AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0402550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402550 MtrunA17_Chr3g0092161 93.000 200 11 2 1 198 1 199 3.41e-119 339
Msa0402550 MtrunA17_Chr4g0060741 55.224 201 79 5 1 198 1 193 1.46e-63 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402550 AT5G62440.1 52.041 196 60 5 1 189 1 169 1.27e-49 161
Msa0402550 AT5G62440.1 58.571 140 42 1 80 219 60 183 6.05e-49 159

Find 102 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGATAATTATGATTT+TGG 0.139346 3_2:-30840160 Msa0402550:three_prime_UTR
CGAAACCACGTCGTCGTCTT+TGG 0.160824 3_2:+30842031 None:intergenic
TTTATAATTTATGAAAGTTT+TGG 0.235443 3_2:-30840126 Msa0402550:three_prime_UTR
CAAAACGTTTGGTTCTTCTT+TGG 0.240104 3_2:-30841889 Msa0402550:CDS
GATTTCAATTGCATCTCTTC+TGG 0.274351 3_2:+30840402 None:intergenic
AGCATCTGGTGATGTGAAAT+TGG 0.279110 3_2:-30841916 Msa0402550:CDS
GAGCGGTTTCTTCTGCCATT+AGG 0.287333 3_2:+30842165 None:intergenic
GGCAGAGGAAGGGGTGGAAG+AGG 0.288084 3_2:-30840321 Msa0402550:CDS
CTCTGCTTCTTCTTCTTCCC+TGG 0.300197 3_2:+30842058 None:intergenic
GAAACCACGTCGTCGTCTTT+GGG 0.315284 3_2:+30842032 None:intergenic
AGAAGAAAGGTTGGAGAAGT+TGG 0.318089 3_2:-30841973 Msa0402550:CDS
AGCGGTTTCTTCTGCCATTA+GGG 0.318543 3_2:+30842166 None:intergenic
GGTGGTGGAGGAAAGCATTA+TGG 0.319668 3_2:-30840354 Msa0402550:CDS
CAAAGAAGAACCAAACGTTT+TGG 0.321184 3_2:+30841890 None:intergenic
CCTACGCCAATCTTTCTATC+AGG 0.325692 3_2:+30840549 None:intergenic
GGTGGTGGTGGTCGTGGAAG+AGG 0.332339 3_2:-30840288 Msa0402550:CDS
GTGTTGGGATCGACGATTTC+GGG 0.334129 3_2:+30842143 None:intergenic
GGAAATGGTGGCAGAGGAAG+GGG 0.363172 3_2:-30840330 Msa0402550:CDS
TGTGTTGGGATCGACGATTT+CGG 0.369010 3_2:+30842142 None:intergenic
CACACAACCATTTCAGTTTG+TGG 0.369032 3_2:+30840060 None:intergenic
AGCGAGGGTGGTCGCGAACT+TGG 0.371048 3_2:+30840514 None:intergenic
ACTCCCAACTATCCCAATCT+AGG 0.371991 3_2:-30842209 Msa0402550:five_prime_UTR
TAAATTGTAAAACCCTAGAT+TGG 0.374432 3_2:+30842196 None:intergenic
GTAGGTGCTATTTCCTCATC+AGG 0.377430 3_2:-30840485 Msa0402550:CDS
TTATATGATCCACACACTTT+CGG 0.387200 3_2:+30840433 None:intergenic
AAATTGATTACAATAGTTAC+TGG 0.392191 3_2:-30840253 Msa0402550:exon
TTCACAAATTTCTTCATGCT+TGG 0.392802 3_2:-30841851 Msa0402550:CDS
AACAAGAAGTTTGGTGGTGG+TGG 0.393287 3_2:-30840372 Msa0402550:CDS
CAATTTACTCAAAACCCTAA+TGG 0.394087 3_2:-30842180 Msa0402550:exon
AGAGTTATTATTAAATGATT+CGG 0.405519 3_2:-30840031 Msa0402550:three_prime_UTR
TGGCGCGGTGGTGGTGGTCG+TGG 0.406520 3_2:-30840294 Msa0402550:CDS
AAGAAGTTTGGTGGTGGTGG+TGG 0.407943 3_2:-30840369 Msa0402550:CDS
AGAGGAGGTTGGCGCGGTGG+TGG 0.415258 3_2:-30840303 Msa0402550:CDS
GGAGGTTGGCGCGGTGGTGG+TGG 0.415283 3_2:-30840300 Msa0402550:CDS
ATCAGTGGAAGAAGAAAGGT+TGG 0.420672 3_2:-30841982 Msa0402550:CDS
GTGGTGGTGGTCGTGGAAGA+GGG 0.421362 3_2:-30840287 Msa0402550:CDS
AACCCTAGATTGGGATAGTT+GGG 0.421427 3_2:+30842206 None:intergenic
TGGTGGTGGTCGTGGAAGAG+GGG 0.421459 3_2:-30840286 Msa0402550:CDS
AGTCCAAAGAAAAGCGTGCC+AGG 0.428299 3_2:-30842076 Msa0402550:CDS
GAGGAAATGGTGGCAGAGGA+AGG 0.430070 3_2:-30840332 Msa0402550:CDS
AAACCCTAGATTGGGATAGT+TGG 0.432481 3_2:+30842205 None:intergenic
AAATTGGGACCCAAAACGTT+TGG 0.433304 3_2:-30841900 Msa0402550:CDS
GGTGGTGGTCGTGGAAGAGG+GGG 0.437353 3_2:-30840285 Msa0402550:CDS
GGAAGAGGAGGTTGGCGCGG+TGG 0.438451 3_2:-30840306 Msa0402550:CDS
GGAAAGCATTATGGAGGAAA+TGG 0.440043 3_2:-30840345 Msa0402550:CDS
GGTGGCGGCGACGGTTGTGT+TGG 0.446202 3_2:+30842127 None:intergenic
AAACGTACCACAAACTGAAA+TGG 0.448793 3_2:-30840067 Msa0402550:three_prime_UTR
AACTTCCATGTCTACGGTGG+CGG 0.451314 3_2:+30842112 None:intergenic
TGGGTTAGACTCGGTGGAGC+GGG 0.454793 3_2:+30842249 None:intergenic
TCTGAGGGGAACAAGAAGTT+TGG 0.454847 3_2:-30840381 Msa0402550:CDS
AAATGTTATGTACATTTGGC+TGG 0.455894 3_2:-30840205 Msa0402550:three_prime_UTR
GTGTTCGTGGCTTTGTTCGT+GGG 0.457708 3_2:+30842230 None:intergenic
CGACGACGTGGTTTCGAAGA+AGG 0.461104 3_2:-30842024 Msa0402550:CDS
AGAGGAAGGGGTGGAAGAGG+AGG 0.464178 3_2:-30840318 Msa0402550:CDS
CATGTCTACGGTGGCGGCGA+CGG 0.465197 3_2:+30842118 None:intergenic
GCAGAACCTGATAGAAAGAT+TGG 0.466237 3_2:-30840555 Msa0402550:CDS
AAAGAAGAAAAGGAAGCATC+TGG 0.469819 3_2:-30841930 Msa0402550:CDS
GGGATAGTTGGGAGTGTTCG+TGG 0.472155 3_2:+30842217 None:intergenic
CTTTGTTCGTGGGTTAGACT+CGG 0.474113 3_2:+30842240 None:intergenic
GTATGAGCACACGATGTTGC+TGG 0.478639 3_2:-30840598 Msa0402550:CDS
GTGGCGGCGACGGTTGTGTT+GGG 0.479598 3_2:+30842128 None:intergenic
CAATTGCATCTCTTCTGGCA+AGG 0.483061 3_2:+30840407 None:intergenic
GGGATCGACGATTTCGGGAG+CGG 0.491201 3_2:+30842148 None:intergenic
GGTGGAAGAGGAGGTTGGCG+CGG 0.493351 3_2:-30840309 Msa0402550:CDS
ATAATTATCAAGTAATTAGC+AGG 0.499293 3_2:+30840168 None:intergenic
TTGCTGGAATTGCTCAAGAA+TGG 0.501210 3_2:-30840582 Msa0402550:CDS
AGGAAATGGTGGCAGAGGAA+GGG 0.501251 3_2:-30840331 Msa0402550:CDS
AATTGCATCTCTTCTGGCAA+GGG 0.502964 3_2:+30840408 None:intergenic
AGTGTTCGTGGCTTTGTTCG+TGG 0.512561 3_2:+30842229 None:intergenic
GAAGGGGTGGAAGAGGAGGT+TGG 0.517256 3_2:-30840314 Msa0402550:CDS
AATGGTGGCAGAGGAAGGGG+TGG 0.521908 3_2:-30840327 Msa0402550:CDS
AAATTGTAAAACCCTAGATT+GGG 0.524328 3_2:+30842197 None:intergenic
GCATCTGGTGATGTGAAATT+GGG 0.530249 3_2:-30841915 Msa0402550:CDS
GAGATGCAATTGAAATCTGA+GGG 0.531760 3_2:-30840396 Msa0402550:CDS
TGCTGGAATTGCTCAAGAAT+GGG 0.536228 3_2:-30840581 Msa0402550:CDS
CGTCGCCGCCACCGTAGACA+TGG 0.538541 3_2:-30842117 Msa0402550:CDS
TATGGAGGAAATGGTGGCAG+AGG 0.549364 3_2:-30840336 Msa0402550:CDS
AGAGATGCAATTGAAATCTG+AGG 0.552943 3_2:-30840397 Msa0402550:CDS
CTCCCAACTATCCCAATCTA+GGG 0.553717 3_2:-30842208 Msa0402550:five_prime_UTR
CCTGATAGAAAGATTGGCGT+AGG 0.562455 3_2:-30840549 Msa0402550:CDS
TTGTTCACGTTGAGATTCTG+AGG 0.570134 3_2:+30841828 None:intergenic
GAGGGGAACAAGAAGTTTGG+TGG 0.580350 3_2:-30840378 Msa0402550:CDS
TGTTCGTGGGTTAGACTCGG+TGG 0.589631 3_2:+30842243 None:intergenic
TTTCAGCTTCCGAAAGTGTG+TGG 0.599505 3_2:-30840442 Msa0402550:CDS
CAGTGTCATCTTCCCTGATG+AGG 0.600472 3_2:+30840472 None:intergenic
TCAGAATCTCAACGTGAACA+AGG 0.603175 3_2:-30841826 Msa0402550:intron
GGTGGAGGAAAGCATTATGG+AGG 0.604832 3_2:-30840351 Msa0402550:CDS
GGGAACAAGAAGTTTGGTGG+TGG 0.606840 3_2:-30840375 Msa0402550:CDS
GTCCAAAGAAAAGCGTGCCA+GGG 0.611993 3_2:-30842075 Msa0402550:CDS
GTGGGTTAGACTCGGTGGAG+CGG 0.617901 3_2:+30842248 None:intergenic
AGCACCTACTGTTATAGCGA+GGG 0.618289 3_2:+30840499 None:intergenic
CTGATAGAAAGATTGGCGTA+GGG 0.621780 3_2:-30840548 Msa0402550:CDS
TTCAACTTCCATGTCTACGG+TGG 0.626511 3_2:+30842109 None:intergenic
TTAAATGATTCGGTTCATGA+CGG 0.630848 3_2:-30840021 Msa0402550:three_prime_UTR
ACCTACTGTTATAGCGAGGG+TGG 0.640894 3_2:+30840502 None:intergenic
AAGCATTATGGAGGAAATGG+TGG 0.643534 3_2:-30840342 Msa0402550:CDS
TAGCACCTACTGTTATAGCG+AGG 0.657357 3_2:+30840498 None:intergenic
TAGGTGCTATTTCCTCATCA+GGG 0.664836 3_2:-30840484 Msa0402550:CDS
GAAACCCAAAGACGACGACG+TGG 0.678290 3_2:-30842036 Msa0402550:CDS
GAAGAAGGCTAAAGTAGACG+AGG 0.695132 3_2:-30842009 Msa0402550:CDS
ACCACCCTCGCTATAACAGT+AGG 0.706414 3_2:-30840503 Msa0402550:CDS
AGATGCAATTGAAATCTGAG+GGG 0.721407 3_2:-30840395 Msa0402550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTAATCTTTTTTAA+GGG - chr3_2:30841112-30841131 Msa0402550:intron 10.0%
!!! TTTATAATTTATGAAAGTTT+TGG - chr3_2:30842130-30842149 Msa0402550:CDS 10.0%
!!! TTATAATTTATGAAAGTTTT+GGG - chr3_2:30842131-30842150 Msa0402550:CDS 10.0%
!!! AGTTTTTTAATCTTTTTTAA+GGG - chr3_2:30841112-30841131 Msa0402550:intron 10.0%
!!! TTTATAATTTATGAAAGTTT+TGG - chr3_2:30842130-30842149 Msa0402550:CDS 10.0%
!!! TTATAATTTATGAAAGTTTT+GGG - chr3_2:30842131-30842150 Msa0402550:CDS 10.0%
!!! CATATCAAACATAATTTTAA+TGG + chr3_2:30840684-30840703 None:intergenic 15.0%
!!! GAGTTTTTTAATCTTTTTTA+AGG - chr3_2:30841111-30841130 Msa0402550:intron 15.0%
!!! TTACTTGATAATTATGATTT+TGG - chr3_2:30842096-30842115 Msa0402550:CDS 15.0%
!! AGAGTTATTATTAAATGATT+CGG - chr3_2:30842225-30842244 Msa0402550:five_prime_UTR 15.0%
!!! CATATCAAACATAATTTTAA+TGG + chr3_2:30840684-30840703 None:intergenic 15.0%
!!! GAGTTTTTTAATCTTTTTTA+AGG - chr3_2:30841111-30841130 Msa0402550:intron 15.0%
!!! TTACTTGATAATTATGATTT+TGG - chr3_2:30842096-30842115 Msa0402550:CDS 15.0%
!! AGAGTTATTATTAAATGATT+CGG - chr3_2:30842225-30842244 Msa0402550:five_prime_UTR 15.0%
!!! GAAATATTTTGAATTCGATT+TGG - chr3_2:30840612-30840631 Msa0402550:intron 20.0%
!!! AAAACTGTTTTCATAATTTC+TGG + chr3_2:30840799-30840818 None:intergenic 20.0%
!!! AATCAGTTTATTTGGATTTT+TGG - chr3_2:30840850-30840869 Msa0402550:intron 20.0%
!! ATCTCAGTATATTTAAACAT+TGG + chr3_2:30841362-30841381 None:intergenic 20.0%
!!! TAACATGTTCATTTATTTTG+TGG - chr3_2:30841388-30841407 Msa0402550:intron 20.0%
!! AAATTGATTACAATAGTTAC+TGG - chr3_2:30842003-30842022 Msa0402550:CDS 20.0%
!! CTAAAAATGTTATGTACATT+TGG - chr3_2:30842047-30842066 Msa0402550:CDS 20.0%
!! ATAATTATCAAGTAATTAGC+AGG + chr3_2:30842091-30842110 None:intergenic 20.0%
!!! GAAATATTTTGAATTCGATT+TGG - chr3_2:30840612-30840631 Msa0402550:intron 20.0%
!!! AAAACTGTTTTCATAATTTC+TGG + chr3_2:30840799-30840818 None:intergenic 20.0%
!!! AATCAGTTTATTTGGATTTT+TGG - chr3_2:30840850-30840869 Msa0402550:intron 20.0%
!! ATCTCAGTATATTTAAACAT+TGG + chr3_2:30841362-30841381 None:intergenic 20.0%
!!! TAACATGTTCATTTATTTTG+TGG - chr3_2:30841388-30841407 Msa0402550:intron 20.0%
!! AAATTGATTACAATAGTTAC+TGG - chr3_2:30842003-30842022 Msa0402550:CDS 20.0%
!! CTAAAAATGTTATGTACATT+TGG - chr3_2:30842047-30842066 Msa0402550:CDS 20.0%
!! ATAATTATCAAGTAATTAGC+AGG + chr3_2:30842091-30842110 None:intergenic 20.0%
! AAATTGTAAAACCCTAGATT+GGG + chr3_2:30840062-30840081 None:intergenic 25.0%
! TAAATTGTAAAACCCTAGAT+TGG + chr3_2:30840063-30840082 None:intergenic 25.0%
!! TGTCATTTACTTGATCTATA+TGG - chr3_2:30840503-30840522 Msa0402550:CDS 25.0%
! TTTACTTGATCTATATGGTT+TGG - chr3_2:30840508-30840527 Msa0402550:CDS 25.0%
!! ATTTTCGATTAACAGAGTTT+TGG - chr3_2:30840559-30840578 Msa0402550:CDS 25.0%
!!! TTTTGAATTCGATTTGGTTA+AGG - chr3_2:30840618-30840637 Msa0402550:intron 25.0%
!! TGCAGTTGATATAAAGTTTA+GGG - chr3_2:30840711-30840730 Msa0402550:intron 25.0%
! TTTACTTTGTGAAATTGTGA+TGG - chr3_2:30840738-30840757 Msa0402550:intron 25.0%
! GTGCATATAATCAGTTTATT+TGG - chr3_2:30840842-30840861 Msa0402550:intron 25.0%
!!! TTACTCTTTATGTTTTAACC+AGG - chr3_2:30840960-30840979 Msa0402550:intron 25.0%
!! ATAAGTTAAATCTTCTGGTT+TGG - chr3_2:30841022-30841041 Msa0402550:intron 25.0%
!!! CTTTGCTTATTTTCATTTCA+TGG - chr3_2:30841269-30841288 Msa0402550:intron 25.0%
! ATAATGAAAACAGAGAACAA+TGG + chr3_2:30841546-30841565 None:intergenic 25.0%
! AATACATAAACAAGTCAATG+TGG + chr3_2:30841635-30841654 None:intergenic 25.0%
!!! TAATTATGATTTTGGCACTA+TGG - chr3_2:30842104-30842123 Msa0402550:CDS 25.0%
!! ATTGCTTGGATTTTCATTTA+GGG - chr3_2:30842161-30842180 Msa0402550:CDS 25.0%
! AAATTGTAAAACCCTAGATT+GGG + chr3_2:30840062-30840081 None:intergenic 25.0%
! TAAATTGTAAAACCCTAGAT+TGG + chr3_2:30840063-30840082 None:intergenic 25.0%
!! TGTCATTTACTTGATCTATA+TGG - chr3_2:30840503-30840522 Msa0402550:CDS 25.0%
! TTTACTTGATCTATATGGTT+TGG - chr3_2:30840508-30840527 Msa0402550:CDS 25.0%
!! ATTTTCGATTAACAGAGTTT+TGG - chr3_2:30840559-30840578 Msa0402550:CDS 25.0%
!!! TTTTGAATTCGATTTGGTTA+AGG - chr3_2:30840618-30840637 Msa0402550:intron 25.0%
!! TGCAGTTGATATAAAGTTTA+GGG - chr3_2:30840711-30840730 Msa0402550:intron 25.0%
! TTTACTTTGTGAAATTGTGA+TGG - chr3_2:30840738-30840757 Msa0402550:intron 25.0%
! GTGCATATAATCAGTTTATT+TGG - chr3_2:30840842-30840861 Msa0402550:intron 25.0%
!!! TTACTCTTTATGTTTTAACC+AGG - chr3_2:30840960-30840979 Msa0402550:intron 25.0%
!! ATAAGTTAAATCTTCTGGTT+TGG - chr3_2:30841022-30841041 Msa0402550:intron 25.0%
!!! CTTTGCTTATTTTCATTTCA+TGG - chr3_2:30841269-30841288 Msa0402550:intron 25.0%
! ATAATGAAAACAGAGAACAA+TGG + chr3_2:30841546-30841565 None:intergenic 25.0%
! AATACATAAACAAGTCAATG+TGG + chr3_2:30841635-30841654 None:intergenic 25.0%
!!! TAATTATGATTTTGGCACTA+TGG - chr3_2:30842104-30842123 Msa0402550:CDS 25.0%
!! ATTGCTTGGATTTTCATTTA+GGG - chr3_2:30842161-30842180 Msa0402550:CDS 25.0%
CAATTTACTCAAAACCCTAA+TGG - chr3_2:30840076-30840095 Msa0402550:three_prime_UTR 30.0%
AAAAATCAGTGGAAGAAGAA+AGG - chr3_2:30840270-30840289 Msa0402550:CDS 30.0%
AGGTGATGAAAAAGAAGAAA+AGG - chr3_2:30840316-30840335 Msa0402550:CDS 30.0%
! AAAGAAGAACCAAACGTTTT+GGG + chr3_2:30840368-30840387 None:intergenic 30.0%
TTCACAAATTTCTTCATGCT+TGG - chr3_2:30840405-30840424 Msa0402550:CDS 30.0%
! GTGCAGTTGATATAAAGTTT+AGG - chr3_2:30840710-30840729 Msa0402550:intron 30.0%
GCTTGATAAGTTAAATCTTC+TGG - chr3_2:30841017-30841036 Msa0402550:intron 30.0%
!! GCTTATTTTCATTTCATGGT+TGG - chr3_2:30841273-30841292 Msa0402550:intron 30.0%
CAAATCATCTATGGTTTAAG+AGG + chr3_2:30841467-30841486 None:intergenic 30.0%
CTCTTAAACCATAGATGATT+TGG - chr3_2:30841465-30841484 Msa0402550:intron 30.0%
!! TAAACCATAGATGATTTGGT+CGG - chr3_2:30841469-30841488 Msa0402550:intron 30.0%
TTATATGATCCACACACTTT+CGG + chr3_2:30841826-30841845 None:intergenic 30.0%
! ACTGGTGTTTAGTGTTTTAT+TGG - chr3_2:30842021-30842040 Msa0402550:CDS 30.0%
!! CTGGTGTTTAGTGTTTTATT+GGG - chr3_2:30842022-30842041 Msa0402550:CDS 30.0%
AAATGTTATGTACATTTGGC+TGG - chr3_2:30842051-30842070 Msa0402550:CDS 30.0%
!!! TTTTGGGTTATATCATTGCT+TGG - chr3_2:30842147-30842166 Msa0402550:CDS 30.0%
! CATTGCTTGGATTTTCATTT+AGG - chr3_2:30842160-30842179 Msa0402550:CDS 30.0%
! TTGCTTGGATTTTCATTTAG+GGG - chr3_2:30842162-30842181 Msa0402550:CDS 30.0%
!! TTAAATGATTCGGTTCATGA+CGG - chr3_2:30842235-30842254 Msa0402550:five_prime_UTR 30.0%
CAATTTACTCAAAACCCTAA+TGG - chr3_2:30840076-30840095 Msa0402550:three_prime_UTR 30.0%
AAAAATCAGTGGAAGAAGAA+AGG - chr3_2:30840270-30840289 Msa0402550:CDS 30.0%
AGGTGATGAAAAAGAAGAAA+AGG - chr3_2:30840316-30840335 Msa0402550:CDS 30.0%
! AAAGAAGAACCAAACGTTTT+GGG + chr3_2:30840368-30840387 None:intergenic 30.0%
TTCACAAATTTCTTCATGCT+TGG - chr3_2:30840405-30840424 Msa0402550:CDS 30.0%
! GTGCAGTTGATATAAAGTTT+AGG - chr3_2:30840710-30840729 Msa0402550:intron 30.0%
GCTTGATAAGTTAAATCTTC+TGG - chr3_2:30841017-30841036 Msa0402550:intron 30.0%
!! GCTTATTTTCATTTCATGGT+TGG - chr3_2:30841273-30841292 Msa0402550:intron 30.0%
CAAATCATCTATGGTTTAAG+AGG + chr3_2:30841467-30841486 None:intergenic 30.0%
CTCTTAAACCATAGATGATT+TGG - chr3_2:30841465-30841484 Msa0402550:intron 30.0%
!! TAAACCATAGATGATTTGGT+CGG - chr3_2:30841469-30841488 Msa0402550:intron 30.0%
TTATATGATCCACACACTTT+CGG + chr3_2:30841826-30841845 None:intergenic 30.0%
! ACTGGTGTTTAGTGTTTTAT+TGG - chr3_2:30842021-30842040 Msa0402550:CDS 30.0%
!! CTGGTGTTTAGTGTTTTATT+GGG - chr3_2:30842022-30842041 Msa0402550:CDS 30.0%
AAATGTTATGTACATTTGGC+TGG - chr3_2:30842051-30842070 Msa0402550:CDS 30.0%
!!! TTTTGGGTTATATCATTGCT+TGG - chr3_2:30842147-30842166 Msa0402550:CDS 30.0%
! CATTGCTTGGATTTTCATTT+AGG - chr3_2:30842160-30842179 Msa0402550:CDS 30.0%
! TTGCTTGGATTTTCATTTAG+GGG - chr3_2:30842162-30842181 Msa0402550:CDS 30.0%
!! TTAAATGATTCGGTTCATGA+CGG - chr3_2:30842235-30842254 Msa0402550:five_prime_UTR 30.0%
! GTTTTCAACTTCCATGTCTA+CGG + chr3_2:30840153-30840172 None:intergenic 35.0%
!! AAAGAAGAAAAGGAAGCATC+TGG - chr3_2:30840326-30840345 Msa0402550:CDS 35.0%
! CAAAGAAGAACCAAACGTTT+TGG + chr3_2:30840369-30840388 None:intergenic 35.0%
!! CAAAACGTTTGGTTCTTCTT+TGG - chr3_2:30840367-30840386 Msa0402550:CDS 35.0%
!!! ATCCTTTTGATGAGTGTTGA+GGG - chr3_2:30841147-30841166 Msa0402550:intron 35.0%
TCATTGTCATGACACACATA+GGG + chr3_2:30841232-30841251 None:intergenic 35.0%
ATCATTGTCATGACACACAT+AGG + chr3_2:30841233-30841252 None:intergenic 35.0%
TGACAATGATGTTGACAACT+CGG - chr3_2:30841243-30841262 Msa0402550:intron 35.0%
GTAGCAGTTCAAACATTATG+TGG + chr3_2:30841340-30841359 None:intergenic 35.0%
TCTATGGTTTAAGAGGACTA+CGG + chr3_2:30841460-30841479 None:intergenic 35.0%
GATTTCAATTGCATCTCTTC+TGG + chr3_2:30841857-30841876 None:intergenic 35.0%
AGAGATGCAATTGAAATCTG+AGG - chr3_2:30841859-30841878 Msa0402550:CDS 35.0%
GAGATGCAATTGAAATCTGA+GGG - chr3_2:30841860-30841879 Msa0402550:CDS 35.0%
AGATGCAATTGAAATCTGAG+GGG - chr3_2:30841861-30841880 Msa0402550:CDS 35.0%
AAACGTACCACAAACTGAAA+TGG - chr3_2:30842189-30842208 Msa0402550:five_prime_UTR 35.0%
! GTTTTCAACTTCCATGTCTA+CGG + chr3_2:30840153-30840172 None:intergenic 35.0%
!! AAAGAAGAAAAGGAAGCATC+TGG - chr3_2:30840326-30840345 Msa0402550:CDS 35.0%
! CAAAGAAGAACCAAACGTTT+TGG + chr3_2:30840369-30840388 None:intergenic 35.0%
!! CAAAACGTTTGGTTCTTCTT+TGG - chr3_2:30840367-30840386 Msa0402550:CDS 35.0%
!!! ATCCTTTTGATGAGTGTTGA+GGG - chr3_2:30841147-30841166 Msa0402550:intron 35.0%
TCATTGTCATGACACACATA+GGG + chr3_2:30841232-30841251 None:intergenic 35.0%
ATCATTGTCATGACACACAT+AGG + chr3_2:30841233-30841252 None:intergenic 35.0%
TGACAATGATGTTGACAACT+CGG - chr3_2:30841243-30841262 Msa0402550:intron 35.0%
GTAGCAGTTCAAACATTATG+TGG + chr3_2:30841340-30841359 None:intergenic 35.0%
TCTATGGTTTAAGAGGACTA+CGG + chr3_2:30841460-30841479 None:intergenic 35.0%
GATTTCAATTGCATCTCTTC+TGG + chr3_2:30841857-30841876 None:intergenic 35.0%
AGAGATGCAATTGAAATCTG+AGG - chr3_2:30841859-30841878 Msa0402550:CDS 35.0%
GAGATGCAATTGAAATCTGA+GGG - chr3_2:30841860-30841879 Msa0402550:CDS 35.0%
AGATGCAATTGAAATCTGAG+GGG - chr3_2:30841861-30841880 Msa0402550:CDS 35.0%
AAACGTACCACAAACTGAAA+TGG - chr3_2:30842189-30842208 Msa0402550:five_prime_UTR 35.0%
AACCCTAGATTGGGATAGTT+GGG + chr3_2:30840053-30840072 None:intergenic 40.0%
AAACCCTAGATTGGGATAGT+TGG + chr3_2:30840054-30840073 None:intergenic 40.0%
AGTAGACGAGGAAAAATCAG+TGG - chr3_2:30840259-30840278 Msa0402550:exon 40.0%
ATCAGTGGAAGAAGAAAGGT+TGG - chr3_2:30840274-30840293 Msa0402550:CDS 40.0%
AGAAGAAAGGTTGGAGAAGT+TGG - chr3_2:30840283-30840302 Msa0402550:CDS 40.0%
GAGAAGTTGGAGAAAAACGA+AGG - chr3_2:30840296-30840315 Msa0402550:CDS 40.0%
! AGCATCTGGTGATGTGAAAT+TGG - chr3_2:30840340-30840359 Msa0402550:CDS 40.0%
! GCATCTGGTGATGTGAAATT+GGG - chr3_2:30840341-30840360 Msa0402550:CDS 40.0%
AAATTGGGACCCAAAACGTT+TGG - chr3_2:30840356-30840375 Msa0402550:CDS 40.0%
TTGTTCACGTTGAGATTCTG+AGG + chr3_2:30840431-30840450 None:intergenic 40.0%
TCAGAATCTCAACGTGAACA+AGG - chr3_2:30840430-30840449 Msa0402550:CDS 40.0%
! AACCAGGACAGTAAGTTGAA+AGG - chr3_2:30840976-30840995 Msa0402550:intron 40.0%
ACTCATCAAAAGGATGAGTG+TGG + chr3_2:30841142-30841161 None:intergenic 40.0%
!! CATCCTTTTGATGAGTGTTG+AGG - chr3_2:30841146-30841165 Msa0402550:intron 40.0%
ACATAGTTGTGTGAAACCAC+AGG - chr3_2:30841188-30841207 Msa0402550:intron 40.0%
CATAGTTGTGTGAAACCACA+GGG - chr3_2:30841189-30841208 Msa0402550:intron 40.0%
ATAAATGCTGATCTCGCTTG+TGG - chr3_2:30841421-30841440 Msa0402550:intron 40.0%
GTTACCGACCAAATCATCTA+TGG + chr3_2:30841476-30841495 None:intergenic 40.0%
!! CCAACCAAGGCTTTAAGATA+GGG + chr3_2:30841502-30841521 None:intergenic 40.0%
!! TCCAACCAAGGCTTTAAGAT+AGG + chr3_2:30841503-30841522 None:intergenic 40.0%
AACTGTCTCATATCCAACCA+AGG + chr3_2:30841515-30841534 None:intergenic 40.0%
TTGCTGGAATTGCTCAAGAA+TGG - chr3_2:30841674-30841693 Msa0402550:intron 40.0%
TGCTGGAATTGCTCAAGAAT+GGG - chr3_2:30841675-30841694 Msa0402550:intron 40.0%
GCAGAACCTGATAGAAAGAT+TGG - chr3_2:30841701-30841720 Msa0402550:intron 40.0%
CTGATAGAAAGATTGGCGTA+GGG - chr3_2:30841708-30841727 Msa0402550:intron 40.0%
!! TAGGTGCTATTTCCTCATCA+GGG - chr3_2:30841772-30841791 Msa0402550:intron 40.0%
AATTGCATCTCTTCTGGCAA+GGG + chr3_2:30841851-30841870 None:intergenic 40.0%
!! GGAAAGCATTATGGAGGAAA+TGG - chr3_2:30841911-30841930 Msa0402550:CDS 40.0%
AAGCATTATGGAGGAAATGG+TGG - chr3_2:30841914-30841933 Msa0402550:CDS 40.0%
CACACAACCATTTCAGTTTG+TGG + chr3_2:30842199-30842218 None:intergenic 40.0%
AACCCTAGATTGGGATAGTT+GGG + chr3_2:30840053-30840072 None:intergenic 40.0%
AAACCCTAGATTGGGATAGT+TGG + chr3_2:30840054-30840073 None:intergenic 40.0%
AGTAGACGAGGAAAAATCAG+TGG - chr3_2:30840259-30840278 Msa0402550:exon 40.0%
ATCAGTGGAAGAAGAAAGGT+TGG - chr3_2:30840274-30840293 Msa0402550:CDS 40.0%
AGAAGAAAGGTTGGAGAAGT+TGG - chr3_2:30840283-30840302 Msa0402550:CDS 40.0%
GAGAAGTTGGAGAAAAACGA+AGG - chr3_2:30840296-30840315 Msa0402550:CDS 40.0%
! AGCATCTGGTGATGTGAAAT+TGG - chr3_2:30840340-30840359 Msa0402550:CDS 40.0%
! GCATCTGGTGATGTGAAATT+GGG - chr3_2:30840341-30840360 Msa0402550:CDS 40.0%
AAATTGGGACCCAAAACGTT+TGG - chr3_2:30840356-30840375 Msa0402550:CDS 40.0%
TTGTTCACGTTGAGATTCTG+AGG + chr3_2:30840431-30840450 None:intergenic 40.0%
TCAGAATCTCAACGTGAACA+AGG - chr3_2:30840430-30840449 Msa0402550:CDS 40.0%
! AACCAGGACAGTAAGTTGAA+AGG - chr3_2:30840976-30840995 Msa0402550:intron 40.0%
ACTCATCAAAAGGATGAGTG+TGG + chr3_2:30841142-30841161 None:intergenic 40.0%
!! CATCCTTTTGATGAGTGTTG+AGG - chr3_2:30841146-30841165 Msa0402550:intron 40.0%
ACATAGTTGTGTGAAACCAC+AGG - chr3_2:30841188-30841207 Msa0402550:intron 40.0%
CATAGTTGTGTGAAACCACA+GGG - chr3_2:30841189-30841208 Msa0402550:intron 40.0%
ATAAATGCTGATCTCGCTTG+TGG - chr3_2:30841421-30841440 Msa0402550:intron 40.0%
GTTACCGACCAAATCATCTA+TGG + chr3_2:30841476-30841495 None:intergenic 40.0%
!! CCAACCAAGGCTTTAAGATA+GGG + chr3_2:30841502-30841521 None:intergenic 40.0%
!! TCCAACCAAGGCTTTAAGAT+AGG + chr3_2:30841503-30841522 None:intergenic 40.0%
AACTGTCTCATATCCAACCA+AGG + chr3_2:30841515-30841534 None:intergenic 40.0%
TTGCTGGAATTGCTCAAGAA+TGG - chr3_2:30841674-30841693 Msa0402550:intron 40.0%
TGCTGGAATTGCTCAAGAAT+GGG - chr3_2:30841675-30841694 Msa0402550:intron 40.0%
GCAGAACCTGATAGAAAGAT+TGG - chr3_2:30841701-30841720 Msa0402550:intron 40.0%
CTGATAGAAAGATTGGCGTA+GGG - chr3_2:30841708-30841727 Msa0402550:intron 40.0%
!! TAGGTGCTATTTCCTCATCA+GGG - chr3_2:30841772-30841791 Msa0402550:intron 40.0%
AATTGCATCTCTTCTGGCAA+GGG + chr3_2:30841851-30841870 None:intergenic 40.0%
!! GGAAAGCATTATGGAGGAAA+TGG - chr3_2:30841911-30841930 Msa0402550:CDS 40.0%
AAGCATTATGGAGGAAATGG+TGG - chr3_2:30841914-30841933 Msa0402550:CDS 40.0%
CACACAACCATTTCAGTTTG+TGG + chr3_2:30842199-30842218 None:intergenic 40.0%
!! CTTTGTTCGTGGGTTAGACT+CGG + chr3_2:30840019-30840038 None:intergenic 45.0%
ACTCCCAACTATCCCAATCT+AGG - chr3_2:30840047-30840066 Msa0402550:three_prime_UTR 45.0%
CTCCCAACTATCCCAATCTA+GGG - chr3_2:30840048-30840067 Msa0402550:three_prime_UTR 45.0%
AGCGGTTTCTTCTGCCATTA+GGG + chr3_2:30840093-30840112 None:intergenic 45.0%
TGTGTTGGGATCGACGATTT+CGG + chr3_2:30840117-30840136 None:intergenic 45.0%
TTCAACTTCCATGTCTACGG+TGG + chr3_2:30840150-30840169 None:intergenic 45.0%
GAAGAAGGCTAAAGTAGACG+AGG - chr3_2:30840247-30840266 Msa0402550:three_prime_UTR 45.0%
CTCCTTTCAACTTACTGTCC+TGG + chr3_2:30840981-30841000 None:intergenic 45.0%
AAGGAGACGCATAAGCTGTT+TGG - chr3_2:30840995-30841014 Msa0402550:intron 45.0%
AGCCCTCAACACTCATCAAA+AGG + chr3_2:30841152-30841171 None:intergenic 45.0%
GTTGAGGGCTAATCAAGACA+TGG - chr3_2:30841162-30841181 Msa0402550:intron 45.0%
TGTCATGACACACATAGGGT+CGG + chr3_2:30841228-30841247 None:intergenic 45.0%
!! CCAAGGCTTTAAGATAGGGT+TGG + chr3_2:30841498-30841517 None:intergenic 45.0%
CCAACCCTATCTTAAAGCCT+TGG - chr3_2:30841495-30841514 Msa0402550:intron 45.0%
CCCTATCTTAAAGCCTTGGT+TGG - chr3_2:30841499-30841518 Msa0402550:intron 45.0%
CCTACGCCAATCTTTCTATC+AGG + chr3_2:30841710-30841729 None:intergenic 45.0%
CCTGATAGAAAGATTGGCGT+AGG - chr3_2:30841707-30841726 Msa0402550:intron 45.0%
AGCACCTACTGTTATAGCGA+GGG + chr3_2:30841760-30841779 None:intergenic 45.0%
TAGCACCTACTGTTATAGCG+AGG + chr3_2:30841761-30841780 None:intergenic 45.0%
!! GTAGGTGCTATTTCCTCATC+AGG - chr3_2:30841771-30841790 Msa0402550:intron 45.0%
! TTTCAGCTTCCGAAAGTGTG+TGG - chr3_2:30841814-30841833 Msa0402550:intron 45.0%
CAATTGCATCTCTTCTGGCA+AGG + chr3_2:30841852-30841871 None:intergenic 45.0%
TCTGAGGGGAACAAGAAGTT+TGG - chr3_2:30841875-30841894 Msa0402550:CDS 45.0%
!! AACAAGAAGTTTGGTGGTGG+TGG - chr3_2:30841884-30841903 Msa0402550:CDS 45.0%
!! CTTTGTTCGTGGGTTAGACT+CGG + chr3_2:30840019-30840038 None:intergenic 45.0%
ACTCCCAACTATCCCAATCT+AGG - chr3_2:30840047-30840066 Msa0402550:three_prime_UTR 45.0%
CTCCCAACTATCCCAATCTA+GGG - chr3_2:30840048-30840067 Msa0402550:three_prime_UTR 45.0%
AGCGGTTTCTTCTGCCATTA+GGG + chr3_2:30840093-30840112 None:intergenic 45.0%
TGTGTTGGGATCGACGATTT+CGG + chr3_2:30840117-30840136 None:intergenic 45.0%
TTCAACTTCCATGTCTACGG+TGG + chr3_2:30840150-30840169 None:intergenic 45.0%
GAAGAAGGCTAAAGTAGACG+AGG - chr3_2:30840247-30840266 Msa0402550:three_prime_UTR 45.0%
CTCCTTTCAACTTACTGTCC+TGG + chr3_2:30840981-30841000 None:intergenic 45.0%
AAGGAGACGCATAAGCTGTT+TGG - chr3_2:30840995-30841014 Msa0402550:intron 45.0%
AGCCCTCAACACTCATCAAA+AGG + chr3_2:30841152-30841171 None:intergenic 45.0%
GTTGAGGGCTAATCAAGACA+TGG - chr3_2:30841162-30841181 Msa0402550:intron 45.0%
TGTCATGACACACATAGGGT+CGG + chr3_2:30841228-30841247 None:intergenic 45.0%
!! CCAAGGCTTTAAGATAGGGT+TGG + chr3_2:30841498-30841517 None:intergenic 45.0%
CCAACCCTATCTTAAAGCCT+TGG - chr3_2:30841495-30841514 Msa0402550:intron 45.0%
CCCTATCTTAAAGCCTTGGT+TGG - chr3_2:30841499-30841518 Msa0402550:intron 45.0%
CCTACGCCAATCTTTCTATC+AGG + chr3_2:30841710-30841729 None:intergenic 45.0%
CCTGATAGAAAGATTGGCGT+AGG - chr3_2:30841707-30841726 Msa0402550:intron 45.0%
AGCACCTACTGTTATAGCGA+GGG + chr3_2:30841760-30841779 None:intergenic 45.0%
TAGCACCTACTGTTATAGCG+AGG + chr3_2:30841761-30841780 None:intergenic 45.0%
!! GTAGGTGCTATTTCCTCATC+AGG - chr3_2:30841771-30841790 Msa0402550:intron 45.0%
! TTTCAGCTTCCGAAAGTGTG+TGG - chr3_2:30841814-30841833 Msa0402550:intron 45.0%
CAATTGCATCTCTTCTGGCA+AGG + chr3_2:30841852-30841871 None:intergenic 45.0%
TCTGAGGGGAACAAGAAGTT+TGG - chr3_2:30841875-30841894 Msa0402550:CDS 45.0%
!! AACAAGAAGTTTGGTGGTGG+TGG - chr3_2:30841884-30841903 Msa0402550:CDS 45.0%
!! GTGTTCGTGGCTTTGTTCGT+GGG + chr3_2:30840029-30840048 None:intergenic 50.0%
!! AGTGTTCGTGGCTTTGTTCG+TGG + chr3_2:30840030-30840049 None:intergenic 50.0%
GAGCGGTTTCTTCTGCCATT+AGG + chr3_2:30840094-30840113 None:intergenic 50.0%
GTGTTGGGATCGACGATTTC+GGG + chr3_2:30840116-30840135 None:intergenic 50.0%
AACTTCCATGTCTACGGTGG+CGG + chr3_2:30840147-30840166 None:intergenic 50.0%
! AGTCCAAAGAAAAGCGTGCC+AGG - chr3_2:30840180-30840199 Msa0402550:three_prime_UTR 50.0%
! GTCCAAAGAAAAGCGTGCCA+GGG - chr3_2:30840181-30840200 Msa0402550:three_prime_UTR 50.0%
! TTCCCTGGCACGCTTTTCTT+TGG + chr3_2:30840186-30840205 None:intergenic 50.0%
CTCTGCTTCTTCTTCTTCCC+TGG + chr3_2:30840201-30840220 None:intergenic 50.0%
GAAACCACGTCGTCGTCTTT+GGG + chr3_2:30840227-30840246 None:intergenic 50.0%
GTTGTGTGAAACCACAGGGT+TGG - chr3_2:30841193-30841212 Msa0402550:intron 50.0%
GGTTTAACAAGCCAACCCTG+TGG + chr3_2:30841207-30841226 None:intergenic 50.0%
TGCTGATCTCGCTTGTGGTT+TGG - chr3_2:30841426-30841445 Msa0402550:intron 50.0%
GTATGAGCACACGATGTTGC+TGG - chr3_2:30841658-30841677 Msa0402550:intron 50.0%
ACCACCCTCGCTATAACAGT+AGG - chr3_2:30841753-30841772 Msa0402550:intron 50.0%
ACCTACTGTTATAGCGAGGG+TGG + chr3_2:30841757-30841776 None:intergenic 50.0%
CAGTGTCATCTTCCCTGATG+AGG + chr3_2:30841787-30841806 None:intergenic 50.0%
GAGGGGAACAAGAAGTTTGG+TGG - chr3_2:30841878-30841897 Msa0402550:CDS 50.0%
! GGGAACAAGAAGTTTGGTGG+TGG - chr3_2:30841881-30841900 Msa0402550:CDS 50.0%
!! AAGAAGTTTGGTGGTGGTGG+TGG - chr3_2:30841887-30841906 Msa0402550:CDS 50.0%
!! GGTGGTGGAGGAAAGCATTA+TGG - chr3_2:30841902-30841921 Msa0402550:CDS 50.0%
!! GGTGGAGGAAAGCATTATGG+AGG - chr3_2:30841905-30841924 Msa0402550:CDS 50.0%
TATGGAGGAAATGGTGGCAG+AGG - chr3_2:30841920-30841939 Msa0402550:CDS 50.0%
AGGAAATGGTGGCAGAGGAA+GGG - chr3_2:30841925-30841944 Msa0402550:CDS 50.0%
!! GTGTTCGTGGCTTTGTTCGT+GGG + chr3_2:30840029-30840048 None:intergenic 50.0%
!! AGTGTTCGTGGCTTTGTTCG+TGG + chr3_2:30840030-30840049 None:intergenic 50.0%
GAGCGGTTTCTTCTGCCATT+AGG + chr3_2:30840094-30840113 None:intergenic 50.0%
GTGTTGGGATCGACGATTTC+GGG + chr3_2:30840116-30840135 None:intergenic 50.0%
AACTTCCATGTCTACGGTGG+CGG + chr3_2:30840147-30840166 None:intergenic 50.0%
! AGTCCAAAGAAAAGCGTGCC+AGG - chr3_2:30840180-30840199 Msa0402550:three_prime_UTR 50.0%
! GTCCAAAGAAAAGCGTGCCA+GGG - chr3_2:30840181-30840200 Msa0402550:three_prime_UTR 50.0%
! TTCCCTGGCACGCTTTTCTT+TGG + chr3_2:30840186-30840205 None:intergenic 50.0%
CTCTGCTTCTTCTTCTTCCC+TGG + chr3_2:30840201-30840220 None:intergenic 50.0%
GAAACCACGTCGTCGTCTTT+GGG + chr3_2:30840227-30840246 None:intergenic 50.0%
GTTGTGTGAAACCACAGGGT+TGG - chr3_2:30841193-30841212 Msa0402550:intron 50.0%
GGTTTAACAAGCCAACCCTG+TGG + chr3_2:30841207-30841226 None:intergenic 50.0%
TGCTGATCTCGCTTGTGGTT+TGG - chr3_2:30841426-30841445 Msa0402550:intron 50.0%
GTATGAGCACACGATGTTGC+TGG - chr3_2:30841658-30841677 Msa0402550:intron 50.0%
ACCACCCTCGCTATAACAGT+AGG - chr3_2:30841753-30841772 Msa0402550:intron 50.0%
ACCTACTGTTATAGCGAGGG+TGG + chr3_2:30841757-30841776 None:intergenic 50.0%
CAGTGTCATCTTCCCTGATG+AGG + chr3_2:30841787-30841806 None:intergenic 50.0%
GAGGGGAACAAGAAGTTTGG+TGG - chr3_2:30841878-30841897 Msa0402550:CDS 50.0%
! GGGAACAAGAAGTTTGGTGG+TGG - chr3_2:30841881-30841900 Msa0402550:CDS 50.0%
!! AAGAAGTTTGGTGGTGGTGG+TGG - chr3_2:30841887-30841906 Msa0402550:CDS 50.0%
!! GGTGGTGGAGGAAAGCATTA+TGG - chr3_2:30841902-30841921 Msa0402550:CDS 50.0%
!! GGTGGAGGAAAGCATTATGG+AGG - chr3_2:30841905-30841924 Msa0402550:CDS 50.0%
TATGGAGGAAATGGTGGCAG+AGG - chr3_2:30841920-30841939 Msa0402550:CDS 50.0%
AGGAAATGGTGGCAGAGGAA+GGG - chr3_2:30841925-30841944 Msa0402550:CDS 50.0%
!! TGTTCGTGGGTTAGACTCGG+TGG + chr3_2:30840016-30840035 None:intergenic 55.0%
!! GGGATAGTTGGGAGTGTTCG+TGG + chr3_2:30840042-30840061 None:intergenic 55.0%
GAAACCCAAAGACGACGACG+TGG - chr3_2:30840220-30840239 Msa0402550:three_prime_UTR 55.0%
CGAAACCACGTCGTCGTCTT+TGG + chr3_2:30840228-30840247 None:intergenic 55.0%
CGACGACGTGGTTTCGAAGA+AGG - chr3_2:30840232-30840251 Msa0402550:three_prime_UTR 55.0%
!! AAGTTTGGTGGTGGTGGTGG+AGG - chr3_2:30841890-30841909 Msa0402550:CDS 55.0%
GAGGAAATGGTGGCAGAGGA+AGG - chr3_2:30841924-30841943 Msa0402550:CDS 55.0%
GGAAATGGTGGCAGAGGAAG+GGG - chr3_2:30841926-30841945 Msa0402550:CDS 55.0%
!! TGTTCGTGGGTTAGACTCGG+TGG + chr3_2:30840016-30840035 None:intergenic 55.0%
!! GGGATAGTTGGGAGTGTTCG+TGG + chr3_2:30840042-30840061 None:intergenic 55.0%
GAAACCCAAAGACGACGACG+TGG - chr3_2:30840220-30840239 Msa0402550:three_prime_UTR 55.0%
CGAAACCACGTCGTCGTCTT+TGG + chr3_2:30840228-30840247 None:intergenic 55.0%
CGACGACGTGGTTTCGAAGA+AGG - chr3_2:30840232-30840251 Msa0402550:three_prime_UTR 55.0%
!! AAGTTTGGTGGTGGTGGTGG+AGG - chr3_2:30841890-30841909 Msa0402550:CDS 55.0%
GAGGAAATGGTGGCAGAGGA+AGG - chr3_2:30841924-30841943 Msa0402550:CDS 55.0%
GGAAATGGTGGCAGAGGAAG+GGG - chr3_2:30841926-30841945 Msa0402550:CDS 55.0%
!! TGGGTTAGACTCGGTGGAGC+GGG + chr3_2:30840010-30840029 None:intergenic 60.0%
!! GTGGGTTAGACTCGGTGGAG+CGG + chr3_2:30840011-30840030 None:intergenic 60.0%
GGGATCGACGATTTCGGGAG+CGG + chr3_2:30840111-30840130 None:intergenic 60.0%
AATGGTGGCAGAGGAAGGGG+TGG - chr3_2:30841929-30841948 Msa0402550:CDS 60.0%
AGAGGAAGGGGTGGAAGAGG+AGG - chr3_2:30841938-30841957 Msa0402550:CDS 60.0%
GAAGGGGTGGAAGAGGAGGT+TGG - chr3_2:30841942-30841961 Msa0402550:CDS 60.0%
!! GTGGTGGTGGTCGTGGAAGA+GGG - chr3_2:30841969-30841988 Msa0402550:CDS 60.0%
!! TGGTGGTGGTCGTGGAAGAG+GGG - chr3_2:30841970-30841989 Msa0402550:CDS 60.0%
TGGTCGTGGAAGAGGGGGAA+GGG - chr3_2:30841976-30841995 Msa0402550:CDS 60.0%
!! TGGGTTAGACTCGGTGGAGC+GGG + chr3_2:30840010-30840029 None:intergenic 60.0%
!! GTGGGTTAGACTCGGTGGAG+CGG + chr3_2:30840011-30840030 None:intergenic 60.0%
GGGATCGACGATTTCGGGAG+CGG + chr3_2:30840111-30840130 None:intergenic 60.0%
AATGGTGGCAGAGGAAGGGG+TGG - chr3_2:30841929-30841948 Msa0402550:CDS 60.0%
AGAGGAAGGGGTGGAAGAGG+AGG - chr3_2:30841938-30841957 Msa0402550:CDS 60.0%
GAAGGGGTGGAAGAGGAGGT+TGG - chr3_2:30841942-30841961 Msa0402550:CDS 60.0%
!! GTGGTGGTGGTCGTGGAAGA+GGG - chr3_2:30841969-30841988 Msa0402550:CDS 60.0%
!! TGGTGGTGGTCGTGGAAGAG+GGG - chr3_2:30841970-30841989 Msa0402550:CDS 60.0%
TGGTCGTGGAAGAGGGGGAA+GGG - chr3_2:30841976-30841995 Msa0402550:CDS 60.0%
GTGGCGGCGACGGTTGTGTT+GGG + chr3_2:30840131-30840150 None:intergenic 65.0%
! CATGTCTACGGTGGCGGCGA+CGG + chr3_2:30840141-30840160 None:intergenic 65.0%
AGCGAGGGTGGTCGCGAACT+TGG + chr3_2:30841745-30841764 None:intergenic 65.0%
GGCAGAGGAAGGGGTGGAAG+AGG - chr3_2:30841935-30841954 Msa0402550:CDS 65.0%
GGTGGAAGAGGAGGTTGGCG+CGG - chr3_2:30841947-30841966 Msa0402550:CDS 65.0%
!! GGTGGTGGTGGTCGTGGAAG+AGG - chr3_2:30841968-30841987 Msa0402550:CDS 65.0%
! GGTGGTGGTCGTGGAAGAGG+GGG - chr3_2:30841971-30841990 Msa0402550:CDS 65.0%
GTGGTCGTGGAAGAGGGGGA+AGG - chr3_2:30841975-30841994 Msa0402550:CDS 65.0%
GGTCGTGGAAGAGGGGGAAG+GGG - chr3_2:30841977-30841996 Msa0402550:CDS 65.0%
GTCGTGGAAGAGGGGGAAGG+GGG - chr3_2:30841978-30841997 Msa0402550:CDS 65.0%
GTGGCGGCGACGGTTGTGTT+GGG + chr3_2:30840131-30840150 None:intergenic 65.0%
! CATGTCTACGGTGGCGGCGA+CGG + chr3_2:30840141-30840160 None:intergenic 65.0%
AGCGAGGGTGGTCGCGAACT+TGG + chr3_2:30841745-30841764 None:intergenic 65.0%
GGCAGAGGAAGGGGTGGAAG+AGG - chr3_2:30841935-30841954 Msa0402550:CDS 65.0%
GGTGGAAGAGGAGGTTGGCG+CGG - chr3_2:30841947-30841966 Msa0402550:CDS 65.0%
!! GGTGGTGGTGGTCGTGGAAG+AGG - chr3_2:30841968-30841987 Msa0402550:CDS 65.0%
! GGTGGTGGTCGTGGAAGAGG+GGG - chr3_2:30841971-30841990 Msa0402550:CDS 65.0%
GTGGTCGTGGAAGAGGGGGA+AGG - chr3_2:30841975-30841994 Msa0402550:CDS 65.0%
GGTCGTGGAAGAGGGGGAAG+GGG - chr3_2:30841977-30841996 Msa0402550:CDS 65.0%
GTCGTGGAAGAGGGGGAAGG+GGG - chr3_2:30841978-30841997 Msa0402550:CDS 65.0%
! GGTGGCGGCGACGGTTGTGT+TGG + chr3_2:30840132-30840151 None:intergenic 70.0%
CGTCGCCGCCACCGTAGACA+TGG - chr3_2:30840139-30840158 Msa0402550:three_prime_UTR 70.0%
GGAAGAGGAGGTTGGCGCGG+TGG - chr3_2:30841950-30841969 Msa0402550:CDS 70.0%
AGAGGAGGTTGGCGCGGTGG+TGG - chr3_2:30841953-30841972 Msa0402550:CDS 70.0%
! GGTGGCGGCGACGGTTGTGT+TGG + chr3_2:30840132-30840151 None:intergenic 70.0%
CGTCGCCGCCACCGTAGACA+TGG - chr3_2:30840139-30840158 Msa0402550:three_prime_UTR 70.0%
GGAAGAGGAGGTTGGCGCGG+TGG - chr3_2:30841950-30841969 Msa0402550:CDS 70.0%
AGAGGAGGTTGGCGCGGTGG+TGG - chr3_2:30841953-30841972 Msa0402550:CDS 70.0%
! GGAGGTTGGCGCGGTGGTGG+TGG - chr3_2:30841956-30841975 Msa0402550:CDS 75.0%
!! TGGCGCGGTGGTGGTGGTCG+TGG - chr3_2:30841962-30841981 Msa0402550:CDS 75.0%
! GGAGGTTGGCGCGGTGGTGG+TGG - chr3_2:30841956-30841975 Msa0402550:CDS 75.0%
!! TGGCGCGGTGGTGGTGGTCG+TGG - chr3_2:30841962-30841981 Msa0402550:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 30840000 30842278 30840000 ID=Msa0402550;Name=Msa0402550
chr3_2 mRNA 30840000 30842278 30840000 ID=Msa0402550-mRNA-1;Parent=Msa0402550;Name=Msa0402550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|2|269|235
chr3_2 exon 30840000 30840619 30840000 ID=Msa0402550-mRNA-1:exon:6166;Parent=Msa0402550-mRNA-1
chr3_2 exon 30841827 30842278 30841827 ID=Msa0402550-mRNA-1:exon:6165;Parent=Msa0402550-mRNA-1
chr3_2 five_prime_UTR 30842184 30842278 30842184 ID=Msa0402550-mRNA-1:five_prime_utr;Parent=Msa0402550-mRNA-1
chr3_2 CDS 30841827 30842183 30841827 ID=Msa0402550-mRNA-1:cds;Parent=Msa0402550-mRNA-1
chr3_2 CDS 30840269 30840619 30840269 ID=Msa0402550-mRNA-1:cds;Parent=Msa0402550-mRNA-1
chr3_2 three_prime_UTR 30840000 30840268 30840000 ID=Msa0402550-mRNA-1:three_prime_utr;Parent=Msa0402550-mRNA-1
Gene Sequence

>Msa0402550

ATGGCAGAAGAAACCGCTCCCGAAATCGTCGATCCCAACACAACCGTCGCCGCCACCGTAGACATGGAAGTTGAAAACGTCACTGAGTCCAAAGAAAAGCGTGCCAGGGAAGAAGAAGAAGCAGAGAAACCCAAAGACGACGACGTGGTTTCGAAGAAGGCTAAAGTAGACGAGGAAAAATCAGTGGAAGAAGAAAGGTTGGAGAAGTTGGAGAAAAACGAAGGTGATGAAAAAGAAGAAAAGGAAGCATCTGGTGATGTGAAATTGGGACCCAAAACGTTTGGTTCTTCTTTGGATATGTTTCATTACTTTCACAAATTTCTTCATGCTTGGCCTCAGAATCTCAACGTGAACAAGTATGAGCACACGATGTTGCTGGAATTGCTCAAGAATGGGCATGCAGAACCTGATAGAAAGATTGGCGTAGGGATTTGTGCTTTCCAAGTTCGCGACCACCCTCGCTATAACAGTAGGTGCTATTTCCTCATCAGGGAAGATGACACTGTTGATGATTTCAGCTTCCGAAAGTGTGTGGATCATATAAGTCCCTTGCCAGAAGAGATGCAATTGAAATCTGAGGGGAACAAGAAGTTTGGTGGTGGTGGTGGAGGAAAGCATTATGGAGGAAATGGTGGCAGAGGAAGGGGTGGAAGAGGAGGTTGGCGCGGTGGTGGTGGTCGTGGAAGAGGGGGAAGGGGGAGAAATTGA
Protein sequence

>Msa0402550

MAEETAPEIVDPNTTVAATVDMEVENVTESKEKRAREEEEAEKPKDDDVVSKKAKVDEEKSVEEERLEKLEKNEGDEKEEKEASGDVKLGPKTFGSSLDMFHYFHKFLHAWPQNLNVNKYEHTMLLELLKNGHAEPDRKIGVGICAFQVRDHPRYNSRCYFLIREDDTVDDFSFRKCVDHISPLPEEMQLKSEGNKKFGGGGGGKHYGGNGGRGRGGRGGWRGGGGRGRGGRGRN*