Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397010 | AES68942.2 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397010 | G7IW53 | 94.349 | 407 | 23 | 0 | 11 | 417 | 47 | 453 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa0397010 | 0.810560 | 1.084630e-50 | -8.615850e-47 |
| Msa0396980 | Msa0397010 | 0.987300 | 9.143023e-170 | -8.615850e-47 |
| Msa0397010 | Msa0492010 | 0.994267 | 7.092586e-206 | -8.615850e-47 |
| Msa0288240 | Msa0397010 | 0.810027 | 1.413809e-50 | -8.615850e-47 |
| Msa0326670 | Msa0397010 | 0.818886 | 1.550753e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397010 | MtrunA17_Chr3g0084341 | 94.486 | 399 | 22 | 0 | 19 | 417 | 1 | 399 | 0.0 | 769 |
| Msa0397010 | MtrunA17_Chr4g0046731 | 86.397 | 272 | 37 | 0 | 19 | 290 | 1 | 272 | 2.94e-161 | 454 |
| Msa0397010 | MtrunA17_Chr1g0169631 | 96.429 | 28 | 1 | 0 | 39 | 66 | 3 | 30 | 1.21e-13 | 66.2 |
| Msa0397010 | MtrunA17_Chr1g0148071 | 89.286 | 28 | 3 | 0 | 39 | 66 | 31 | 58 | 3.45e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397010 | AT1G50910.1 | 56.800 | 250 | 104 | 3 | 21 | 268 | 4 | 251 | 2.61e-80 | 256 |
| Msa0397010 | AT1G50910.2 | 49.000 | 100 | 47 | 3 | 171 | 268 | 11 | 108 | 5.13e-19 | 88.2 |
Find 91 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCATTTCCCATTAAA+TGG | 0.136928 | 3_2:+15962902 | None:intergenic |
| GCATCTGCTTCACCTGTTTC+CGG | 0.170365 | 3_2:+15963243 | None:intergenic |
| GGCTAAGTCATTCCATTTAA+TGG | 0.180830 | 3_2:-15962914 | Msa0397010:CDS |
| ATTAGGTGAGGAGGGATTTA+AGG | 0.196911 | 3_2:-15966561 | Msa0397010:intron |
| GGGACTTTCTGTGACAATTA+TGG | 0.254227 | 3_2:-15964257 | Msa0397010:CDS |
| AAAAGATGAATCTTCTGTTT+TGG | 0.292424 | 3_2:+15966472 | None:intergenic |
| CTTCATAAGATGCTGGAAAT+AGG | 0.297223 | 3_2:+15966816 | None:intergenic |
| GCTAGCACGTCTACGAGTTT+TGG | 0.318715 | 3_2:-15964230 | Msa0397010:CDS |
| GCTAAGTCATTCCATTTAAT+GGG | 0.320185 | 3_2:-15962913 | Msa0397010:CDS |
| CATCTGCTTCACCTGTTTCC+GGG | 0.333787 | 3_2:+15963244 | None:intergenic |
| GCTTCTGCAGTTGGCAAACT+TGG | 0.355509 | 3_2:-15966539 | Msa0397010:CDS |
| ACTTGAGAGGAAGCATAAAA+AGG | 0.361049 | 3_2:-15963644 | Msa0397010:CDS |
| GACACTATCGAGTCTATTCT+TGG | 0.365745 | 3_2:-15963556 | Msa0397010:CDS |
| CACCCTCTGGTGAAGATTCA+TGG | 0.372177 | 3_2:+15963079 | None:intergenic |
| AGTGGAACCCATGCTCTTGC+AGG | 0.400157 | 3_2:-15968736 | None:intergenic |
| TCTTGTATACCAATCTTTCA+AGG | 0.403473 | 3_2:+15966863 | None:intergenic |
| AATCTTTCTGTTCAAGCATC+AGG | 0.410309 | 3_2:-15963589 | Msa0397010:CDS |
| AAAAGTCAATTCATTCTTCA+CGG | 0.421028 | 3_2:+15962687 | None:intergenic |
| GACCAACATGACCCGGAAAC+AGG | 0.424431 | 3_2:-15963255 | Msa0397010:CDS |
| ATCAAACAAAAGATGACAAA+GGG | 0.441607 | 3_2:-15962879 | Msa0397010:CDS |
| ACGTTACATTAGAGTGTGTC+TGG | 0.443288 | 3_2:-15963687 | Msa0397010:CDS |
| ACACTATCGAGTCTATTCTT+GGG | 0.448985 | 3_2:-15963555 | Msa0397010:CDS |
| TACTGAATTTGAAACAATTG+AGG | 0.464733 | 3_2:-15966932 | Msa0397010:CDS |
| ACCGGTAGGAAACTCCATTC+CGG | 0.467588 | 3_2:-15963030 | Msa0397010:CDS |
| CTATTTCCAGCATCTTATGA+AGG | 0.472658 | 3_2:-15966815 | Msa0397010:intron |
| AATAGGAACAGCGGCGGTGC+TGG | 0.473487 | 3_2:+15966833 | None:intergenic |
| GGATTTAAGGCTTCTGCAGT+TGG | 0.473619 | 3_2:-15966548 | Msa0397010:CDS |
| AATAACTCATGAGGGAATAG+AGG | 0.478056 | 3_2:-15963887 | Msa0397010:intron |
| AGCAGATGCTGCAGCTAAAG+AGG | 0.485173 | 3_2:-15963229 | Msa0397010:CDS |
| TACGTTGCAGCCTTCAGCAT+TGG | 0.487150 | 3_2:+15964950 | None:intergenic |
| TCTGCAGTTGGCAAACTTGG+AGG | 0.495185 | 3_2:-15966536 | Msa0397010:CDS |
| AAATGCCACCTTCTTCGAAC+CGG | 0.500567 | 3_2:+15963011 | None:intergenic |
| TAATCATCGTCATCACTAGC+AGG | 0.508322 | 3_2:+15963709 | None:intergenic |
| GAAAATGCAATGATGAAAAG+AGG | 0.510608 | 3_2:-15966042 | Msa0397010:CDS |
| GATAATTTATTAGGTGAGGA+GGG | 0.511623 | 3_2:-15966569 | Msa0397010:intron |
| CACCTGTTTCCGGGTCATGT+TGG | 0.511939 | 3_2:+15963253 | None:intergenic |
| GCATTATCACAGTCTTCAAC+CGG | 0.513144 | 3_2:-15963048 | Msa0397010:CDS |
| TGTTTCATGACAGCTTGAAA+AGG | 0.514585 | 3_2:-15966066 | Msa0397010:intron |
| TTTAGATTGCAAGGATTCGA+TGG | 0.520597 | 3_2:-15966956 | Msa0397010:CDS |
| ACTGAATTTGAAACAATTGA+GGG | 0.522339 | 3_2:-15966931 | Msa0397010:CDS |
| CATTGTTGATTTGTTCAACA+TGG | 0.528069 | 3_2:-15963944 | Msa0397010:CDS |
| ACTCCATTCCGGTTCGAAGA+AGG | 0.530166 | 3_2:-15963019 | Msa0397010:CDS |
| TACATACCTTCATAAGATGC+TGG | 0.531921 | 3_2:+15966809 | None:intergenic |
| TAAAATCATCGATTTGCGAC+GGG | 0.534590 | 3_2:+15963163 | None:intergenic |
| CCACCTTCTTCGAACCGGAA+TGG | 0.537805 | 3_2:+15963016 | None:intergenic |
| GCAGATAATAGCTCGGCTGT+TGG | 0.539928 | 3_2:-15966980 | Msa0397010:intron |
| CACTATCGAGTCTATTCTTG+GGG | 0.541164 | 3_2:-15963554 | Msa0397010:CDS |
| TGATAATTTATTAGGTGAGG+AGG | 0.543150 | 3_2:-15966570 | Msa0397010:intron |
| GCTGTTGGATTTAGATTGCA+AGG | 0.544705 | 3_2:-15966965 | Msa0397010:CDS |
| TCATACCTCCTGCAAGAGCA+TGG | 0.544829 | 3_2:+15968728 | None:intergenic |
| CAAGGATGCCACACTCACAT+TGG | 0.547673 | 3_2:+15966881 | None:intergenic |
| ACTGTGTTTGGTAGCGAGGA+AGG | 0.549590 | 3_2:-15963135 | Msa0397010:CDS |
| GTGTGGCATCCTTGAAAGAT+TGG | 0.553976 | 3_2:-15966872 | Msa0397010:CDS |
| GAAAGTCAAGGTGAGGACTC+TGG | 0.554428 | 3_2:-15963616 | Msa0397010:CDS |
| TTTGGTGGTACTGGTACAGT+AGG | 0.557194 | 3_2:-15962745 | Msa0397010:three_prime_UTR |
| TATTTGTATCCTTGACATGA+GGG | 0.557999 | 3_2:+15963202 | None:intergenic |
| TTAGATTGCAAGGATTCGAT+GGG | 0.566475 | 3_2:-15966955 | Msa0397010:CDS |
| TTTGTTTGCAGATAATAGCT+CGG | 0.568626 | 3_2:-15966987 | Msa0397010:intron |
| GGAGACTGTGTTTGGTAGCG+AGG | 0.571251 | 3_2:-15963139 | Msa0397010:CDS |
| CTCCATGAATCTTCACCAGA+GGG | 0.573969 | 3_2:-15963081 | Msa0397010:CDS |
| ACCGGAATGGAGTTTCCTAC+CGG | 0.578498 | 3_2:+15963029 | None:intergenic |
| TGTGTTAACTAGCAATGCTA+AGG | 0.578852 | 3_2:-15962935 | Msa0397010:CDS |
| AATGCATGCAAGTCACCCTC+TGG | 0.581592 | 3_2:+15963066 | None:intergenic |
| TGCAGATGACCAACATGACC+CGG | 0.583493 | 3_2:-15963262 | Msa0397010:intron |
| GTATTTGTATCCTTGACATG+AGG | 0.592724 | 3_2:+15963201 | None:intergenic |
| GATCAAACAAAAGATGACAA+AGG | 0.597416 | 3_2:-15962880 | Msa0397010:CDS |
| CATACCTCCTGCAAGAGCAT+GGG | 0.598263 | 3_2:+15968729 | None:intergenic |
| TTTGTATCCTTGACATGAGG+GGG | 0.599355 | 3_2:+15963204 | None:intergenic |
| ATAAGTATATATTACTTGAG+AGG | 0.601355 | 3_2:-15963657 | Msa0397010:CDS |
| ACTTACTAATGTAAATCCAA+AGG | 0.608539 | 3_2:-15962839 | Msa0397010:CDS |
| TCACAGCTCCAATGTGAGTG+TGG | 0.609139 | 3_2:-15966889 | Msa0397010:CDS |
| TGGTGAAGATTCATGGAGAG+AGG | 0.611678 | 3_2:+15963086 | None:intergenic |
| CCATTCCGGTTCGAAGAAGG+TGG | 0.616651 | 3_2:-15963016 | Msa0397010:CDS |
| ATAAAATCATCGATTTGCGA+CGG | 0.620309 | 3_2:+15963162 | None:intergenic |
| GGAGAATGAAAGTCAAGGTG+AGG | 0.625016 | 3_2:-15963623 | Msa0397010:CDS |
| ATTTGTATCCTTGACATGAG+GGG | 0.627428 | 3_2:+15963203 | None:intergenic |
| ATCTGCACGACTACTAGAAG+AGG | 0.629442 | 3_2:-15965996 | Msa0397010:intron |
| GGAACCCATGCTCTTGCAGG+AGG | 0.635806 | 3_2:-15968733 | None:intergenic |
| TCTCCATGAATCTTCACCAG+AGG | 0.640554 | 3_2:-15963082 | Msa0397010:CDS |
| GTACTACTTTGTACACATTG+TGG | 0.656666 | 3_2:+15962961 | None:intergenic |
| AATCATCGTCATCACTAGCA+GGG | 0.659881 | 3_2:+15963710 | None:intergenic |
| GATGGTTGAACCAATGCTGA+AGG | 0.663541 | 3_2:-15964960 | Msa0397010:CDS |
| GTGTTTGGTAGCGAGGAAGG+AGG | 0.667909 | 3_2:-15963132 | Msa0397010:CDS |
| GTCGTGCAGATCCTAAAAGA+CGG | 0.669319 | 3_2:+15966008 | None:intergenic |
| TATCACAGTCTTCAACCGGT+AGG | 0.674568 | 3_2:-15963044 | Msa0397010:CDS |
| GATGCTGGAAATAGGAACAG+CGG | 0.692299 | 3_2:+15966824 | None:intergenic |
| AGTCAAGGTGAGGACTCTGG+TGG | 0.692733 | 3_2:-15963613 | Msa0397010:CDS |
| ACACATTGTGGCACTAACGT+AGG | 0.699937 | 3_2:+15962973 | None:intergenic |
| GCTGGAAATAGGAACAGCGG+CGG | 0.714092 | 3_2:+15966827 | None:intergenic |
| TCAAACAAAAGATGACAAAG+GGG | 0.719091 | 3_2:-15962878 | Msa0397010:CDS |
| ACTATCGAGTCTATTCTTGG+GGG | 0.749201 | 3_2:-15963553 | Msa0397010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATGTTAAATAACTT+TGG | - | chr3_2:15962800-15962819 | Msa0397010:three_prime_UTR | 10.0% |
| !!! | AATATTTTTTAAACAAGTTT+TGG | - | chr3_2:15962860-15962879 | Msa0397010:CDS | 10.0% |
| !! | GAAAATCAAAATTAAAATAA+TGG | + | chr3_2:15963429-15963448 | None:intergenic | 10.0% |
| !! | AATTATAATACATAAAACAT+GGG | + | chr3_2:15967216-15967235 | None:intergenic | 10.0% |
| !! | TAATTATAATACATAAAACA+TGG | + | chr3_2:15967217-15967236 | None:intergenic | 10.0% |
| !!! | GAAAATTTTAGATATTTGTA+AGG | + | chr3_2:15962827-15962846 | None:intergenic | 15.0% |
| !! | CTTGTTTAAAAAATATTAGA+GGG | + | chr3_2:15962857-15962876 | None:intergenic | 15.0% |
| !! | ACTTGTTTAAAAAATATTAG+AGG | + | chr3_2:15962858-15962877 | None:intergenic | 15.0% |
| !! | TAAAATTTATTTAAGCAATG+AGG | - | chr3_2:15963033-15963052 | Msa0397010:CDS | 15.0% |
| !!! | TAATTCATTTGAAATATGAA+TGG | + | chr3_2:15963124-15963143 | None:intergenic | 15.0% |
| !!! | GTTAAAAAAAATCTGAATTT+TGG | + | chr3_2:15963185-15963204 | None:intergenic | 15.0% |
| !! | AAATTAAACTTGTAAAACTT+TGG | + | chr3_2:15964265-15964284 | None:intergenic | 15.0% |
| !! | TACTTCATAATTCATAATAT+AGG | - | chr3_2:15966600-15966619 | Msa0397010:intron | 15.0% |
| !!! | AATTAAATTTAACTTTGTCA+AGG | - | chr3_2:15967232-15967251 | Msa0397010:intron | 15.0% |
| !! | AGTAGAAATTTATTCTTAAT+TGG | - | chr3_2:15967999-15968018 | Msa0397010:intron | 15.0% |
| !!! | ATTAAAATAATGGAATAACC+TGG | + | chr3_2:15963419-15963438 | None:intergenic | 20.0% |
| !! | AGCTACAAATTTAATATGTT+AGG | - | chr3_2:15963693-15963712 | Msa0397010:CDS | 20.0% |
| !!! | ATTCGTTTTCTTTTTTACTA+GGG | + | chr3_2:15964184-15964203 | None:intergenic | 20.0% |
| !! | TTAAATATCCCTTATGTTTA+CGG | - | chr3_2:15964237-15964256 | Msa0397010:CDS | 20.0% |
| !! | TAATTATATTCAGCAACATT+TGG | + | chr3_2:15964300-15964319 | None:intergenic | 20.0% |
| !! | TGAATATAATTACTTGTGTA+TGG | - | chr3_2:15964308-15964327 | Msa0397010:intron | 20.0% |
| !!! | TATTATGAACTTTTGAAATG+CGG | + | chr3_2:15964334-15964353 | None:intergenic | 20.0% |
| !! | CATTTCAAAAGTTCATAATA+TGG | - | chr3_2:15964334-15964353 | Msa0397010:intron | 20.0% |
| !!! | ATGTGGTTTGATAATTTATT+AGG | - | chr3_2:15964826-15964845 | Msa0397010:intron | 20.0% |
| !!! | GTTATTTCTTTCAGTTTTTT+TGG | - | chr3_2:15964971-15964990 | Msa0397010:intron | 20.0% |
| !!! | AGTTTTTCTAATTATATGTG+TGG | - | chr3_2:15964994-15965013 | Msa0397010:intron | 20.0% |
| !! | TCAAAATGTGATGTTATTAT+AGG | - | chr3_2:15965278-15965297 | Msa0397010:intron | 20.0% |
| !! | TGATTGAAATAAGAAAAAAG+AGG | + | chr3_2:15966404-15966423 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATCGTATTTACA+GGG | + | chr3_2:15966687-15966706 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAATCGTATTTAC+AGG | + | chr3_2:15966688-15966707 | None:intergenic | 20.0% |
| !! | ATACGATTTCAAAAAACTTT+CGG | - | chr3_2:15966692-15966711 | Msa0397010:intron | 20.0% |
| !!! | CATATTTTTTCTGTATACTT+TGG | - | chr3_2:15966989-15967008 | Msa0397010:intron | 20.0% |
| !! | ATCAATAAAAATAACTCATG+AGG | - | chr3_2:15967508-15967527 | Msa0397010:intron | 20.0% |
| !! | TCAATAAAAATAACTCATGA+GGG | - | chr3_2:15967509-15967528 | Msa0397010:intron | 20.0% |
| !! | ATAAGTATATATTACTTGAG+AGG | - | chr3_2:15967747-15967766 | Msa0397010:intron | 20.0% |
| !!! | CAATTTTGTAATGAATCTTT+TGG | - | chr3_2:15968641-15968660 | Msa0397010:intron | 20.0% |
| !! | TTAAATTTTGCAAGAGAGAT+GGG | - | chr3_2:15963255-15963274 | Msa0397010:CDS | 25.0% |
| ! | TAATCACTTGTGATATTGTT+TGG | + | chr3_2:15963622-15963641 | None:intergenic | 25.0% |
| ! | AAGGTAAAGTTATGTTTGTT+TGG | - | chr3_2:15963888-15963907 | Msa0397010:CDS | 25.0% |
| ! | CAAAATCAATTATACTTCAG+AGG | - | chr3_2:15964013-15964032 | Msa0397010:intron | 25.0% |
| !!! | CATTCGTTTTCTTTTTTACT+AGG | + | chr3_2:15964185-15964204 | None:intergenic | 25.0% |
| !! | TACTGAATTTGAAACAATTG+AGG | - | chr3_2:15964472-15964491 | Msa0397010:intron | 25.0% |
| !! | ACTGAATTTGAAACAATTGA+GGG | - | chr3_2:15964473-15964492 | Msa0397010:intron | 25.0% |
| ! | ACAGTCAGATAAATAACTAA+GGG | + | chr3_2:15964715-15964734 | None:intergenic | 25.0% |
| ! | TACAGTCAGATAAATAACTA+AGG | + | chr3_2:15964716-15964735 | None:intergenic | 25.0% |
| ! | ATTTGTGTAGAAATTCGAAA+GGG | - | chr3_2:15964741-15964760 | Msa0397010:intron | 25.0% |
| !! | GTTTGATAATTTATTAGGTG+AGG | - | chr3_2:15964831-15964850 | Msa0397010:intron | 25.0% |
| !! | AAAAGATGAATCTTCTGTTT+TGG | + | chr3_2:15964935-15964954 | None:intergenic | 25.0% |
| !! | TTTTCTAATTATATGTGTGG+AGG | - | chr3_2:15964997-15965016 | Msa0397010:intron | 25.0% |
| ! | ATATTAAACGAAGATAACTG+AGG | - | chr3_2:15965030-15965049 | Msa0397010:intron | 25.0% |
| ! | TTTGTGGTTAAAGAAAAAGT+AGG | - | chr3_2:15965098-15965117 | Msa0397010:intron | 25.0% |
| !!! | TGATGAAAAGAGGAATTTTT+TGG | - | chr3_2:15965372-15965391 | Msa0397010:intron | 25.0% |
| !!! | TCGCAATCTTAGATTTTTTT+TGG | - | chr3_2:15966035-15966054 | Msa0397010:CDS | 25.0% |
| ! | GATTATGTAAACAAGTGATT+GGG | + | chr3_2:15966215-15966234 | None:intergenic | 25.0% |
| ! | TGATTATGTAAACAAGTGAT+TGG | + | chr3_2:15966216-15966235 | None:intergenic | 25.0% |
| ! | ATCATAGATTTAACCATAAG+AGG | - | chr3_2:15966232-15966251 | Msa0397010:intron | 25.0% |
| ! | TTCATTTATACTAATTGCTC+TGG | - | chr3_2:15966518-15966537 | Msa0397010:CDS | 25.0% |
| ! | TCATTTATACTAATTGCTCT+GGG | - | chr3_2:15966519-15966538 | Msa0397010:CDS | 25.0% |
| ! | TGAATTATGAAGTAAAAGAG+AGG | + | chr3_2:15966594-15966613 | None:intergenic | 25.0% |
| ! | TAATTCATAATATAGGTACC+AGG | - | chr3_2:15966607-15966626 | Msa0397010:intron | 25.0% |
| !!! | TTTTGAAATCGTATTTACAG+GGG | + | chr3_2:15966686-15966705 | None:intergenic | 25.0% |
| ! | TTACAGATCTTTGTTGAAAT+AGG | - | chr3_2:15966830-15966849 | Msa0397010:CDS | 25.0% |
| ! | TACAGATCTTTGTTGAAATA+GGG | - | chr3_2:15966831-15966850 | Msa0397010:CDS | 25.0% |
| !!! | ATTTTTTACCAGAAAAACTG+AGG | + | chr3_2:15966887-15966906 | None:intergenic | 25.0% |
| !!! | TGAAGCATTTTACCAAAATT+TGG | - | chr3_2:15966928-15966947 | Msa0397010:CDS | 25.0% |
| ! | TACAGAAAAAATATGACTCA+AGG | + | chr3_2:15966984-15967003 | None:intergenic | 25.0% |
| ! | ATCTCACTATTAAATAGTCA+AGG | + | chr3_2:15967097-15967116 | None:intergenic | 25.0% |
| ! | AGGTTTCATCATAGTTAAAT+TGG | - | chr3_2:15967252-15967271 | Msa0397010:intron | 25.0% |
| ! | AAATTGGAAGTTGTTTAATG+TGG | - | chr3_2:15967268-15967287 | Msa0397010:intron | 25.0% |
| ! | GAAGTACAAGTGATATTATT+TGG | - | chr3_2:15967326-15967345 | Msa0397010:intron | 25.0% |
| ! | AAGTAATATCTGCATAAGAA+TGG | + | chr3_2:15967438-15967457 | None:intergenic | 25.0% |
| ! | TGATAAATGTTTCGTTAACA+TGG | - | chr3_2:15968056-15968075 | Msa0397010:intron | 25.0% |
| ! | ATCAAACAAAAGATGACAAA+GGG | - | chr3_2:15968525-15968544 | Msa0397010:intron | 25.0% |
| ! | ACTTACTAATGTAAATCCAA+AGG | - | chr3_2:15968565-15968584 | Msa0397010:intron | 25.0% |
| !! | TTTTGTAATGAATCTTTTGG+TGG | - | chr3_2:15968644-15968663 | Msa0397010:intron | 25.0% |
| ! | AAAAGTCAATTCATTCTTCA+CGG | + | chr3_2:15968720-15968739 | None:intergenic | 25.0% |
| ! | GTTAAATTTTGCAAGAGAGA+TGG | - | chr3_2:15963254-15963273 | Msa0397010:CDS | 30.0% |
| !!! | TATACTAGTGTTTTGGAGAA+GGG | + | chr3_2:15963323-15963342 | None:intergenic | 30.0% |
| !!! | ATATACTAGTGTTTTGGAGA+AGG | + | chr3_2:15963324-15963343 | None:intergenic | 30.0% |
| ! | ACAAGGATATACTAGTGTTT+TGG | + | chr3_2:15963330-15963349 | None:intergenic | 30.0% |
| ! | AATAATGGAATAACCTGGAA+TGG | + | chr3_2:15963414-15963433 | None:intergenic | 30.0% |
| AAAGTCTCAGCAATAAAATG+TGG | + | chr3_2:15963745-15963764 | None:intergenic | 30.0% | |
| AACATGAGTAAGTGTATGTT+TGG | - | chr3_2:15963808-15963827 | Msa0397010:intron | 30.0% | |
| TAAGTGTATGTTTGGTTATG+CGG | - | chr3_2:15963816-15963835 | Msa0397010:intron | 30.0% | |
| !! | TCTAGCTAAAATTGAGTTGA+AGG | - | chr3_2:15963869-15963888 | Msa0397010:intron | 30.0% |
| TCAAGTATAATCCATTCTAG+AGG | - | chr3_2:15963990-15964009 | Msa0397010:intron | 30.0% | |
| !! | AATTGATTTTGCCTCTAGAA+TGG | + | chr3_2:15964004-15964023 | None:intergenic | 30.0% |
| !!! | TAGACCTCTAGAATCATTTT+TGG | - | chr3_2:15964060-15964079 | Msa0397010:intron | 30.0% |
| ATGTCAAATCGAGAAAACAT+AGG | - | chr3_2:15964202-15964221 | Msa0397010:intron | 30.0% | |
| TTTGTTTGCAGATAATAGCT+CGG | - | chr3_2:15964417-15964436 | Msa0397010:intron | 30.0% | |
| TCTTGTATACCAATCTTTCA+AGG | + | chr3_2:15964544-15964563 | None:intergenic | 30.0% | |
| GATTTGTGTAGAAATTCGAA+AGG | - | chr3_2:15964740-15964759 | Msa0397010:intron | 30.0% | |
| TGTATTTACGAGTCATTATG+TGG | - | chr3_2:15964809-15964828 | Msa0397010:intron | 30.0% | |
| TGATAATTTATTAGGTGAGG+AGG | - | chr3_2:15964834-15964853 | Msa0397010:intron | 30.0% | |
| GATAATTTATTAGGTGAGGA+GGG | - | chr3_2:15964835-15964854 | Msa0397010:intron | 30.0% | |
| !! | AGAAGATTCATCTTTTAGAG+AGG | - | chr3_2:15964939-15964958 | Msa0397010:intron | 30.0% |
| GAAAGCAATAACCAAATGAA+GGG | + | chr3_2:15965228-15965247 | None:intergenic | 30.0% | |
| AGAAAGCAATAACCAAATGA+AGG | + | chr3_2:15965229-15965248 | None:intergenic | 30.0% | |
| ATGTGATGTTATTATAGGCA+TGG | - | chr3_2:15965283-15965302 | Msa0397010:intron | 30.0% | |
| GAAAATGCAATGATGAAAAG+AGG | - | chr3_2:15965362-15965381 | Msa0397010:intron | 30.0% | |
| !!! | AATTTTTTGGACCGTCTTTT+AGG | - | chr3_2:15965385-15965404 | Msa0397010:intron | 30.0% |
| ACACATTAACTAATGCTGAT+AGG | - | chr3_2:15965580-15965599 | Msa0397010:intron | 30.0% | |
| CACATTAACTAATGCTGATA+GGG | - | chr3_2:15965581-15965600 | Msa0397010:intron | 30.0% | |
| CTATCAGAAAGGACTAAAAA+AGG | + | chr3_2:15965846-15965865 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAGTCCTTTCTGAT+AGG | - | chr3_2:15965844-15965863 | Msa0397010:intron | 30.0% |
| ATCCCAATTTGCATTTGATA+GGG | + | chr3_2:15965997-15966016 | None:intergenic | 30.0% | |
| AATCCCAATTTGCATTTGAT+AGG | + | chr3_2:15965998-15966017 | None:intergenic | 30.0% | |
| ATTCTCTCCAGTGTTAATTT+GGG | - | chr3_2:15966311-15966330 | Msa0397010:intron | 30.0% | |
| ATTATACCGCAATCAAGATA+TGG | + | chr3_2:15966558-15966577 | None:intergenic | 30.0% | |
| CTAAACTCGTAAGTATCATT+TGG | + | chr3_2:15966641-15966660 | None:intergenic | 30.0% | |
| !! | GCACATAGAAAATTTTAGCA+CGG | + | chr3_2:15966756-15966775 | None:intergenic | 30.0% |
| ! | GCATTTTACCAAAATTTGGT+TGG | - | chr3_2:15966932-15966951 | Msa0397010:CDS | 30.0% |
| ! | TCATAGAACCAACCAAATTT+TGG | + | chr3_2:15966943-15966962 | None:intergenic | 30.0% |
| !!! | TTTGCTCGATCCTTTTTTAT+GGG | - | chr3_2:15967127-15967146 | Msa0397010:intron | 30.0% |
| AGAATGGAAAAACGATCAAT+CGG | + | chr3_2:15967422-15967441 | None:intergenic | 30.0% | |
| !! | CATTGTTGATTTGTTCAACA+TGG | - | chr3_2:15967460-15967479 | Msa0397010:intron | 30.0% |
| ! | TGATTGCTTCTTTTTAGACA+GGG | + | chr3_2:15967492-15967511 | None:intergenic | 30.0% |
| ! | TTGATTGCTTCTTTTTAGAC+AGG | + | chr3_2:15967493-15967512 | None:intergenic | 30.0% |
| GTATACAACAGAGAATTTAG+TGG | + | chr3_2:15967559-15967578 | None:intergenic | 30.0% | |
| AAAAAGGAGAATGAAAGTCA+AGG | - | chr3_2:15967776-15967795 | Msa0397010:intron | 30.0% | |
| TATTTGTATCCTTGACATGA+GGG | + | chr3_2:15968205-15968224 | None:intergenic | 30.0% | |
| !! | ATAAAATCATCGATTTGCGA+CGG | + | chr3_2:15968245-15968264 | None:intergenic | 30.0% |
| GCTAAGTCATTCCATTTAAT+GGG | - | chr3_2:15968491-15968510 | Msa0397010:intron | 30.0% | |
| CACTTTCATTTCCCATTAAA+TGG | + | chr3_2:15968505-15968524 | None:intergenic | 30.0% | |
| GATCAAACAAAAGATGACAA+AGG | - | chr3_2:15968524-15968543 | Msa0397010:intron | 30.0% | |
| TCAAACAAAAGATGACAAAG+GGG | - | chr3_2:15968526-15968545 | Msa0397010:intron | 30.0% | |
| GCTTAAAAAAGACTATCCTT+TGG | + | chr3_2:15968584-15968603 | None:intergenic | 30.0% | |
| AGATCACAACAACATCTTGA+TGG | - | chr3_2:15962951-15962970 | Msa0397010:CDS | 35.0% | |
| GCGTATAATATGTTGTCGTA+TGG | + | chr3_2:15962980-15962999 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTCTGCAACACA+AGG | + | chr3_2:15963347-15963366 | None:intergenic | 35.0% |
| ! | TCTCAAAGTTTCGTTGATTG+CGG | - | chr3_2:15963764-15963783 | Msa0397010:intron | 35.0% |
| !! | TTTACGTTTGGTTCCACTTT+TGG | + | chr3_2:15964091-15964110 | None:intergenic | 35.0% |
| TTTAGATTGCAAGGATTCGA+TGG | - | chr3_2:15964448-15964467 | Msa0397010:intron | 35.0% | |
| TTAGATTGCAAGGATTCGAT+GGG | - | chr3_2:15964449-15964468 | Msa0397010:intron | 35.0% | |
| CTTCATAAGATGCTGGAAAT+AGG | + | chr3_2:15964591-15964610 | None:intergenic | 35.0% | |
| CTATTTCCAGCATCTTATGA+AGG | - | chr3_2:15964589-15964608 | Msa0397010:intron | 35.0% | |
| TACATACCTTCATAAGATGC+TGG | + | chr3_2:15964598-15964617 | None:intergenic | 35.0% | |
| ACAATGATGTGAGATTGCTT+AGG | - | chr3_2:15964653-15964672 | Msa0397010:intron | 35.0% | |
| GTTATTTATCTGACTGTAGC+TGG | - | chr3_2:15964718-15964737 | Msa0397010:intron | 35.0% | |
| !! | GATTCATCTTTTAGAGAGGT+AGG | - | chr3_2:15964943-15964962 | Msa0397010:intron | 35.0% |
| TTAAACGAAGATAACTGAGG+AGG | - | chr3_2:15965033-15965052 | Msa0397010:intron | 35.0% | |
| ! | AATTACAGTCCTCTGAGAAA+TGG | - | chr3_2:15965154-15965173 | Msa0397010:intron | 35.0% |
| ! | TTTCTAACTTGCCCTTCATT+TGG | - | chr3_2:15965214-15965233 | Msa0397010:intron | 35.0% |
| TGTTTCATGACAGCTTGAAA+AGG | - | chr3_2:15965338-15965357 | Msa0397010:intron | 35.0% | |
| AGAAAGGACTAAAAAAGGAG+GGG | + | chr3_2:15965841-15965860 | None:intergenic | 35.0% | |
| CAGAAAGGACTAAAAAAGGA+GGG | + | chr3_2:15965842-15965861 | None:intergenic | 35.0% | |
| TCAGAAAGGACTAAAAAAGG+AGG | + | chr3_2:15965843-15965862 | None:intergenic | 35.0% | |
| ATTTGCATTTGATAGGGACT+CGG | + | chr3_2:15965991-15966010 | None:intergenic | 35.0% | |
| AGTCCCTATCAAATGCAAAT+TGG | - | chr3_2:15965991-15966010 | Msa0397010:intron | 35.0% | |
| GTCCCTATCAAATGCAAATT+GGG | - | chr3_2:15965992-15966011 | Msa0397010:intron | 35.0% | |
| CTAAGATTGCGATTTATGCA+GGG | + | chr3_2:15966027-15966046 | None:intergenic | 35.0% | |
| ! | TCTAAGATTGCGATTTATGC+AGG | + | chr3_2:15966028-15966047 | None:intergenic | 35.0% |
| GATTCTCTCCAGTGTTAATT+TGG | - | chr3_2:15966310-15966329 | Msa0397010:intron | 35.0% | |
| ATCCTTCTACTAGTATCATG+TGG | - | chr3_2:15966476-15966495 | Msa0397010:CDS | 35.0% | |
| AACCACATGATACTAGTAGA+AGG | + | chr3_2:15966481-15966500 | None:intergenic | 35.0% | |
| TATCATTTGGTAAGATCACC+TGG | + | chr3_2:15966628-15966647 | None:intergenic | 35.0% | |
| ACTTATAACAGAGATGCAGA+AGG | + | chr3_2:15966811-15966830 | None:intergenic | 35.0% | |
| ! | AGGAACTTCAGTTTTCATAC+TGG | - | chr3_2:15966857-15966876 | Msa0397010:CDS | 35.0% |
| TTCAGAATCTCACAACTTTG+AGG | + | chr3_2:15966912-15966931 | None:intergenic | 35.0% | |
| TTGGTTAGAAATTGTTACCG+TGG | - | chr3_2:15967008-15967027 | Msa0397010:intron | 35.0% | |
| AAGCATGCACTAAATGATAC+TGG | + | chr3_2:15967040-15967059 | None:intergenic | 35.0% | |
| !!! | GTTTGCTCGATCCTTTTTTA+TGG | - | chr3_2:15967126-15967145 | Msa0397010:intron | 35.0% |
| CACAGAAAGTCCCATAAAAA+AGG | + | chr3_2:15967140-15967159 | None:intergenic | 35.0% | |
| GAATGGAAAAACGATCAATC+GGG | + | chr3_2:15967421-15967440 | None:intergenic | 35.0% | |
| AATAACTCATGAGGGAATAG+AGG | - | chr3_2:15967517-15967536 | Msa0397010:intron | 35.0% | |
| ! | ACTTGAGAGGAAGCATAAAA+AGG | - | chr3_2:15967760-15967779 | Msa0397010:intron | 35.0% |
| AATCTTTCTGTTCAAGCATC+AGG | - | chr3_2:15967815-15967834 | Msa0397010:intron | 35.0% | |
| ACACTATCGAGTCTATTCTT+GGG | - | chr3_2:15967849-15967868 | Msa0397010:intron | 35.0% | |
| TAACAGAAATGAGCACATCA+TGG | + | chr3_2:15967883-15967902 | None:intergenic | 35.0% | |
| TAATTGGTGCATTGTTCAGT+TGG | - | chr3_2:15968015-15968034 | Msa0397010:intron | 35.0% | |
| ! | GAGAGTTGTCTTGTTAAACA+TGG | - | chr3_2:15968105-15968124 | Msa0397010:intron | 35.0% |
| ATTTGTATCCTTGACATGAG+GGG | + | chr3_2:15968204-15968223 | None:intergenic | 35.0% | |
| GTATTTGTATCCTTGACATG+AGG | + | chr3_2:15968206-15968225 | None:intergenic | 35.0% | |
| !! | TAAAATCATCGATTTGCGAC+GGG | + | chr3_2:15968244-15968263 | None:intergenic | 35.0% |
| ! | GTCGCAAATCGATGATTTTA+TGG | - | chr3_2:15968244-15968263 | Msa0397010:intron | 35.0% |
| ! | GATTTTATGGAGACTGTGTT+TGG | - | chr3_2:15968257-15968276 | Msa0397010:intron | 35.0% |
| GTACTACTTTGTACACATTG+TGG | + | chr3_2:15968446-15968465 | None:intergenic | 35.0% | |
| TGTGTTAACTAGCAATGCTA+AGG | - | chr3_2:15968469-15968488 | Msa0397010:intron | 35.0% | |
| GGCTAAGTCATTCCATTTAA+TGG | - | chr3_2:15968490-15968509 | Msa0397010:intron | 35.0% | |
| !! | AATGAATCTTTTGGTGGTAC+TGG | - | chr3_2:15968650-15968669 | Msa0397010:intron | 35.0% |
| TGCAGAAACCAAAAACTGTC+CGG | - | chr3_2:15963352-15963371 | Msa0397010:intron | 40.0% | |
| ATACTTCAGAGGAACCAAAC+AGG | - | chr3_2:15964024-15964043 | Msa0397010:intron | 40.0% | |
| TACTTCAGAGGAACCAAACA+GGG | - | chr3_2:15964025-15964044 | Msa0397010:intron | 40.0% | |
| GGAGCCAAAAATGATTCTAG+AGG | + | chr3_2:15964067-15964086 | None:intergenic | 40.0% | |
| !!! | ATTTTTGGCTCCTCCAAAAG+TGG | - | chr3_2:15964075-15964094 | Msa0397010:intron | 40.0% |
| AGTGGAACCAAACGTAAACA+TGG | - | chr3_2:15964093-15964112 | Msa0397010:intron | 40.0% | |
| GTGGAACCAAACGTAAACAT+GGG | - | chr3_2:15964094-15964113 | Msa0397010:intron | 40.0% | |
| ACCAAACGTAAACATGGGAA+AGG | - | chr3_2:15964099-15964118 | Msa0397010:intron | 40.0% | |
| ACCTTTCCCATGTTTACGTT+TGG | + | chr3_2:15964103-15964122 | None:intergenic | 40.0% | |
| !! | CATGGGAAAGGTATTTGATG+AGG | - | chr3_2:15964111-15964130 | Msa0397010:intron | 40.0% |
| !! | AAAGGTATTTGATGAGGCGA+GGG | - | chr3_2:15964117-15964136 | Msa0397010:intron | 40.0% |
| CTTTGGCACCGTAAACATAA+GGG | + | chr3_2:15964248-15964267 | None:intergenic | 40.0% | |
| ACTTTGGCACCGTAAACATA+AGG | + | chr3_2:15964249-15964268 | None:intergenic | 40.0% | |
| GCTGTTGGATTTAGATTGCA+AGG | - | chr3_2:15964439-15964458 | Msa0397010:intron | 40.0% | |
| ATTAGGTGAGGAGGGATTTA+AGG | - | chr3_2:15964843-15964862 | Msa0397010:intron | 40.0% | |
| CTGAGTGTCTTACATGTTTG+TGG | - | chr3_2:15965082-15965101 | Msa0397010:intron | 40.0% | |
| ATGCATAGAGCATGACTATG+AGG | - | chr3_2:15965552-15965571 | Msa0397010:intron | 40.0% | |
| AACTAATGCTGATAGGGACT+TGG | - | chr3_2:15965587-15965606 | Msa0397010:intron | 40.0% | |
| ACTAATGCTGATAGGGACTT+GGG | - | chr3_2:15965588-15965607 | Msa0397010:intron | 40.0% | |
| TGATAGGGACTTGGGTATTA+TGG | - | chr3_2:15965596-15965615 | Msa0397010:intron | 40.0% | |
| GATAGGGACTTGGGTATTAT+GGG | - | chr3_2:15965597-15965616 | Msa0397010:intron | 40.0% | |
| ATAGGGACTTGGGTATTATG+GGG | - | chr3_2:15965598-15965617 | Msa0397010:intron | 40.0% | |
| AGTCCCACATTGAGTATTAG+AGG | - | chr3_2:15965627-15965646 | Msa0397010:intron | 40.0% | |
| GTCCCACATTGAGTATTAGA+GGG | - | chr3_2:15965628-15965647 | Msa0397010:intron | 40.0% | |
| CACCCTCTAATACTCAATGT+GGG | + | chr3_2:15965633-15965652 | None:intergenic | 40.0% | |
| ATAGGGACTTGGGAATTATG+GGG | + | chr3_2:15965742-15965761 | None:intergenic | 40.0% | |
| GATAGGGACTTGGGAATTAT+GGG | + | chr3_2:15965743-15965762 | None:intergenic | 40.0% | |
| TGATAGGGACTTGGGAATTA+TGG | + | chr3_2:15965744-15965763 | None:intergenic | 40.0% | |
| AATTGTTAAGTACAGCCGTC+GGG | + | chr3_2:15965795-15965814 | None:intergenic | 40.0% | |
| GAATTGTTAAGTACAGCCGT+CGG | + | chr3_2:15965796-15965815 | None:intergenic | 40.0% | |
| TGCTTGGATACCTATCAGAA+AGG | + | chr3_2:15965857-15965876 | None:intergenic | 40.0% | |
| ! | TGCTTGGTGGAGTATTTAAG+TGG | + | chr3_2:15965927-15965946 | None:intergenic | 40.0% |
| ATCATGTAGTATGGGATGCT+TGG | + | chr3_2:15965943-15965962 | None:intergenic | 40.0% | |
| CATCCCATACTACATGATGT+GGG | - | chr3_2:15965945-15965964 | Msa0397010:intron | 40.0% | |
| AGTCCCACATCATGTAGTAT+GGG | + | chr3_2:15965951-15965970 | None:intergenic | 40.0% | |
| AAGTCCCACATCATGTAGTA+TGG | + | chr3_2:15965952-15965971 | None:intergenic | 40.0% | |
| ATACTACATGATGTGGGACT+TGG | - | chr3_2:15965951-15965970 | Msa0397010:intron | 40.0% | |
| TTTGCATTTGATAGGGACTC+GGG | + | chr3_2:15965990-15966009 | None:intergenic | 40.0% | |
| TTCCTGATGGGAACAGTTAT+TGG | + | chr3_2:15966135-15966154 | None:intergenic | 40.0% | |
| TTCCCATCAGGAATCATACT+CGG | - | chr3_2:15966142-15966161 | Msa0397010:intron | 40.0% | |
| TGGTTAATGAGCTCCTCTTA+TGG | + | chr3_2:15966186-15966205 | None:intergenic | 40.0% | |
| TCATTAACCACTTGGGATCT+AGG | - | chr3_2:15966258-15966277 | Msa0397010:intron | 40.0% | |
| ! | TCTCCAGTGTTAATTTGGGT+GGG | - | chr3_2:15966315-15966334 | Msa0397010:intron | 40.0% |
| ! | ATTGGTTCAACCATCTGCAT+GGG | + | chr3_2:15966439-15966458 | None:intergenic | 40.0% |
| ! | TTGCTCTGGGTTTAGTTGAT+TGG | - | chr3_2:15966532-15966551 | Msa0397010:CDS | 40.0% |
| ! | GATTGGCCATATCTTGATTG+CGG | - | chr3_2:15966549-15966568 | Msa0397010:CDS | 40.0% |
| TCTTTGTTGAAATAGGGAGC+AGG | - | chr3_2:15966837-15966856 | Msa0397010:CDS | 40.0% | |
| ! | CTGGATAACCTCAGTTTTTC+TGG | - | chr3_2:15966876-15966895 | Msa0397010:CDS | 40.0% |
| GGGACTTTCTGTGACAATTA+TGG | - | chr3_2:15967147-15967166 | Msa0397010:intron | 40.0% | |
| !! | AGGGAATAGAGGTTAGTTTG+TGG | - | chr3_2:15967528-15967547 | Msa0397010:intron | 40.0% |
| !! | GGGAATAGAGGTTAGTTTGT+GGG | - | chr3_2:15967529-15967548 | Msa0397010:intron | 40.0% |
| AATCATCGTCATCACTAGCA+GGG | + | chr3_2:15967697-15967716 | None:intergenic | 40.0% | |
| TAATCATCGTCATCACTAGC+AGG | + | chr3_2:15967698-15967717 | None:intergenic | 40.0% | |
| ACGTTACATTAGAGTGTGTC+TGG | - | chr3_2:15967717-15967736 | Msa0397010:intron | 40.0% | |
| GACACTATCGAGTCTATTCT+TGG | - | chr3_2:15967848-15967867 | Msa0397010:intron | 40.0% | |
| CACTATCGAGTCTATTCTTG+GGG | - | chr3_2:15967850-15967869 | Msa0397010:intron | 40.0% | |
| ACTATCGAGTCTATTCTTGG+GGG | - | chr3_2:15967851-15967870 | Msa0397010:intron | 40.0% | |
| AACAAGTAACAACTGCCCTT+AGG | - | chr3_2:15967956-15967975 | Msa0397010:intron | 40.0% | |
| ACAAGTAACAACTGCCCTTA+GGG | - | chr3_2:15967957-15967976 | Msa0397010:intron | 40.0% | |
| ! | CTTTTTATCCAGTGCCCTAA+GGG | + | chr3_2:15967974-15967993 | None:intergenic | 40.0% |
| ! | ACTTTTTATCCAGTGCCCTA+AGG | + | chr3_2:15967975-15967994 | None:intergenic | 40.0% |
| TTTGTATCCTTGACATGAGG+GGG | + | chr3_2:15968203-15968222 | None:intergenic | 40.0% | |
| GCATTATCACAGTCTTCAAC+CGG | - | chr3_2:15968356-15968375 | Msa0397010:intron | 40.0% | |
| ATGCCACATAACACGTTGTG+CGG | - | chr3_2:15963058-15963077 | Msa0397010:CDS | 45.0% | |
| !!! | CTAGTGTTTTGGAGAAGGGT+AGG | + | chr3_2:15963319-15963338 | None:intergenic | 45.0% |
| ! | TGCGTTTTCCGGACAGTTTT+TGG | + | chr3_2:15963363-15963382 | None:intergenic | 45.0% |
| AGAGTTGAGTTTGCCCTGTT+TGG | + | chr3_2:15964041-15964060 | None:intergenic | 45.0% | |
| !! | ACGTTTGGTTCCACTTTTGG+AGG | + | chr3_2:15964088-15964107 | None:intergenic | 45.0% |
| !! | GAAAGGTATTTGATGAGGCG+AGG | - | chr3_2:15964116-15964135 | Msa0397010:intron | 45.0% |
| ! | AAGGTATTTGATGAGGCGAG+GGG | - | chr3_2:15964118-15964137 | Msa0397010:intron | 45.0% |
| GTGTGGCATCCTTGAAAGAT+TGG | - | chr3_2:15964532-15964551 | Msa0397010:intron | 45.0% | |
| GATGCTGGAAATAGGAACAG+CGG | + | chr3_2:15964583-15964602 | None:intergenic | 45.0% | |
| ! | GGATTTAAGGCTTCTGCAGT+TGG | - | chr3_2:15964856-15964875 | Msa0397010:intron | 45.0% |
| GTCGTGCAGATCCTAAAAGA+CGG | + | chr3_2:15965399-15965418 | None:intergenic | 45.0% | |
| ATCTGCACGACTACTAGAAG+AGG | - | chr3_2:15965408-15965427 | Msa0397010:intron | 45.0% | |
| TCATTGTGTTTCGACTGTGC+TGG | - | chr3_2:15965506-15965525 | Msa0397010:intron | 45.0% | |
| GCACCCTCTAATACTCAATG+TGG | + | chr3_2:15965634-15965653 | None:intergenic | 45.0% | |
| !! | TGCTCGATGGAGTTTTGATG+TGG | + | chr3_2:15965689-15965708 | None:intergenic | 45.0% |
| AAGTAGAATGGGATGCTCGA+TGG | + | chr3_2:15965702-15965721 | None:intergenic | 45.0% | |
| GCATCCCATTCTACTTGATG+CGG | - | chr3_2:15965706-15965725 | Msa0397010:intron | 45.0% | |
| CATCCCATTCTACTTGATGC+GGG | - | chr3_2:15965707-15965726 | Msa0397010:intron | 45.0% | |
| AGTCCCGCATCAAGTAGAAT+GGG | + | chr3_2:15965713-15965732 | None:intergenic | 45.0% | |
| AAGTCCCGCATCAAGTAGAA+TGG | + | chr3_2:15965714-15965733 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTGATAGGGACTT+GGG | + | chr3_2:15965752-15965771 | None:intergenic | 45.0% |
| AAAGGAGGGGATGACTAGAA+AGG | + | chr3_2:15965828-15965847 | None:intergenic | 45.0% | |
| ! | CCTCGATAGCTAGCTTCAAA+GGG | + | chr3_2:15965891-15965910 | None:intergenic | 45.0% |
| !! | CCTTTGAAGCTAGCTATCGA+GGG | - | chr3_2:15965889-15965908 | Msa0397010:intron | 45.0% |
| !! | CTTTGAAGCTAGCTATCGAG+GGG | - | chr3_2:15965890-15965909 | Msa0397010:intron | 45.0% |
| ! | TTTGAAGCTAGCTATCGAGG+GGG | - | chr3_2:15965891-15965910 | Msa0397010:intron | 45.0% |
| ATGTAGTATGGGATGCTTGG+TGG | + | chr3_2:15965940-15965959 | None:intergenic | 45.0% | |
| GCATCCCATACTACATGATG+TGG | - | chr3_2:15965944-15965963 | Msa0397010:intron | 45.0% | |
| ATAGGGACTCGGGTATTATG+TGG | + | chr3_2:15965980-15965999 | None:intergenic | 45.0% | |
| TGTTAACCCTCCCGTACATA+GGG | - | chr3_2:15966058-15966077 | Msa0397010:intron | 45.0% | |
| TCCCATCAGGAATCATACTC+GGG | - | chr3_2:15966143-15966162 | Msa0397010:intron | 45.0% | |
| ACCCGAGTATGATTCCTGAT+GGG | + | chr3_2:15966147-15966166 | None:intergenic | 45.0% | |
| AACCCGAGTATGATTCCTGA+TGG | + | chr3_2:15966148-15966167 | None:intergenic | 45.0% | |
| CCTCTTATGACGAATCGTTC+AGG | + | chr3_2:15966173-15966192 | None:intergenic | 45.0% | |
| CCTGAACGATTCGTCATAAG+AGG | - | chr3_2:15966170-15966189 | Msa0397010:intron | 45.0% | |
| AACAAGTGATTGGGCTCAAG+TGG | + | chr3_2:15966206-15966225 | None:intergenic | 45.0% | |
| AGAGGAGCTCATTAACCACT+TGG | - | chr3_2:15966188-15966207 | Msa0397010:intron | 45.0% | |
| GAGGAGCTCATTAACCACTT+GGG | - | chr3_2:15966189-15966208 | Msa0397010:intron | 45.0% | |
| ! | CTCTCCAGTGTTAATTTGGG+TGG | - | chr3_2:15966314-15966333 | Msa0397010:intron | 45.0% |
| TAGCCCACCCAAATTAACAC+TGG | + | chr3_2:15966321-15966340 | None:intergenic | 45.0% | |
| ! | GTTCTGTTTTCCCATGCAGA+TGG | - | chr3_2:15966426-15966445 | Msa0397010:intron | 45.0% |
| !! | CATTGGTTCAACCATCTGCA+TGG | + | chr3_2:15966440-15966459 | None:intergenic | 45.0% |
| GATGGTTGAACCAATGCTGA+AGG | - | chr3_2:15966444-15966463 | Msa0397010:intron | 45.0% | |
| AATGATACTGGAGCTGACCA+CGG | + | chr3_2:15967028-15967047 | None:intergenic | 45.0% | |
| AATGTGGTACACTGATGCTG+AGG | - | chr3_2:15967284-15967303 | Msa0397010:intron | 45.0% | |
| GGAGAATGAAAGTCAAGGTG+AGG | - | chr3_2:15967781-15967800 | Msa0397010:intron | 45.0% | |
| TGGTGAAGATTCATGGAGAG+AGG | + | chr3_2:15968321-15968340 | None:intergenic | 45.0% | |
| TCTCCATGAATCTTCACCAG+AGG | - | chr3_2:15968322-15968341 | Msa0397010:intron | 45.0% | |
| CTCCATGAATCTTCACCAGA+GGG | - | chr3_2:15968323-15968342 | Msa0397010:intron | 45.0% | |
| TATCACAGTCTTCAACCGGT+AGG | - | chr3_2:15968360-15968379 | Msa0397010:intron | 45.0% | |
| AAATGCCACCTTCTTCGAAC+CGG | + | chr3_2:15968396-15968415 | None:intergenic | 45.0% | |
| ACACATTGTGGCACTAACGT+AGG | + | chr3_2:15968434-15968453 | None:intergenic | 45.0% | |
| !! | TTTGGTGGTACTGGTACAGT+AGG | - | chr3_2:15968659-15968678 | Msa0397010:intron | 45.0% |
| TGCCACATAACACGTTGTGC+GGG | - | chr3_2:15963059-15963078 | Msa0397010:CDS | 50.0% | |
| AATGGATGAACCAACTCCGC+CGG | + | chr3_2:15963396-15963415 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTTCATCCATTCC+AGG | - | chr3_2:15963398-15963417 | Msa0397010:intron | 50.0% |
| GGACGACAATGAGTCAGGAT+GGG | + | chr3_2:15964163-15964182 | None:intergenic | 50.0% | |
| ACTAGGGACGACAATGAGTC+AGG | + | chr3_2:15964168-15964187 | None:intergenic | 50.0% | |
| GCAGATAATAGCTCGGCTGT+TGG | - | chr3_2:15964424-15964443 | Msa0397010:intron | 50.0% | |
| TCACAGCTCCAATGTGAGTG+TGG | - | chr3_2:15964515-15964534 | Msa0397010:intron | 50.0% | |
| CAAGGATGCCACACTCACAT+TGG | + | chr3_2:15964526-15964545 | None:intergenic | 50.0% | |
| GCTTCTGCAGTTGGCAAACT+TGG | - | chr3_2:15964865-15964884 | Msa0397010:intron | 50.0% | |
| TCTGCAGTTGGCAAACTTGG+AGG | - | chr3_2:15964868-15964887 | Msa0397010:intron | 50.0% | |
| ! | GTGGTTCTGTGATAGGGACT+TGG | + | chr3_2:15965753-15965772 | None:intergenic | 50.0% |
| TCCCTATCACAGAACCACCT+CGG | - | chr3_2:15965755-15965774 | Msa0397010:intron | 50.0% | |
| ! | TCCGAGGTGGTTCTGTGATA+GGG | + | chr3_2:15965759-15965778 | None:intergenic | 50.0% |
| ! | TTCCGAGGTGGTTCTGTGAT+AGG | + | chr3_2:15965760-15965779 | None:intergenic | 50.0% |
| TATCACAGAACCACCTCGGA+AGG | - | chr3_2:15965759-15965778 | Msa0397010:intron | 50.0% | |
| AGGGGATGACTAGAAAGGTC+AGG | + | chr3_2:15965823-15965842 | None:intergenic | 50.0% | |
| ! | CGATAGCTAGCTTCAAAGGG+AGG | + | chr3_2:15965888-15965907 | None:intergenic | 50.0% |
| !! | CCCTTTGAAGCTAGCTATCG+AGG | - | chr3_2:15965888-15965907 | Msa0397010:intron | 50.0% |
| ! | CCCTCGATAGCTAGCTTCAA+AGG | + | chr3_2:15965892-15965911 | None:intergenic | 50.0% |
| GTGTTAACCCTCCCGTACAT+AGG | - | chr3_2:15966057-15966076 | Msa0397010:intron | 50.0% | |
| GTTAACCCTCCCGTACATAG+GGG | - | chr3_2:15966059-15966078 | Msa0397010:intron | 50.0% | |
| AGCCGAACTCCGGATTACTA+GGG | + | chr3_2:15966092-15966111 | None:intergenic | 50.0% | |
| GCTGGCAGGTAAGTAAAGTC+TGG | - | chr3_2:15966109-15966128 | Msa0397010:intron | 50.0% | |
| GGCCAATAACTGTTCCCATC+AGG | - | chr3_2:15966130-15966149 | Msa0397010:intron | 50.0% | |
| GAATCGAACATGAGACCTCG+AGG | + | chr3_2:15966295-15966314 | None:intergenic | 50.0% | |
| TACGTTGCAGCCTTCAGCAT+TGG | + | chr3_2:15966457-15966476 | None:intergenic | 50.0% | |
| ! | GCTAGCACGTCTACGAGTTT+TGG | - | chr3_2:15967174-15967193 | Msa0397010:intron | 50.0% |
| GAAAGTCAAGGTGAGGACTC+TGG | - | chr3_2:15967788-15967807 | Msa0397010:intron | 50.0% | |
| TGCAGATGACCAACATGACC+CGG | - | chr3_2:15968142-15968161 | Msa0397010:intron | 50.0% | |
| CATCTGCTTCACCTGTTTCC+GGG | + | chr3_2:15968163-15968182 | None:intergenic | 50.0% | |
| GCATCTGCTTCACCTGTTTC+CGG | + | chr3_2:15968164-15968183 | None:intergenic | 50.0% | |
| AGCAGATGCTGCAGCTAAAG+AGG | - | chr3_2:15968175-15968194 | Msa0397010:intron | 50.0% | |
| !! | ACTGTGTTTGGTAGCGAGGA+AGG | - | chr3_2:15968269-15968288 | Msa0397010:intron | 50.0% |
| CACCCTCTGGTGAAGATTCA+TGG | + | chr3_2:15968328-15968347 | None:intergenic | 50.0% | |
| AATGCATGCAAGTCACCCTC+TGG | + | chr3_2:15968341-15968360 | None:intergenic | 50.0% | |
| ACCGGTAGGAAACTCCATTC+CGG | - | chr3_2:15968374-15968393 | Msa0397010:intron | 50.0% | |
| ACCGGAATGGAGTTTCCTAC+CGG | + | chr3_2:15968378-15968397 | None:intergenic | 50.0% | |
| ! | ACTCCATTCCGGTTCGAAGA+AGG | - | chr3_2:15968385-15968404 | Msa0397010:intron | 50.0% |
| GACCCGCACAACGTGTTATG+TGG | + | chr3_2:15963064-15963083 | None:intergenic | 55.0% | |
| ! | GCAAGTCTGCGTGCGTTTTC+CGG | + | chr3_2:15963374-15963393 | None:intergenic | 55.0% |
| GAAAACGCACGCAGACTTGC+CGG | - | chr3_2:15963374-15963393 | Msa0397010:intron | 55.0% | |
| GGGACGACAATGAGTCAGGA+TGG | + | chr3_2:15964164-15964183 | None:intergenic | 55.0% | |
| GCTGGAAATAGGAACAGCGG+CGG | + | chr3_2:15964580-15964599 | None:intergenic | 55.0% | |
| GAGAGCGAGCCATTTCTCAG+AGG | + | chr3_2:15965166-15965185 | None:intergenic | 55.0% | |
| TGCTCGACAGCTCAAGCGTT+TGG | - | chr3_2:15965651-15965670 | Msa0397010:intron | 55.0% | |
| GCTCGACAGCTCAAGCGTTT+GGG | - | chr3_2:15965652-15965671 | Msa0397010:intron | 55.0% | |
| CTCGACAGCTCAAGCGTTTG+GGG | - | chr3_2:15965653-15965672 | Msa0397010:intron | 55.0% | |
| ! | AAGGGAGGTCTCGAAGTGCT+TGG | + | chr3_2:15965873-15965892 | None:intergenic | 55.0% |
| GCCCCTAGTAATCCGGAGTT+CGG | - | chr3_2:15966087-15966106 | Msa0397010:intron | 55.0% | |
| GCCGAACTCCGGATTACTAG+GGG | + | chr3_2:15966091-15966110 | None:intergenic | 55.0% | |
| CAGCCGAACTCCGGATTACT+AGG | + | chr3_2:15966093-15966112 | None:intergenic | 55.0% | |
| CTAGTAATCCGGAGTTCGGC+TGG | - | chr3_2:15966091-15966110 | Msa0397010:intron | 55.0% | |
| GCACACTCCTAGATCCCAAG+TGG | + | chr3_2:15966268-15966287 | None:intergenic | 55.0% | |
| TCGAACATGAGACCTCGAGG+AGG | + | chr3_2:15966292-15966311 | None:intergenic | 55.0% | |
| AGTCAAGGTGAGGACTCTGG+TGG | - | chr3_2:15967791-15967810 | Msa0397010:intron | 55.0% | |
| AACAACTGCCCTTAGGGCAC+TGG | - | chr3_2:15967963-15967982 | Msa0397010:intron | 55.0% | |
| GACCAACATGACCCGGAAAC+AGG | - | chr3_2:15968149-15968168 | Msa0397010:intron | 55.0% | |
| CACCTGTTTCCGGGTCATGT+TGG | + | chr3_2:15968154-15968173 | None:intergenic | 55.0% | |
| AGAGGATCCCCCTCATGTCA+AGG | - | chr3_2:15968193-15968212 | Msa0397010:intron | 55.0% | |
| !! | GGAGACTGTGTTTGGTAGCG+AGG | - | chr3_2:15968265-15968284 | Msa0397010:intron | 55.0% |
| !! | GTGTTTGGTAGCGAGGAAGG+AGG | - | chr3_2:15968272-15968291 | Msa0397010:intron | 55.0% |
| CCACCTTCTTCGAACCGGAA+TGG | + | chr3_2:15968391-15968410 | None:intergenic | 55.0% | |
| ! | CCATTCCGGTTCGAAGAAGG+TGG | - | chr3_2:15968388-15968407 | Msa0397010:intron | 55.0% |
| AACACGTTGTGCGGGTCGTG+TGG | - | chr3_2:15963067-15963086 | Msa0397010:CDS | 60.0% | |
| AATAGGAACAGCGGCGGTGC+TGG | + | chr3_2:15964574-15964593 | None:intergenic | 60.0% | |
| TACAGCCGTCGGGACGACAT+CGG | + | chr3_2:15965785-15965804 | None:intergenic | 60.0% | |
| ACCCTCCCGTACATAGGGGA+AGG | - | chr3_2:15966063-15966082 | Msa0397010:intron | 60.0% | |
| CCCTTCCCCTATGTACGGGA+GGG | + | chr3_2:15966067-15966086 | None:intergenic | 60.0% | |
| CCCTCCCGTACATAGGGGAA+GGG | - | chr3_2:15966064-15966083 | Msa0397010:intron | 60.0% | |
| CCTCCCGTACATAGGGGAAG+GGG | - | chr3_2:15966065-15966084 | Msa0397010:intron | 60.0% | |
| GGAAGGGGCCCCTAGTAATC+CGG | - | chr3_2:15966080-15966099 | Msa0397010:intron | 60.0% | |
| TAATCCGGAGTTCGGCTGGC+AGG | - | chr3_2:15966095-15966114 | Msa0397010:intron | 60.0% | |
| CTTACCTGCCAGCCGAACTC+CGG | + | chr3_2:15966102-15966121 | None:intergenic | 60.0% | |
| ! | TAGGAGTGTGCTCCTCCTCG+AGG | - | chr3_2:15966277-15966296 | Msa0397010:intron | 60.0% |
| AACGCACGCAGACTTGCCGG+CGG | - | chr3_2:15963377-15963396 | Msa0397010:intron | 65.0% | |
| ACGACATCGGCCTTCCGAGG+TGG | + | chr3_2:15965772-15965791 | None:intergenic | 65.0% | |
| GAAGGCCGATGTCGTCCCGA+CGG | - | chr3_2:15965777-15965796 | Msa0397010:intron | 65.0% | |
| CCCCTTCCCCTATGTACGGG+AGG | + | chr3_2:15966068-15966087 | None:intergenic | 65.0% | |
| GGGCCCCTTCCCCTATGTAC+GGG | + | chr3_2:15966071-15966090 | None:intergenic | 65.0% | |
| GGGGCCCCTTCCCCTATGTA+CGG | + | chr3_2:15966072-15966091 | None:intergenic | 65.0% | |
| CGCAGACTTGCCGGCGGAGT+TGG | - | chr3_2:15963383-15963402 | Msa0397010:intron | 70.0% | |
| GGGACGACATCGGCCTTCCG+AGG | + | chr3_2:15965775-15965794 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15962678 | 15968748 | 15962678 | ID=Msa0397010;Name=Msa0397010 |
| chr3_2 | mRNA | 15962678 | 15968748 | 15962678 | ID=Msa0397010-mRNA-1;Parent=Msa0397010;Name=Msa0397010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.87|0.88|0.88|1|1|9|147|417 |
| chr3_2 | exon | 15962678 | 15963279 | 15962678 | ID=Msa0397010-mRNA-1:exon:3600;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15963554 | 15963749 | 15963554 | ID=Msa0397010-mRNA-1:exon:3599;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15963888 | 15963977 | 15963888 | ID=Msa0397010-mRNA-1:exon:3598;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15964222 | 15964315 | 15964222 | ID=Msa0397010-mRNA-1:exon:3597;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15964953 | 15964981 | 15964953 | ID=Msa0397010-mRNA-1:exon:3596;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15965997 | 15966075 | 15965997 | ID=Msa0397010-mRNA-1:exon:3595;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15966466 | 15966578 | 15966466 | ID=Msa0397010-mRNA-1:exon:3594;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15966816 | 15966998 | 15966816 | ID=Msa0397010-mRNA-1:exon:3593;Parent=Msa0397010-mRNA-1 |
| chr3_2 | exon | 15968734 | 15968748 | 15968734 | ID=Msa0397010-mRNA-1:exon:3592;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15968734 | 15968748 | 15968734 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15966816 | 15966998 | 15966816 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15966466 | 15966578 | 15966466 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15965997 | 15966075 | 15965997 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15964953 | 15964981 | 15964953 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15964222 | 15964315 | 15964222 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15963888 | 15963977 | 15963888 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15963554 | 15963749 | 15963554 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | CDS | 15962825 | 15963279 | 15962825 | ID=Msa0397010-mRNA-1:cds;Parent=Msa0397010-mRNA-1 |
| chr3_2 | three_prime_UTR | 15962678 | 15962824 | 15962678 | ID=Msa0397010-mRNA-1:three_prime_utr;Parent=Msa0397010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
