCTTCATAAGATGC+TGG | 0.531921 | 3_4:+15018447 | None:intergenic |
| TAAAATCATCGATTTGCGAC+GGG | 0.534590 | 3_4:+15014801 | None:intergenic |
| CCACCTTCTTCGAACCGGAA+TGG | 0.537805 | 3_4:+15014654 | None:intergenic |
| GCAGATAATAGCTCGGCTGT+TGG | 0.539928 | 3_4:-15018618 | Msa0492010:intron |
| CACTATCGAGTCTATTCTTG+GGG | 0.541164 | 3_4:-15015192 | Msa0492010:CDS |
| TGATAATTTATTAGGTGAGG+AGG | 0.543150 | 3_4:-15018208 | Msa0492010:intron |
| GCTGTTGGATTTAGATTGCA+AGG | 0.544705 | 3_4:-15018603 | Msa0492010:CDS |
| TCATACCTCCTGCAAGAGCA+TGG | 0.544829 | 3_4:+15020367 | None:intergenic |
| CAAGGATGCCACACTCACAT+TGG | 0.547673 | 3_4:+15018519 | None:intergenic |
| ACTGTGTTTGGTAGCGAGGA+AGG | 0.549590 | 3_4:-15014773 | Msa0492010:CDS |
| GTGTGGCATCCTTGAAAGAT+TGG | 0.553976 | 3_4:-15018510 | Msa0492010:CDS |
| GAAAGTCAAGGTGAGGACTC+TGG | 0.554428 | 3_4:-15015254 | Msa0492010:CDS |
| TTTGGTGGTACTGGTACAGT+AGG | 0.557194 | 3_4:-15014383 | Msa0492010:three_prime_UTR |
| TATTTGTATCCTTGACATGA+GGG | 0.557999 | 3_4:+15014840 | None:intergenic |
| TTAGATTGCAAGGATTCGAT+GGG | 0.566475 | 3_4:-15018593 | Msa0492010:CDS |
| TTTGTTTGCAGATAATAGCT+CGG | 0.568626 | 3_4:-15018625 | Msa0492010:intron |
| GGAGACTGTGTTTGGTAGCG+AGG | 0.571251 | 3_4:-15014777 | Msa0492010:CDS |
| CTCCATGAATCTTCACCAGA+GGG | 0.573969 | 3_4:-15014719 | Msa0492010:CDS |
| ACCGGAATGGAGTTTCCTAC+CGG | 0.578498 | 3_4:+15014667 | None:intergenic |
| TGTGTTAACTAGCAATGCTA+AGG | 0.578852 | 3_4:-15014573 | Msa0492010:CDS |
| AATGCATGCAAGTCACCCTC+TGG | 0.581592 | 3_4:+15014704 | None:intergenic |
| TGCAGATGACCAACATGACC+CGG | 0.583493 | 3_4:-15014900 | Msa0492010:intron |
| GTATTTGTATCCTTGACATG+AGG | 0.592724 | 3_4:+15014839 | None:intergenic |
| GATCAAACAAAAGATGACAA+AGG | 0.597416 | 3_4:-15014518 | Msa0492010:CDS |
| CATACCTCCTGCAAGAGCAT+GGG | 0.598263 | 3_4:+15020368 | None:intergenic |
| TTTGTATCCTTGACATGAGG+GGG | 0.599355 | 3_4:+15014842 | None:intergenic |
| ATAAGTATATATTACTTGAG+AGG | 0.601355 | 3_4:-15015295 | Msa0492010:CDS |
| ACTTACTAATGTAAATCCAA+AGG | 0.608539 | 3_4:-15014477 | Msa0492010:CDS |
| TCACAGCTCCAATGTGAGTG+TGG | 0.609139 | 3_4:-15018527 | Msa0492010:CDS |
| TGGTGAAGATTCATGGAGAG+AGG | 0.611678 | 3_4:+15014724 | None:intergenic |
| CCATTCCGGTTCGAAGAAGG+TGG | 0.616651 | 3_4:-15014654 | Msa0492010:CDS |
| ATAAAATCATCGATTTGCGA+CGG | 0.620309 | 3_4:+15014800 | None:intergenic |
| GGAGAATGAAAGTCAAGGTG+AGG | 0.625016 | 3_4:-15015261 | Msa0492010:CDS |
| ATTTGTATCCTTGACATGAG+GGG | 0.627428 | 3_4:+15014841 | None:intergenic |
| ATCTGCACGACTACTAGAAG+AGG | 0.629442 | 3_4:-15017634 | Msa0492010:intron |
| GGAACCCATGCTCTTGCAGG+AGG | 0.635806 | 3_4:-15020372 | None:intergenic |
| TCTCCATGAATCTTCACCAG+AGG | 0.640554 | 3_4:-15014720 | Msa0492010:CDS |
| GTACTACTTTGTACACATTG+TGG | 0.656666 | 3_4:+15014599 | None:intergenic |
| AATCATCGTCATCACTAGCA+GGG | 0.659881 | 3_4:+15015348 | None:intergenic |
| GATGGTTGAACCAATGCTGA+AGG | 0.663541 | 3_4:-15016598 | Msa0492010:CDS |
| GTGTTTGGTAGCGAGGAAGG+AGG | 0.667909 | 3_4:-15014770 | Msa0492010:CDS |
| GTCGTGCAGATCCTAAAAGA+CGG | 0.669319 | 3_4:+15017646 | None:intergenic |
| TATCACAGTCTTCAACCGGT+AGG | 0.674568 | 3_4:-15014682 | Msa0492010:CDS |
| GATGCTGGAAATAGGAACAG+CGG | 0.692299 | 3_4:+15018462 | None:intergenic |
| AGTCAAGGTGAGGACTCTGG+TGG | 0.692733 | 3_4:-15015251 | Msa0492010:CDS |
| ACACATTGTGGCACTAACGT+AGG | 0.699937 | 3_4:+15014611 | None:intergenic |
| GCTGGAAATAGGAACAGCGG+CGG | 0.714092 | 3_4:+15018465 | None:intergenic |
| TCAAACAAAAGATGACAAAG+GGG | 0.719091 | 3_4:-15014516 | Msa0492010:CDS |
| ACTATCGAGTCTATTCTTGG+GGG | 0.749201 | 3_4:-15015191 | Msa0492010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATGTTAAATAACTT+TGG | - | chr3_4:15014438-15014457 | Msa0492010:three_prime_UTR | 10.0% |
| !! | GAAAATCAAAATTAAAATAA+TGG | + | chr3_4:15015068-15015087 | None:intergenic | 10.0% |
| !! | AATTATAATACATAAAACAT+GGG | + | chr3_4:15018855-15018874 | None:intergenic | 10.0% |
| !! | TAATTATAATACATAAAACA+TGG | + | chr3_4:15018856-15018875 | None:intergenic | 10.0% |
| !!! | GAAAATTTTAGATATTTGTA+AGG | + | chr3_4:15014465-15014484 | None:intergenic | 15.0% |
| !!! | AATGTTTTTTAAACAAGTTT+TGG | - | chr3_4:15014498-15014517 | Msa0492010:CDS | 15.0% |
| !! | TAAAATTTATTTAAGCAATG+AGG | - | chr3_4:15014672-15014691 | Msa0492010:CDS | 15.0% |
| !!! | TAATTCATTTGAAATATGAA+TGG | + | chr3_4:15014763-15014782 | None:intergenic | 15.0% |
| !!! | GTTAAAAAAAATCTGAATTT+TGG | + | chr3_4:15014824-15014843 | None:intergenic | 15.0% |
| !! | AAATTAAACTTGTAAAACTT+TGG | + | chr3_4:15015904-15015923 | None:intergenic | 15.0% |
| !! | TACTTCATAATTCATAATAT+AGG | - | chr3_4:15018239-15018258 | Msa0492010:intron | 15.0% |
| !!! | AATTAAATTTAACTTTGTCA+AGG | - | chr3_4:15018871-15018890 | Msa0492010:intron | 15.0% |
| !! | AGTAGAAATTTATTCTTAAT+TGG | - | chr3_4:15019638-15019657 | Msa0492010:intron | 15.0% |
| !! | CTTGTTTAAAAAACATTAGA+GGG | + | chr3_4:15014495-15014514 | None:intergenic | 20.0% |
| !! | ACTTGTTTAAAAAACATTAG+AGG | + | chr3_4:15014496-15014515 | None:intergenic | 20.0% |
| !!! | ATTAAAATAATGGAATAACC+TGG | + | chr3_4:15015058-15015077 | None:intergenic | 20.0% |
| !! | AGCTACAAATTTAATATGTT+AGG | - | chr3_4:15015332-15015351 | Msa0492010:CDS | 20.0% |
| !!! | ATTCGTTTTCTTTTTTACTA+GGG | + | chr3_4:15015823-15015842 | None:intergenic | 20.0% |
| !! | TTAAATATCCCTTATGTTTA+CGG | - | chr3_4:15015876-15015895 | Msa0492010:CDS | 20.0% |
| !! | TAATTATATTCAGCAACATT+TGG | + | chr3_4:15015939-15015958 | None:intergenic | 20.0% |
| !! | TGAATATAATTACTTGTGTA+TGG | - | chr3_4:15015947-15015966 | Msa0492010:intron | 20.0% |
| !!! | TATTATGAACTTTTGAAATG+CGG | + | chr3_4:15015973-15015992 | None:intergenic | 20.0% |
| !! | CATTTCAAAAGTTCATAATA+TGG | - | chr3_4:15015973-15015992 | Msa0492010:intron | 20.0% |
| !!! | ATGTGGTTTGATAATTTATT+AGG | - | chr3_4:15016465-15016484 | Msa0492010:intron | 20.0% |
| !!! | GTTATTTCTTTCAGTTTTTT+TGG | - | chr3_4:15016610-15016629 | Msa0492010:intron | 20.0% |
| !!! | AGTTTTTCTAATTATATGTG+TGG | - | chr3_4:15016633-15016652 | Msa0492010:intron | 20.0% |
| !! | TCAAAATGTGATGTTATTAT+AGG | - | chr3_4:15016917-15016936 | Msa0492010:intron | 20.0% |
| !! | TGATTGAAATAAGAAAAAAG+AGG | + | chr3_4:15018043-15018062 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATCGTATTTACA+GGG | + | chr3_4:15018326-15018345 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAATCGTATTTAC+AGG | + | chr3_4:15018327-15018346 | None:intergenic | 20.0% |
| !! | ATACGATTTCAAAAAACTTT+CGG | - | chr3_4:15018331-15018350 | Msa0492010:intron | 20.0% |
| !!! | CATATTTTTTCTGTATACTT+TGG | - | chr3_4:15018628-15018647 | Msa0492010:intron | 20.0% |
| !! | ATCAATAAAAATAACTCATG+AGG | - | chr3_4:15019147-15019166 | Msa0492010:intron | 20.0% |
| !! | TCAATAAAAATAACTCATGA+GGG | - | chr3_4:15019148-15019167 | Msa0492010:intron | 20.0% |
| !! | ATAAGTATATATTACTTGAG+AGG | - | chr3_4:15019386-15019405 | Msa0492010:intron | 20.0% |
| !!! | CAATTTTGTAATGAATCTTT+TGG | - | chr3_4:15020280-15020299 | Msa0492010:intron | 20.0% |
| !! | TTAAATTTTGCAAGAGAGAT+GGG | - | chr3_4:15014894-15014913 | Msa0492010:CDS | 25.0% |
| ! | TAATCACTTGTGATATTGTT+TGG | + | chr3_4:15015261-15015280 | None:intergenic | 25.0% |
| ! | AAGGTAAAGTTATGTTTGTT+TGG | - | chr3_4:15015527-15015546 | Msa0492010:CDS | 25.0% |
| ! | CAAAATCAATTATACTTCAG+AGG | - | chr3_4:15015652-15015671 | Msa0492010:intron | 25.0% |
| !!! | CATTCGTTTTCTTTTTTACT+AGG | + | chr3_4:15015824-15015843 | None:intergenic | 25.0% |
| !! | TACTGAATTTGAAACAATTG+AGG | - | chr3_4:15016111-15016130 | Msa0492010:intron | 25.0% |
| !! | ACTGAATTTGAAACAATTGA+GGG | - | chr3_4:15016112-15016131 | Msa0492010:intron | 25.0% |
| ! | ACAGTCAGATAAATAACTAA+GGG | + | chr3_4:15016354-15016373 | None:intergenic | 25.0% |
| ! | TACAGTCAGATAAATAACTA+AGG | + | chr3_4:15016355-15016374 | None:intergenic | 25.0% |
| ! | ATTTGTGTAGAAATTCGAAA+GGG | - | chr3_4:15016380-15016399 | Msa0492010:intron | 25.0% |
| !! | GTTTGATAATTTATTAGGTG+AGG | - | chr3_4:15016470-15016489 | Msa0492010:intron | 25.0% |
| !! | AAAAGATGAATCTTCTGTTT+TGG | + | chr3_4:15016574-15016593 | None:intergenic | 25.0% |
| !! | TTTTCTAATTATATGTGTGG+AGG | - | chr3_4:15016636-15016655 | Msa0492010:intron | 25.0% |
| ! | ATATTAAACGAAGATAACTG+AGG | - | chr3_4:15016669-15016688 | Msa0492010:intron | 25.0% |
| ! | TTTGTGGTTAAAGAAAAAGT+AGG | - | chr3_4:15016737-15016756 | Msa0492010:intron | 25.0% |
| !!! | TGATGAAAAGAGGAATTTTT+TGG | - | chr3_4:15017011-15017030 | Msa0492010:intron | 25.0% |
| !!! | TCGCAATCTTAGATTTTTTT+TGG | - | chr3_4:15017674-15017693 | Msa0492010:CDS | 25.0% |
| ! | GATTATGTAAACAAGTGATT+GGG | + | chr3_4:15017854-15017873 | None:intergenic | 25.0% |
| ! | TGATTATGTAAACAAGTGAT+TGG | + | chr3_4:15017855-15017874 | None:intergenic | 25.0% |
| ! | ATCATAGATTTAACCATAAG+AGG | - | chr3_4:15017871-15017890 | Msa0492010:intron | 25.0% |
| ! | TTCATTTATACTAATTGCTC+TGG | - | chr3_4:15018157-15018176 | Msa0492010:CDS | 25.0% |
| ! | TCATTTATACTAATTGCTCT+GGG | - | chr3_4:15018158-15018177 | Msa0492010:CDS | 25.0% |
| ! | TGAATTATGAAGTAAAAGAG+AGG | + | chr3_4:15018233-15018252 | None:intergenic | 25.0% |
| ! | TAATTCATAATATAGGTACC+AGG | - | chr3_4:15018246-15018265 | Msa0492010:intron | 25.0% |
| !!! | TTTTGAAATCGTATTTACAG+GGG | + | chr3_4:15018325-15018344 | None:intergenic | 25.0% |
| ! | TTACAGATCTTTGTTGAAAT+AGG | - | chr3_4:15018469-15018488 | Msa0492010:CDS | 25.0% |
| ! | TACAGATCTTTGTTGAAATA+GGG | - | chr3_4:15018470-15018489 | Msa0492010:CDS | 25.0% |
| !!! | ATTTTTTACCAGAAAAACTG+AGG | + | chr3_4:15018526-15018545 | None:intergenic | 25.0% |
| !!! | TGAAGCATTTTACCAAAATT+TGG | - | chr3_4:15018567-15018586 | Msa0492010:CDS | 25.0% |
| ! | TACAGAAAAAATATGACTCA+AGG | + | chr3_4:15018623-15018642 | None:intergenic | 25.0% |
| ! | ATCTCACTATTAAATAGTCA+AGG | + | chr3_4:15018736-15018755 | None:intergenic | 25.0% |
| ! | AGGTTTCATCATAGTTAAAT+TGG | - | chr3_4:15018891-15018910 | Msa0492010:intron | 25.0% |
| ! | AAATTGGAAGTTGTTTAATG+TGG | - | chr3_4:15018907-15018926 | Msa0492010:intron | 25.0% |
| ! | GAAGTACAAGTGATATTATT+TGG | - | chr3_4:15018965-15018984 | Msa0492010:intron | 25.0% |
| ! | AAGTAATATCTGCATAAGAA+TGG | + | chr3_4:15019077-15019096 | None:intergenic | 25.0% |
| ! | TGATAAATGTTTCGTTAACA+TGG | - | chr3_4:15019695-15019714 | Msa0492010:intron | 25.0% |
| ! | ATCAAACAAAAGATGACAAA+GGG | - | chr3_4:15020164-15020183 | Msa0492010:intron | 25.0% |
| ! | ACTTACTAATGTAAATCCAA+AGG | - | chr3_4:15020204-15020223 | Msa0492010:intron | 25.0% |
| !! | TTTTGTAATGAATCTTTTGG+TGG | - | chr3_4:15020283-15020302 | Msa0492010:intron | 25.0% |
| ! | AAAAGTCAATTCATTCTTCA+CGG | + | chr3_4:15020359-15020378 | None:intergenic | 25.0% |
| ACGTATAATATGTTGTCGAA+TGG | + | chr3_4:15014618-15014637 | None:intergenic | 30.0% | |
| ! | GTTAAATTTTGCAAGAGAGA+TGG | - | chr3_4:15014893-15014912 | Msa0492010:CDS | 30.0% |
| !!! | TATACTAGTGTTTTGGAGAA+GGG | + | chr3_4:15014962-15014981 | None:intergenic | 30.0% |
| !!! | ATATACTAGTGTTTTGGAGA+AGG | + | chr3_4:15014963-15014982 | None:intergenic | 30.0% |
| ! | ACAAGGATATACTAGTGTTT+TGG | + | chr3_4:15014969-15014988 | None:intergenic | 30.0% |
| ! | AATAATGGAATAACCTGGAA+TGG | + | chr3_4:15015053-15015072 | None:intergenic | 30.0% |
| AAAGTCTCAGCAATAAAATG+TGG | + | chr3_4:15015384-15015403 | None:intergenic | 30.0% | |
| AACATGAGTAAGTGTATGTT+TGG | - | chr3_4:15015447-15015466 | Msa0492010:intron | 30.0% | |
| TAAGTGTATGTTTGGTTATG+CGG | - | chr3_4:15015455-15015474 | Msa0492010:intron | 30.0% | |
| !! | TCTAGCTAAAATTGAGTTGA+AGG | - | chr3_4:15015508-15015527 | Msa0492010:intron | 30.0% |
| TCAAGTATAATCCATTCTAG+AGG | - | chr3_4:15015629-15015648 | Msa0492010:intron | 30.0% | |
| !! | AATTGATTTTGCCTCTAGAA+TGG | + | chr3_4:15015643-15015662 | None:intergenic | 30.0% |
| !!! | TAGACCTCTAGAATCATTTT+TGG | - | chr3_4:15015699-15015718 | Msa0492010:intron | 30.0% |
| ATGTCAAATCGAGAAAACAT+AGG | - | chr3_4:15015841-15015860 | Msa0492010:intron | 30.0% | |
| TTTGTTTGCAGATAATAGCT+CGG | - | chr3_4:15016056-15016075 | Msa0492010:intron | 30.0% | |
| TCTTGTATACCAATCTTTCA+AGG | + | chr3_4:15016183-15016202 | None:intergenic | 30.0% | |
| GATTTGTGTAGAAATTCGAA+AGG | - | chr3_4:15016379-15016398 | Msa0492010:intron | 30.0% | |
| TGTATTTACGAGTCATTATG+TGG | - | chr3_4:15016448-15016467 | Msa0492010:intron | 30.0% | |
| TGATAATTTATTAGGTGAGG+AGG | - | chr3_4:15016473-15016492 | Msa0492010:intron | 30.0% | |
| GATAATTTATTAGGTGAGGA+GGG | - | chr3_4:15016474-15016493 | Msa0492010:intron | 30.0% | |
| !! | AGAAGATTCATCTTTTAGAG+AGG | - | chr3_4:15016578-15016597 | Msa0492010:intron | 30.0% |
| GAAAGCAATAACCAAATGAA+GGG | + | chr3_4:15016867-15016886 | None:intergenic | 30.0% | |
| AGAAAGCAATAACCAAATGA+AGG | + | chr3_4:15016868-15016887 | None:intergenic | 30.0% | |
| ATGTGATGTTATTATAGGCA+TGG | - | chr3_4:15016922-15016941 | Msa0492010:intron | 30.0% | |
| GAAAATGCAATGATGAAAAG+AGG | - | chr3_4:15017001-15017020 | Msa0492010:intron | 30.0% | |
| !!! | AATTTTTTGGACCGTCTTTT+AGG | - | chr3_4:15017024-15017043 | Msa0492010:intron | 30.0% |
| ACACATTAACTAATGCTGAT+AGG | - | chr3_4:15017219-15017238 | Msa0492010:intron | 30.0% | |
| CACATTAACTAATGCTGATA+GGG | - | chr3_4:15017220-15017239 | Msa0492010:intron | 30.0% | |
| CTATCAGAAAGGACTAAAAA+AGG | + | chr3_4:15017485-15017504 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAGTCCTTTCTGAT+AGG | - | chr3_4:15017483-15017502 | Msa0492010:intron | 30.0% |
| ATCCCAATTTGCATTTGATA+GGG | + | chr3_4:15017636-15017655 | None:intergenic | 30.0% | |
| AATCCCAATTTGCATTTGAT+AGG | + | chr3_4:15017637-15017656 | None:intergenic | 30.0% | |
| ATTCTCTCCAGTGTTAATTT+GGG | - | chr3_4:15017950-15017969 | Msa0492010:intron | 30.0% | |
| ATTATACCGCAATCAAGATA+TGG | + | chr3_4:15018197-15018216 | None:intergenic | 30.0% | |
| CTAAACTCGTAAGTATCATT+TGG | + | chr3_4:15018280-15018299 | None:intergenic | 30.0% | |
| !! | GCACATAGAAAATTTTAGCA+CGG | + | chr3_4:15018395-15018414 | None:intergenic | 30.0% |
| ! | GCATTTTACCAAAATTTGGT+TGG | - | chr3_4:15018571-15018590 | Msa0492010:CDS | 30.0% |
| ! | TCATAGAACCAACCAAATTT+TGG | + | chr3_4:15018582-15018601 | None:intergenic | 30.0% |
| !!! | TTTGCTCGATCCTTTTTTAT+GGG | - | chr3_4:15018766-15018785 | Msa0492010:intron | 30.0% |
| AGAATGGAAAAACGATCAAT+CGG | + | chr3_4:15019061-15019080 | None:intergenic | 30.0% | |
| !! | CATTGTTGATTTGTTCAACA+TGG | - | chr3_4:15019099-15019118 | Msa0492010:intron | 30.0% |
| ! | TGATTGCTTCTTTTTAGACA+GGG | + | chr3_4:15019131-15019150 | None:intergenic | 30.0% |
| ! | TTGATTGCTTCTTTTTAGAC+AGG | + | chr3_4:15019132-15019151 | None:intergenic | 30.0% |
| GTATACAACAGAGAATTTAG+TGG | + | chr3_4:15019198-15019217 | None:intergenic | 30.0% | |
| AAAAAGGAGAATGAAAGTCA+AGG | - | chr3_4:15019415-15019434 | Msa0492010:intron | 30.0% | |
| TATTTGTATCCTTGACATGA+GGG | + | chr3_4:15019844-15019863 | None:intergenic | 30.0% | |
| !! | ATAAAATCATCGATTTGCGA+CGG | + | chr3_4:15019884-15019903 | None:intergenic | 30.0% |
| GCTAAGTCATTCCATTTAAT+GGG | - | chr3_4:15020130-15020149 | Msa0492010:intron | 30.0% | |
| CACTTTCATTTCCCATTAAA+TGG | + | chr3_4:15020144-15020163 | None:intergenic | 30.0% | |
| GATCAAACAAAAGATGACAA+AGG | - | chr3_4:15020163-15020182 | Msa0492010:intron | 30.0% | |
| TCAAACAAAAGATGACAAAG+GGG | - | chr3_4:15020165-15020184 | Msa0492010:intron | 30.0% | |
| GCTTAAAAAAGACTATCCTT+TGG | + | chr3_4:15020223-15020242 | None:intergenic | 30.0% | |
| CTAAGATCACAACAACATCT+TGG | - | chr3_4:15014586-15014605 | Msa0492010:CDS | 35.0% | |
| !!! | TTTTTGGTTTCTGCAACACA+AGG | + | chr3_4:15014986-15015005 | None:intergenic | 35.0% |
| ! | TCTCAAAGTTTCGTTGATTG+CGG | - | chr3_4:15015403-15015422 | Msa0492010:intron | 35.0% |
| !! | TTTACGTTTGGTTCCACTTT+TGG | + | chr3_4:15015730-15015749 | None:intergenic | 35.0% |
| TTTAGATTGCAAGGATTCGA+TGG | - | chr3_4:15016087-15016106 | Msa0492010:intron | 35.0% | |
| TTAGATTGCAAGGATTCGAT+GGG | - | chr3_4:15016088-15016107 | Msa0492010:intron | 35.0% | |
| CTTCATAAGATGCTGGAAAT+AGG | + | chr3_4:15016230-15016249 | None:intergenic | 35.0% | |
| CTATTTCCAGCATCTTATGA+AGG | - | chr3_4:15016228-15016247 | Msa0492010:intron | 35.0% | |
| TACATACCTTCATAAGATGC+TGG | + | chr3_4:15016237-15016256 | None:intergenic | 35.0% | |
| ACAATGATGTGAGATTGCTT+AGG | - | chr3_4:15016292-15016311 | Msa0492010:intron | 35.0% | |
| GTTATTTATCTGACTGTAGC+TGG | - | chr3_4:15016357-15016376 | Msa0492010:intron | 35.0% | |
| !! | GATTCATCTTTTAGAGAGGT+AGG | - | chr3_4:15016582-15016601 | Msa0492010:intron | 35.0% |
| TTAAACGAAGATAACTGAGG+AGG | - | chr3_4:15016672-15016691 | Msa0492010:intron | 35.0% | |
| ! | AATTACAGTCCTCTGAGAAA+TGG | - | chr3_4:15016793-15016812 | Msa0492010:intron | 35.0% |
| ! | TTTCTAACTTGCCCTTCATT+TGG | - | chr3_4:15016853-15016872 | Msa0492010:intron | 35.0% |
| TGTTTCATGACAGCTTGAAA+AGG | - | chr3_4:15016977-15016996 | Msa0492010:intron | 35.0% | |
| AGAAAGGACTAAAAAAGGAG+GGG | + | chr3_4:15017480-15017499 | None:intergenic | 35.0% | |
| CAGAAAGGACTAAAAAAGGA+GGG | + | chr3_4:15017481-15017500 | None:intergenic | 35.0% | |
| TCAGAAAGGACTAAAAAAGG+AGG | + | chr3_4:15017482-15017501 | None:intergenic | 35.0% | |
| ATTTGCATTTGATAGGGACT+CGG | + | chr3_4:15017630-15017649 | None:intergenic | 35.0% | |
| AGTCCCTATCAAATGCAAAT+TGG | - | chr3_4:15017630-15017649 | Msa0492010:intron | 35.0% | |
| GTCCCTATCAAATGCAAATT+GGG | - | chr3_4:15017631-15017650 | Msa0492010:intron | 35.0% | |
| CTAAGATTGCGATTTATGCA+GGG | + | chr3_4:15017666-15017685 | None:intergenic | 35.0% | |
| ! | TCTAAGATTGCGATTTATGC+AGG | + | chr3_4:15017667-15017686 | None:intergenic | 35.0% |
| GATTCTCTCCAGTGTTAATT+TGG | - | chr3_4:15017949-15017968 | Msa0492010:intron | 35.0% | |
| ATCCTTCTACTAGTATCATG+TGG | - | chr3_4:15018115-15018134 | Msa0492010:CDS | 35.0% | |
| AACCACATGATACTAGTAGA+AGG | + | chr3_4:15018120-15018139 | None:intergenic | 35.0% | |
| TATCATTTGGTAAGATCACC+TGG | + | chr3_4:15018267-15018286 | None:intergenic | 35.0% | |
| ACTTATAACAGAGATGCAGA+AGG | + | chr3_4:15018450-15018469 | None:intergenic | 35.0% | |
| ! | AGGAACTTCAGTTTTCATAC+TGG | - | chr3_4:15018496-15018515 | Msa0492010:CDS | 35.0% |
| TTCAGAATCTCACAACTTTG+AGG | + | chr3_4:15018551-15018570 | None:intergenic | 35.0% | |
| TTGGTTAGAAATTGTTACCG+TGG | - | chr3_4:15018647-15018666 | Msa0492010:intron | 35.0% | |
| AAGCATGCACTAAATGATAC+TGG | + | chr3_4:15018679-15018698 | None:intergenic | 35.0% | |
| !!! | GTTTGCTCGATCCTTTTTTA+TGG | - | chr3_4:15018765-15018784 | Msa0492010:intron | 35.0% |
| CACAGAAAGTCCCATAAAAA+AGG | + | chr3_4:15018779-15018798 | None:intergenic | 35.0% | |
| GAATGGAAAAACGATCAATC+GGG | + | chr3_4:15019060-15019079 | None:intergenic | 35.0% | |
| AATAACTCATGAGGGAATAG+AGG | - | chr3_4:15019156-15019175 | Msa0492010:intron | 35.0% | |
| ! | ACTTGAGAGGAAGCATAAAA+AGG | - | chr3_4:15019399-15019418 | Msa0492010:intron | 35.0% |
| AATCTTTCTGTTCAAGCATC+AGG | - | chr3_4:15019454-15019473 | Msa0492010:intron | 35.0% | |
| ACACTATCGAGTCTATTCTT+GGG | - | chr3_4:15019488-15019507 | Msa0492010:intron | 35.0% | |
| TAACAGAAATGAGCACATCA+TGG | + | chr3_4:15019522-15019541 | None:intergenic | 35.0% | |
| TAATTGGTGCATTGTTCAGT+TGG | - | chr3_4:15019654-15019673 | Msa0492010:intron | 35.0% | |
| ! | GAGAGTTGTCTTGTTAAACA+TGG | - | chr3_4:15019744-15019763 | Msa0492010:intron | 35.0% |
| ATTTGTATCCTTGACATGAG+GGG | + | chr3_4:15019843-15019862 | None:intergenic | 35.0% | |
| GTATTTGTATCCTTGACATG+AGG | + | chr3_4:15019845-15019864 | None:intergenic | 35.0% | |
| !! | TAAAATCATCGATTTGCGAC+GGG | + | chr3_4:15019883-15019902 | None:intergenic | 35.0% |
| ! | GTCGCAAATCGATGATTTTA+TGG | - | chr3_4:15019883-15019902 | Msa0492010:intron | 35.0% |
| ! | GATTTTATGGAGACTGTGTT+TGG | - | chr3_4:15019896-15019915 | Msa0492010:intron | 35.0% |
| GTACTACTTTGTACACATTG+TGG | + | chr3_4:15020085-15020104 | None:intergenic | 35.0% | |
| TGTGTTAACTAGCAATGCTA+AGG | - | chr3_4:15020108-15020127 | Msa0492010:intron | 35.0% | |
| GGCTAAGTCATTCCATTTAA+TGG | - | chr3_4:15020129-15020148 | Msa0492010:intron | 35.0% | |
| !! | AATGAATCTTTTGGTGGTAC+TGG | - | chr3_4:15020289-15020308 | Msa0492010:intron | 35.0% |
| AGATCACAACAACATCTTGG+TGG | - | chr3_4:15014589-15014608 | Msa0492010:CDS | 40.0% | |
| TGCAGAAACCAAAAACTGTC+CGG | - | chr3_4:15014991-15015010 | Msa0492010:intron | 40.0% | |
| ATACTTCAGAGGAACCAAAC+AGG | - | chr3_4:15015663-15015682 | Msa0492010:intron | 40.0% | |
| TACTTCAGAGGAACCAAACA+GGG | - | chr3_4:15015664-15015683 | Msa0492010:intron | 40.0% | |
| GGAGCCAAAAATGATTCTAG+AGG | + | chr3_4:15015706-15015725 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGCTCCTCCAAAAG+TGG | - | chr3_4:15015714-15015733 | Msa0492010:intron | 40.0% |
| AGTGGAACCAAACGTAAACA+TGG | - | chr3_4:15015732-15015751 | Msa0492010:intron | 40.0% | |
| GTGGAACCAAACGTAAACAT+GGG | - | chr3_4:15015733-15015752 | Msa0492010:intron | 40.0% | |
| ACCAAACGTAAACATGGGAA+AGG | - | chr3_4:15015738-15015757 | Msa0492010:intron | 40.0% | |
| ACCTTTCCCATGTTTACGTT+TGG | + | chr3_4:15015742-15015761 | None:intergenic | 40.0% | |
| !! | CATGGGAAAGGTATTTGATG+AGG | - | chr3_4:15015750-15015769 | Msa0492010:intron | 40.0% |
| !! | AAAGGTATTTGATGAGGCGA+GGG | - | chr3_4:15015756-15015775 | Msa0492010:intron | 40.0% |
| CTTTGGCACCGTAAACATAA+GGG | + | chr3_4:15015887-15015906 | None:intergenic | 40.0% | |
| ACTTTGGCACCGTAAACATA+AGG | + | chr3_4:15015888-15015907 | None:intergenic | 40.0% | |
| GCTGTTGGATTTAGATTGCA+AGG | - | chr3_4:15016078-15016097 | Msa0492010:intron | 40.0% | |
| ATTAGGTGAGGAGGGATTTA+AGG | - | chr3_4:15016482-15016501 | Msa0492010:intron | 40.0% | |
| CTGAGTGTCTTACATGTTTG+TGG | - | chr3_4:15016721-15016740 | Msa0492010:intron | 40.0% | |
| ATGCATAGAGCATGACTATG+AGG | - | chr3_4:15017191-15017210 | Msa0492010:intron | 40.0% | |
| AACTAATGCTGATAGGGACT+TGG | - | chr3_4:15017226-15017245 | Msa0492010:intron | 40.0% | |
| ACTAATGCTGATAGGGACTT+GGG | - | chr3_4:15017227-15017246 | Msa0492010:intron | 40.0% | |
| TGATAGGGACTTGGGTATTA+TGG | - | chr3_4:15017235-15017254 | Msa0492010:intron | 40.0% | |
| GATAGGGACTTGGGTATTAT+GGG | - | chr3_4:15017236-15017255 | Msa0492010:intron | 40.0% | |
| ATAGGGACTTGGGTATTATG+GGG | - | chr3_4:15017237-15017256 | Msa0492010:intron | 40.0% | |
| AGTCCCACATTGAGTATTAG+AGG | - | chr3_4:15017266-15017285 | Msa0492010:intron | 40.0% | |
| GTCCCACATTGAGTATTAGA+GGG | - | chr3_4:15017267-15017286 | Msa0492010:intron | 40.0% | |
| CACCCTCTAATACTCAATGT+GGG | + | chr3_4:15017272-15017291 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGAATTATG+GGG | + | chr3_4:15017381-15017400 | None:intergenic | 40.0% | |
| GATAGGGACTTGGGAATTAT+GGG | + | chr3_4:15017382-15017401 | None:intergenic | 40.0% | |
| TGATAGGGACTTGGGAATTA+TGG | + | chr3_4:15017383-15017402 | None:intergenic | 40.0% | |
| AATTGTTAAGTACAGCCGTC+GGG | + | chr3_4:15017434-15017453 | None:intergenic | 40.0% | |
| GAATTGTTAAGTACAGCCGT+CGG | + | chr3_4:15017435-15017454 | None:intergenic | 40.0% | |
| TGCTTGGATACCTATCAGAA+AGG | + | chr3_4:15017496-15017515 | None:intergenic | 40.0% | |
| ! | TGCTTGGTGGAGTATTTAAG+TGG | + | chr3_4:15017566-15017585 | None:intergenic | 40.0% |
| ATCATGTAGTATGGGATGCT+TGG | + | chr3_4:15017582-15017601 | None:intergenic | 40.0% | |
| CATCCCATACTACATGATGT+GGG | - | chr3_4:15017584-15017603 | Msa0492010:intron | 40.0% | |
| AGTCCCACATCATGTAGTAT+GGG | + | chr3_4:15017590-15017609 | None:intergenic | 40.0% | |
| AAGTCCCACATCATGTAGTA+TGG | + | chr3_4:15017591-15017610 | None:intergenic | 40.0% | |
| ATACTACATGATGTGGGACT+TGG | - | chr3_4:15017590-15017609 | Msa0492010:intron | 40.0% | |
| TTTGCATTTGATAGGGACTC+GGG | + | chr3_4:15017629-15017648 | None:intergenic | 40.0% | |
| TTCCTGATGGGAACAGTTAT+TGG | + | chr3_4:15017774-15017793 | None:intergenic | 40.0% | |
| TTCCCATCAGGAATCATACT+CGG | - | chr3_4:15017781-15017800 | Msa0492010:intron | 40.0% | |
| TGGTTAATGAGCTCCTCTTA+TGG | + | chr3_4:15017825-15017844 | None:intergenic | 40.0% | |
| TCATTAACCACTTGGGATCT+AGG | - | chr3_4:15017897-15017916 | Msa0492010:intron | 40.0% | |
| ! | TCTCCAGTGTTAATTTGGGT+GGG | - | chr3_4:15017954-15017973 | Msa0492010:intron | 40.0% |
| ! | ATTGGTTCAACCATCTGCAT+GGG | + | chr3_4:15018078-15018097 | None:intergenic | 40.0% |
| ! | TTGCTCTGGGTTTAGTTGAT+TGG | - | chr3_4:15018171-15018190 | Msa0492010:CDS | 40.0% |
| ! | GATTGGCCATATCTTGATTG+CGG | - | chr3_4:15018188-15018207 | Msa0492010:CDS | 40.0% |
| TCTTTGTTGAAATAGGGAGC+AGG | - | chr3_4:15018476-15018495 | Msa0492010:CDS | 40.0% | |
| ! | CTGGATAACCTCAGTTTTTC+TGG | - | chr3_4:15018515-15018534 | Msa0492010:CDS | 40.0% |
| GGGACTTTCTGTGACAATTA+TGG | - | chr3_4:15018786-15018805 | Msa0492010:intron | 40.0% | |
| !! | AGGGAATAGAGGTTAGTTTG+TGG | - | chr3_4:15019167-15019186 | Msa0492010:intron | 40.0% |
| !! | GGGAATAGAGGTTAGTTTGT+GGG | - | chr3_4:15019168-15019187 | Msa0492010:intron | 40.0% |
| AATCATCGTCATCACTAGCA+GGG | + | chr3_4:15019336-15019355 | None:intergenic | 40.0% | |
| TAATCATCGTCATCACTAGC+AGG | + | chr3_4:15019337-15019356 | None:intergenic | 40.0% | |
| ACGTTACATTAGAGTGTGTC+TGG | - | chr3_4:15019356-15019375 | Msa0492010:intron | 40.0% | |
| GACACTATCGAGTCTATTCT+TGG | - | chr3_4:15019487-15019506 | Msa0492010:intron | 40.0% | |
| CACTATCGAGTCTATTCTTG+GGG | - | chr3_4:15019489-15019508 | Msa0492010:intron | 40.0% | |
| ACTATCGAGTCTATTCTTGG+GGG | - | chr3_4:15019490-15019509 | Msa0492010:intron | 40.0% | |
| AACAAGTAACAACTGCCCTT+AGG | - | chr3_4:15019595-15019614 | Msa0492010:intron | 40.0% | |
| ACAAGTAACAACTGCCCTTA+GGG | - | chr3_4:15019596-15019615 | Msa0492010:intron | 40.0% | |
| ! | CTTTTTATCCAGTGCCCTAA+GGG | + | chr3_4:15019613-15019632 | None:intergenic | 40.0% |
| ! | ACTTTTTATCCAGTGCCCTA+AGG | + | chr3_4:15019614-15019633 | None:intergenic | 40.0% |
| TTTGTATCCTTGACATGAGG+GGG | + | chr3_4:15019842-15019861 | None:intergenic | 40.0% | |
| GCATTATCACAGTCTTCAAC+CGG | - | chr3_4:15019995-15020014 | Msa0492010:intron | 40.0% | |
| ATGCCACATAACACGTTGTG+CGG | - | chr3_4:15014697-15014716 | Msa0492010:CDS | 45.0% | |
| !!! | CTAGTGTTTTGGAGAAGGGT+AGG | + | chr3_4:15014958-15014977 | None:intergenic | 45.0% |
| ! | TGCGTTTTCCGGACAGTTTT+TGG | + | chr3_4:15015002-15015021 | None:intergenic | 45.0% |
| AGAGTTGAGTTTGCCCTGTT+TGG | + | chr3_4:15015680-15015699 | None:intergenic | 45.0% | |
| !! | ACGTTTGGTTCCACTTTTGG+AGG | + | chr3_4:15015727-15015746 | None:intergenic | 45.0% |
| !! | GAAAGGTATTTGATGAGGCG+AGG | - | chr3_4:15015755-15015774 | Msa0492010:intron | 45.0% |
| ! | AAGGTATTTGATGAGGCGAG+GGG | - | chr3_4:15015757-15015776 | Msa0492010:intron | 45.0% |
| GTGTGGCATCCTTGAAAGAT+TGG | - | chr3_4:15016171-15016190 | Msa0492010:intron | 45.0% | |
| GATGCTGGAAATAGGAACAG+CGG | + | chr3_4:15016222-15016241 | None:intergenic | 45.0% | |
| ! | GGATTTAAGGCTTCTGCAGT+TGG | - | chr3_4:15016495-15016514 | Msa0492010:intron | 45.0% |
| GTCGTGCAGATCCTAAAAGA+CGG | + | chr3_4:15017038-15017057 | None:intergenic | 45.0% | |
| ATCTGCACGACTACTAGAAG+AGG | - | chr3_4:15017047-15017066 | Msa0492010:intron | 45.0% | |
| TCATTGTGTTTCGACTGTGC+TGG | - | chr3_4:15017145-15017164 | Msa0492010:intron | 45.0% | |
| GCACCCTCTAATACTCAATG+TGG | + | chr3_4:15017273-15017292 | None:intergenic | 45.0% | |
| !! | TGCTCGATGGAGTTTTGATG+TGG | + | chr3_4:15017328-15017347 | None:intergenic | 45.0% |
| AAGTAGAATGGGATGCTCGA+TGG | + | chr3_4:15017341-15017360 | None:intergenic | 45.0% | |
| GCATCCCATTCTACTTGATG+CGG | - | chr3_4:15017345-15017364 | Msa0492010:intron | 45.0% | |
| CATCCCATTCTACTTGATGC+GGG | - | chr3_4:15017346-15017365 | Msa0492010:intron | 45.0% | |
| AGTCCCGCATCAAGTAGAAT+GGG | + | chr3_4:15017352-15017371 | None:intergenic | 45.0% | |
| AAGTCCCGCATCAAGTAGAA+TGG | + | chr3_4:15017353-15017372 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTGATAGGGACTT+GGG | + | chr3_4:15017391-15017410 | None:intergenic | 45.0% |
| AAAGGAGGGGATGACTAGAA+AGG | + | chr3_4:15017467-15017486 | None:intergenic | 45.0% | |
| ! | CCTCGATAGCTAGCTTCAAA+GGG | + | chr3_4:15017530-15017549 | None:intergenic | 45.0% |
| !! | CCTTTGAAGCTAGCTATCGA+GGG | - | chr3_4:15017528-15017547 | Msa0492010:intron | 45.0% |
| !! | CTTTGAAGCTAGCTATCGAG+GGG | - | chr3_4:15017529-15017548 | Msa0492010:intron | 45.0% |
| ! | TTTGAAGCTAGCTATCGAGG+GGG | - | chr3_4:15017530-15017549 | Msa0492010:intron | 45.0% |
| ATGTAGTATGGGATGCTTGG+TGG | + | chr3_4:15017579-15017598 | None:intergenic | 45.0% | |
| GCATCCCATACTACATGATG+TGG | - | chr3_4:15017583-15017602 | Msa0492010:intron | 45.0% | |
| ATAGGGACTCGGGTATTATG+TGG | + | chr3_4:15017619-15017638 | None:intergenic | 45.0% | |
| TGTTAACCCTCCCGTACATA+GGG | - | chr3_4:15017697-15017716 | Msa0492010:intron | 45.0% | |
| TCCCATCAGGAATCATACTC+GGG | - | chr3_4:15017782-15017801 | Msa0492010:intron | 45.0% | |
| ACCCGAGTATGATTCCTGAT+GGG | + | chr3_4:15017786-15017805 | None:intergenic | 45.0% | |
| AACCCGAGTATGATTCCTGA+TGG | + | chr3_4:15017787-15017806 | None:intergenic | 45.0% | |
| CCTCTTATGACGAATCGTTC+AGG | + | chr3_4:15017812-15017831 | None:intergenic | 45.0% | |
| CCTGAACGATTCGTCATAAG+AGG | - | chr3_4:15017809-15017828 | Msa0492010:intron | 45.0% | |
| AACAAGTGATTGGGCTCAAG+TGG | + | chr3_4:15017845-15017864 | None:intergenic | 45.0% | |
| AGAGGAGCTCATTAACCACT+TGG | - | chr3_4:15017827-15017846 | Msa0492010:intron | 45.0% | |
| GAGGAGCTCATTAACCACTT+GGG | - | chr3_4:15017828-15017847 | Msa0492010:intron | 45.0% | |
| ! | CTCTCCAGTGTTAATTTGGG+TGG | - | chr3_4:15017953-15017972 | Msa0492010:intron | 45.0% |
| TAGCCCACCCAAATTAACAC+TGG | + | chr3_4:15017960-15017979 | None:intergenic | 45.0% | |
| ! | GTTCTGTTTTCCCATGCAGA+TGG | - | chr3_4:15018065-15018084 | Msa0492010:intron | 45.0% |
| !! | CATTGGTTCAACCATCTGCA+TGG | + | chr3_4:15018079-15018098 | None:intergenic | 45.0% |
| GATGGTTGAACCAATGCTGA+AGG | - | chr3_4:15018083-15018102 | Msa0492010:intron | 45.0% | |
| AATGATACTGGAGCTGACCA+CGG | + | chr3_4:15018667-15018686 | None:intergenic | 45.0% | |
| AATGTGGTACACTGATGCTG+AGG | - | chr3_4:15018923-15018942 | Msa0492010:intron | 45.0% | |
| GGAGAATGAAAGTCAAGGTG+AGG | - | chr3_4:15019420-15019439 | Msa0492010:intron | 45.0% | |
| TGGTGAAGATTCATGGAGAG+AGG | + | chr3_4:15019960-15019979 | None:intergenic | 45.0% | |
| TCTCCATGAATCTTCACCAG+AGG | - | chr3_4:15019961-15019980 | Msa0492010:intron | 45.0% | |
| CTCCATGAATCTTCACCAGA+GGG | - | chr3_4:15019962-15019981 | Msa0492010:intron | 45.0% | |
| TATCACAGTCTTCAACCGGT+AGG | - | chr3_4:15019999-15020018 | Msa0492010:intron | 45.0% | |
| AAATGCCACCTTCTTCGAAC+CGG | + | chr3_4:15020035-15020054 | None:intergenic | 45.0% | |
| ACACATTGTGGCACTAACGT+AGG | + | chr3_4:15020073-15020092 | None:intergenic | 45.0% | |
| !! | TTTGGTGGTACTGGTACAGT+AGG | - | chr3_4:15020298-15020317 | Msa0492010:intron | 45.0% |
| TGCCACATAACACGTTGTGC+GGG | - | chr3_4:15014698-15014717 | Msa0492010:CDS | 50.0% | |
| AATGGATGAACCAACTCCGC+CGG | + | chr3_4:15015035-15015054 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTTCATCCATTCC+AGG | - | chr3_4:15015037-15015056 | Msa0492010:intron | 50.0% |
| GGACGACAATGAGTCAGGAT+GGG | + | chr3_4:15015802-15015821 | None:intergenic | 50.0% | |
| ACTAGGGACGACAATGAGTC+AGG | + | chr3_4:15015807-15015826 | None:intergenic | 50.0% | |
| GCAGATAATAGCTCGGCTGT+TGG | - | chr3_4:15016063-15016082 | Msa0492010:intron | 50.0% | |
| TCACAGCTCCAATGTGAGTG+TGG | - | chr3_4:15016154-15016173 | Msa0492010:intron | 50.0% | |
| CAAGGATGCCACACTCACAT+TGG | + | chr3_4:15016165-15016184 | None:intergenic | 50.0% | |
| GCTTCTGCAGTTGGCAAACT+TGG | - | chr3_4:15016504-15016523 | Msa0492010:intron | 50.0% | |
| TCTGCAGTTGGCAAACTTGG+AGG | - | chr3_4:15016507-15016526 | Msa0492010:intron | 50.0% | |
| ! | GTGGTTCTGTGATAGGGACT+TGG | + | chr3_4:15017392-15017411 | None:intergenic | 50.0% |
| TCCCTATCACAGAACCACCT+CGG | - | chr3_4:15017394-15017413 | Msa0492010:intron | 50.0% | |
| ! | TCCGAGGTGGTTCTGTGATA+GGG | + | chr3_4:15017398-15017417 | None:intergenic | 50.0% |
| ! | TTCCGAGGTGGTTCTGTGAT+AGG | + | chr3_4:15017399-15017418 | None:intergenic | 50.0% |
| TATCACAGAACCACCTCGGA+AGG | - | chr3_4:15017398-15017417 | Msa0492010:intron | 50.0% | |
| AGGGGATGACTAGAAAGGTC+AGG | + | chr3_4:15017462-15017481 | None:intergenic | 50.0% | |
| ! | CGATAGCTAGCTTCAAAGGG+AGG | + | chr3_4:15017527-15017546 | None:intergenic | 50.0% |
| !! | CCCTTTGAAGCTAGCTATCG+AGG | - | chr3_4:15017527-15017546 | Msa0492010:intron | 50.0% |
| ! | CCCTCGATAGCTAGCTTCAA+AGG | + | chr3_4:15017531-15017550 | None:intergenic | 50.0% |
| GTGTTAACCCTCCCGTACAT+AGG | - | chr3_4:15017696-15017715 | Msa0492010:intron | 50.0% | |
| GTTAACCCTCCCGTACATAG+GGG | - | chr3_4:15017698-15017717 | Msa0492010:intron | 50.0% | |
| AGCCGAACTCCGGATTACTA+GGG | + | chr3_4:15017731-15017750 | None:intergenic | 50.0% | |
| GCTGGCAGGTAAGTAAAGTC+TGG | - | chr3_4:15017748-15017767 | Msa0492010:intron | 50.0% | |
| GGCCAATAACTGTTCCCATC+AGG | - | chr3_4:15017769-15017788 | Msa0492010:intron | 50.0% | |
| GAATCGAACATGAGACCTCG+AGG | + | chr3_4:15017934-15017953 | None:intergenic | 50.0% | |
| TACGTTGCAGCCTTCAGCAT+TGG | + | chr3_4:15018096-15018115 | None:intergenic | 50.0% | |
| ! | GCTAGCACGTCTACGAGTTT+TGG | - | chr3_4:15018813-15018832 | Msa0492010:intron | 50.0% |
| GAAAGTCAAGGTGAGGACTC+TGG | - | chr3_4:15019427-15019446 | Msa0492010:intron | 50.0% | |
| TGCAGATGACCAACATGACC+CGG | - | chr3_4:15019781-15019800 | Msa0492010:intron | 50.0% | |
| CATCTGCTTCACCTGTTTCC+GGG | + | chr3_4:15019802-15019821 | None:intergenic | 50.0% | |
| GCATCTGCTTCACCTGTTTC+CGG | + | chr3_4:15019803-15019822 | None:intergenic | 50.0% | |
| AGCAGATGCTGCAGCTAAAG+AGG | - | chr3_4:15019814-15019833 | Msa0492010:intron | 50.0% | |
| !! | ACTGTGTTTGGTAGCGAGGA+AGG | - | chr3_4:15019908-15019927 | Msa0492010:intron | 50.0% |
| CACCCTCTGGTGAAGATTCA+TGG | + | chr3_4:15019967-15019986 | None:intergenic | 50.0% | |
| AATGCATGCAAGTCACCCTC+TGG | + | chr3_4:15019980-15019999 | None:intergenic | 50.0% | |
| ACCGGTAGGAAACTCCATTC+CGG | - | chr3_4:15020013-15020032 | Msa0492010:intron | 50.0% | |
| ACCGGAATGGAGTTTCCTAC+CGG | + | chr3_4:15020017-15020036 | None:intergenic | 50.0% | |
| ! | ACTCCATTCCGGTTCGAAGA+AGG | - | chr3_4:15020024-15020043 | Msa0492010:intron | 50.0% |
| GACCCGCACAACGTGTTATG+TGG | + | chr3_4:15014703-15014722 | None:intergenic | 55.0% | |
| ! | GCAAGTCTGCGTGCGTTTTC+CGG | + | chr3_4:15015013-15015032 | None:intergenic | 55.0% |
| GAAAACGCACGCAGACTTGC+CGG | - | chr3_4:15015013-15015032 | Msa0492010:intron | 55.0% | |
| GGGACGACAATGAGTCAGGA+TGG | + | chr3_4:15015803-15015822 | None:intergenic | 55.0% | |
| GCTGGAAATAGGAACAGCGG+CGG | + | chr3_4:15016219-15016238 | None:intergenic | 55.0% | |
| GAGAGCGAGCCATTTCTCAG+AGG | + | chr3_4:15016805-15016824 | None:intergenic | 55.0% | |
| TGCTCGACAGCTCAAGCGTT+TGG | - | chr3_4:15017290-15017309 | Msa0492010:intron | 55.0% | |
| GCTCGACAGCTCAAGCGTTT+GGG | - | chr3_4:15017291-15017310 | Msa0492010:intron | 55.0% | |
| CTCGACAGCTCAAGCGTTTG+GGG | - | chr3_4:15017292-15017311 | Msa0492010:intron | 55.0% | |
| ! | AAGGGAGGTCTCGAAGTGCT+TGG | + | chr3_4:15017512-15017531 | None:intergenic | 55.0% |
| GCCCCTAGTAATCCGGAGTT+CGG | - | chr3_4:15017726-15017745 | Msa0492010:intron | 55.0% | |
| GCCGAACTCCGGATTACTAG+GGG | + | chr3_4:15017730-15017749 | None:intergenic | 55.0% | |
| CAGCCGAACTCCGGATTACT+AGG | + | chr3_4:15017732-15017751 | None:intergenic | 55.0% | |
| CTAGTAATCCGGAGTTCGGC+TGG | - | chr3_4:15017730-15017749 | Msa0492010:intron | 55.0% | |
| GCACACTCCTAGATCCCAAG+TGG | + | chr3_4:15017907-15017926 | None:intergenic | 55.0% | |
| TCGAACATGAGACCTCGAGG+AGG | + | chr3_4:15017931-15017950 | None:intergenic | 55.0% | |
| AGTCAAGGTGAGGACTCTGG+TGG | - | chr3_4:15019430-15019449 | Msa0492010:intron | 55.0% | |
| AACAACTGCCCTTAGGGCAC+TGG | - | chr3_4:15019602-15019621 | Msa0492010:intron | 55.0% | |
| GACCAACATGACCCGGAAAC+AGG | - | chr3_4:15019788-15019807 | Msa0492010:intron | 55.0% | |
| CACCTGTTTCCGGGTCATGT+TGG | + | chr3_4:15019793-15019812 | None:intergenic | 55.0% | |
| AGAGGATCCCCCTCATGTCA+AGG | - | chr3_4:15019832-15019851 | Msa0492010:intron | 55.0% | |
| !! | GGAGACTGTGTTTGGTAGCG+AGG | - | chr3_4:15019904-15019923 | Msa0492010:intron | 55.0% |
| !! | GTGTTTGGTAGCGAGGAAGG+AGG | - | chr3_4:15019911-15019930 | Msa0492010:intron | 55.0% |
| CCACCTTCTTCGAACCGGAA+TGG | + | chr3_4:15020030-15020049 | None:intergenic | 55.0% | |
| ! | CCATTCCGGTTCGAAGAAGG+TGG | - | chr3_4:15020027-15020046 | Msa0492010:intron | 55.0% |
| AACACGTTGTGCGGGTCGTG+TGG | - | chr3_4:15014706-15014725 | Msa0492010:CDS | 60.0% | |
| AATAGGAACAGCGGCGGTGC+TGG | + | chr3_4:15016213-15016232 | None:intergenic | 60.0% | |
| TACAGCCGTCGGGACGACAT+CGG | + | chr3_4:15017424-15017443 | None:intergenic | 60.0% | |
| ACCCTCCCGTACATAGGGGA+AGG | - | chr3_4:15017702-15017721 | Msa0492010:intron | 60.0% | |
| CCCTTCCCCTATGTACGGGA+GGG | + | chr3_4:15017706-15017725 | None:intergenic | 60.0% | |
| CCCTCCCGTACATAGGGGAA+GGG | - | chr3_4:15017703-15017722 | Msa0492010:intron | 60.0% | |
| CCTCCCGTACATAGGGGAAG+GGG | - | chr3_4:15017704-15017723 | Msa0492010:intron | 60.0% | |
| GGAAGGGGCCCCTAGTAATC+CGG | - | chr3_4:15017719-15017738 | Msa0492010:intron | 60.0% | |
| TAATCCGGAGTTCGGCTGGC+AGG | - | chr3_4:15017734-15017753 | Msa0492010:intron | 60.0% | |
| CTTACCTGCCAGCCGAACTC+CGG | + | chr3_4:15017741-15017760 | None:intergenic | 60.0% | |
| ! | TAGGAGTGTGCTCCTCCTCG+AGG | - | chr3_4:15017916-15017935 | Msa0492010:intron | 60.0% |
| AACGCACGCAGACTTGCCGG+CGG | - | chr3_4:15015016-15015035 | Msa0492010:intron | 65.0% | |
| ACGACATCGGCCTTCCGAGG+TGG | + | chr3_4:15017411-15017430 | None:intergenic | 65.0% | |
| GAAGGCCGATGTCGTCCCGA+CGG | - | chr3_4:15017416-15017435 | Msa0492010:intron | 65.0% | |
| CCCCTTCCCCTATGTACGGG+AGG | + | chr3_4:15017707-15017726 | None:intergenic | 65.0% | |
| GGGCCCCTTCCCCTATGTAC+GGG | + | chr3_4:15017710-15017729 | None:intergenic | 65.0% | |
| GGGGCCCCTTCCCCTATGTA+CGG | + | chr3_4:15017711-15017730 | None:intergenic | 65.0% | |
| CGCAGACTTGCCGGCGGAGT+TGG | - | chr3_4:15015022-15015041 | Msa0492010:intron | 70.0% | |
| GGGACGACATCGGCCTTCCG+AGG | + | chr3_4:15017414-15017433 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 15014316 | 15020387 | 15014316 | ID=Msa0492010;Name=Msa0492010 |
| chr3_4 | mRNA | 15014316 | 15020387 | 15014316 | ID=Msa0492010-mRNA-1;Parent=Msa0492010;Name=Msa0492010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.87|0.88|0.88|1|1|9|147|417 |
| chr3_4 | exon | 15014316 | 15014917 | 15014316 | ID=Msa0492010-mRNA-1:exon:4453;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15015192 | 15015387 | 15015192 | ID=Msa0492010-mRNA-1:exon:4452;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15015526 | 15015615 | 15015526 | ID=Msa0492010-mRNA-1:exon:4451;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15015860 | 15015953 | 15015860 | ID=Msa0492010-mRNA-1:exon:4450;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15016591 | 15016619 | 15016591 | ID=Msa0492010-mRNA-1:exon:4449;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15017635 | 15017713 | 15017635 | ID=Msa0492010-mRNA-1:exon:4448;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15018104 | 15018216 | 15018104 | ID=Msa0492010-mRNA-1:exon:4447;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15018454 | 15018636 | 15018454 | ID=Msa0492010-mRNA-1:exon:4446;Parent=Msa0492010-mRNA-1 |
| chr3_4 | exon | 15020373 | 15020387 | 15020373 | ID=Msa0492010-mRNA-1:exon:4445;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15020373 | 15020387 | 15020373 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15018454 | 15018636 | 15018454 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15018104 | 15018216 | 15018104 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15017635 | 15017713 | 15017635 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15016591 | 15016619 | 15016591 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15015860 | 15015953 | 15015860 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15015526 | 15015615 | 15015526 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15015192 | 15015387 | 15015192 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | CDS | 15014463 | 15014917 | 15014463 | ID=Msa0492010-mRNA-1:cds;Parent=Msa0492010-mRNA-1 |
| chr3_4 | three_prime_UTR | 15014316 | 15014462 | 15014316 | ID=Msa0492010-mRNA-1:three_prime_utr;Parent=Msa0492010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
