AlfalfaGEDB | Msa0341860

M. sativa cultivar zhongmu-4 / Msa0341860

KEGG: -
GO: -
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341860	XP_003597755.2	98.918	462	4	1	1	462	1	461	0.0	928

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341860	sp\|Q9FKS8\|LHT1_ARATH	77.753	445	92	2	24	462	3	446	0.0	733

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003420	Msa0341860	0.804914	1.718284e-49	-8.615850e-47
Msa0011760	Msa0341860	0.841301	5.162555e-58	-8.615850e-47
Msa0014790	Msa0341860	0.855900	4.626179e-62	-8.615850e-47
Msa0016440	Msa0341860	-0.835723	1.420976e-56	-8.615850e-47
Msa0021980	Msa0341860	0.850920	1.242897e-60	-8.615850e-47
Msa0022090	Msa0341860	0.803591	3.239802e-49	-8.615850e-47
Msa0025060	Msa0341860	0.805177	1.513782e-49	-8.615850e-47
Msa0025090	Msa0341860	0.813583	2.377888e-51	-8.615850e-47
Msa0025690	Msa0341860	0.869973	2.071924e-66	-8.615850e-47
Msa0026120	Msa0341860	0.859010	5.557550e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0341860	MtrunA17_Chr2g0331721	98.918	462	4	1	1	462	1	461	928
Msa0341860	MtrunA17_Chr7g0230011	80.087	462	73	2	1	462	1	443	723
Msa0341860	MtrunA17_Chr6g0458931	74.348	460	100	3	3	462	14	455	722
Msa0341860	MtrunA17_Chr6g0459021	74.943	435	108	1	28	462	14	447	657
Msa0341860	MtrunA17_Chr6g0459001	70.042	474	100	2	30	462	4	476	648
Msa0341860	MtrunA17_Chr8g0376991	67.586	435	140	1	28	462	3	436	639
Msa0341860	MtrunA17_Chr6g0458921	74.359	429	106	3	35	462	3	428	628
Msa0341860	MtrunA17_Chr3g0122921	66.895	438	126	2	25	462	10	428	619
Msa0341860	MtrunA17_Chr6g0459031	72.430	428	116	2	36	462	2	428	619
Msa0341860	MtrunA17_Chr4g0057851	67.554	413	133	1	48	460	10	421	606

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341860	AT5G40780.1	77.753	445	92	2	24	462	3	446	0.0	733
Msa0341860	AT1G48640.1	72.789	441	116	2	25	462	14	453	0.0	672
Msa0341860	AT5G40780.3	79.198	399	82	1	64	462	1	398	0.0	670
Msa0341860	AT5G40780.2	79.198	399	82	1	64	462	1	398	0.0	670
Msa0341860	AT1G24400.1	74.318	440	112	1	23	462	3	441	0.0	664
Msa0341860	AT1G67640.1	74.318	440	111	2	23	462	4	441	0.0	649
Msa0341860	AT1G61270.1	65.734	429	146	1	21	448	6	434	0.0	593
Msa0341860	AT3G01760.1	64.747	434	146	4	29	456	9	441	0.0	586
Msa0341860	AT1G25530.1	60.369	434	166	2	28	461	12	439	0.0	527
Msa0341860	AT1G71680.1	55.902	449	191	3	20	462	1	448	2.62e-168	481

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Find 142 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATTGCTTCTTCAG+AGG	0.589072	2_4:-63806033	Msa0341860:CDS
AAAATTAGAATCACCACACC+AGG	0.621042	2_4:+63804277	None:intergenic
AAAGGGAGTTCAACCAGATG+TGG	0.615250	2_4:-63802832	Msa0341860:CDS
AACAAAAGGCAATTGATGAT+TGG	0.412955	2_4:-63805868	Msa0341860:CDS
AACAACAAATCTTAGGAGTC+GGG	0.497913	2_4:+63802308	None:intergenic
AACAGTTCCTGGTGTAGTTG+TGG	0.571899	2_4:+63802794	None:intergenic
AACCATCCAAGGGTCCAATG+TGG	0.683222	2_4:-63802674	Msa0341860:CDS
AAGAAATTGAAAACAGTTCC+TGG	0.370996	2_4:+63802783	None:intergenic
AATAAAACTCCTCTCCACAT+TGG	0.575187	2_4:+63802660	None:intergenic
AATACCCAATAAGAGCAACA+GGG	0.735246	2_4:+63802607	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTTGTTAAGTTTACCTC+TGG	+	chr2_4:63801496-63801515	None:intergenic	30.0%
CTCATATTCTCATACTTGAT+AGG	+	chr2_4:63801829-63801848	None:intergenic	30.0%
AATATGAGTGACCATATGAT+TGG	-	chr2_4:63801896-63801915	Msa0341860:intron	30.0%
TCAAACTTGTACCAATCATA+TGG	+	chr2_4:63801910-63801929	None:intergenic	30.0%
GGGATTTGACATGTAATTTA+CGG	+	chr2_4:63802316-63802335	None:intergenic	30.0%
TAGCTACCAACTTATGAAAA+TGG	+	chr2_4:63802496-63802515	None:intergenic	30.0%
TATTACCTCTCGAACAAATT+GGG	-	chr2_4:63802916-63802935	Msa0341860:intron	30.0%
TGACCAAAAAATGTTCATCT+AGG	+	chr2_4:63803001-63803020	None:intergenic	30.0%
ACTGCAGAAAATTCATGATT+TGG	-	chr2_4:63803418-63803437	Msa0341860:intron	30.0%
AAACGACCAAATTGAAGAAT+TGG	+	chr2_4:63803750-63803769	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	63801273	63806223	63801273	ID=Msa0341860;Name=Msa0341860
chr2_4	mRNA	63801273	63806223	63801273	ID=Msa0341860-mRNA-1;Parent=Msa0341860;Name=Msa0341860-mRNA-1;_AED=0.09;_eAED=0.09;_QI=142\|1\|1\|1\|1\|1\|8\|318\|462
chr2_4	exon	63801273	63801689	63801273	ID=Msa0341860-mRNA-1:exon:20465;Parent=Msa0341860-mRNA-1
chr2_4	exon	63801791	63801859	63801791	ID=Msa0341860-mRNA-1:exon:20464;Parent=Msa0341860-mRNA-1
chr2_4	exon	63801963	63802054	63801963	ID=Msa0341860-mRNA-1:exon:20463;Parent=Msa0341860-mRNA-1
chr2_4	exon	63802292	63802397	63802292	ID=Msa0341860-mRNA-1:exon:20462;Parent=Msa0341860-mRNA-1
chr2_4	exon	63802494	63802887	63802494	ID=Msa0341860-mRNA-1:exon:20461;Parent=Msa0341860-mRNA-1
chr2_4	exon	63803917	63804303	63803917	ID=Msa0341860-mRNA-1:exon:20460;Parent=Msa0341860-mRNA-1
chr2_4	exon	63805752	63805909	63805752	ID=Msa0341860-mRNA-1:exon:20459;Parent=Msa0341860-mRNA-1
chr2_4	exon	63805998	63806223	63805998	ID=Msa0341860-mRNA-1:exon:20458;Parent=Msa0341860-mRNA-1
chr2_4	five_prime_UTR	63806082	63806223	63806082	ID=Msa0341860-mRNA-1:five_prime_utr;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63805998	63806081	63805998	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63805752	63805909	63805752	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63803917	63804303	63803917	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63802494	63802887	63802494	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63802292	63802397	63802292	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63801963	63802054	63801963	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63801791	63801859	63801791	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	CDS	63801591	63801689	63801591	ID=Msa0341860-mRNA-1:cds;Parent=Msa0341860-mRNA-1
chr2_4	three_prime_UTR	63801273	63801590	63801273	ID=Msa0341860-mRNA-1:three_prime_utr;Parent=Msa0341860-mRNA-1

Gene Sequence

>Msa0341860

ATGGGAACTGAGTCTCCAACAAATGAAAAACCAATTGCTTCTTCAGAGGCTGAAAAGGTCTCTTTCTCAGCACAAGAACCAGAGAGAGATAAAAGAACGGCTGAACAAAAGGCAATTGATGATTGGCTTCCAATAACTTCTTCAAGGAATGCAAAATGGTGGTACGCAGCTTTTCACAACGTTACTGCCATGGTTGGAGCTGGTGTCTTGAGTCTTCCATCTGCCATGGCAAGTCTTGGATGGGGTCCTGGTGTGGTGATTCTAATTTTATCATGGATAATCACCCTCTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCAGGAAAACGGTTTGACAGATACCATGAGTTGGGACAAGAAGCATTTGGAGAAAAGCTTGGACTCTGGATTGTCGTGCCACAACAGTTGATATGTGAAGTTGGTGTGGACATTGTTTACATGGTCACCGGGGGAAAATCACTGCAGAAAATTCATGATTTGGTGTGTAAAAAAAATTGCAAATCAATGAAAACTACTTATTTCATCATGATATTTGCCTCTGTTCATTTTATTCTTGCCCATCTTCCCAACTTCAACTCCATTGCTGGTATCTCCTTGGCTGCAGCAATCATGTCTTTGAGTTACTCAACAATTGCATGGGTGGCTTCATTAAAAAAGGGAGTTCAACCAGATGTGGCCTATGGCTACAAAGCCACAACTACACCAGGAACTGTTTTCAATTTCTTCAGTGCTTTAGGTGATGTTGCATTTGCCTATGCCGGACACAATGTGGTGTTGGAGATTCAAGCAACAATCCCGTCCACACCGGAGAAACCATCCAAGGGTCCAATGTGGAGAGGAGTTTTATTAGCATATATTGTTGTAGCTTTGTGTTATTTCCCTGTTGCTCTTATTGGGTATTGGATGTTTGGCAATTCAGTTGCTGATAATATTCTTACTTCTCTTAATAAACCTACTTGGCTTATAGTTGCAGCTAACATGTTTGTTGTCATTCATGTTATAGGAAGCTATCAGTTGTATGCAATGCCTGTTTTTGACATGATTGAGACCGTAATGGTCAAAAAATTGCGTTTCAAGCCAACCCGACTCCTAAGATTTGTTGTTCGCAATGTTTATGTTGCATTCACAATGTTTGTGGGAATAACCTTCCCATTCTTTGGTGCCCTCCTTGGATTTTTTGGAGGATTGGCATTTGCTCCCACAACATATTTTCTTCCTTGCATTATGTGGCTTGCTATTTACAAACCTAAGAGGTTTAGCTTGTCTTGGTTCACAAACTGGATTTGCATTATACTTGGCCTCCTCCTTATGATTCTGTCACCAATAGGTGGATTGAGGCTAATCATACTCAATGCCAAGTCCTACGGTTTCTATACTTGA

Protein sequence

>Msa0341860

MGTESPTNEKPIASSEAEKVSFSAQEPERDKRTAEQKAIDDWLPITSSRNAKWWYAAFHNVTAMVGAGVLSLPSAMASLGWGPGVVILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQEAFGEKLGLWIVVPQQLICEVGVDIVYMVTGGKSLQKIHDLVCKKNCKSMKTTYFIMIFASVHFILAHLPNFNSIAGISLAAAIMSLSYSTIAWVASLKKGVQPDVAYGYKATTTPGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVLLAYIVVALCYFPVALIGYWMFGNSVADNILTSLNKPTWLIVAANMFVVIHVIGSYQLYAMPVFDMIETVMVKKLRFKPTRLLRFVVRNVYVAFTMFVGITFPFFGALLGFFGGLAFAPTTYFLPCIMWLAIYKPKRFSLSWFTNWICIILGLLLMILSPIGGLRLIILNAKSYGFYT*