AlfalfaGEDB | Msa0397340

M. sativa cultivar zhongmu-4 / Msa0397340

KEGG: -
GO: -
PFAM: PF00954.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0397340	RHN67076.1	56.604	106	42	1	2	107	202	303	9.97e-31	131
Msa0397340	RHN67076.1	84.795	171	23	1	103	270	429	599	8.88e-91	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0397340	sp\|Q9LPZ3\|Y1141_ARATH	62.727	110	41	0	151	260	500	609	9.87e-41	152
Msa0397340	sp\|Q9LPZ3\|Y1141_ARATH	35.000	100	65	0	3	102	194	293	5.79e-12	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0397340	A0A396IMY4	56.604	106	42	1	2	107	202	303	4.76e-31	131
Msa0397340	A0A396IMY4	84.795	171	23	1	103	270	429	599	4.24e-91	290

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0266380	Msa0397340	0.804082	2.562395e-49	-8.615850e-47
Msa0341860	Msa0397340	0.802881	4.545054e-49	-8.615850e-47
Msa0350380	Msa0397340	0.843382	1.449850e-58	-8.615850e-47
Msa0397340	Msa0406690	0.800196	1.614011e-48	-8.615850e-47
Msa0397340	Msa0444680	0.901846	1.772789e-78	-8.615850e-47
Msa0397340	Msa1247720	0.814531	1.469474e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0397340	MtrunA17_Chr3g0098791	84.795	171	23	1	103	270	429	599	8.16e-95	290
Msa0397340	MtrunA17_Chr3g0098791	56.604	106	42	1	2	107	202	303	9.17e-35	131
Msa0397340	MtrunA17_Chr3g0084411	85.093	161	21	1	103	260	426	586	9.08e-86	272
Msa0397340	MtrunA17_Chr3g0084411	68.868	106	33	0	2	107	196	301	2.40e-46	165
Msa0397340	MtrunA17_Chr3g0084621	81.871	171	28	1	103	270	430	600	2.97e-85	266
Msa0397340	MtrunA17_Chr3g0084621	69.725	109	31	1	1	107	196	304	8.65e-48	167
Msa0397340	MtrunA17_Chr3g0084431	85.443	158	23	0	103	260	424	581	4.03e-84	268
Msa0397340	MtrunA17_Chr3g0084431	74.766	107	27	0	1	107	201	307	2.07e-50	176
Msa0397340	MtrunA17_Chr3g0084491	86.076	158	16	2	103	260	442	593	1.73e-83	266
Msa0397340	MtrunA17_Chr3g0084491	70.093	107	32	0	1	107	209	315	5.75e-45	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0397340	AT1G11410.2	62.727	110	41	0	151	260	385	494	8.07e-42	152
Msa0397340	AT1G11410.2	35.000	100	65	0	3	102	79	178	5.28e-13	69.3
Msa0397340	AT1G11410.1	62.727	110	41	0	151	260	500	609	1.00e-41	152
Msa0397340	AT1G11410.1	35.000	100	65	0	3	102	194	293	5.88e-13	68.9
Msa0397340	AT1G11410.4	62.727	110	41	0	151	260	507	616	1.06e-41	152
Msa0397340	AT1G11410.4	35.000	100	65	0	3	102	201	300	5.79e-13	68.9
Msa0397340	AT1G11410.3	62.727	110	41	0	151	260	476	585	1.06e-41	152
Msa0397340	AT1G11410.3	35.000	100	65	0	3	102	170	269	5.27e-13	69.3
Msa0397340	AT4G27300.1	70.642	109	31	1	152	260	479	586	2.38e-41	151
Msa0397340	AT3G16030.3	67.327	101	33	0	161	261	535	635	1.53e-40	148

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Find 43 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAATCCAAGCTTCTGT+TGG	0.474079	3_2:-16696049	None:intergenic
AACCTCAGGACAAGGAGCCG+AGG	0.652408	3_2:+16695915	Msa0397340:CDS
AAGAGGAACTCGAAGCGTGC+TGG	0.454889	3_2:+16695393	Msa0397340:CDS
AAGAGGCTCTCTAAAACCTC+AGG	0.553810	3_2:+16695901	Msa0397340:CDS
AAGCGTGCTGGGACTGTTGC+AGG	0.300660	3_2:+16695405	Msa0397340:CDS
AAGTAATCCAAGCTTCTGTT+GGG	0.512838	3_2:-16696048	None:intergenic
AAGTTAGGAGAAGGTGGTTT+TGG	0.296248	3_2:+16695750	Msa0397340:CDS
ACAAGGCATAATTATCACAT+TGG	0.616090	3_2:-16694546	None:intergenic
AGAATGGAGCTAGATCCATC+CGG	0.635663	3_2:+16694454	Msa0397340:CDS
AGACGTTGTGAATTTCCGGA+TGG	0.635042	3_2:-16694469	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGGCATAATTATCACAT+TGG	-	chr3_2:16694549-16694568	None:intergenic	30.0%
TGCCAACATTTCAACTAAAA+TGG	+	chr3_2:16694632-16694651	Msa0397340:intron	30.0%
GCCAACATTTCAACTAAAAT+GGG	+	chr3_2:16694633-16694652	Msa0397340:intron	30.0%
GCAAATTTAGATATCAGAGA+TGG	+	chr3_2:16694838-16694857	Msa0397340:intron	30.0%
AATTTAGATATCAGAGATGG+TGG	+	chr3_2:16694841-16694860	Msa0397340:intron	30.0%
AAGGACAAGACATTTACATA+CGG	+	chr3_2:16694920-16694939	Msa0397340:intron	30.0%
GAAAAGGCAAAAGATGTAAT+AGG	-	chr3_2:16694977-16694996	None:intergenic	30.0%
GTGCTTAAAAGTAATAAGCT+CGG	-	chr3_2:16695070-16695089	None:intergenic	30.0%
GTTATGAATCAACTTCCAAA+TGG	+	chr3_2:16695119-16695138	Msa0397340:intron	30.0%
GGAGTTATGGCATTTATTAT+AGG	+	chr3_2:16695426-16695445	Msa0397340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	16694265	16696110	16694265	ID=Msa0397340;Name=Msa0397340
chr3_2	mRNA	16694265	16696110	16694265	ID=Msa0397340-mRNA-1;Parent=Msa0397340;Name=Msa0397340-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0\|0.66\|0.5\|1\|1\|1\|4\|0\|270
chr3_2	exon	16694265	16694571	16694265	ID=Msa0397340-mRNA-1:exon:3785;Parent=Msa0397340-mRNA-1
chr3_2	exon	16695379	16695495	16695379	ID=Msa0397340-mRNA-1:exon:3786;Parent=Msa0397340-mRNA-1
chr3_2	exon	16695640	16695785	16695640	ID=Msa0397340-mRNA-1:exon:3787;Parent=Msa0397340-mRNA-1
chr3_2	exon	16695868	16696110	16695868	ID=Msa0397340-mRNA-1:exon:3788;Parent=Msa0397340-mRNA-1
chr3_2	CDS	16694265	16694571	16694265	ID=Msa0397340-mRNA-1:cds;Parent=Msa0397340-mRNA-1
chr3_2	CDS	16695379	16695495	16695379	ID=Msa0397340-mRNA-1:cds;Parent=Msa0397340-mRNA-1
chr3_2	CDS	16695640	16695785	16695640	ID=Msa0397340-mRNA-1:cds;Parent=Msa0397340-mRNA-1
chr3_2	CDS	16695868	16696110	16695868	ID=Msa0397340-mRNA-1:cds;Parent=Msa0397340-mRNA-1

Gene Sequence

>Msa0397340

ATGCATGGTTTTCCTCAACTGGTTACTGAAAAGGGAGAAAGAATTTTGTATAGAGGAGGGTCATGGAATGGATTTCTTTTCAATGGTGTTTCTTGGCAAAGAATGCACAGAGTCTTGAATTTCTCTGTAATGTTCACTGACAAAGAATTCTCTTATCAATATGAAACTATGAATGATTCAATTATTACTAGAATGGAGCTAGATCCATCCGGAAATTCACAACGTCTTCTATGGTCAGATACGACACAAATTTGGGAGGCTATATCTTCTCGTCCTGCAGACCAATGTGATAATTATGCCTTGTGCGATCATAAAAAAAATAAGAGGAACTCGAAGCGTGCTGGGACTGTTGCAGGAGTTATGGCATTTATTATAGGACTAATTGTTATTGTATTGGTCAGATCATCATATAGAAAAAAGCTTGGATGTATAAAAAAGTTGTTTCACAAAAAGGAGAAGGAAGATAGTGACTTGGCAACAATATTTGATTTTTCGACCATCACTAATGCAACATATCACTTCTCTGTCAGGAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGAATAATGTTAGATGGCCGAGAGATTGCTGTTAAGAGGCTCTCTAAAACCTCAGGACAAGGAGCCGAGGAGTTCAAAAATGAAGTGAAGTTGATGGCAACACTTCAGCACCGAAATCTTGTAAAACTTCTTGGCTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTACGAATTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGGTTTGAACTTTCACACCTACCAAATATATTGA

Protein sequence

>Msa0397340

MHGFPQLVTEKGERILYRGGSWNGFLFNGVSWQRMHRVLNFSVMFTDKEFSYQYETMNDSIITRMELDPSGNSQRLLWSDTTQIWEAISSRPADQCDNYALCDHKKNKRNSKRAGTVAGVMAFIIGLIVIVLVRSSYRKKLGCIKKLFHKKEKEDSDLATIFDFSTITNATYHFSVRNKLGEGGFGPVYKGIMLDGREIAVKRLSKTSGQGAEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFGLNFHTYQIY*