AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0397020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397020 MtrunA17_Chr3g0084371 96.751 831 27 0 2 832 3 833 0.0 1622
Msa0397020 MtrunA17_Chr8g0346441 34.187 664 421 7 183 832 345 1006 1.87e-102 340
Msa0397020 MtrunA17_Chr7g0275961 32.283 635 413 7 212 832 370 1001 6.95e-89 303
Msa0397020 MtrunA17_Chr3g0144071 27.854 657 418 18 221 832 165 810 5.47e-49 186
Msa0397020 MtrunA17_Chr1g0188041 27.911 627 399 18 230 823 392 998 2.44e-48 185
Msa0397020 MtrunA17_Chr3g0106931 32.258 155 101 1 296 450 593 743 2.99e-12 70.5
Msa0397020 MtrunA17_Chr7g0261371 28.495 186 130 2 245 428 502 686 1.66e-11 68.2
Msa0397020 MtrunA17_Chr1g0205751 28.796 191 122 6 237 419 220 404 2.51e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397020 AT1G20780.1 27.948 687 456 19 183 832 113 797 1.86e-45 176
Msa0397020 AT1G20780.2 27.948 687 456 19 183 832 113 797 1.86e-45 176
Msa0397020 AT1G20780.3 27.948 687 456 19 183 832 113 797 1.86e-45 176
Msa0397020 AT1G76390.1 28.331 653 418 18 223 832 162 807 1.53e-44 173
Msa0397020 AT1G76390.2 28.331 653 418 18 223 832 162 807 1.53e-44 173
Msa0397020 AT1G68940.1 25.140 712 458 22 183 832 387 1085 1.42e-37 152
Msa0397020 AT1G68940.2 25.994 654 423 20 183 783 387 1032 5.29e-37 150
Msa0397020 AT1G68940.3 25.994 654 423 20 183 783 334 979 5.89e-37 150
Msa0397020 AT3G01400.1 28.512 242 133 6 220 446 50 266 2.84e-12 69.7
Msa0397020 AT2G23140.1 32.903 155 100 1 296 450 586 736 3.84e-12 70.9
Msa0397020 AT2G23140.2 32.903 155 100 1 296 450 583 733 4.21e-12 70.5
Msa0397020 AT2G23140.4 32.903 155 100 1 296 450 583 733 4.21e-12 70.5
Msa0397020 AT2G23140.3 32.903 155 100 1 296 450 394 544 7.70e-12 69.3
Msa0397020 AT2G23140.5 32.903 155 100 1 296 450 394 544 7.70e-12 69.3
Msa0397020 AT3G46510.1 29.048 210 145 3 267 474 365 572 3.62e-11 67.4

Find 158 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTGCAAGATGAAATT+TGG 0.045920 3_2:+15979459 Msa0397020:CDS
TCTCTTTATCTTCCAATATT+TGG 0.092216 3_2:-15979400 None:intergenic
ATGTCCTCAATTTGCTTAAT+AGG 0.119277 3_2:-15976487 None:intergenic
AGTAGATGACCTTGAATTAT+AGG 0.201690 3_2:-15978669 None:intergenic
ACATGATGCGGCAAAGTTAT+TGG 0.208118 3_2:+15977521 Msa0397020:CDS
ACTTCTTAGCAATTGAATTA+TGG 0.217153 3_2:-15976902 None:intergenic
CTCAAAATTCACTTTCTCTT+AGG 0.225899 3_2:+15979249 Msa0397020:CDS
CAAGATGAAATTTGGGAAAA+TGG 0.257233 3_2:+15979467 Msa0397020:CDS
AATTTCATTGGGAAATTATC+AGG 0.260332 3_2:+15979494 Msa0397020:CDS
CTTGTCAAAATGTTTATTAC+TGG 0.264986 3_2:+15978396 Msa0397020:CDS
TTGCTAAGAAGTATTGCTTT+TGG 0.266379 3_2:+15976913 Msa0397020:CDS
CATTCATTTATGTGCATGTT+TGG 0.270562 3_2:+15979805 Msa0397020:three_prime_UTR
CTCTATGAGAATGAATATTA+TGG 0.277262 3_2:+15979760 Msa0397020:three_prime_UTR
TAGCTTCAAAGTTTCTTTGC+AGG 0.278636 3_2:+15975556 Msa0397020:five_prime_UTR
TCCACGACTTATCCAAATAT+TGG 0.280183 3_2:+15979388 Msa0397020:CDS
GTTAATGAGAAGCGGAAAAT+TGG 0.282538 3_2:+15976798 Msa0397020:CDS
TCAAGTGGTTCTTATTGATT+TGG 0.300541 3_2:+15979637 Msa0397020:CDS
ACAGTGAACGGTCATAATTT+TGG 0.303038 3_2:+15979852 Msa0397020:three_prime_UTR
GCTTTCAACGCTGAAAGTTT+TGG 0.309458 3_2:+15976249 Msa0397020:CDS
GATGTTGGAGAAAATATTTA+AGG 0.323077 3_2:+15979580 Msa0397020:CDS
GTAGATGACCTTGAATTATA+GGG 0.329597 3_2:-15978668 None:intergenic
ATGTTGGTCGCCATCCTTAA+TGG 0.346614 3_2:+15977480 Msa0397020:CDS
GAAGAACATAGAGTGAAATA+TGG 0.348558 3_2:+15979605 Msa0397020:CDS
TCTCTTGCAAGATGAAATTT+GGG 0.351691 3_2:+15979460 Msa0397020:CDS
TTAATTCGATCAGGAATTAC+AGG 0.355500 3_2:+15978492 Msa0397020:CDS
ATTTGCCCTCTTGAGTATAT+CGG 0.356410 3_2:-15978994 None:intergenic
TGGCTGAGGCTGGTTACTTT+AGG 0.356935 3_2:+15977580 Msa0397020:CDS
TGGTGATTTACTAGCATTGC+TGG 0.357671 3_2:-15979048 None:intergenic
TTTCAAAGTTCAACTATGTT+TGG 0.357736 3_2:+15975501 Msa0397020:five_prime_UTR
GTTTGGATTGACGGTTAGTT+TGG 0.358969 3_2:+15979822 Msa0397020:three_prime_UTR
GCTATGTAGCATTAAATATA+AGG 0.359678 3_2:-15975289 None:intergenic
ATGACTTTCATCAAGATATT+CGG 0.361296 3_2:-15978868 None:intergenic
CATCTGTGCTCATGACTCTA+AGG 0.366220 3_2:+15978544 Msa0397020:CDS
TGTCCTCAATTTGCTTAATA+GGG 0.368485 3_2:-15976486 None:intergenic
GCCGCATCATGTGAAGCAAC+TGG 0.369360 3_2:-15977510 None:intergenic
GAAAATGGTGTGAATTTCAT+TGG 0.377699 3_2:+15979482 Msa0397020:CDS
ATGAGTGAAACGAGGATGAT+TGG 0.379821 3_2:+15976670 Msa0397020:CDS
AGTTCAACTATGTTTGGTCT+TGG 0.383090 3_2:+15975507 Msa0397020:five_prime_UTR
CAACTGGGTCATCACCATTA+AGG 0.387852 3_2:-15977494 None:intergenic
GAGGACATGACGCATGATAT+CGG 0.392793 3_2:+15976502 Msa0397020:CDS
CAAGTATATTATTATAAATA+TGG 0.393637 3_2:-15980081 None:intergenic
TCACTCAATTCATTCAAGAT+TGG 0.396017 3_2:-15976358 None:intergenic
TCGATTAAGCTGTTTGTTGA+TGG 0.397566 3_2:-15979068 None:intergenic
GAAAATCAATAGACACTTCA+AGG 0.397793 3_2:-15976555 None:intergenic
CAAGAAACTACAACTTGTTT+CGG 0.404230 3_2:+15979133 Msa0397020:CDS
GTTGTAAATGTAATGACATA+TGG 0.409306 3_2:-15975267 None:intergenic
CTTTCAAGCCCTATAATTCA+AGG 0.411340 3_2:+15978660 Msa0397020:CDS
TAATCAAAATGCACTTCATA+TGG 0.415025 3_2:+15977560 Msa0397020:CDS
CATGATATCGGCCGGTCGTT+GGG 0.416160 3_2:+15976514 Msa0397020:CDS
TATGTAATAATTTATTAGAA+AGG 0.417184 3_2:+15980031 Msa0397020:three_prime_UTR
TAATGGCGACAGCACTTTCT+CGG 0.425418 3_2:+15978316 Msa0397020:CDS
AACATCTTCGTTGACGAGAA+TGG 0.425517 3_2:-15978610 None:intergenic
CCGATCCGCCTTCGAACTGC+TGG 0.426866 3_2:-15977435 None:intergenic
TCACAATATGCATTCATTGA+AGG 0.427699 3_2:-15979305 None:intergenic
TATGTGCATGTTTGGATTGA+CGG 0.431821 3_2:+15979813 Msa0397020:three_prime_UTR
GAGAAAGTGCTGTCGCCATT+AGG 0.433436 3_2:-15978314 None:intergenic
AATAGCATGTCTTCTCATCT+TGG 0.449387 3_2:+15978702 Msa0397020:CDS
AATTATTACATACACTAGAA+TGG 0.449720 3_2:-15980020 None:intergenic
GAGTGATAACAGCGTTGTAT+TGG 0.453271 3_2:+15976375 Msa0397020:CDS
GCATGATATCGGCCGGTCGT+TGG 0.454254 3_2:+15976513 Msa0397020:CDS
ATAAAGACAACATGGAAAAG+AGG 0.455414 3_2:+15976212 Msa0397020:CDS
CAGGCGTCTAGTTTCATGTA+AGG 0.455939 3_2:+15976864 Msa0397020:CDS
AGGAAAATAACATCAAAATC+AGG 0.456937 3_2:+15978790 Msa0397020:CDS
TAATAATTTATTAGAAAGGA+AGG 0.458514 3_2:+15980035 Msa0397020:three_prime_UTR
CAAGAAGAGTATAGAAAGAA+AGG 0.460390 3_2:-15975348 None:intergenic
TAACATCAAAATCAGGTGTA+AGG 0.461132 3_2:+15978797 Msa0397020:CDS
TTGTCAAAATGTTTATTACT+GGG 0.464608 3_2:+15978397 Msa0397020:CDS
TGACATGAACAAAATCCTAA+TGG 0.469139 3_2:+15978299 Msa0397020:CDS
AAGCACAAGGGTGAAACATA+AGG 0.476052 3_2:-15975401 None:intergenic
CTCAATTCATTCAAGATTGG+TGG 0.479413 3_2:-15976355 None:intergenic
TGGATTGACGGTTAGTTTGG+CGG 0.481683 3_2:+15979825 Msa0397020:three_prime_UTR
ATCAAGGGCTGCAAACTCCT+TGG 0.481743 3_2:+15979217 Msa0397020:CDS
GTTCACCAATCACAAAATCA+AGG 0.483041 3_2:+15979201 Msa0397020:CDS
CCATCGAATGCAGGAGAAGA+TGG 0.488648 3_2:+15977314 Msa0397020:intron
GTGCAGCGTTTAATTCGATC+AGG 0.489043 3_2:+15978483 Msa0397020:CDS
AGTTTCACTTATGAGACTAA+AGG 0.494296 3_2:+15976774 Msa0397020:CDS
ATGATGAATGCAAGATTTGA+CGG 0.497379 3_2:+15976607 Msa0397020:CDS
ATATTCATTCTCATAGAGAA+AGG 0.497816 3_2:-15979755 None:intergenic
CAGTGGTGAAGTCTCTTACA+AGG 0.501321 3_2:+15977358 Msa0397020:CDS
AAACTTACCCTTGGAGAAGA+TGG 0.501344 3_2:+15978360 Msa0397020:CDS
TGCTAAGAAATCTGAAATTG+AGG 0.502480 3_2:+15976291 Msa0397020:CDS
CAAGCAAAACTCCCAACGAC+CGG 0.505505 3_2:-15976525 None:intergenic
GGCGACAGCACTTTCTCGGT+TGG 0.505523 3_2:+15978320 Msa0397020:CDS
GCCATCAATTCGAAAATCGT+TGG 0.508431 3_2:+15976402 Msa0397020:CDS
AAAATGGTGTGAATTTCATT+GGG 0.508734 3_2:+15979483 Msa0397020:CDS
AGTGAAAAGGCGGCTGCGGT+TGG 0.510804 3_2:+15978933 Msa0397020:CDS
AACTTGTTTCGGTACAACAC+GGG 0.514535 3_2:+15979144 Msa0397020:CDS
ACAAAATAGATATCAAAAGC+TGG 0.514590 3_2:-15979022 None:intergenic
TGCATTTAGAGATGATAACT+TGG 0.517188 3_2:-15978430 None:intergenic
AGCTTAATCGAGAATGCTAC+CGG 0.519569 3_2:+15979080 Msa0397020:CDS
TTAGGAAATGTAGAAAATCA+AGG 0.525199 3_2:+15979267 Msa0397020:CDS
CAACATGGAAAACTCAGAAA+AGG 0.525821 3_2:-15976320 None:intergenic
GCCACTAGTTCAGTATTTGA+AGG 0.526366 3_2:+15977602 Msa0397020:CDS
TCCAATATTTGGATAAGTCG+TGG 0.526884 3_2:-15979389 None:intergenic
GCACTTCATATGGCTGAGGC+TGG 0.530551 3_2:+15977570 Msa0397020:CDS
CAACTTGTTTCGGTACAACA+CGG 0.531106 3_2:+15979143 Msa0397020:CDS
AGAAGAGAGGAGGGAAGCAG+TGG 0.533234 3_2:+15977386 Msa0397020:CDS
TAAAGACAACATGGAAAAGA+GGG 0.541292 3_2:+15976213 Msa0397020:CDS
CTTGCAAGAATAGCTGATGC+TGG 0.544042 3_2:-15978570 None:intergenic
AGGCGGATCGGAAGAATCCA+AGG 0.544805 3_2:+15977447 Msa0397020:CDS
AGAGAGTGAAAAGGCGGCTG+CGG 0.546328 3_2:+15978929 Msa0397020:CDS
CTAGTTCAGTATTTGAAGGA+AGG 0.546371 3_2:+15977606 Msa0397020:CDS
CTTTGAAGTCTTGAAGCACA+AGG 0.554168 3_2:-15975414 None:intergenic
GATCACAGCAAACTTACCCT+TGG 0.558315 3_2:+15978351 Msa0397020:CDS
GATAAGTCGTGGAACCGCAC+CGG 0.558831 3_2:-15979378 None:intergenic
CCAAGGGTGTATCGTTATGT+TGG 0.559024 3_2:+15977464 Msa0397020:CDS
AAGATATTCGGTCAACTCAT+CGG 0.566212 3_2:-15978856 None:intergenic
CCGCATCATGTGAAGCAACT+GGG 0.567764 3_2:-15977509 None:intergenic
AGTGGTGAAGTCTCTTACAA+GGG 0.569174 3_2:+15977359 Msa0397020:CDS
CAATTGCTCCATCTTCTCCA+AGG 0.571233 3_2:-15978368 None:intergenic
ATATGGAGAATCTGCTCAAG+TGG 0.571666 3_2:+15979622 Msa0397020:CDS
CTAACGTTCCAGCAGTTCGA+AGG 0.573214 3_2:+15977427 Msa0397020:CDS
GAGTATAGAAAGAAAGGACA+AGG 0.574108 3_2:-15975342 None:intergenic
TCTAGAAGTTGGTGATGCAA+AGG 0.574108 3_2:+15979538 Msa0397020:CDS
AAGGGATTCAGAAGAGAGGA+GGG 0.574393 3_2:+15977377 Msa0397020:CDS
TCTTGCAAGAATTGCTCAGT+CGG 0.575292 3_2:+15978584 Msa0397020:CDS
CCCAGTTGCTTCACATGATG+CGG 0.578097 3_2:+15977509 Msa0397020:CDS
ATCCACATCAGAGAGTGAAA+AGG 0.578700 3_2:+15978920 Msa0397020:CDS
GATGATTGGAGAAATAGAAG+AGG 0.579129 3_2:+15976684 Msa0397020:CDS
TGGTAATTTCTCAACCAACA+TGG 0.579200 3_2:-15976335 None:intergenic
TCCTTCAAATACTGAACTAG+TGG 0.585593 3_2:-15977603 None:intergenic
AAATGCACTTCATATGGCTG+AGG 0.585763 3_2:+15977566 Msa0397020:CDS
CCAGCAGTTCGAAGGCGGAT+CGG 0.587143 3_2:+15977435 Msa0397020:CDS
CCAACATAACGATACACCCT+TGG 0.587749 3_2:-15977464 None:intergenic
ATCTGTGCTCATGACTCTAA+GGG 0.588747 3_2:+15978545 Msa0397020:CDS
ACACCCTATTAAGCAAATTG+AGG 0.590072 3_2:+15976483 Msa0397020:CDS
ACGTTCCAGCAGTTCGAAGG+CGG 0.594463 3_2:+15977430 Msa0397020:CDS
GAAGAGAGGAGGGAAGCAGT+GGG 0.594508 3_2:+15977387 Msa0397020:CDS
CGTGAAGCGGTTTATAACAC+CGG 0.597145 3_2:-15979099 None:intergenic
CTAAAGGAGTTAATGAGAAG+CGG 0.597717 3_2:+15976790 Msa0397020:CDS
AGAAGCGGAAAATTGGATGG+TGG 0.598676 3_2:+15976805 Msa0397020:CDS
CAAGGGATTCAGAAGAGAGG+AGG 0.598706 3_2:+15977376 Msa0397020:CDS
TGTCAGATGAATTCGTGAAG+CGG 0.600084 3_2:-15979112 None:intergenic
AATGCAGGAGAAGATGGTTG+AGG 0.600802 3_2:+15977320 Msa0397020:intron
AAAACAAGATAAATTACAAG+AGG 0.608659 3_2:-15979980 None:intergenic
TTTGGCGGAATCACAGTGAA+CGG 0.611017 3_2:+15979840 Msa0397020:three_prime_UTR
TTCACCAATCACAAAATCAA+GGG 0.611717 3_2:+15979202 Msa0397020:CDS
ACTTGTTTCGGTACAACACG+GGG 0.617581 3_2:+15979145 Msa0397020:CDS
AATATTGGAAGATAAAGAGA+AGG 0.618765 3_2:+15979403 Msa0397020:CDS
AGTAACCGATATACTCAAGA+GGG 0.618979 3_2:+15978989 Msa0397020:CDS
TGGGTCATCACCATTAAGGA+TGG 0.619769 3_2:-15977490 None:intergenic
ACATGACGCATGATATCGGC+CGG 0.621807 3_2:+15976506 Msa0397020:CDS
ACATGAGTTTGATGAAATCA+CGG 0.621898 3_2:-15979916 None:intergenic
GAACTGCTGGAACGTTAGAG+AGG 0.622766 3_2:-15977422 None:intergenic
ATGAGAAGCGGAAAATTGGA+TGG 0.627719 3_2:+15976802 Msa0397020:CDS
AAGTAACCGATATACTCAAG+AGG 0.631212 3_2:+15978988 Msa0397020:CDS
AATTGCTCCATCTTCTCCAA+GGG 0.635105 3_2:-15978367 None:intergenic
TTTCATGAATAAAGACAACA+TGG 0.635427 3_2:+15976204 Msa0397020:exon
GGATGGTGGTTTGATTAACG+AGG 0.637911 3_2:+15976819 Msa0397020:CDS
CACATCAGAGAGTGAAAAGG+CGG 0.639535 3_2:+15978923 Msa0397020:CDS
AAACAAGATAAATTACAAGA+GGG 0.643366 3_2:-15979979 None:intergenic
TTTGAAGTCTTGAAGCACAA+GGG 0.657932 3_2:-15975413 None:intergenic
GCATATTGTGAAGTTCATGA+CGG 0.663620 3_2:+15979317 Msa0397020:CDS
TTACAAGGGATTCAGAAGAG+AGG 0.665641 3_2:+15977373 Msa0397020:CDS
AATCTCTTGAGAATGAGCTA+CGG 0.669448 3_2:+15976425 Msa0397020:CDS
GGCGGATCGGAAGAATCCAA+GGG 0.685042 3_2:+15977448 Msa0397020:CDS
TTGTTTAGTCAAAGCCGGTG+CGG 0.697796 3_2:+15979364 Msa0397020:CDS
GGAAATGTAGAAAATCAAGG+TGG 0.736715 3_2:+15979270 Msa0397020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAGTAAAATATGTTTT+CGG - chr3_2:15978195-15978214 None:intergenic 10.0%
!!! AAACATATTTTACTTAATAT+CGG + chr3_2:15978196-15978215 Msa0397020:intron 10.0%
!! TATGTAATAATTTATTAGAA+AGG + chr3_2:15980031-15980050 Msa0397020:three_prime_UTR 10.0%
!! TTTAATATCCCAATTAATTA+AGG + chr3_2:15975686-15975705 Msa0397020:intron 15.0%
!! AACAAAAACCTTAATTAATT+GGG - chr3_2:15975697-15975716 None:intergenic 15.0%
!!! TAACTTGAATAATTTTTTGT+CGG + chr3_2:15975982-15976001 Msa0397020:intron 15.0%
!! TATAAATAATAGAGAACAAA+AGG - chr3_2:15977660-15977679 None:intergenic 15.0%
!! ATCTACTAAATTACTAAATT+TGG + chr3_2:15977798-15977817 Msa0397020:intron 15.0%
!! TAATGTTATAAGAGTTTAAT+AGG + chr3_2:15977844-15977863 Msa0397020:intron 15.0%
!! GTATAACATGAAAAAAAAAA+TGG - chr3_2:15977921-15977940 None:intergenic 15.0%
!!! AACATATTTTACTTAATATC+GGG + chr3_2:15978197-15978216 Msa0397020:intron 15.0%
!! TAATAATTTATTAGAAAGGA+AGG + chr3_2:15980035-15980054 Msa0397020:three_prime_UTR 15.0%
!! CATATAAAAACAAATTCAGA+AGG - chr3_2:15975595-15975614 None:intergenic 20.0%
!! GAACAAAAACCTTAATTAAT+TGG - chr3_2:15975698-15975717 None:intergenic 20.0%
!!! TACTATGTTTTTGTAAATGT+TGG + chr3_2:15976979-15976998 Msa0397020:intron 20.0%
!! CCAACAAAAAAAATAGTAAA+AGG - chr3_2:15977020-15977039 None:intergenic 20.0%
!!! CCTTTTACTATTTTTTTTGT+TGG + chr3_2:15977017-15977036 Msa0397020:intron 20.0%
!!! ATTTTTTTTGTTGGAAATGT+TGG + chr3_2:15977026-15977045 Msa0397020:intron 20.0%
!! TACTTATTTAAGCTTATTAC+TGG - chr3_2:15977291-15977310 None:intergenic 20.0%
!! TAAACTCTTATAACATTACA+TGG - chr3_2:15977842-15977861 None:intergenic 20.0%
!! AACATGAAAAAAAAAATGGA+GGG - chr3_2:15977917-15977936 None:intergenic 20.0%
!! TAACATGAAAAAAAAAATGG+AGG - chr3_2:15977918-15977937 None:intergenic 20.0%
!! CTTCATTTGTACAATTAATT+TGG - chr3_2:15978111-15978130 None:intergenic 20.0%
!!! AGTAATAAACATTTTGACAA+GGG - chr3_2:15978397-15978416 None:intergenic 20.0%
!! TTGTCAAAATGTTTATTACT+GGG + chr3_2:15978397-15978416 Msa0397020:CDS 20.0%
!! AGAAGAAAAATGAAAGAAAA+AGG + chr3_2:15978738-15978757 Msa0397020:CDS 20.0%
!!! ATGTTATTTTCCTTAAGAAA+AGG - chr3_2:15978783-15978802 None:intergenic 20.0%
!! ATTATAAAAAGTCTAGAAGT+TGG + chr3_2:15979527-15979546 Msa0397020:CDS 20.0%
!! AAACAAGATAAATTACAAGA+GGG - chr3_2:15979982-15980001 None:intergenic 20.0%
!! AAAACAAGATAAATTACAAG+AGG - chr3_2:15979983-15980002 None:intergenic 20.0%
!! AATTATTACATACACTAGAA+TGG - chr3_2:15980023-15980042 None:intergenic 20.0%
! GTTGTAAATGTAATGACATA+TGG - chr3_2:15975270-15975289 None:intergenic 25.0%
! GCTATGTAGCATTAAATATA+AGG - chr3_2:15975292-15975311 None:intergenic 25.0%
!!! TAATAAGAGTCATTTTCAGA+CGG - chr3_2:15975314-15975333 None:intergenic 25.0%
! AAGAGAAAAAAAGAAGAAAG+TGG + chr3_2:15975455-15975474 Msa0397020:five_prime_UTR 25.0%
! TTTCAAAGTTCAACTATGTT+TGG + chr3_2:15975501-15975520 Msa0397020:five_prime_UTR 25.0%
!! AGTTTATGTTGATTGATTGT+TGG + chr3_2:15975762-15975781 Msa0397020:intron 25.0%
!! AGTACTTTTCTCTAGTTATA+TGG + chr3_2:15976112-15976131 Msa0397020:intron 25.0%
! TTTCATGAATAAAGACAACA+TGG + chr3_2:15976204-15976223 Msa0397020:exon 25.0%
!!! ATTGATTTTCGAGAAAAGAT+TGG + chr3_2:15976568-15976587 Msa0397020:CDS 25.0%
!! CTCATGAAAAATTCTGATTT+TGG - chr3_2:15976655-15976674 None:intergenic 25.0%
! ACTTCTTAGCAATTGAATTA+TGG - chr3_2:15976905-15976924 None:intergenic 25.0%
!! TCTAAAATTCTTGCACATTT+AGG + chr3_2:15977049-15977068 Msa0397020:intron 25.0%
! AATAAGCTATAAACAGCTTA+TGG + chr3_2:15977203-15977222 Msa0397020:intron 25.0%
!! TTGTGAGTTCTAACAATATT+TGG - chr3_2:15977259-15977278 None:intergenic 25.0%
! TAATCAAAATGCACTTCATA+TGG + chr3_2:15977560-15977579 Msa0397020:CDS 25.0%
! TTTATAGAAATCCGAACTTA+TGG - chr3_2:15977695-15977714 None:intergenic 25.0%
! TCTATAAACTCTCAATTAGA+TGG + chr3_2:15977707-15977726 Msa0397020:intron 25.0%
! TACAATAGTAATCAACAGAA+AGG + chr3_2:15978084-15978103 Msa0397020:intron 25.0%
!! CACTTCTTTTGTATAAGAAT+TGG + chr3_2:15978142-15978161 Msa0397020:intron 25.0%
! TGAAAATGAGTGTTACATAT+AGG + chr3_2:15978167-15978186 Msa0397020:intron 25.0%
! GAAAATGAGTGTTACATATA+GGG + chr3_2:15978168-15978187 Msa0397020:intron 25.0%
!! AAACTTAATTGAGTTGTGAT+TGG - chr3_2:15978232-15978251 None:intergenic 25.0%
!!! GTAATAAACATTTTGACAAG+GGG - chr3_2:15978396-15978415 None:intergenic 25.0%
!!! CAGTAATAAACATTTTGACA+AGG - chr3_2:15978398-15978417 None:intergenic 25.0%
! CTTGTCAAAATGTTTATTAC+TGG + chr3_2:15978396-15978415 Msa0397020:CDS 25.0%
!!! TTTCATTTTTCTTCTCACTT+TGG - chr3_2:15978733-15978752 None:intergenic 25.0%
! AGGAAAATAACATCAAAATC+AGG + chr3_2:15978790-15978809 Msa0397020:CDS 25.0%
! ATGACTTTCATCAAGATATT+CGG - chr3_2:15978871-15978890 None:intergenic 25.0%
! ACAAAATAGATATCAAAAGC+TGG - chr3_2:15979025-15979044 None:intergenic 25.0%
! TTAGGAAATGTAGAAAATCA+AGG + chr3_2:15979267-15979286 Msa0397020:CDS 25.0%
! TCTCTTTATCTTCCAATATT+TGG - chr3_2:15979403-15979422 None:intergenic 25.0%
! AATATTGGAAGATAAAGAGA+AGG + chr3_2:15979403-15979422 Msa0397020:CDS 25.0%
! AAAATGGTGTGAATTTCATT+GGG + chr3_2:15979483-15979502 Msa0397020:CDS 25.0%
! AATTTCATTGGGAAATTATC+AGG + chr3_2:15979494-15979513 Msa0397020:CDS 25.0%
! GATGTTGGAGAAAATATTTA+AGG + chr3_2:15979580-15979599 Msa0397020:CDS 25.0%
! ATATTCATTCTCATAGAGAA+AGG - chr3_2:15979758-15979777 None:intergenic 25.0%
! CTCTATGAGAATGAATATTA+TGG + chr3_2:15979760-15979779 Msa0397020:three_prime_UTR 25.0%
!!! AAGCATGAAGTTCATTTTTT+TGG + chr3_2:15979945-15979964 Msa0397020:three_prime_UTR 25.0%
! AAGGTTGTAAAGAAAAAATC+AGG + chr3_2:15980054-15980073 Msa0397020:three_prime_UTR 25.0%
! CAAGAAGAGTATAGAAAGAA+AGG - chr3_2:15975351-15975370 None:intergenic 30.0%
AAAAAAAGAAGAAAGTGGAG+TGG + chr3_2:15975460-15975479 Msa0397020:five_prime_UTR 30.0%
! TGGTTAAACACAGATTGTTT+TGG + chr3_2:15975940-15975959 Msa0397020:intron 30.0%
! TTCAAGTTAGAATTCGAACT+CGG - chr3_2:15975971-15975990 None:intergenic 30.0%
!!! TATTTTTTGTCTTAACCCTC+TGG - chr3_2:15976063-15976082 None:intergenic 30.0%
! ACTTTTCTCTAGTTATATGG+TGG + chr3_2:15976115-15976134 Msa0397020:intron 30.0%
ATAAAGACAACATGGAAAAG+AGG + chr3_2:15976212-15976231 Msa0397020:CDS 30.0%
TAAAGACAACATGGAAAAGA+GGG + chr3_2:15976213-15976232 Msa0397020:CDS 30.0%
! TGCTAAGAAATCTGAAATTG+AGG + chr3_2:15976291-15976310 Msa0397020:CDS 30.0%
TCACTCAATTCATTCAAGAT+TGG - chr3_2:15976361-15976380 None:intergenic 30.0%
! TGTCCTCAATTTGCTTAATA+GGG - chr3_2:15976489-15976508 None:intergenic 30.0%
! ATGTCCTCAATTTGCTTAAT+AGG - chr3_2:15976490-15976509 None:intergenic 30.0%
GAAAATCAATAGACACTTCA+AGG - chr3_2:15976558-15976577 None:intergenic 30.0%
ATGATGAATGCAAGATTTGA+CGG + chr3_2:15976607-15976626 Msa0397020:CDS 30.0%
! AATTTTTCATGAGTGAAACG+AGG + chr3_2:15976662-15976681 Msa0397020:CDS 30.0%
! GTGATTTTGCAACTTAAGAA+TGG + chr3_2:15976733-15976752 Msa0397020:CDS 30.0%
AGTTTCACTTATGAGACTAA+AGG + chr3_2:15976774-15976793 Msa0397020:CDS 30.0%
!!! TTGCTAAGAAGTATTGCTTT+TGG + chr3_2:15976913-15976932 Msa0397020:CDS 30.0%
!! TTTTGGAAACGATGAGAAAA+AGG + chr3_2:15976930-15976949 Msa0397020:CDS 30.0%
TAAGCTGTCTCTATAACAAA+AGG + chr3_2:15977124-15977143 Msa0397020:intron 30.0%
! ATAAATTGCTTTGATAGCTC+AGG + chr3_2:15977179-15977198 Msa0397020:intron 30.0%
GATTATACGAACCATAAGTT+CGG + chr3_2:15977681-15977700 Msa0397020:intron 30.0%
AATTAGATGGACGTAGAAAT+AGG + chr3_2:15977720-15977739 Msa0397020:intron 30.0%
! AGTTTTACACTGACATCAAA+TGG + chr3_2:15977888-15977907 Msa0397020:intron 30.0%
TTAGAAAAGTGAAAGTGATG+TGG + chr3_2:15977987-15978006 Msa0397020:intron 30.0%
GATTTAAAGGTTATGCATGT+TGG - chr3_2:15978059-15978078 None:intergenic 30.0%
! TGTTGATTACTATTGTACCA+CGG - chr3_2:15978081-15978100 None:intergenic 30.0%
TCAAATTATCTTGTTACTGC+AGG + chr3_2:15978273-15978292 Msa0397020:intron 30.0%
CAAATTATCTTGTTACTGCA+GGG + chr3_2:15978274-15978293 Msa0397020:intron 30.0%
TGACATGAACAAAATCCTAA+TGG + chr3_2:15978299-15978318 Msa0397020:CDS 30.0%
TGCATTTAGAGATGATAACT+TGG - chr3_2:15978433-15978452 None:intergenic 30.0%
TTAATTCGATCAGGAATTAC+AGG + chr3_2:15978492-15978511 Msa0397020:CDS 30.0%
GTAGATGACCTTGAATTATA+GGG - chr3_2:15978671-15978690 None:intergenic 30.0%
AGTAGATGACCTTGAATTAT+AGG - chr3_2:15978672-15978691 None:intergenic 30.0%
! ACTACTCTTACCTTTTCTTA+AGG + chr3_2:15978770-15978789 Msa0397020:CDS 30.0%
TAACATCAAAATCAGGTGTA+AGG + chr3_2:15978797-15978816 Msa0397020:CDS 30.0%
! CAAGAAACTACAACTTGTTT+CGG + chr3_2:15979133-15979152 Msa0397020:CDS 30.0%
TTCACCAATCACAAAATCAA+GGG + chr3_2:15979202-15979221 Msa0397020:CDS 30.0%
CTCAAAATTCACTTTCTCTT+AGG + chr3_2:15979249-15979268 Msa0397020:CDS 30.0%
TCACAATATGCATTCATTGA+AGG - chr3_2:15979308-15979327 None:intergenic 30.0%
!! ACATTTTGTTTAGTCAAAGC+CGG + chr3_2:15979359-15979378 Msa0397020:CDS 30.0%
TCTCTTGCAAGATGAAATTT+GGG + chr3_2:15979460-15979479 Msa0397020:CDS 30.0%
CAAGATGAAATTTGGGAAAA+TGG + chr3_2:15979467-15979486 Msa0397020:CDS 30.0%
GAAAATGGTGTGAATTTCAT+TGG + chr3_2:15979482-15979501 Msa0397020:CDS 30.0%
!! AGGTTCAAGAAAAAGCATTA+TGG + chr3_2:15979558-15979577 Msa0397020:CDS 30.0%
!! AGAAAAAGCATTATGGATGT+TGG + chr3_2:15979565-15979584 Msa0397020:CDS 30.0%
GAAGAACATAGAGTGAAATA+TGG + chr3_2:15979605-15979624 Msa0397020:CDS 30.0%
! TCAAGTGGTTCTTATTGATT+TGG + chr3_2:15979637-15979656 Msa0397020:CDS 30.0%
CATTCATTTATGTGCATGTT+TGG + chr3_2:15979805-15979824 Msa0397020:three_prime_UTR 30.0%
ACATGAGTTTGATGAAATCA+CGG - chr3_2:15979919-15979938 None:intergenic 30.0%
!!! AGAATGGTTTTATGTGTTTC+AGG - chr3_2:15980007-15980026 None:intergenic 30.0%
GAGTATAGAAAGAAAGGACA+AGG - chr3_2:15975345-15975364 None:intergenic 35.0%
! TTTGAAGTCTTGAAGCACAA+GGG - chr3_2:15975416-15975435 None:intergenic 35.0%
AGTTCAACTATGTTTGGTCT+TGG + chr3_2:15975507-15975526 Msa0397020:five_prime_UTR 35.0%
TAGCTTCAAAGTTTCTTTGC+AGG + chr3_2:15975556-15975575 Msa0397020:five_prime_UTR 35.0%
! CATGGAAAAGAGGGAATTTT+CGG + chr3_2:15976222-15976241 Msa0397020:CDS 35.0%
CAACATGGAAAACTCAGAAA+AGG - chr3_2:15976323-15976342 None:intergenic 35.0%
! CTTTTCTGAGTTTTCCATGT+TGG + chr3_2:15976321-15976340 Msa0397020:CDS 35.0%
TGGTAATTTCTCAACCAACA+TGG - chr3_2:15976338-15976357 None:intergenic 35.0%
CTCAATTCATTCAAGATTGG+TGG - chr3_2:15976358-15976377 None:intergenic 35.0%
! TCCAACGATTTTCGAATTGA+TGG - chr3_2:15976406-15976425 None:intergenic 35.0%
AATCTCTTGAGAATGAGCTA+CGG + chr3_2:15976425-15976444 Msa0397020:CDS 35.0%
ACACCCTATTAAGCAAATTG+AGG + chr3_2:15976483-15976502 Msa0397020:CDS 35.0%
GATGATTGGAGAAATAGAAG+AGG + chr3_2:15976684-15976703 Msa0397020:CDS 35.0%
CTAAAGGAGTTAATGAGAAG+CGG + chr3_2:15976790-15976809 Msa0397020:CDS 35.0%
GTTAATGAGAAGCGGAAAAT+TGG + chr3_2:15976798-15976817 Msa0397020:CDS 35.0%
! CAACTATCGCATTTCTTTTC+AGG + chr3_2:15976845-15976864 Msa0397020:CDS 35.0%
TAAGTAAATCCATCGAATGC+AGG + chr3_2:15977305-15977324 Msa0397020:intron 35.0%
! GGTTGAATTTTTATCAGCAG+TGG + chr3_2:15977341-15977360 Msa0397020:CDS 35.0%
TCCTTCAAATACTGAACTAG+TGG - chr3_2:15977606-15977625 None:intergenic 35.0%
CTAGTTCAGTATTTGAAGGA+AGG + chr3_2:15977606-15977625 Msa0397020:CDS 35.0%
ATGCATAACCTTTAAATCCG+TGG + chr3_2:15978061-15978080 Msa0397020:intron 35.0%
CTATTGTACCACGGATTTAA+AGG - chr3_2:15978072-15978091 None:intergenic 35.0%
CTTTCAAGCCCTATAATTCA+AGG + chr3_2:15978660-15978679 Msa0397020:CDS 35.0%
AATAGCATGTCTTCTCATCT+TGG + chr3_2:15978702-15978721 Msa0397020:CDS 35.0%
AAGATATTCGGTCAACTCAT+CGG - chr3_2:15978859-15978878 None:intergenic 35.0%
!!! GTTACTTTTTTATCGCTAGC+GGG - chr3_2:15978975-15978994 None:intergenic 35.0%
!!! GGTTACTTTTTTATCGCTAG+CGG - chr3_2:15978976-15978995 None:intergenic 35.0%
AAGTAACCGATATACTCAAG+AGG + chr3_2:15978988-15979007 Msa0397020:CDS 35.0%
AGTAACCGATATACTCAAGA+GGG + chr3_2:15978989-15979008 Msa0397020:CDS 35.0%
ATTTGCCCTCTTGAGTATAT+CGG - chr3_2:15978997-15979016 None:intergenic 35.0%
! TCGATTAAGCTGTTTGTTGA+TGG - chr3_2:15979071-15979090 None:intergenic 35.0%
GTTCACCAATCACAAAATCA+AGG + chr3_2:15979201-15979220 Msa0397020:CDS 35.0%
!!! ATTTTGAGATAGTTGTGCCA+AGG - chr3_2:15979237-15979256 None:intergenic 35.0%
GGAAATGTAGAAAATCAAGG+TGG + chr3_2:15979270-15979289 Msa0397020:CDS 35.0%
GCATATTGTGAAGTTCATGA+CGG + chr3_2:15979317-15979336 Msa0397020:CDS 35.0%
TCCACGACTTATCCAAATAT+TGG + chr3_2:15979388-15979407 Msa0397020:CDS 35.0%
TCCAATATTTGGATAAGTCG+TGG - chr3_2:15979392-15979411 None:intergenic 35.0%
CTCTCTTGCAAGATGAAATT+TGG + chr3_2:15979459-15979478 Msa0397020:CDS 35.0%
TATGTGCATGTTTGGATTGA+CGG + chr3_2:15979813-15979832 Msa0397020:three_prime_UTR 35.0%
! ACAGTGAACGGTCATAATTT+TGG + chr3_2:15979852-15979871 Msa0397020:three_prime_UTR 35.0%
AAGCACAAGGGTGAAACATA+AGG - chr3_2:15975404-15975423 None:intergenic 40.0%
!! CTTTGAAGTCTTGAAGCACA+AGG - chr3_2:15975417-15975436 None:intergenic 40.0%
CTCACGTGATTAATGAGTTC+TGG + chr3_2:15975920-15975939 Msa0397020:intron 40.0%
! GCTTTCAACGCTGAAAGTTT+TGG + chr3_2:15976249-15976268 Msa0397020:CDS 40.0%
GAGTGATAACAGCGTTGTAT+TGG + chr3_2:15976375-15976394 Msa0397020:CDS 40.0%
GCCATCAATTCGAAAATCGT+TGG + chr3_2:15976402-15976421 Msa0397020:CDS 40.0%
ATGAGTGAAACGAGGATGAT+TGG + chr3_2:15976670-15976689 Msa0397020:CDS 40.0%
ATGAGAAGCGGAAAATTGGA+TGG + chr3_2:15976802-15976821 Msa0397020:CDS 40.0%
CTTGCACATTTAGGTCTGTT+TGG + chr3_2:15977058-15977077 Msa0397020:intron 40.0%
AGTGGTGAAGTCTCTTACAA+GGG + chr3_2:15977359-15977378 Msa0397020:CDS 40.0%
TTACAAGGGATTCAGAAGAG+AGG + chr3_2:15977373-15977392 Msa0397020:CDS 40.0%
ACATGATGCGGCAAAGTTAT+TGG + chr3_2:15977521-15977540 Msa0397020:CDS 40.0%
AAATGCACTTCATATGGCTG+AGG + chr3_2:15977566-15977585 Msa0397020:CDS 40.0%
GCCACTAGTTCAGTATTTGA+AGG + chr3_2:15977602-15977621 Msa0397020:CDS 40.0%
GAAGCAGAAAAGTTAGCGTT+CGG + chr3_2:15977761-15977780 Msa0397020:intron 40.0%
AAACTTACCCTTGGAGAAGA+TGG + chr3_2:15978360-15978379 Msa0397020:CDS 40.0%
AATTGCTCCATCTTCTCCAA+GGG - chr3_2:15978370-15978389 None:intergenic 40.0%
ATCTGTGCTCATGACTCTAA+GGG + chr3_2:15978545-15978564 Msa0397020:CDS 40.0%
TCTTGCAAGAATTGCTCAGT+CGG + chr3_2:15978584-15978603 Msa0397020:CDS 40.0%
AACATCTTCGTTGACGAGAA+TGG - chr3_2:15978613-15978632 None:intergenic 40.0%
ATCCACATCAGAGAGTGAAA+AGG + chr3_2:15978920-15978939 Msa0397020:CDS 40.0%
TGGTGATTTACTAGCATTGC+TGG - chr3_2:15979051-15979070 None:intergenic 40.0%
AGCTTAATCGAGAATGCTAC+CGG + chr3_2:15979080-15979099 Msa0397020:CDS 40.0%
TGTCAGATGAATTCGTGAAG+CGG - chr3_2:15979115-15979134 None:intergenic 40.0%
! CAACTTGTTTCGGTACAACA+CGG + chr3_2:15979143-15979162 Msa0397020:CDS 40.0%
! AACTTGTTTCGGTACAACAC+GGG + chr3_2:15979144-15979163 Msa0397020:CDS 40.0%
! GAGAGCAATTTTACGAGCAA+AGG - chr3_2:15979176-15979195 None:intergenic 40.0%
!! TCTAGAAGTTGGTGATGCAA+AGG + chr3_2:15979538-15979557 Msa0397020:CDS 40.0%
ATATGGAGAATCTGCTCAAG+TGG + chr3_2:15979622-15979641 Msa0397020:CDS 40.0%
! GTTTGGATTGACGGTTAGTT+TGG + chr3_2:15979822-15979841 Msa0397020:three_prime_UTR 40.0%
GTCGGACTTTACTTGCCTTA+TGG + chr3_2:15976000-15976019 Msa0397020:intron 45.0%
TATGTCGGAGTACGACCATA+AGG - chr3_2:15976018-15976037 None:intergenic 45.0%
! TCCTTTCTCTAGGAACCAGA+GGG + chr3_2:15976045-15976064 Msa0397020:intron 45.0%
GAGGACATGACGCATGATAT+CGG + chr3_2:15976502-15976521 Msa0397020:CDS 45.0%
AGAAGCGGAAAATTGGATGG+TGG + chr3_2:15976805-15976824 Msa0397020:CDS 45.0%
! GGATGGTGGTTTGATTAACG+AGG + chr3_2:15976819-15976838 Msa0397020:CDS 45.0%
! CAGGCGTCTAGTTTCATGTA+AGG + chr3_2:15976864-15976883 Msa0397020:CDS 45.0%
AATGCAGGAGAAGATGGTTG+AGG + chr3_2:15977320-15977339 Msa0397020:intron 45.0%
CAGTGGTGAAGTCTCTTACA+AGG + chr3_2:15977358-15977377 Msa0397020:CDS 45.0%
AAGGGATTCAGAAGAGAGGA+GGG + chr3_2:15977377-15977396 Msa0397020:CDS 45.0%
CCAACATAACGATACACCCT+TGG - chr3_2:15977467-15977486 None:intergenic 45.0%
! CCAAGGGTGTATCGTTATGT+TGG + chr3_2:15977464-15977483 Msa0397020:CDS 45.0%
ATGTTGGTCGCCATCCTTAA+TGG + chr3_2:15977480-15977499 Msa0397020:CDS 45.0%
TGGGTCATCACCATTAAGGA+TGG - chr3_2:15977493-15977512 None:intergenic 45.0%
CAACTGGGTCATCACCATTA+AGG - chr3_2:15977497-15977516 None:intergenic 45.0%
TAATGGCGACAGCACTTTCT+CGG + chr3_2:15978316-15978335 Msa0397020:CDS 45.0%
GATCACAGCAAACTTACCCT+TGG + chr3_2:15978351-15978370 Msa0397020:CDS 45.0%
CAATTGCTCCATCTTCTCCA+AGG - chr3_2:15978371-15978390 None:intergenic 45.0%
GTGCAGCGTTTAATTCGATC+AGG + chr3_2:15978483-15978502 Msa0397020:CDS 45.0%
CATCTGTGCTCATGACTCTA+AGG + chr3_2:15978544-15978563 Msa0397020:CDS 45.0%
CTTGCAAGAATAGCTGATGC+TGG - chr3_2:15978573-15978592 None:intergenic 45.0%
CACATCAGAGAGTGAAAAGG+CGG + chr3_2:15978923-15978942 Msa0397020:CDS 45.0%
CGTGAAGCGGTTTATAACAC+CGG - chr3_2:15979102-15979121 None:intergenic 45.0%
ACTTGTTTCGGTACAACACG+GGG + chr3_2:15979145-15979164 Msa0397020:CDS 45.0%
! GCAGCCCTTGATTTTGTGAT+TGG - chr3_2:15979209-15979228 None:intergenic 45.0%
TTGTTTAGTCAAAGCCGGTG+CGG + chr3_2:15979364-15979383 Msa0397020:CDS 45.0%
!! TGGATTGACGGTTAGTTTGG+CGG + chr3_2:15979825-15979844 Msa0397020:three_prime_UTR 45.0%
TTTGGCGGAATCACAGTGAA+CGG + chr3_2:15979840-15979859 Msa0397020:three_prime_UTR 45.0%
AGAAAGGAGGCCTCGTATGT+CGG - chr3_2:15976033-15976052 None:intergenic 50.0%
ATACGAGGCCTCCTTTCTCT+AGG + chr3_2:15976035-15976054 Msa0397020:intron 50.0%
! CTCTGGTTCCTAGAGAAAGG+AGG - chr3_2:15976046-15976065 None:intergenic 50.0%
! CTCCTTTCTCTAGGAACCAG+AGG + chr3_2:15976044-15976063 Msa0397020:intron 50.0%
! ACCCTCTGGTTCCTAGAGAA+AGG - chr3_2:15976049-15976068 None:intergenic 50.0%
ACATGACGCATGATATCGGC+CGG + chr3_2:15976506-15976525 Msa0397020:CDS 50.0%
CAAGCAAAACTCCCAACGAC+CGG - chr3_2:15976528-15976547 None:intergenic 50.0%
CCATCTTCTCCTGCATTCGA+TGG - chr3_2:15977317-15977336 None:intergenic 50.0%
CCATCGAATGCAGGAGAAGA+TGG + chr3_2:15977314-15977333 Msa0397020:intron 50.0%
CAAGGGATTCAGAAGAGAGG+AGG + chr3_2:15977376-15977395 Msa0397020:CDS 50.0%
GAACTGCTGGAACGTTAGAG+AGG - chr3_2:15977425-15977444 None:intergenic 50.0%
CTAACGTTCCAGCAGTTCGA+AGG + chr3_2:15977427-15977446 Msa0397020:CDS 50.0%
CCGCATCATGTGAAGCAACT+GGG - chr3_2:15977512-15977531 None:intergenic 50.0%
CCCAGTTGCTTCACATGATG+CGG + chr3_2:15977509-15977528 Msa0397020:CDS 50.0%
! TGGCTGAGGCTGGTTACTTT+AGG + chr3_2:15977580-15977599 Msa0397020:CDS 50.0%
!! GAGAAAGTGCTGTCGCCATT+AGG - chr3_2:15978317-15978336 None:intergenic 50.0%
! CGCCTTTTCACTCTCTGATG+TGG - chr3_2:15978925-15978944 None:intergenic 50.0%
ATCAAGGGCTGCAAACTCCT+TGG + chr3_2:15979217-15979236 Msa0397020:CDS 50.0%
TGGTCGTACTCCGACATACG+AGG + chr3_2:15976020-15976039 Msa0397020:intron 55.0%
CATGATATCGGCCGGTCGTT+GGG + chr3_2:15976514-15976533 Msa0397020:CDS 55.0%
AGAAGAGAGGAGGGAAGCAG+TGG + chr3_2:15977386-15977405 Msa0397020:CDS 55.0%
GAAGAGAGGAGGGAAGCAGT+GGG + chr3_2:15977387-15977406 Msa0397020:CDS 55.0%
ACGTTCCAGCAGTTCGAAGG+CGG + chr3_2:15977430-15977449 Msa0397020:CDS 55.0%
AGGCGGATCGGAAGAATCCA+AGG + chr3_2:15977447-15977466 Msa0397020:CDS 55.0%
GGCGGATCGGAAGAATCCAA+GGG + chr3_2:15977448-15977467 Msa0397020:CDS 55.0%
GCCGCATCATGTGAAGCAAC+TGG - chr3_2:15977513-15977532 None:intergenic 55.0%
GCACTTCATATGGCTGAGGC+TGG + chr3_2:15977570-15977589 Msa0397020:CDS 55.0%
AGAGAGTGAAAAGGCGGCTG+CGG + chr3_2:15978929-15978948 Msa0397020:CDS 55.0%
GATAAGTCGTGGAACCGCAC+CGG - chr3_2:15979381-15979400 None:intergenic 55.0%
GCATGATATCGGCCGGTCGT+TGG + chr3_2:15976513-15976532 Msa0397020:CDS 60.0%
CCAGCAGTTCGAAGGCGGAT+CGG + chr3_2:15977435-15977454 Msa0397020:CDS 60.0%
GGCGACAGCACTTTCTCGGT+TGG + chr3_2:15978320-15978339 Msa0397020:CDS 60.0%
AGTGAAAAGGCGGCTGCGGT+TGG + chr3_2:15978933-15978952 Msa0397020:CDS 60.0%
CCGATCCGCCTTCGAACTGC+TGG - chr3_2:15977438-15977457 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 15975248 15980091 15975248 ID=Msa0397020;Name=Msa0397020
chr3_2 mRNA 15975248 15980091 15975248 ID=Msa0397020-mRNA-1;Parent=Msa0397020;Name=Msa0397020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=335|1|1|1|0.66|0.5|4|343|832
chr3_2 exon 15975248 15975577 15975248 ID=Msa0397020-mRNA-1:exon:3560;Parent=Msa0397020-mRNA-1
chr3_2 exon 15976203 15976951 15976203 ID=Msa0397020-mRNA-1:exon:3561;Parent=Msa0397020-mRNA-1
chr3_2 exon 15977327 15977627 15977327 ID=Msa0397020-mRNA-1:exon:3562;Parent=Msa0397020-mRNA-1
chr3_2 exon 15978295 15980091 15978295 ID=Msa0397020-mRNA-1:exon:3563;Parent=Msa0397020-mRNA-1
chr3_2 five_prime_UTR 15975248 15975577 15975248 ID=Msa0397020-mRNA-1:five_prime_utr;Parent=Msa0397020-mRNA-1
chr3_2 five_prime_UTR 15976203 15976207 15976203 ID=Msa0397020-mRNA-1:five_prime_utr;Parent=Msa0397020-mRNA-1
chr3_2 CDS 15976208 15976951 15976208 ID=Msa0397020-mRNA-1:cds;Parent=Msa0397020-mRNA-1
chr3_2 CDS 15977327 15977627 15977327 ID=Msa0397020-mRNA-1:cds;Parent=Msa0397020-mRNA-1
chr3_2 CDS 15978295 15979748 15978295 ID=Msa0397020-mRNA-1:cds;Parent=Msa0397020-mRNA-1
chr3_2 three_prime_UTR 15979749 15980091 15979749 ID=Msa0397020-mRNA-1:three_prime_utr;Parent=Msa0397020-mRNA-1
Gene Sequence

>Msa0397020

ATGAATAAAGACAACATGGAAAAGAGGGAATTTTCGGATTTGCTTTCAACGCTGAAAGTTTTGGCTGATGAAGTTGTTTCGTTTGCTAAGAAATCTGAAATTGAGGTAGATGCCTTTTCTGAGTTTTCCATGTTGGTTGAGAAATTACCACCAATCTTGAATGAATTGAGTGATAACAGCGTTGTATTGGACAAGCCATCAATTCGAAAATCGTTGGAATCTCTTGAGAATGAGCTACGGCGTGCTAAAGCTTTGACGAAAAGCTCAAATTTGAGACACCCTATTAAGCAAATTGAGGACATGACGCATGATATCGGCCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTGTCTATTGATTTTCGAGAAAAGATTGGTACATTGCAAAGAGAAATGATGAATGCAAGATTTGACGGCAGTTCAAGTATTACTTCAAGTCCAAAATCAGAATTTTTCATGAGTGAAACGAGGATGATTGGAGAAATAGAAGAGGAAATAGTTCATGTTTCTATTGATGATGTGATTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTATGAGACTAAAGGAGTTAATGAGAAGCGGAAAATTGGATGGTGGTTTGATTAACGAGGAAGCAACTATCGCATTTCTTTTCAGGCGTCTAGTTTCATGTAAGGCAGACAATAGACTATCCATAATTCAATTGCTAAGAAGTATTGCTTTTGGAAACGATGAGAAAAAGGAGAAGATGGTTGAGGTTGAATTTTTATCAGCAGTGGTGAAGTCTCTTACAAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAACGTTCCAGCAGTTCGAAGGCGGATCGGAAGAATCCAAGGGTGTATCGTTATGTTGGTCGCCATCCTTAATGGTGATGACCCAGTTGCTTCACATGATGCGGCAAAGTTATTGGATATTTTGTCTAGTAATAATCAAAATGCACTTCATATGGCTGAGGCTGGTTACTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAAATCCTAATGGCGACAGCACTTTCTCGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCAATTGAGCCCCTTGTCAAAATGTTTATTACTGGGAAACTCGAATCCAAGTTATCATCTCTAAATGCACTACAAAATCTGTCTAGCTTGACAGAAAACGTGCAGCGTTTAATTCGATCAGGAATTACAGGATCTTTGCTACAGCTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTAAGGGAGCCAGCATCAGCTATTCTTGCAAGAATTGCTCAGTCGGAATCCATTCTCGTCAACGAAGATGTTGCGCAACAGATGCTTTCACTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCATCTACTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTACTCTTACCTTTTCTTAAGGAAAATAACATCAAAATCAGGTGTAAGGTCTTGAATTTGCTATACACACTCTCTAAAGATATGACCGATGAGTTGACCGAATATCTTGATGAAAGTCATATTTTCAACATTGTTAATATCGTCTCGTCATCCACATCAGAGAGTGAAAAGGCGGCTGCGGTTGGCATACTGAGTAATCTTCCCGCTAGCGATAAAAAAGTAACCGATATACTCAAGAGGGCAAATTTGCTCCAGCTTTTGATATCTATTTTGTATTCCAGCAATGCTAGTAAATCACCATCAACAAACAGCTTAATCGAGAATGCTACCGGTGTTATAAACCGCTTCACGAATTCATCTGACAAGAAACTACAACTTGTTTCGGTACAACACGGGGTGATTCCTTTGCTCGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCCTTGGCACAACTATCTCAAAATTCACTTTCTCTTAGGAAATGTAGAAAATCAAGGTGGCTATGTGTTCAACCTTCAATGAATGCATATTGTGAAGTTCATGACGGATATTGCTTTGTCAATAGCACATTTTGTTTAGTCAAAGCCGGTGCGGTTCCACGACTTATCCAAATATTGGAAGATAAAGAGAAGGAAGCAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTCTTGCAAGATGAAATTTGGGAAAATGGTGTGAATTTCATTGGGAAATTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCAAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGTTAGAGCTTCTGCAATCTCAATCAAGTTATTTTTGA
Protein sequence

>Msa0397020

MNKDNMEKREFSDLLSTLKVLADEVVSFAKKSEIEVDAFSEFSMLVEKLPPILNELSDNSVVLDKPSIRKSLESLENELRRAKALTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQREMMNARFDGSSSITSSPKSEFFMSETRMIGEIEEEIVHVSIDDVILQLKNGNDEEFAVSLMRLKELMRSGKLDGGLINEEATIAFLFRRLVSCKADNRLSIIQLLRSIAFGNDEKKEKMVEVEFLSAVVKSLTRDSEERREAVGLLLDLSNVPAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIEPLVKMFITGKLESKLSSLNALQNLSSLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKENNIKIRCKVLNLLYTLSKDMTDELTEYLDESHIFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLQLLISILYSSNASKSPSTNSLIENATGVINRFTNSSDKKLQLVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKCRKSRWLCVQPSMNAYCEVHDGYCFVNSTFCLVKAGAVPRLIQILEDKEKEAVEASLVALSTLLQDEIWENGVNFIGKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF*