AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0402460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402460 MtrunA17_Chr2g0302731 89.831 118 12 0 1 118 1 118 2.61e-74 225
Msa0402460 MtrunA17_Chr1g0210271 88.596 114 12 1 242 354 1 114 4.54e-70 214
Msa0402460 MtrunA17_Chr3g0087491 27.273 330 197 8 25 353 1 288 1.79e-25 103
Msa0402460 MtrunA17_Chr8g0360141 26.349 315 187 9 25 336 1 273 3.26e-21 92.4
Msa0402460 MtrunA17_Chr3g0093841 32.520 123 82 1 19 141 190 311 9.24e-16 78.6
Msa0402460 MtrunA17_Chr3g0093841 25.000 252 170 5 19 257 516 761 8.25e-15 75.9
Msa0402460 MtrunA17_Chr3g0093841 32.308 130 87 1 21 150 27 155 4.65e-14 73.6
Msa0402460 MtrunA17_Chr3g0093841 31.034 145 94 3 16 155 344 487 1.80e-13 71.6
Msa0402460 MtrunA17_Chr8g0360271 29.921 127 88 1 21 147 13 138 5.51e-15 74.7
Msa0402460 MtrunA17_Chr8g0354231 24.878 205 146 4 5 203 7 209 1.22e-14 73.6
Msa0402460 MtrunA17_Chr8g0334551 28.966 145 98 2 1 140 1 145 1.51e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402460 AT4G02550.1 26.562 192 138 3 10 200 12 201 3.76e-16 78.6
Msa0402460 AT4G02550.5 26.562 192 138 3 10 200 12 201 3.76e-16 78.6
Msa0402460 AT4G02550.3 26.562 192 138 3 10 200 27 216 5.10e-16 78.2
Msa0402460 AT4G02550.2 28.369 141 98 3 10 149 12 150 9.83e-15 73.9
Msa0402460 AT4G02550.4 28.369 141 98 3 10 149 12 150 9.83e-15 73.9
Msa0402460 AT5G27260.1 28.000 150 100 3 6 150 2 148 1.02e-11 65.5
Msa0402460 AT4G02210.1 27.068 133 95 2 21 152 14 145 8.45e-11 63.5
Msa0402460 AT4G02210.2 27.068 133 95 2 21 152 14 145 8.45e-11 63.5

Find 168 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAACTAAATGCATTTAT+AGG 0.171784 3_2:+30662081 Msa0402460:five_prime_UTR
TGTTTCAATTGATAAATATT+TGG 0.173013 3_2:+30661946 Msa0402460:five_prime_UTR
CATGAGATAATGTAGTTTAT+TGG 0.233703 3_2:+30661850 Msa0402460:five_prime_UTR
TAACCTTCAGGAATTATTAA+AGG 0.236537 3_2:-30661270 None:intergenic
GCCAACTATGGCATTTCTTA+TGG 0.249341 3_2:+30663501 Msa0402460:three_prime_UTR
ACCGACTAGGATCGCTTCTT+AGG 0.268580 3_2:+30661774 Msa0402460:five_prime_UTR
AATATTATTGAATGCTTTGA+TGG 0.286306 3_2:+30662191 Msa0402460:CDS
TTGCATTCCATACTTGCATT+AGG 0.292438 3_2:+30660850 Msa0402460:five_prime_UTR
TGCATTCCATACTTGCATTA+GGG 0.300018 3_2:+30660851 Msa0402460:five_prime_UTR
CTTCATCATGCTGTTGTGTT+TGG 0.300163 3_2:-30661748 None:intergenic
TTTGGTGGCTTGAGCGGATT+TGG 0.332495 3_2:+30662378 Msa0402460:CDS
GCCCACTGACATGCGCTTAC+AGG 0.333367 3_2:+30663228 Msa0402460:CDS
CCTCACTCATCCTCCAAGTT+TGG 0.333782 3_2:+30658051 Msa0402460:five_prime_UTR
TTCTTCCCCTAATGCAAGTA+TGG 0.336535 3_2:-30660857 None:intergenic
CAATATGTAGTTGCCACTTT+AGG 0.336604 3_2:+30663421 Msa0402460:three_prime_UTR
TCAGTGCCACTAGCTATAAT+TGG 0.339150 3_2:-30661584 None:intergenic
TTTCTACCATTGATGTTGTT+TGG 0.346439 3_2:+30663276 Msa0402460:exon
AATGACCCAAAGGAATAAAA+AGG 0.346566 3_2:-30658023 None:intergenic
CTTAAGGTGGACTGATGATA+TGG 0.352770 3_2:+30662164 Msa0402460:CDS
GGTGAAGCGTATGATCTATT+TGG 0.355252 3_2:+30662360 Msa0402460:CDS
CTTATAAGTTCTTCCCAAAC+TGG 0.355871 3_2:-30662438 None:intergenic
TTCATCATGCTGTTGTGTTT+GGG 0.356496 3_2:-30661747 None:intergenic
ATGTTACAAGGCATAATTAA+AGG 0.367451 3_2:-30663359 None:intergenic
TACGGCTGAGGAACCAGTTT+GGG 0.367849 3_2:+30662425 Msa0402460:CDS
TGATAACGAACTCCTCTATA+TGG 0.368095 3_2:-30661446 None:intergenic
AAAACTTTGAAAGATCGTTT+TGG 0.370453 3_2:+30662339 Msa0402460:CDS
AACGTCATTGAGAGAACTTT+TGG 0.372184 3_2:+30661542 Msa0402460:five_prime_UTR
AACCTTCAGGAATTATTAAA+GGG 0.377913 3_2:-30661269 None:intergenic
AAACGAGGGGCTTCTGCCCT+TGG 0.380938 3_2:-30661108 None:intergenic
CATCATGCCTATTCCCTTTG+TGG 0.385222 3_2:-30662221 None:intergenic
CTGCTATTGTTTAGTATTTG+TGG 0.387161 3_2:-30660913 None:intergenic
TTCAACAACTAGGAGGTTTA+CGG 0.401340 3_2:+30662407 Msa0402460:CDS
GCAAAATTCTTGCATATTGT+AGG 0.403388 3_2:+30660748 Msa0402460:five_prime_UTR
TGCAGGTCCATCACCAAACT+TGG 0.409807 3_2:-30658064 None:intergenic
CACAGCTGCATGAATGCTTC+AGG 0.414144 3_2:-30660661 None:intergenic
GCCTCCACAAAATCATTCAT+TGG 0.424130 3_2:-30662911 None:intergenic
CACCACATCAAGACTAGATC+TGG 0.426214 3_2:+30658122 Msa0402460:five_prime_UTR
ACAGGTTCTCTTACAAATGA+TGG 0.427079 3_2:+30663246 Msa0402460:CDS
GACTCATACAGTCCAACATA+TGG 0.427529 3_2:+30662833 Msa0402460:CDS
GGTGGGAGGAGAGGAAGCGC+GGG 0.427545 3_2:-30658002 None:intergenic
CATCAATCCATAGGAACATC+TGG 0.432387 3_2:+30662863 Msa0402460:CDS
AACGAGGGGCTTCTGCCCTT+GGG 0.438842 3_2:-30661107 None:intergenic
ACCATAAGAAATGCCATAGT+TGG 0.439383 3_2:-30663502 None:intergenic
TGACGTCTATGCTCACTTTG+TGG 0.444260 3_2:-30660580 None:intergenic
ATGCTCACTTTGTGGAGAAT+AGG 0.448985 3_2:-30660572 None:intergenic
AAGAGGTCCACAAAGGGAAT+AGG 0.450550 3_2:+30662214 Msa0402460:CDS
TTACGGCTGAGGAACCAGTT+TGG 0.457592 3_2:+30662424 Msa0402460:CDS
AAAATACTTGCCATGTTACA+AGG 0.470518 3_2:-30663371 None:intergenic
GTCATGTAAGTATCATCAGC+TGG 0.473268 3_2:-30662761 None:intergenic
CACTTACGTGTTAGCCGGGT+GGG 0.476618 3_2:+30661194 Msa0402460:five_prime_UTR
GATTGCATTGGAGCTATAGA+TGG 0.476705 3_2:+30661063 Msa0402460:five_prime_UTR
AACTAGGAGGTTTACGGCTG+AGG 0.477534 3_2:+30662413 Msa0402460:CDS
ATCATAATGCTTAACTTGCA+TGG 0.479752 3_2:-30662603 None:intergenic
GTTGGAGAAGGAAAGGGAAA+AGG 0.480190 3_2:+30662700 Msa0402460:CDS
TTGGTTGGAGAGAAATAAGA+AGG 0.482021 3_2:+30657772 Msa0402460:five_prime_UTR
TGTATACAGGAGCAGATGTA+TGG 0.482734 3_2:+30663107 Msa0402460:CDS
GATAGATCAAGAGAAGTTGC+AGG 0.482833 3_2:-30658081 None:intergenic
TGTCGGGACATCATACGAAT+GGG 0.483003 3_2:+30660637 Msa0402460:five_prime_UTR
TTTGGGGAAGACCGAGCAGC+AGG 0.485707 3_2:+30662641 Msa0402460:CDS
AAATTCACTTACGTGTTAGC+CGG 0.486870 3_2:+30661189 Msa0402460:five_prime_UTR
TGATGTGATTTCCCATATGT+TGG 0.488779 3_2:-30662845 None:intergenic
TGTAGACCTCGAGTGTATAC+AGG 0.492746 3_2:+30663094 Msa0402460:CDS
GATAGAATGACGAGTGGCAT+TGG 0.493232 3_2:+30662941 Msa0402460:CDS
CAGCTGTGTCTAAAACTAAG+AGG 0.496642 3_2:+30660676 Msa0402460:five_prime_UTR
ATCTGGAAACTACAAATCAT+AGG 0.498111 3_2:+30658139 Msa0402460:five_prime_UTR
CCGACTAGGATCGCTTCTTA+GGG 0.499781 3_2:+30661775 Msa0402460:five_prime_UTR
TTTGATTCAAATACAATGCA+TGG 0.500520 3_2:-30660519 None:intergenic
ATTGAATGCTTTGATGGAAG+AGG 0.501757 3_2:+30662197 Msa0402460:CDS
ATGGAATATGCTTGATGAGT+TGG 0.501804 3_2:+30663126 Msa0402460:CDS
GAATTTATAGTCCAACCATC+AGG 0.506876 3_2:+30660877 Msa0402460:five_prime_UTR
GATCTATTTGGTGGCTTGAG+CGG 0.507205 3_2:+30662372 Msa0402460:CDS
TCGAAGGTTGAATAACTCTC+GGG 0.508448 3_2:-30661504 None:intergenic
AAGCTGCTAAGGACGTCTTA+AGG 0.512859 3_2:+30662148 Msa0402460:CDS
GTCGAAGGTTGAATAACTCT+CGG 0.514941 3_2:-30661505 None:intergenic
AGGTGGGAGGAGAGGAAGCG+CGG 0.515767 3_2:-30658003 None:intergenic
CTACTGTCAATTGCCTAAAG+TGG 0.518019 3_2:-30663434 None:intergenic
GCGAGAACCAGATGTTCCTA+TGG 0.520724 3_2:-30662870 None:intergenic
TGTCTAAAACTAAGAGGTAC+GGG 0.523672 3_2:+30660682 Msa0402460:five_prime_UTR
ATAGAAAGGAGGCAACATAT+TGG 0.524884 3_2:+30660469 Msa0402460:five_prime_UTR
TTTAATTATGCCTTGTAACA+TGG 0.525070 3_2:+30663361 Msa0402460:three_prime_UTR
CGTGCTGATATACTTGATGA+AGG 0.525531 3_2:+30662791 Msa0402460:CDS
TCTCTCAACAGCGAAGAAAG+TGG 0.526671 3_2:+30657910 Msa0402460:five_prime_UTR
ACTGAAATGTGGAACCTGTA+TGG 0.528593 3_2:+30661809 Msa0402460:five_prime_UTR
AAGATACCAAACAACATCAA+TGG 0.532219 3_2:-30663282 None:intergenic
ACCTGTAAGCGCATGTCAGT+GGG 0.533559 3_2:-30663229 None:intergenic
GTGTCTAAAACTAAGAGGTA+CGG 0.537028 3_2:+30660681 Msa0402460:five_prime_UTR
ACGTCCTTAGCAGCTTGTCT+AGG 0.537394 3_2:-30662141 None:intergenic
AACTACATTAAGCTCCATAC+AGG 0.537498 3_2:-30661823 None:intergenic
GGACATCGGCACCTGATGGT+TGG 0.538969 3_2:-30660888 None:intergenic
AAGAGAGAAGACTGCAGCGT+GGG 0.539887 3_2:+30657866 Msa0402460:five_prime_UTR
GACGAGTGGCATTGGACTCA+TGG 0.542017 3_2:+30662949 Msa0402460:CDS
ACAATCAGTTGGAGAAGGAA+AGG 0.542959 3_2:+30662693 Msa0402460:CDS
TAGTATTTGTGGTGGGACAT+CGG 0.543671 3_2:-30660902 None:intergenic
GTGGCTTGAGCGGATTTGGA+TGG 0.545278 3_2:+30662382 Msa0402460:CDS
TTCCAGATCTAGTCTTGATG+TGG 0.545939 3_2:-30658124 None:intergenic
AATTCACTTACGTGTTAGCC+GGG 0.546524 3_2:+30661190 Msa0402460:five_prime_UTR
TAAGCATTATGATGTTCTGA+AGG 0.547520 3_2:+30662613 Msa0402460:CDS
TCATCCTCCAAGTTTGGTGA+TGG 0.548237 3_2:+30658057 Msa0402460:five_prime_UTR
CAATCAGTTGGAGAAGGAAA+GGG 0.549805 3_2:+30662694 Msa0402460:CDS
ACATAGTGTAAAAGAGACAT+TGG 0.550941 3_2:-30657749 None:intergenic
TAAAATGAGACACAATCAGT+TGG 0.551034 3_2:+30662682 Msa0402460:CDS
ACTCATACAGTCCAACATAT+GGG 0.551310 3_2:+30662834 Msa0402460:CDS
GACCCTTTAATAATTCCTGA+AGG 0.553305 3_2:+30661267 Msa0402460:five_prime_UTR
GGGTTACTAACTCCATATAG+AGG 0.553737 3_2:+30661434 Msa0402460:five_prime_UTR
AAGAGGTACGGGTATAGTAA+AGG 0.555417 3_2:+30660693 Msa0402460:five_prime_UTR
CTATGAAATAAGGATTGCAT+TGG 0.556238 3_2:+30661051 Msa0402460:intron
GTCTACTGTAGAAGAGCAAG+TGG 0.558463 3_2:+30660726 Msa0402460:five_prime_UTR
TGATGGAAGAGGTCCACAAA+GGG 0.560951 3_2:+30662208 Msa0402460:CDS
GTGTCGGGACATCATACGAA+TGG 0.561288 3_2:+30660636 Msa0402460:five_prime_UTR
ACCTTCGACACTCTTCACTT+CGG 0.561876 3_2:+30661519 Msa0402460:five_prime_UTR
CGGGATTTATGCTTAAACAA+GGG 0.562360 3_2:+30661414 Msa0402460:five_prime_UTR
CTATTGTTTAGTATTTGTGG+TGG 0.564348 3_2:-30660910 None:intergenic
TAAAACCACATGCTGCTAAG+TGG 0.566316 3_2:+30662576 Msa0402460:CDS
AGATTTCCAATTATAGCTAG+TGG 0.571282 3_2:+30661578 Msa0402460:five_prime_UTR
TATTGTTTAGTATTTGTGGT+GGG 0.571530 3_2:-30660909 None:intergenic
AACCTGTAAGCGCATGTCAG+TGG 0.571901 3_2:-30663230 None:intergenic
TTGAAAGAGTATTCCTCTCG+TGG 0.572856 3_2:+30661470 Msa0402460:five_prime_UTR
TACGTGTTAGCCGGGTGGGA+AGG 0.575936 3_2:+30661198 Msa0402460:five_prime_UTR
CACAAAGGGAATAGGCATGA+TGG 0.577973 3_2:+30662222 Msa0402460:CDS
AGAACCTAGACAAGCTGCTA+AGG 0.578684 3_2:+30662137 Msa0402460:CDS
GGGAAATCACATCAATCCAT+AGG 0.580859 3_2:+30662854 Msa0402460:CDS
TTCTGATCAATTGCATGATG+TGG 0.582187 3_2:+30663000 Msa0402460:CDS
GCGGGATTTATGCTTAAACA+AGG 0.582707 3_2:+30661413 Msa0402460:five_prime_UTR
TTGGATGGAATTCAACAACT+AGG 0.583860 3_2:+30662397 Msa0402460:CDS
CATGATGAAGACTACCGACT+AGG 0.590825 3_2:+30661761 Msa0402460:five_prime_UTR
GCATTCCATACTTGCATTAG+GGG 0.591773 3_2:+30660852 Msa0402460:five_prime_UTR
CCCTAAGAAGCGATCCTAGT+CGG 0.592042 3_2:-30661775 None:intergenic
ATTATCTGCACGACAAGTTG+CGG 0.592600 3_2:+30663039 Msa0402460:CDS
GAGACACAATCAGTTGGAGA+AGG 0.594765 3_2:+30662688 Msa0402460:CDS
ACATTCGAGTGAAGGTCCCA+AGG 0.594966 3_2:+30661091 Msa0402460:five_prime_UTR
TTCTCGCGGAACAAAGCGTA+AGG 0.595584 3_2:+30662886 Msa0402460:CDS
AGTGCACACAGATAAGTGTC+GGG 0.599113 3_2:+30660621 Msa0402460:five_prime_UTR
TCCGAAGTGAAGAGTGTCGA+AGG 0.603229 3_2:-30661520 None:intergenic
GGTGCTGTAGAGATCTAAGA+AGG 0.604796 3_2:-30658103 None:intergenic
TAGTGCACACAGATAAGTGT+CGG 0.605090 3_2:+30660620 Msa0402460:five_prime_UTR
GAAGCGTATGATCTATTTGG+TGG 0.608000 3_2:+30662363 Msa0402460:CDS
TGAGGAAGATAATGACCCAA+AGG 0.608100 3_2:-30658033 None:intergenic
ATATGTAATGAGGACACATC+TGG 0.611084 3_2:+30663334 Msa0402460:three_prime_UTR
ATGGCTGATGCGTTGAACAA+AGG 0.612392 3_2:+30662968 Msa0402460:CDS
TCATGTAAGTATCATCAGCT+GGG 0.614286 3_2:-30662760 None:intergenic
GGACTGTATGAGTCAACAAT+GGG 0.614523 3_2:-30662824 None:intergenic
CTGCTAAGGACGTCTTAAGG+TGG 0.616841 3_2:+30662151 Msa0402460:CDS
TGAAAGAGTATTCCTCTCGT+GGG 0.617564 3_2:+30661471 Msa0402460:five_prime_UTR
TAGCACTTGAAACGAAATTG+TGG 0.618265 3_2:-30663157 None:intergenic
AGGTCCATCACCAAACTTGG+AGG 0.619724 3_2:-30658061 None:intergenic
TGGCACACACATTCGAGTGA+AGG 0.621290 3_2:+30661083 Msa0402460:five_prime_UTR
AATTAATGTGATATGCATTG+TGG 0.623664 3_2:+30662045 Msa0402460:five_prime_UTR
AAGCTATTACAACTGAAATG+TGG 0.624802 3_2:+30661798 Msa0402460:five_prime_UTR
GGTGGGACATCGGCACCTGA+TGG 0.625453 3_2:-30660892 None:intergenic
CATTCGAGTGAAGGTCCCAA+GGG 0.627188 3_2:+30661092 Msa0402460:five_prime_UTR
TCACTTACGTGTTAGCCGGG+TGG 0.637458 3_2:+30661193 Msa0402460:five_prime_UTR
GATGGAATTCAACAACTAGG+AGG 0.638082 3_2:+30662400 Msa0402460:CDS
GTGCTGATATACTTGATGAA+GGG 0.638722 3_2:+30662792 Msa0402460:CDS
TGCAAGTATGGAATGCAACA+CGG 0.644612 3_2:-30660845 None:intergenic
ATAGGAACATCTGGTTCTCG+CGG 0.649638 3_2:+30662872 Msa0402460:CDS
CCAAACTTGGAGGATGAGTG+AGG 0.653884 3_2:-30658051 None:intergenic
TTGATGGAAGAGGTCCACAA+AGG 0.657995 3_2:+30662207 Msa0402460:CDS
GAAGAGAGAAGACTGCAGCG+TGG 0.666341 3_2:+30657865 Msa0402460:five_prime_UTR
ATTACTTCAAGTGAATAATG+CGG 0.666923 3_2:-30661608 None:intergenic
TGGACTGTATGAGTCAACAA+TGG 0.667564 3_2:-30662825 None:intergenic
CGAAGGTTGAATAACTCTCG+GGG 0.668950 3_2:-30661503 None:intergenic
AGATGCTGTTCCTTCCCACC+CGG 0.669494 3_2:-30661208 None:intergenic
TGATGAAGCACTAATTGCTG+AGG 0.680304 3_2:+30661688 Msa0402460:five_prime_UTR
GAAAGTGGAGAGAAACACAC+TGG 0.686277 3_2:+30657925 Msa0402460:five_prime_UTR
GTCGGGACATCATACGAATG+GGG 0.688822 3_2:+30660638 Msa0402460:five_prime_UTR
CAATTGGATAGAATGACGAG+TGG 0.698679 3_2:+30662935 Msa0402460:CDS
CATCAAGTATATCAGCACGC+TGG 0.698851 3_2:-30662787 None:intergenic
TCTGCTCCTGTATACACTCG+AGG 0.699341 3_2:-30663100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATGATTGTTATAATTA+CGG + chr3_2:30658622-30658641 Msa0402460:intron 10.0%
!! TAAAATTTATACATATTAGT+TGG + chr3_2:30659521-30659540 Msa0402460:intron 10.0%
!! TTTATGATTGTTATAATTAC+GGG + chr3_2:30658623-30658642 Msa0402460:intron 15.0%
!! TTAATGTAATAATTTACTCT+CGG - chr3_2:30658727-30658746 None:intergenic 15.0%
!! TGTATAAATTCAAAATTTCT+AGG - chr3_2:30658768-30658787 None:intergenic 15.0%
!!! GTACCATTATATTTTTTTTA+AGG + chr3_2:30660955-30660974 Msa0402460:intron 15.0%
!! ATGCCTTAAAAAAAATATAA+TGG - chr3_2:30660961-30660980 None:intergenic 15.0%
!!! TATACTTCATAACTTTTTAA+TGG + chr3_2:30661655-30661674 Msa0402460:five_prime_UTR 15.0%
!!! ATACTTCATAACTTTTTAAT+GGG + chr3_2:30661656-30661675 Msa0402460:five_prime_UTR 15.0%
!! TGTTTCAATTGATAAATATT+TGG + chr3_2:30661946-30661965 Msa0402460:five_prime_UTR 15.0%
!! TTTGTTTCATTTATTAATTG+TGG + chr3_2:30662472-30662491 Msa0402460:intron 15.0%
!! TGTTGTTGATCTTATATAAA+AGG + chr3_2:30658231-30658250 Msa0402460:intron 20.0%
!!! GTTCAATTTTAAGAATCAAT+TGG + chr3_2:30658404-30658423 Msa0402460:intron 20.0%
!!! AAATTCAAAATTTCTAGGAA+AGG - chr3_2:30658763-30658782 None:intergenic 20.0%
!! TGGTGTTCAATTTATAATTA+AGG - chr3_2:30658987-30659006 None:intergenic 20.0%
!! AAATCCATATCAATAATATG+AGG - chr3_2:30659066-30659085 None:intergenic 20.0%
!! AAACATCTAACAAATTACAA+GGG - chr3_2:30659091-30659110 None:intergenic 20.0%
!! AAAACATCTAACAAATTACA+AGG - chr3_2:30659092-30659111 None:intergenic 20.0%
!!! TTTAGTTTCAGATTTGTAAT+TGG - chr3_2:30659465-30659484 None:intergenic 20.0%
!! GAATTATAATGAAGTAAACA+AGG + chr3_2:30659790-30659809 Msa0402460:intron 20.0%
!! AAGATCTAAACAAAATACAA+TGG - chr3_2:30659836-30659855 None:intergenic 20.0%
!!! TTTATAGCTTTGTTTTCAAT+GGG + chr3_2:30660013-30660032 Msa0402460:intron 20.0%
!! TTAACAGCATAGATTTATTA+AGG - chr3_2:30660116-30660135 None:intergenic 20.0%
!!! TGCTGTTAAAAAAAAAGTTT+TGG + chr3_2:30660127-30660146 Msa0402460:intron 20.0%
!!! GCTGTTAAAAAAAAAGTTTT+GGG + chr3_2:30660128-30660147 Msa0402460:intron 20.0%
!! AATTGAAATAATAGATGAAG+TGG + chr3_2:30660372-30660391 Msa0402460:intron 20.0%
!!! CAGATTTTATCCATTTTTTA+AGG + chr3_2:30660933-30660952 Msa0402460:five_prime_UTR 20.0%
!! TATAATGGTACCTTAAAAAA+TGG - chr3_2:30660946-30660965 None:intergenic 20.0%
!! TGATTTAGTTAGTTGTATAA+GGG - chr3_2:30661030-30661049 None:intergenic 20.0%
!! ATGATTTAGTTAGTTGTATA+AGG - chr3_2:30661031-30661050 None:intergenic 20.0%
!! ACTAAATCATCTATGAAATA+AGG + chr3_2:30661041-30661060 Msa0402460:intron 20.0%
!! TTCATCTATCGATAAATATT+TGG + chr3_2:30661982-30662001 Msa0402460:intron 20.0%
!! TTGAAACTAAATGCATTTAT+AGG + chr3_2:30662081-30662100 Msa0402460:five_prime_UTR 20.0%
!! AATATTATTGAATGCTTTGA+TGG + chr3_2:30662191-30662210 Msa0402460:CDS 20.0%
!!! TTTTATGTGTTGTTTTGTTA+TGG - chr3_2:30662310-30662329 None:intergenic 20.0%
!!! ATTTCTAGGAAATAAAATGA+AGG - chr3_2:30662501-30662520 None:intergenic 20.0%
!! AATATACATTGTGTATTTCT+AGG - chr3_2:30662515-30662534 None:intergenic 20.0%
!!! TTTTTTGTGTATATGTAATG+AGG + chr3_2:30663324-30663343 Msa0402460:three_prime_UTR 20.0%
!!! TGGTATAATTATTTTGTGTT+AGG + chr3_2:30663479-30663498 Msa0402460:three_prime_UTR 20.0%
! TGAGATTATCCTTTGTAAAT+TGG + chr3_2:30658340-30658359 Msa0402460:intron 25.0%
! GAGATTATCCTTTGTAAATT+GGG + chr3_2:30658341-30658360 Msa0402460:intron 25.0%
!! AATCAATTGGATTAGAATGT+TGG + chr3_2:30658417-30658436 Msa0402460:intron 25.0%
! TACATCAAAACATTAGAACA+AGG - chr3_2:30658541-30658560 None:intergenic 25.0%
!! TTATACATTACACAGTTTTG+TGG + chr3_2:30658781-30658800 Msa0402460:intron 25.0%
! TCAACCTCATATTATTGATA+TGG + chr3_2:30659059-30659078 Msa0402460:intron 25.0%
!! TTTTCACAAAATGATTCAAG+CGG + chr3_2:30659109-30659128 Msa0402460:intron 25.0%
! AATATACAATACAGAAAGCA+AGG - chr3_2:30659191-30659210 None:intergenic 25.0%
! CAAATTGTATGTTCTCTTAA+TGG - chr3_2:30659218-30659237 None:intergenic 25.0%
!!! TTTAGGATATTGTTTTCTGT+TGG - chr3_2:30659405-30659424 None:intergenic 25.0%
!!! ATTTTAATTGTGATTGCTCT+TGG - chr3_2:30659507-30659526 None:intergenic 25.0%
!! ATACATATTAGTTGGTATCT+TGG + chr3_2:30659529-30659548 Msa0402460:intron 25.0%
! AATAGTTTGAACCATGAAAA+AGG + chr3_2:30659732-30659751 Msa0402460:intron 25.0%
! TACTTCATTATAATTCTGTG+TGG - chr3_2:30659786-30659805 None:intergenic 25.0%
! CTAACAACATGAAGAAAAAA+AGG - chr3_2:30659859-30659878 None:intergenic 25.0%
!!! GTTTATAGCTTTGTTTTCAA+TGG + chr3_2:30660012-30660031 Msa0402460:intron 25.0%
!!! TTTTGTTTCTGTACTGTTTT+TGG + chr3_2:30660052-30660071 Msa0402460:intron 25.0%
! CCAATATAGAGTAGATAAAA+AGG - chr3_2:30660237-30660256 None:intergenic 25.0%
!! CCTTTTTATCTACTCTATAT+TGG + chr3_2:30660234-30660253 Msa0402460:intron 25.0%
! ATGCTAAAAAAGAGATAGAA+AGG + chr3_2:30660455-30660474 Msa0402460:five_prime_UTR 25.0%
! TTTGATTCAAATACAATGCA+TGG - chr3_2:30660522-30660541 None:intergenic 25.0%
!! ATCTTTCTTCTTTTATCGTT+CGG + chr3_2:30660795-30660814 Msa0402460:five_prime_UTR 25.0%
! TATTGTTTAGTATTTGTGGT+GGG - chr3_2:30660912-30660931 None:intergenic 25.0%
! TGTATAAGGGATATACTTAA+AGG - chr3_2:30661017-30661036 None:intergenic 25.0%
! AACCTTCAGGAATTATTAAA+GGG - chr3_2:30661272-30661291 None:intergenic 25.0%
! TAACCTTCAGGAATTATTAA+AGG - chr3_2:30661273-30661292 None:intergenic 25.0%
!!! TTTGTAGGAAAGTTTTATCT+CGG + chr3_2:30661386-30661405 Msa0402460:intron 25.0%
! ATTACTTCAAGTGAATAATG+CGG - chr3_2:30661611-30661630 None:intergenic 25.0%
! CATGAGATAATGTAGTTTAT+TGG + chr3_2:30661850-30661869 Msa0402460:five_prime_UTR 25.0%
! AATTAATGTGATATGCATTG+TGG + chr3_2:30662045-30662064 Msa0402460:five_prime_UTR 25.0%
!! TGCATTTATAGGTTGAAAAA+TGG + chr3_2:30662092-30662111 Msa0402460:exon 25.0%
!!! AAAACTTTGAAAGATCGTTT+TGG + chr3_2:30662339-30662358 Msa0402460:CDS 25.0%
!! ATCTTTTTGTGTCATGTATA+TGG + chr3_2:30663300-30663319 Msa0402460:three_prime_UTR 25.0%
! ATGTTACAAGGCATAATTAA+AGG - chr3_2:30663362-30663381 None:intergenic 25.0%
! TTTAATTATGCCTTGTAACA+TGG + chr3_2:30663361-30663380 Msa0402460:three_prime_UTR 25.0%
ACATAGTGTAAAAGAGACAT+TGG - chr3_2:30657752-30657771 None:intergenic 30.0%
! TGTCTCTTTTACACTATGTT+TGG + chr3_2:30657753-30657772 Msa0402460:five_prime_UTR 30.0%
! TCTTTTACACTATGTTTGGT+TGG + chr3_2:30657757-30657776 Msa0402460:five_prime_UTR 30.0%
! GACACTGAATTTCTTTTGTT+TGG + chr3_2:30657826-30657845 Msa0402460:five_prime_UTR 30.0%
!! AGAAGAAAGAGATTTTGAGT+GGG - chr3_2:30657893-30657912 None:intergenic 30.0%
AAAAAGAAAAGGGCAAAAGA+GGG - chr3_2:30657964-30657983 None:intergenic 30.0%
AATGACCCAAAGGAATAAAA+AGG - chr3_2:30658026-30658045 None:intergenic 30.0%
ATCTGGAAACTACAAATCAT+AGG + chr3_2:30658139-30658158 Msa0402460:five_prime_UTR 30.0%
GAAACTACAAATCATAGGTA+TGG + chr3_2:30658144-30658163 Msa0402460:intron 30.0%
CATTTCAACCCAATTTACAA+AGG - chr3_2:30658352-30658371 None:intergenic 30.0%
! AATTGGATTAGAATGTTGGA+GGG + chr3_2:30658421-30658440 Msa0402460:intron 30.0%
!!! TTTTTGAGTCATTCGAATCT+AGG - chr3_2:30658470-30658489 None:intergenic 30.0%
TGACTCAAAAAACCAATGAA+TGG + chr3_2:30658479-30658498 Msa0402460:intron 30.0%
AACTGTCAACGTATACTTTA+GGG - chr3_2:30658510-30658529 None:intergenic 30.0%
AAACTGTCAACGTATACTTT+AGG - chr3_2:30658511-30658530 None:intergenic 30.0%
! TGATTTCTTTTTCTTGAGCT+TGG + chr3_2:30658674-30658693 Msa0402460:intron 30.0%
! TACTTGTTAAATCGTTAGCT+TGG + chr3_2:30658929-30658948 Msa0402460:intron 30.0%
CCTCTCACAAACTAAAAAAA+TGG - chr3_2:30659007-30659026 None:intergenic 30.0%
!!! CCATTTTTTTAGTTTGTGAG+AGG + chr3_2:30659004-30659023 Msa0402460:intron 30.0%
AGAAACATGAATTCATTTGC+AGG - chr3_2:30659153-30659172 None:intergenic 30.0%
TCAATCATGAGTTAGAAGAA+TGG - chr3_2:30659316-30659335 None:intergenic 30.0%
!! GATATTGTTTTCTGTTGGTT+CGG - chr3_2:30659400-30659419 None:intergenic 30.0%
AGATTAGAGTATGAAGTAGT+TGG + chr3_2:30659639-30659658 Msa0402460:intron 30.0%
AGTAATAGCAACCAAACAAA+TGG + chr3_2:30659698-30659717 Msa0402460:intron 30.0%
ACATCTCAATTCCATTTGTT+TGG - chr3_2:30659712-30659731 None:intergenic 30.0%
TTTGGTTGTTATATGGTGTT+TGG + chr3_2:30659948-30659967 Msa0402460:intron 30.0%
CTATGTATCTGTCATTCATA+TGG + chr3_2:30659979-30659998 Msa0402460:intron 30.0%
ACAGTACAGAAACAAAACAA+GGG - chr3_2:30660049-30660068 None:intergenic 30.0%
AACAGTACAGAAACAAAACA+AGG - chr3_2:30660050-30660069 None:intergenic 30.0%
AGACATGATCAAATAGCAAA+AGG - chr3_2:30660080-30660099 None:intergenic 30.0%
! AATAATAGATGAAGTGGACT+TGG + chr3_2:30660378-30660397 Msa0402460:intron 30.0%
GAAGATGAAATGATTGATGT+TGG + chr3_2:30660403-30660422 Msa0402460:intron 30.0%
CTAAAAAAGAGATAGAAAGG+AGG + chr3_2:30660458-30660477 Msa0402460:five_prime_UTR 30.0%
GCAAAATTCTTGCATATTGT+AGG + chr3_2:30660748-30660767 Msa0402460:five_prime_UTR 30.0%
! TCTTTCTTCTTTTATCGTTC+GGG + chr3_2:30660796-30660815 Msa0402460:five_prime_UTR 30.0%
CTATTGTTTAGTATTTGTGG+TGG - chr3_2:30660913-30660932 None:intergenic 30.0%
CTGCTATTGTTTAGTATTTG+TGG - chr3_2:30660916-30660935 None:intergenic 30.0%
CTATGAAATAAGGATTGCAT+TGG + chr3_2:30661051-30661070 Msa0402460:intron 30.0%
TAATAATTCCTGAAGGTTAG+TGG + chr3_2:30661274-30661293 Msa0402460:intron 30.0%
!! TTGTAGGAAAGTTTTATCTC+GGG + chr3_2:30661387-30661406 Msa0402460:intron 30.0%
AGATTTCCAATTATAGCTAG+TGG + chr3_2:30661578-30661597 Msa0402460:five_prime_UTR 30.0%
! TCATAACTTTTTAATGGGAG+TGG + chr3_2:30661661-30661680 Msa0402460:five_prime_UTR 30.0%
AAGCTATTACAACTGAAATG+TGG + chr3_2:30661798-30661817 Msa0402460:five_prime_UTR 30.0%
! TATAGGTTGAAAAATGGCAA+AGG + chr3_2:30662098-30662117 Msa0402460:exon 30.0%
TGAAAAATGGCAAAGGATAA+AGG + chr3_2:30662105-30662124 Msa0402460:exon 30.0%
!! ATCATAATGCTTAACTTGCA+TGG - chr3_2:30662606-30662625 None:intergenic 30.0%
TAAGCATTATGATGTTCTGA+AGG + chr3_2:30662613-30662632 Msa0402460:CDS 30.0%
!!! ATGTTCTGAAGGTTCTTTTT+GGG + chr3_2:30662624-30662643 Msa0402460:CDS 30.0%
TAAAATGAGACACAATCAGT+TGG + chr3_2:30662682-30662701 Msa0402460:CDS 30.0%
TTGCAATGATAGCAAAAAGA+AGG + chr3_2:30663189-30663208 Msa0402460:CDS 30.0%
!! AAAAAGAAGGAGCTGATTTT+TGG + chr3_2:30663202-30663221 Msa0402460:CDS 30.0%
TTTCTACCATTGATGTTGTT+TGG + chr3_2:30663276-30663295 Msa0402460:exon 30.0%
AAGATACCAAACAACATCAA+TGG - chr3_2:30663285-30663304 None:intergenic 30.0%
AAAATACTTGCCATGTTACA+AGG - chr3_2:30663374-30663393 None:intergenic 30.0%
!!! AGTATTTTGAAACATGCAGT+AGG + chr3_2:30663386-30663405 Msa0402460:three_prime_UTR 30.0%
!!! GTATTTTGAAACATGCAGTA+GGG + chr3_2:30663387-30663406 Msa0402460:three_prime_UTR 30.0%
TTGGTTGGAGAGAAATAAGA+AGG + chr3_2:30657772-30657791 Msa0402460:five_prime_UTR 35.0%
!! GAAGAAAGAGATTTTGAGTG+GGG - chr3_2:30657892-30657911 None:intergenic 35.0%
! GAGAAGAAAGAGATTTTGAG+TGG - chr3_2:30657894-30657913 None:intergenic 35.0%
CAAAAAGAAAAGGGCAAAAG+AGG - chr3_2:30657965-30657984 None:intergenic 35.0%
! CTCTTTTGCCCTTTTCTTTT+TGG + chr3_2:30657963-30657982 Msa0402460:five_prime_UTR 35.0%
CGCGAAAACCAAAAAGAAAA+GGG - chr3_2:30657974-30657993 None:intergenic 35.0%
!!! CCTTTTCTTTTTGGTTTTCG+CGG + chr3_2:30657972-30657991 Msa0402460:five_prime_UTR 35.0%
! TCCCACCTTTTTATTCCTTT+GGG + chr3_2:30658018-30658037 Msa0402460:five_prime_UTR 35.0%
ACCCAAAGGAATAAAAAGGT+GGG - chr3_2:30658022-30658041 None:intergenic 35.0%
! CAATTGGATTAGAATGTTGG+AGG + chr3_2:30658420-30658439 Msa0402460:intron 35.0%
TTTAGGGGTAATCCATTCAT+TGG - chr3_2:30658494-30658513 None:intergenic 35.0%
ACTGTCAACGTATACTTTAG+GGG - chr3_2:30658509-30658528 None:intergenic 35.0%
GTAGATGTGACTTGAACTTT+AGG + chr3_2:30658558-30658577 Msa0402460:intron 35.0%
! TTCTAGGAAAGGCTAAAATG+AGG - chr3_2:30658752-30658771 None:intergenic 35.0%
ACCATACTGAACTGAATCTT+CGG - chr3_2:30658823-30658842 None:intergenic 35.0%
ATCCTAAAATCCCTTCAGAA+TGG + chr3_2:30659417-30659436 Msa0402460:intron 35.0%
!! ATCCATTCTGAAGGGATTTT+AGG - chr3_2:30659422-30659441 None:intergenic 35.0%
! TGATAGTGATCCATTCTGAA+GGG - chr3_2:30659430-30659449 None:intergenic 35.0%
!! TTGATAGTGATCCATTCTGA+AGG - chr3_2:30659431-30659450 None:intergenic 35.0%
! TAGTTGGTATCTTGGTTAAC+AGG + chr3_2:30659537-30659556 Msa0402460:intron 35.0%
! AGTTGGTATCTTGGTTAACA+GGG + chr3_2:30659538-30659557 Msa0402460:intron 35.0%
!! TTCTCTCAAGTCCTTTTTCA+TGG - chr3_2:30659746-30659765 None:intergenic 35.0%
!! TTCATGTTGTTAGCCTCTTT+TGG + chr3_2:30659866-30659885 Msa0402460:intron 35.0%
!!! CTCTTTTGGCATCTAGTTTT+GGG + chr3_2:30659880-30659899 Msa0402460:intron 35.0%
TTCTAGATAGTTTCAGCCTA+AGG + chr3_2:30659905-30659924 Msa0402460:intron 35.0%
TCTAGATAGTTTCAGCCTAA+GGG + chr3_2:30659906-30659925 Msa0402460:intron 35.0%
!!! AGCAGGTTTTGGTTGTTATA+TGG + chr3_2:30659941-30659960 Msa0402460:intron 35.0%
TACAGAAACAAAACAAGGGA+GGG - chr3_2:30660045-30660064 None:intergenic 35.0%
CAACAATATGACACTCTCAA+AGG - chr3_2:30660300-30660319 None:intergenic 35.0%
!! TTGAGAGTGTCATATTGTTG+TGG + chr3_2:30660300-30660319 Msa0402460:intron 35.0%
ATAGAAAGGAGGCAACATAT+TGG + chr3_2:30660469-30660488 Msa0402460:five_prime_UTR 35.0%
! GTGTCTAAAACTAAGAGGTA+CGG + chr3_2:30660681-30660700 Msa0402460:five_prime_UTR 35.0%
! TGTCTAAAACTAAGAGGTAC+GGG + chr3_2:30660682-30660701 Msa0402460:five_prime_UTR 35.0%
TTGCATTCCATACTTGCATT+AGG + chr3_2:30660850-30660869 Msa0402460:five_prime_UTR 35.0%
TGCATTCCATACTTGCATTA+GGG + chr3_2:30660851-30660870 Msa0402460:five_prime_UTR 35.0%
GAATTTATAGTCCAACCATC+AGG + chr3_2:30660877-30660896 Msa0402460:five_prime_UTR 35.0%
!! CAGCTAATACATTTTGAGTG+GGG - chr3_2:30661152-30661171 None:intergenic 35.0%
!! GCAGCTAATACATTTTGAGT+GGG - chr3_2:30661153-30661172 None:intergenic 35.0%
! TGCAGCTAATACATTTTGAG+TGG - chr3_2:30661154-30661173 None:intergenic 35.0%
AAATTCACTTACGTGTTAGC+CGG + chr3_2:30661189-30661208 Msa0402460:five_prime_UTR 35.0%
GACCCTTTAATAATTCCTGA+AGG + chr3_2:30661267-30661286 Msa0402460:five_prime_UTR 35.0%
! TAACTTTTCCACTAACCTTC+AGG - chr3_2:30661285-30661304 None:intergenic 35.0%
!! TGTAGGAAAGTTTTATCTCG+GGG + chr3_2:30661388-30661407 Msa0402460:intron 35.0%
CGGGATTTATGCTTAAACAA+GGG + chr3_2:30661414-30661433 Msa0402460:five_prime_UTR 35.0%
! TGATAACGAACTCCTCTATA+TGG - chr3_2:30661449-30661468 None:intergenic 35.0%
! AACGTCATTGAGAGAACTTT+TGG + chr3_2:30661542-30661561 Msa0402460:five_prime_UTR 35.0%
TTCATCATGCTGTTGTGTTT+GGG - chr3_2:30661750-30661769 None:intergenic 35.0%
AACTACATTAAGCTCCATAC+AGG - chr3_2:30661826-30661845 None:intergenic 35.0%
ATTGAATGCTTTGATGGAAG+AGG + chr3_2:30662197-30662216 Msa0402460:CDS 35.0%
!! TGAATGTCGTAGCTGTTTTA+CGG + chr3_2:30662268-30662287 Msa0402460:CDS 35.0%
!!! ATGTGTTGTTTTGTTATGGC+TGG - chr3_2:30662306-30662325 None:intergenic 35.0%
TTGGATGGAATTCAACAACT+AGG + chr3_2:30662397-30662416 Msa0402460:CDS 35.0%
TTCAACAACTAGGAGGTTTA+CGG + chr3_2:30662407-30662426 Msa0402460:CDS 35.0%
CTTATAAGTTCTTCCCAAAC+TGG - chr3_2:30662441-30662460 None:intergenic 35.0%
! CATAGTGTGTGTTTGATGAT+AGG + chr3_2:30662553-30662572 Msa0402460:intron 35.0%
!!! GATGTTCTGAAGGTTCTTTT+TGG + chr3_2:30662623-30662642 Msa0402460:CDS 35.0%
!!! TGTTCTGAAGGTTCTTTTTG+GGG + chr3_2:30662625-30662644 Msa0402460:CDS 35.0%
TCATGTAAGTATCATCAGCT+GGG - chr3_2:30662763-30662782 None:intergenic 35.0%
! GTGCTGATATACTTGATGAA+GGG + chr3_2:30662792-30662811 Msa0402460:CDS 35.0%
ACTCATACAGTCCAACATAT+GGG + chr3_2:30662834-30662853 Msa0402460:CDS 35.0%
TGATGTGATTTCCCATATGT+TGG - chr3_2:30662848-30662867 None:intergenic 35.0%
! TCCAATGAATGATTTTGTGG+AGG + chr3_2:30662910-30662929 Msa0402460:CDS 35.0%
TTCTGATCAATTGCATGATG+TGG + chr3_2:30663000-30663019 Msa0402460:CDS 35.0%
ATGGAATATGCTTGATGAGT+TGG + chr3_2:30663126-30663145 Msa0402460:CDS 35.0%
TAGCACTTGAAACGAAATTG+TGG - chr3_2:30663160-30663179 None:intergenic 35.0%
ACAGGTTCTCTTACAAATGA+TGG + chr3_2:30663246-30663265 Msa0402460:CDS 35.0%
ATATGTAATGAGGACACATC+TGG + chr3_2:30663334-30663353 Msa0402460:three_prime_UTR 35.0%
CATGCAGTAGGGTTAAAAAT+AGG + chr3_2:30663398-30663417 Msa0402460:three_prime_UTR 35.0%
!! CAATATGTAGTTGCCACTTT+AGG + chr3_2:30663421-30663440 Msa0402460:three_prime_UTR 35.0%
! ATTTTGTGTTAGGCCAACTA+TGG + chr3_2:30663489-30663508 Msa0402460:three_prime_UTR 35.0%
ACCATAAGAAATGCCATAGT+TGG - chr3_2:30663505-30663524 None:intergenic 35.0%
CCGCGAAAACCAAAAAGAAA+AGG - chr3_2:30657975-30657994 None:intergenic 40.0%
CAAAGGAATAAAAAGGTGGG+AGG - chr3_2:30658019-30658038 None:intergenic 40.0%
! CTCCCACCTTTTTATTCCTT+TGG + chr3_2:30658017-30658036 Msa0402460:five_prime_UTR 40.0%
GACCCAAAGGAATAAAAAGG+TGG - chr3_2:30658023-30658042 None:intergenic 40.0%
TGAGGAAGATAATGACCCAA+AGG - chr3_2:30658036-30658055 None:intergenic 40.0%
GATAGATCAAGAGAAGTTGC+AGG - chr3_2:30658084-30658103 None:intergenic 40.0%
!! TTCCAGATCTAGTCTTGATG+TGG - chr3_2:30658127-30658146 None:intergenic 40.0%
TAAAAGGACATGCAGTACCA+TGG + chr3_2:30658247-30658266 Msa0402460:intron 40.0%
ATGTTGGAGGGATTTCTTTG+TGG + chr3_2:30658433-30658452 Msa0402460:intron 40.0%
TCCGAAGATTCAGTTCAGTA+TGG + chr3_2:30658819-30658838 Msa0402460:intron 40.0%
!! GCTAACTTGCTGATATAGCT+TGG + chr3_2:30658951-30658970 Msa0402460:intron 40.0%
TTCAAACGCTCTCATTCTTC+AGG - chr3_2:30659679-30659698 None:intergenic 40.0%
CCAAAACTAGATGCCAAAAG+AGG - chr3_2:30659882-30659901 None:intergenic 40.0%
!! CCTCTTTTGGCATCTAGTTT+TGG + chr3_2:30659879-30659898 Msa0402460:intron 40.0%
CTAGATAGTTTCAGCCTAAG+GGG + chr3_2:30659907-30659926 Msa0402460:intron 40.0%
ACAGAAACAAAACAAGGGAG+GGG - chr3_2:30660044-30660063 None:intergenic 40.0%
GTACAGAAACAAAACAAGGG+AGG - chr3_2:30660046-30660065 None:intergenic 40.0%
GATCATGTCTTGTGTTCATG+AGG + chr3_2:30660090-30660109 Msa0402460:intron 40.0%
TTGCTCATTTGTGCTACATG+TGG + chr3_2:30660270-30660289 Msa0402460:intron 40.0%
TGCTCATTTGTGCTACATGT+GGG + chr3_2:30660271-30660290 Msa0402460:intron 40.0%
! AGAGTGTCATATTGTTGTGG+AGG + chr3_2:30660303-30660322 Msa0402460:intron 40.0%
ATGCTCACTTTGTGGAGAAT+AGG - chr3_2:30660575-30660594 None:intergenic 40.0%
TAGTGCACACAGATAAGTGT+CGG + chr3_2:30660620-30660639 Msa0402460:five_prime_UTR 40.0%
! CAGCTGTGTCTAAAACTAAG+AGG + chr3_2:30660676-30660695 Msa0402460:five_prime_UTR 40.0%
! AAGAGGTACGGGTATAGTAA+AGG + chr3_2:30660693-30660712 Msa0402460:five_prime_UTR 40.0%
TGCAAGTATGGAATGCAACA+CGG - chr3_2:30660848-30660867 None:intergenic 40.0%
GCATTCCATACTTGCATTAG+GGG + chr3_2:30660852-30660871 Msa0402460:five_prime_UTR 40.0%
TTCTTCCCCTAATGCAAGTA+TGG - chr3_2:30660860-30660879 None:intergenic 40.0%
! TAGTATTTGTGGTGGGACAT+CGG - chr3_2:30660905-30660924 None:intergenic 40.0%
GATTGCATTGGAGCTATAGA+TGG + chr3_2:30661063-30661082 Msa0402460:five_prime_UTR 40.0%
! TTTTCTTCCACGAAAACGAG+GGG - chr3_2:30661124-30661143 None:intergenic 40.0%
! CTTTTCTTCCACGAAAACGA+GGG - chr3_2:30661125-30661144 None:intergenic 40.0%
! TCTTTTCTTCCACGAAAACG+AGG - chr3_2:30661126-30661145 None:intergenic 40.0%
AATTCACTTACGTGTTAGCC+GGG + chr3_2:30661190-30661209 Msa0402460:five_prime_UTR 40.0%
!! AAAGTTTTATCTCGGGGATG+CGG + chr3_2:30661394-30661413 Msa0402460:five_prime_UTR 40.0%
GCGGGATTTATGCTTAAACA+AGG + chr3_2:30661413-30661432 Msa0402460:five_prime_UTR 40.0%
GGGTTACTAACTCCATATAG+AGG + chr3_2:30661434-30661453 Msa0402460:five_prime_UTR 40.0%
!! TTGAAAGAGTATTCCTCTCG+TGG + chr3_2:30661470-30661489 Msa0402460:five_prime_UTR 40.0%
!! TGAAAGAGTATTCCTCTCGT+GGG + chr3_2:30661471-30661490 Msa0402460:five_prime_UTR 40.0%
! AATAACTCTCGGGGATTTTG+TGG - chr3_2:30661497-30661516 None:intergenic 40.0%
TCGAAGGTTGAATAACTCTC+GGG - chr3_2:30661507-30661526 None:intergenic 40.0%
GTCGAAGGTTGAATAACTCT+CGG - chr3_2:30661508-30661527 None:intergenic 40.0%
! TCAGTGCCACTAGCTATAAT+TGG - chr3_2:30661587-30661606 None:intergenic 40.0%
! TGATGAAGCACTAATTGCTG+AGG + chr3_2:30661688-30661707 Msa0402460:five_prime_UTR 40.0%
CTTCATCATGCTGTTGTGTT+TGG - chr3_2:30661751-30661770 None:intergenic 40.0%
ACTGAAATGTGGAACCTGTA+TGG + chr3_2:30661809-30661828 Msa0402460:five_prime_UTR 40.0%
!! CTTAAGGTGGACTGATGATA+TGG + chr3_2:30662164-30662183 Msa0402460:CDS 40.0%
GGTGAAGCGTATGATCTATT+TGG + chr3_2:30662360-30662379 Msa0402460:CDS 40.0%
GAAGCGTATGATCTATTTGG+TGG + chr3_2:30662363-30662382 Msa0402460:CDS 40.0%
GATGGAATTCAACAACTAGG+AGG + chr3_2:30662400-30662419 Msa0402460:CDS 40.0%
TAAAACCACATGCTGCTAAG+TGG + chr3_2:30662576-30662595 Msa0402460:CDS 40.0%
! TAGATGTTTTTCCTGCTGCT+CGG - chr3_2:30662655-30662674 None:intergenic 40.0%
ACAATCAGTTGGAGAAGGAA+AGG + chr3_2:30662693-30662712 Msa0402460:CDS 40.0%
CAATCAGTTGGAGAAGGAAA+GGG + chr3_2:30662694-30662713 Msa0402460:CDS 40.0%
GTCATGTAAGTATCATCAGC+TGG - chr3_2:30662764-30662783 None:intergenic 40.0%
! CGTGCTGATATACTTGATGA+AGG + chr3_2:30662791-30662810 Msa0402460:CDS 40.0%
GGACTGTATGAGTCAACAAT+GGG - chr3_2:30662827-30662846 None:intergenic 40.0%
TGGACTGTATGAGTCAACAA+TGG - chr3_2:30662828-30662847 None:intergenic 40.0%
GACTCATACAGTCCAACATA+TGG + chr3_2:30662833-30662852 Msa0402460:CDS 40.0%
GGGAAATCACATCAATCCAT+AGG + chr3_2:30662854-30662873 Msa0402460:CDS 40.0%
CATCAATCCATAGGAACATC+TGG + chr3_2:30662863-30662882 Msa0402460:CDS 40.0%
! GGCTCCAATGAATGATTTTG+TGG + chr3_2:30662907-30662926 Msa0402460:CDS 40.0%
GCCTCCACAAAATCATTCAT+TGG - chr3_2:30662914-30662933 None:intergenic 40.0%
! TGATTTTGTGGAGGCTCAAT+TGG + chr3_2:30662919-30662938 Msa0402460:CDS 40.0%
CAATTGGATAGAATGACGAG+TGG + chr3_2:30662935-30662954 Msa0402460:CDS 40.0%
ATTATCTGCACGACAAGTTG+CGG + chr3_2:30663039-30663058 Msa0402460:CDS 40.0%
TGTATACAGGAGCAGATGTA+TGG + chr3_2:30663107-30663126 Msa0402460:CDS 40.0%
CTACTGTCAATTGCCTAAAG+TGG - chr3_2:30663437-30663456 None:intergenic 40.0%
GCCAACTATGGCATTTCTTA+TGG + chr3_2:30663501-30663520 Msa0402460:three_prime_UTR 40.0%
TCTCTCAACAGCGAAGAAAG+TGG + chr3_2:30657910-30657929 Msa0402460:five_prime_UTR 45.0%
GAAAGTGGAGAGAAACACAC+TGG + chr3_2:30657925-30657944 Msa0402460:five_prime_UTR 45.0%
GAATAAAAAGGTGGGAGGAG+AGG - chr3_2:30658014-30658033 None:intergenic 45.0%
! TCATCCTCCAAGTTTGGTGA+TGG + chr3_2:30658057-30658076 Msa0402460:five_prime_UTR 45.0%
! GGTGCTGTAGAGATCTAAGA+AGG - chr3_2:30658106-30658125 None:intergenic 45.0%
CACCACATCAAGACTAGATC+TGG + chr3_2:30658122-30658141 Msa0402460:five_prime_UTR 45.0%
TGACAAACACACCACATCCA+TGG - chr3_2:30658267-30658286 None:intergenic 45.0%
TTTCAGCCTAAGGGGTTTGA+AGG + chr3_2:30659915-30659934 Msa0402460:intron 45.0%
TTCAGCCTAAGGGGTTTGAA+GGG + chr3_2:30659916-30659935 Msa0402460:intron 45.0%
TGACGTCTATGCTCACTTTG+TGG - chr3_2:30660583-30660602 None:intergenic 45.0%
AGTGCACACAGATAAGTGTC+GGG + chr3_2:30660621-30660640 Msa0402460:five_prime_UTR 45.0%
TGTCGGGACATCATACGAAT+GGG + chr3_2:30660637-30660656 Msa0402460:five_prime_UTR 45.0%
GTCTACTGTAGAAGAGCAAG+TGG + chr3_2:30660726-30660745 Msa0402460:five_prime_UTR 45.0%
!! AAGTTTTATCTCGGGGATGC+GGG + chr3_2:30661395-30661414 Msa0402460:five_prime_UTR 45.0%
CGAAGGTTGAATAACTCTCG+GGG - chr3_2:30661506-30661525 None:intergenic 45.0%
ACCTTCGACACTCTTCACTT+CGG + chr3_2:30661519-30661538 Msa0402460:five_prime_UTR 45.0%
! CATGATGAAGACTACCGACT+AGG + chr3_2:30661761-30661780 Msa0402460:five_prime_UTR 45.0%
AGAACCTAGACAAGCTGCTA+AGG + chr3_2:30662137-30662156 Msa0402460:CDS 45.0%
AAGCTGCTAAGGACGTCTTA+AGG + chr3_2:30662148-30662167 Msa0402460:CDS 45.0%
TTGATGGAAGAGGTCCACAA+AGG + chr3_2:30662207-30662226 Msa0402460:CDS 45.0%
TGATGGAAGAGGTCCACAAA+GGG + chr3_2:30662208-30662227 Msa0402460:CDS 45.0%
AAGAGGTCCACAAAGGGAAT+AGG + chr3_2:30662214-30662233 Msa0402460:CDS 45.0%
CATCATGCCTATTCCCTTTG+TGG - chr3_2:30662224-30662243 None:intergenic 45.0%
CACAAAGGGAATAGGCATGA+TGG + chr3_2:30662222-30662241 Msa0402460:CDS 45.0%
! GATCTATTTGGTGGCTTGAG+CGG + chr3_2:30662372-30662391 Msa0402460:CDS 45.0%
! GTTTTCCACTTAGCAGCATG+TGG - chr3_2:30662584-30662603 None:intergenic 45.0%
GAGACACAATCAGTTGGAGA+AGG + chr3_2:30662688-30662707 Msa0402460:CDS 45.0%
GTTGGAGAAGGAAAGGGAAA+AGG + chr3_2:30662700-30662719 Msa0402460:CDS 45.0%
CATCAAGTATATCAGCACGC+TGG - chr3_2:30662790-30662809 None:intergenic 45.0%
!! ATAGGAACATCTGGTTCTCG+CGG + chr3_2:30662872-30662891 Msa0402460:CDS 45.0%
GATAGAATGACGAGTGGCAT+TGG + chr3_2:30662941-30662960 Msa0402460:CDS 45.0%
ATGGCTGATGCGTTGAACAA+AGG + chr3_2:30662968-30662987 Msa0402460:CDS 45.0%
TGTAGACCTCGAGTGTATAC+AGG + chr3_2:30663094-30663113 Msa0402460:CDS 45.0%
!!! TATATTTTATAAAATTTTGT+AGG + chr3_2:30661371-30661390 Msa0402460:intron 5.0%
!! GATATATATATATATATATA+TGG + chr3_2:30663459-30663478 Msa0402460:three_prime_UTR 5.0%
AAGAGAGAAGACTGCAGCGT+GGG + chr3_2:30657866-30657885 Msa0402460:five_prime_UTR 50.0%
CCAAACTTGGAGGATGAGTG+AGG - chr3_2:30658054-30658073 None:intergenic 50.0%
CCTCACTCATCCTCCAAGTT+TGG + chr3_2:30658051-30658070 Msa0402460:five_prime_UTR 50.0%
AGGTCCATCACCAAACTTGG+AGG - chr3_2:30658064-30658083 None:intergenic 50.0%
TGCAGGTCCATCACCAAACT+TGG - chr3_2:30658067-30658086 None:intergenic 50.0%
GACATGCAGTACCATGGATG+TGG + chr3_2:30658253-30658272 Msa0402460:intron 50.0%
TCAGCCTAAGGGGTTTGAAG+GGG + chr3_2:30659917-30659936 Msa0402460:intron 50.0%
! TTTGAAGGGGGAGCAGGTTT+TGG + chr3_2:30659930-30659949 Msa0402460:intron 50.0%
GTGTCGGGACATCATACGAA+TGG + chr3_2:30660636-30660655 Msa0402460:five_prime_UTR 50.0%
GTCGGGACATCATACGAATG+GGG + chr3_2:30660638-30660657 Msa0402460:five_prime_UTR 50.0%
CACAGCTGCATGAATGCTTC+AGG - chr3_2:30660664-30660683 None:intergenic 50.0%
TGGCACACACATTCGAGTGA+AGG + chr3_2:30661083-30661102 Msa0402460:five_prime_UTR 50.0%
ACATTCGAGTGAAGGTCCCA+AGG + chr3_2:30661091-30661110 Msa0402460:five_prime_UTR 50.0%
CATTCGAGTGAAGGTCCCAA+GGG + chr3_2:30661092-30661111 Msa0402460:five_prime_UTR 50.0%
!! TCCGAAGTGAAGAGTGTCGA+AGG - chr3_2:30661523-30661542 None:intergenic 50.0%
ACCGACTAGGATCGCTTCTT+AGG + chr3_2:30661774-30661793 Msa0402460:five_prime_UTR 50.0%
CCCTAAGAAGCGATCCTAGT+CGG - chr3_2:30661778-30661797 None:intergenic 50.0%
CCGACTAGGATCGCTTCTTA+GGG + chr3_2:30661775-30661794 Msa0402460:five_prime_UTR 50.0%
ACGTCCTTAGCAGCTTGTCT+AGG - chr3_2:30662144-30662163 None:intergenic 50.0%
CTGCTAAGGACGTCTTAAGG+TGG + chr3_2:30662151-30662170 Msa0402460:CDS 50.0%
! TTTGGTGGCTTGAGCGGATT+TGG + chr3_2:30662378-30662397 Msa0402460:CDS 50.0%
AACTAGGAGGTTTACGGCTG+AGG + chr3_2:30662413-30662432 Msa0402460:CDS 50.0%
TTACGGCTGAGGAACCAGTT+TGG + chr3_2:30662424-30662443 Msa0402460:CDS 50.0%
TACGGCTGAGGAACCAGTTT+GGG + chr3_2:30662425-30662444 Msa0402460:CDS 50.0%
GCGAGAACCAGATGTTCCTA+TGG - chr3_2:30662873-30662892 None:intergenic 50.0%
TTCTCGCGGAACAAAGCGTA+AGG + chr3_2:30662886-30662905 Msa0402460:CDS 50.0%
TCTGCTCCTGTATACACTCG+AGG - chr3_2:30663103-30663122 None:intergenic 50.0%
ACCTGTAAGCGCATGTCAGT+GGG - chr3_2:30663232-30663251 None:intergenic 50.0%
AACCTGTAAGCGCATGTCAG+TGG - chr3_2:30663233-30663252 None:intergenic 50.0%
GAAGAGAGAAGACTGCAGCG+TGG + chr3_2:30657865-30657884 Msa0402460:five_prime_UTR 55.0%
CAGCCTAAGGGGTTTGAAGG+GGG + chr3_2:30659918-30659937 Msa0402460:intron 55.0%
TCACTTACGTGTTAGCCGGG+TGG + chr3_2:30661193-30661212 Msa0402460:five_prime_UTR 55.0%
CACTTACGTGTTAGCCGGGT+GGG + chr3_2:30661194-30661213 Msa0402460:five_prime_UTR 55.0%
AGATGCTGTTCCTTCCCACC+CGG - chr3_2:30661211-30661230 None:intergenic 55.0%
! GTGGCTTGAGCGGATTTGGA+TGG + chr3_2:30662382-30662401 Msa0402460:CDS 55.0%
! GACGAGTGGCATTGGACTCA+TGG + chr3_2:30662949-30662968 Msa0402460:CDS 55.0%
GCTCCCCCTTCAAACCCCTT+AGG - chr3_2:30659924-30659943 None:intergenic 60.0%
AAGGGGTTTGAAGGGGGAGC+AGG + chr3_2:30659924-30659943 Msa0402460:intron 60.0%
GGACATCGGCACCTGATGGT+TGG - chr3_2:30660891-30660910 None:intergenic 60.0%
AACGAGGGGCTTCTGCCCTT+GGG - chr3_2:30661110-30661129 None:intergenic 60.0%
AAACGAGGGGCTTCTGCCCT+TGG - chr3_2:30661111-30661130 None:intergenic 60.0%
! GCAGAAGCCCCTCGTTTTCG+TGG + chr3_2:30661114-30661133 Msa0402460:five_prime_UTR 60.0%
TACGTGTTAGCCGGGTGGGA+AGG + chr3_2:30661198-30661217 Msa0402460:five_prime_UTR 60.0%
! GGGATTTTGTGGCCCACGAG+AGG - chr3_2:30661486-30661505 None:intergenic 60.0%
TTTGGGGAAGACCGAGCAGC+AGG + chr3_2:30662641-30662660 Msa0402460:CDS 60.0%
GCCCACTGACATGCGCTTAC+AGG + chr3_2:30663228-30663247 Msa0402460:CDS 60.0%
AGGTGGGAGGAGAGGAAGCG+CGG - chr3_2:30658006-30658025 None:intergenic 65.0%
GGTGGGACATCGGCACCTGA+TGG - chr3_2:30660895-30660914 None:intergenic 65.0%
! GGTGGGAGGAGAGGAAGCGC+GGG - chr3_2:30658005-30658024 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 30657748 30663533 30657748 ID=Msa0402460;Name=Msa0402460
chr3_2 mRNA 30657748 30663533 30657748 ID=Msa0402460-mRNA-1;Parent=Msa0402460;Name=Msa0402460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1830|1|1|1|0.6|0.5|6|245|354
chr3_2 exon 30657748 30658160 30657748 ID=Msa0402460-mRNA-1:exon:6138;Parent=Msa0402460-mRNA-1
chr3_2 exon 30660446 30660954 30660446 ID=Msa0402460-mRNA-1:exon:6139;Parent=Msa0402460-mRNA-1
chr3_2 exon 30661063 30661288 30661063 ID=Msa0402460-mRNA-1:exon:6140;Parent=Msa0402460-mRNA-1
chr3_2 exon 30661393 30661986 30661393 ID=Msa0402460-mRNA-1:exon:6141;Parent=Msa0402460-mRNA-1
chr3_2 exon 30662023 30662461 30662023 ID=Msa0402460-mRNA-1:exon:6142;Parent=Msa0402460-mRNA-1
chr3_2 exon 30662575 30663533 30662575 ID=Msa0402460-mRNA-1:exon:6143;Parent=Msa0402460-mRNA-1
chr3_2 five_prime_UTR 30657748 30658160 30657748 ID=Msa0402460-mRNA-1:five_prime_utr;Parent=Msa0402460-mRNA-1
chr3_2 five_prime_UTR 30660446 30660954 30660446 ID=Msa0402460-mRNA-1:five_prime_utr;Parent=Msa0402460-mRNA-1
chr3_2 five_prime_UTR 30661063 30661288 30661063 ID=Msa0402460-mRNA-1:five_prime_utr;Parent=Msa0402460-mRNA-1
chr3_2 five_prime_UTR 30661393 30661986 30661393 ID=Msa0402460-mRNA-1:five_prime_utr;Parent=Msa0402460-mRNA-1
chr3_2 five_prime_UTR 30662023 30662110 30662023 ID=Msa0402460-mRNA-1:five_prime_utr;Parent=Msa0402460-mRNA-1
chr3_2 CDS 30662111 30662461 30662111 ID=Msa0402460-mRNA-1:cds;Parent=Msa0402460-mRNA-1
chr3_2 CDS 30662575 30663288 30662575 ID=Msa0402460-mRNA-1:cds;Parent=Msa0402460-mRNA-1
chr3_2 three_prime_UTR 30663289 30663533 30663289 ID=Msa0402460-mRNA-1:three_prime_utr;Parent=Msa0402460-mRNA-1
Gene Sequence

>Msa0402460

ATGGCAAAGGATAAAGGTCAAAGTGTAGAACCTAGACAAGCTGCTAAGGACGTCTTAAGGTGGACTGATGATATGGATCAAATATTATTGAATGCTTTGATGGAAGAGGTCCACAAAGGGAATAGGCATGATGGTTCATTTTCATCTGAAGCATACTTGAATGTCGTAGCTGTTTTACGGTCTAACATTGATCCAGCCATAACAAAACAACACATAAAAAATAGAATGAAAACTTTGAAAGATCGTTTTGGTGAAGCGTATGATCTATTTGGTGGCTTGAGCGGATTTGGATGGAATTCAACAACTAGGAGGTTTACGGCTGAGGAACCAGTTTGGGAAGAACTTATAAGTGTAAAACCACATGCTGCTAAGTGGAAAACCATGCAAGTTAAGCATTATGATGTTCTGAAGGTTCTTTTTGGGGAAGACCGAGCAGCAGGAAAAACATCTAAGACTAATAAAATGAGACACAATCAGTTGGAGAAGGAAAGGGAAAAGGAAAAAGAAAAAGAAAATGAAAACGTTAATCTGAATGACCCAGCTGATGATACTTACATGACTGACCAGCGTGCTGATATACTTGATGAAGGGCAAGAAGAACCCATTGTTGACTCATACAGTCCAACATATGGGAAATCACATCAATCCATAGGAACATCTGGTTCTCGCGGAACAAAGCGTAAGGCTCCAATGAATGATTTTGTGGAGGCTCAATTGGATAGAATGACGAGTGGCATTGGACTCATGGCTGATGCGTTGAACAAAGGTAATTCAATTTCTGATCAATTGCATGATGTGGCTAAACAACAAATAGAATTATCTGCACGACAAGTTGCGGCTATTGAGAAACGCAACGAAATCTTGCAAAATTGTAGACCTCGAGTGTATACAGGAGCAGATGTATGGAATATGCTTGATGAGTTGGATCTGTTGCCACAATTTCGTTTCAAGTGCTATGAAGTTCTTTGCAATGATAGCAAAAAGAAGGAGCTGATTTTTGGTGTGCCCACTGACATGCGCTTACAGGTTCTCTTACAAATGATGGATGCTAATTTCTACCATTGA
Protein sequence

>Msa0402460

MAKDKGQSVEPRQAAKDVLRWTDDMDQILLNALMEEVHKGNRHDGSFSSEAYLNVVAVLRSNIDPAITKQHIKNRMKTLKDRFGEAYDLFGGLSGFGWNSTTRRFTAEEPVWEELISVKPHAAKWKTMQVKHYDVLKVLFGEDRAAGKTSKTNKMRHNQLEKEREKEKEKENENVNLNDPADDTYMTDQRADILDEGQEEPIVDSYSPTYGKSHQSIGTSGSRGTKRKAPMNDFVEAQLDRMTSGIGLMADALNKGNSISDQLHDVAKQQIELSARQVAAIEKRNEILQNCRPRVYTGADVWNMLDELDLLPQFRFKCYEVLCNDSKKKELIFGVPTDMRLQVLLQMMDANFYH*