AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0513990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513990 MtrunA17_Chr3g0121631 96.552 116 4 0 1 116 1 116 1.11e-79 232
Msa0513990 MtrunA17_Chr4g0061451 54.545 121 48 3 1 114 1 121 4.30e-38 130
Msa0513990 MtrunA17_Chr7g0219021 48.780 123 58 2 1 118 1 123 6.42e-35 121
Msa0513990 MtrunA17_Chr3g0086861 45.802 131 58 4 1 122 1 127 6.78e-32 117
Msa0513990 MtrunA17_Chr3g0119311 47.368 95 49 1 36 129 36 130 1.03e-26 97.4
Msa0513990 MtrunA17_Chr7g0219031 46.789 109 49 3 1 102 1 107 1.40e-26 96.7
Msa0513990 MtrunA17_Chr7g0266751 45.714 105 53 2 23 123 19 123 1.58e-24 92.0
Msa0513990 MtrunA17_Chr4g0035001 52.632 76 35 1 37 111 7 82 9.98e-24 90.5
Msa0513990 MtrunA17_Chr4g0031091 43.000 100 56 1 15 113 12 111 1.54e-23 88.6
Msa0513990 MtrunA17_Chr4g0035051 49.351 77 38 1 37 112 9 85 6.72e-23 87.0
Msa0513990 MtrunA17_Chr4g0035031 51.316 76 36 1 37 111 9 84 4.31e-22 87.0
Msa0513990 MtrunA17_Chr3g0116631 45.455 88 43 2 37 123 207 290 4.80e-20 83.6
Msa0513990 MtrunA17_Chr2g0278661 50.649 77 37 1 37 112 8 84 8.88e-20 82.0
Msa0513990 MtrunA17_Chr7g0263001 40.496 121 62 4 1 116 1 116 3.88e-19 78.2
Msa0513990 MtrunA17_Chr3g0101061 40.179 112 59 4 11 115 8 118 1.41e-18 80.9
Msa0513990 MtrunA17_Chr1g0181111 50.633 79 38 1 37 114 197 275 1.42e-18 79.7
Msa0513990 MtrunA17_Chr4g0038111 40.385 104 61 1 30 133 333 435 8.28e-18 79.0
Msa0513990 MtrunA17_Chr4g0042161 43.956 91 48 2 31 118 44 134 1.14e-17 74.3
Msa0513990 MtrunA17_Chr1g0198431 37.895 95 55 2 33 126 189 280 1.76e-17 76.6
Msa0513990 MtrunA17_Chr4g0058151 45.570 79 42 1 37 114 217 295 4.95e-17 75.5
Msa0513990 MtrunA17_Chr4g0058151 39.000 100 60 1 37 135 123 222 2.47e-12 62.8
Msa0513990 MtrunA17_Chr4g0050781 41.250 80 46 1 37 115 8 87 1.14e-16 73.2
Msa0513990 MtrunA17_Chr6g0449481 35.455 110 69 2 31 138 128 237 7.44e-16 73.2
Msa0513990 MtrunA17_Chr3g0110211 43.820 89 48 2 36 122 112 200 1.68e-15 72.0
Msa0513990 MtrunA17_Chr1g0168601 46.753 77 40 1 37 112 154 230 2.68e-15 70.1
Msa0513990 MtrunA17_Chr1g0210241 37.647 85 52 1 34 117 5 89 3.00e-15 70.5
Msa0513990 MtrunA17_Chr1g0186351 36.471 85 54 0 32 116 108 192 3.52e-15 71.2
Msa0513990 MtrunA17_Chr1g0186351 37.975 79 48 1 37 115 7 84 1.01e-12 64.3
Msa0513990 MtrunA17_Chr3g0144311 35.714 84 54 0 36 119 29 112 6.22e-15 69.7
Msa0513990 MtrunA17_Chr4g0017401 35.484 93 56 1 36 124 16 108 6.79e-15 69.3
Msa0513990 MtrunA17_Chr7g0268551 40.964 83 48 1 38 119 350 432 7.03e-15 70.5
Msa0513990 MtrunA17_Chr5g0447761 41.250 80 46 1 35 114 5 83 8.89e-15 70.1
Msa0513990 MtrunA17_Chr5g0447761 34.177 79 52 0 37 115 107 185 9.65e-12 61.2
Msa0513990 MtrunA17_Chr1g0201001 36.842 95 54 2 38 126 31 125 1.35e-14 69.7
Msa0513990 MtrunA17_Chr3g0088511 36.170 94 56 3 18 108 13 105 2.32e-14 65.5
Msa0513990 MtrunA17_Chr3g0135111 36.471 85 54 0 31 115 112 196 2.69e-14 68.6
Msa0513990 MtrunA17_Chr3g0135111 38.636 88 53 1 27 114 1 87 5.17e-12 62.0
Msa0513990 MtrunA17_Chr7g0276531 40.580 69 41 0 36 104 18 86 3.07e-14 67.4
Msa0513990 MtrunA17_Chr8g0346011 42.029 69 40 0 36 104 37 105 3.25e-14 67.8
Msa0513990 MtrunA17_Chr2g0327921 38.750 80 48 1 36 114 7 86 3.27e-14 63.9
Msa0513990 MtrunA17_Chr2g0290191 40.244 82 48 1 33 114 1 81 4.83e-14 68.2
Msa0513990 MtrunA17_Chr2g0290191 34.177 79 52 0 33 111 103 181 5.16e-12 62.4
Msa0513990 MtrunA17_Chr6g0481071 35.000 80 51 1 36 114 95 174 5.08e-14 65.9
Msa0513990 MtrunA17_Chr8g0344491 45.333 75 40 1 38 111 149 223 8.12e-14 67.4
Msa0513990 MtrunA17_Chr4g0070231 44.000 75 41 1 38 111 133 207 2.02e-13 66.2
Msa0513990 MtrunA17_Chr4g0065741 38.272 81 49 1 34 113 69 149 4.66e-13 62.8
Msa0513990 MtrunA17_Chr3g0127751 42.029 69 40 0 36 104 26 94 4.70e-13 64.3
Msa0513990 MtrunA17_Chr5g0426311 37.681 69 43 0 36 104 16 84 5.19e-13 64.3
Msa0513990 MtrunA17_Chr1g0153181 36.000 100 58 2 19 112 10 109 5.29e-13 65.1
Msa0513990 MtrunA17_Chr1g0163591 39.796 98 57 2 35 131 161 257 6.96e-13 64.7
Msa0513990 MtrunA17_Chr7g0267571 39.080 87 52 1 34 119 210 296 1.05e-12 63.9
Msa0513990 MtrunA17_Chr7g0267571 32.743 113 72 3 37 146 110 221 7.27e-11 58.5
Msa0513990 MtrunA17_Chr4g0042151 33.913 115 66 4 3 114 16 123 1.60e-12 62.0
Msa0513990 MtrunA17_Chr3g0139111 42.667 75 42 1 38 111 147 221 2.04e-12 63.2
Msa0513990 MtrunA17_Chr8g0360551 43.056 72 41 0 33 104 70 141 2.53e-12 63.2
Msa0513990 MtrunA17_Chr5g0419351 36.250 80 50 1 33 111 7 86 3.34e-12 60.8
Msa0513990 MtrunA17_Chr8g0375101 37.349 83 51 1 33 115 1 82 7.12e-12 61.6
Msa0513990 MtrunA17_Chr5g0430471 27.500 120 72 3 9 124 23 131 7.40e-12 59.3
Msa0513990 MtrunA17_Chr3g0120721 29.801 151 82 4 6 145 88 225 1.05e-11 61.2
Msa0513990 MtrunA17_Chr2g0328791 40.964 83 47 2 38 118 110 192 1.24e-11 61.2
Msa0513990 MtrunA17_Chr4g0044541 37.975 79 48 1 35 112 33 111 1.80e-11 60.8
Msa0513990 MtrunA17_Chr4g0018581 39.024 82 49 1 31 111 446 527 3.13e-11 60.1
Msa0513990 MtrunA17_Chr4g0074711 35.238 105 64 3 31 131 160 264 3.24e-11 59.7
Msa0513990 MtrunA17_Chr5g0402191 37.349 83 51 1 33 115 1 82 7.07e-11 58.9
Msa0513990 MtrunA17_Chr1g0153871 35.870 92 57 2 38 127 192 283 9.53e-11 58.5
Msa0513990 MtrunA17_Chr1g0177101 37.037 81 50 1 34 113 205 285 9.72e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513990 AT3G23830.2 62.295 122 43 3 1 121 1 120 5.84e-48 151
Msa0513990 AT3G23830.1 62.295 122 43 3 1 121 1 120 5.84e-48 151
Msa0513990 AT4G13850.3 62.295 122 43 3 1 121 1 120 3.07e-46 147
Msa0513990 AT4G13850.2 62.295 122 43 3 1 121 1 120 4.05e-46 147
Msa0513990 AT4G13850.1 62.295 122 43 3 1 121 1 120 4.71e-46 147
Msa0513990 AT4G13850.4 63.248 117 41 2 1 116 1 116 8.66e-46 145
Msa0513990 AT5G61030.2 57.983 119 45 2 1 114 1 119 8.11e-42 141
Msa0513990 AT5G61030.1 57.983 119 45 2 1 114 1 119 8.11e-42 141
Msa0513990 AT1G74230.1 55.752 113 48 1 1 113 1 111 1.42e-38 132
Msa0513990 AT5G47320.1 58.772 114 41 3 1 113 1 109 2.71e-35 122
Msa0513990 AT3G08000.1 47.899 119 54 2 9 119 7 125 1.50e-28 102
Msa0513990 AT5G06210.1 49.495 99 40 2 35 132 33 122 1.58e-23 89.7
Msa0513990 AT2G21660.2 49.351 77 38 1 37 112 9 85 1.27e-21 85.5
Msa0513990 AT2G21660.1 49.351 77 38 1 37 112 9 85 1.90e-21 85.5
Msa0513990 AT5G59865.1 50.000 84 41 1 34 116 24 107 5.24e-21 82.4
Msa0513990 AT2G37220.1 51.765 85 37 2 37 120 205 286 9.59e-21 85.9
Msa0513990 AT2G37220.1 39.785 93 51 2 37 128 92 180 7.93e-12 61.6
Msa0513990 AT3G53460.1 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0513990 AT3G53460.3 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0513990 AT3G53460.2 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0513990 AT3G53460.4 51.807 83 39 1 37 118 279 361 1.75e-20 86.3
Msa0513990 AT4G39260.3 42.169 83 47 1 37 118 7 89 1.11e-19 78.6
Msa0513990 AT3G26420.1 44.330 97 53 1 37 132 8 104 3.17e-19 81.3
Msa0513990 AT1G18630.1 41.228 114 61 3 1 112 4 113 6.10e-19 78.2
Msa0513990 AT4G24770.1 47.126 87 42 2 37 122 245 328 7.81e-19 81.3
Msa0513990 AT4G24770.1 36.283 113 71 1 23 134 137 249 1.43e-12 63.9
Msa0513990 AT4G24770.2 47.126 87 42 2 37 122 245 328 7.81e-19 81.3
Msa0513990 AT4G24770.2 36.283 113 71 1 23 134 137 249 1.43e-12 63.9
Msa0513990 AT5G50250.1 45.570 79 42 1 37 114 208 286 5.07e-18 78.6
Msa0513990 AT5G50250.1 37.624 101 62 1 36 135 113 213 2.84e-12 62.8
Msa0513990 AT3G46020.1 45.000 80 43 1 35 113 6 85 1.58e-17 73.2
Msa0513990 AT4G39260.2 42.105 76 43 1 37 111 7 82 1.72e-17 73.9
Msa0513990 AT2G37510.1 46.753 77 40 1 33 108 31 107 4.09e-17 73.2
Msa0513990 AT4G39260.1 42.105 76 43 1 37 111 7 82 4.61e-17 73.9
Msa0513990 AT4G13860.1 48.000 75 38 1 35 108 2 76 9.65e-17 70.9
Msa0513990 AT1G60000.1 51.899 79 37 1 34 111 175 253 4.85e-16 72.8
Msa0513990 AT5G55550.5 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0513990 AT5G55550.5 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0513990 AT5G55550.4 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0513990 AT5G55550.4 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0513990 AT5G55550.9 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0513990 AT5G55550.9 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0513990 AT5G55550.7 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0513990 AT5G55550.7 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0513990 AT5G55550.1 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0513990 AT5G55550.1 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0513990 AT5G55550.2 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0513990 AT5G55550.2 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0513990 AT5G55550.3 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0513990 AT5G55550.3 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0513990 AT5G55550.6 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0513990 AT5G55550.6 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0513990 AT5G55550.11 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0513990 AT5G55550.11 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0513990 AT3G20930.1 37.234 94 58 1 33 125 279 372 1.38e-15 72.8
Msa0513990 AT1G60650.2 39.216 102 57 2 35 131 11 112 2.13e-15 71.6
Msa0513990 AT1G60650.1 39.216 102 57 2 35 131 11 112 2.13e-15 71.6
Msa0513990 AT1G76460.1 37.363 91 54 1 36 126 24 111 2.43e-15 71.2
Msa0513990 AT5G55550.8 45.714 70 37 1 37 106 7 75 2.91e-15 72.0
Msa0513990 AT5G55550.8 29.703 101 71 0 35 135 156 256 9.21e-12 62.0
Msa0513990 AT5G55550.10 45.714 70 37 1 37 106 7 75 2.95e-15 72.0
Msa0513990 AT5G55550.10 29.703 101 71 0 35 135 156 256 8.33e-12 62.0
Msa0513990 AT5G54580.1 36.752 117 62 3 3 115 28 136 3.08e-15 68.9
Msa0513990 AT2G46780.1 37.234 94 54 1 36 124 22 115 3.93e-15 71.2
Msa0513990 AT2G46780.2 37.234 94 54 1 36 124 22 115 3.93e-15 71.2
Msa0513990 AT1G48920.1 41.748 103 54 1 35 131 296 398 5.08e-15 71.2
Msa0513990 AT3G07810.1 41.026 78 45 1 37 114 7 83 6.67e-15 70.9
Msa0513990 AT3G07810.1 35.714 98 59 2 35 128 107 204 1.46e-11 61.2
Msa0513990 AT3G07810.2 41.026 78 45 1 37 114 7 83 7.07e-15 70.9
Msa0513990 AT3G07810.2 35.714 98 59 2 35 128 107 204 1.55e-11 61.2
Msa0513990 AT2G18510.1 42.697 89 49 2 36 122 112 200 1.04e-14 70.1
Msa0513990 AT1G22330.1 36.111 108 63 2 36 143 17 118 1.12e-14 69.3
Msa0513990 AT4G26650.2 42.308 78 44 1 37 114 13 89 1.34e-14 70.1
Msa0513990 AT4G26650.2 34.568 81 53 0 35 115 118 198 2.40e-12 63.5
Msa0513990 AT3G52380.1 44.578 83 45 1 34 115 217 299 1.35e-14 69.7
Msa0513990 AT4G26650.1 42.308 78 44 1 37 114 16 92 1.37e-14 70.1
Msa0513990 AT4G26650.1 34.568 81 53 0 35 115 121 201 2.55e-12 63.5
Msa0513990 AT1G22910.2 36.559 93 55 1 36 124 13 105 1.48e-14 68.6
Msa0513990 AT1G33470.3 42.029 69 40 0 36 104 7 75 1.55e-14 68.6
Msa0513990 AT1G33470.2 42.029 69 40 0 36 104 7 75 1.56e-14 68.6
Msa0513990 AT1G33470.1 42.029 69 40 0 36 104 7 75 1.61e-14 68.6
Msa0513990 AT3G13224.3 38.889 90 54 1 28 116 92 181 1.74e-14 69.3
Msa0513990 AT1G22910.1 36.559 93 55 1 36 124 13 105 1.82e-14 68.6
Msa0513990 AT3G13224.2 38.889 90 54 1 28 116 101 190 1.95e-14 69.3
Msa0513990 AT1G20880.2 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0513990 AT1G20880.3 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0513990 AT1G20880.1 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0513990 AT1G22910.3 36.559 93 55 1 36 124 13 105 4.12e-14 68.2
Msa0513990 AT5G47620.1 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0513990 AT5G47620.1 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0513990 AT5G47620.2 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0513990 AT5G47620.2 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0513990 AT5G47620.5 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0513990 AT5G47620.5 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0513990 AT3G13224.1 48.529 68 35 0 28 95 101 168 4.57e-14 67.0
Msa0513990 AT1G54080.1 42.667 75 42 1 38 111 150 224 5.06e-14 68.2
Msa0513990 AT2G27330.1 32.632 95 63 1 35 128 20 114 5.67e-14 64.3
Msa0513990 AT3G14100.1 42.667 75 42 1 38 111 146 220 6.90e-14 67.8
Msa0513990 AT2G22100.1 36.264 91 58 0 31 121 158 248 9.66e-14 67.4
Msa0513990 AT4G39260.4 40.678 59 35 0 37 95 7 65 1.00e-13 63.5
Msa0513990 AT4G14300.1 41.772 79 45 1 37 115 7 84 1.08e-13 67.4
Msa0513990 AT4G14300.1 36.585 82 52 0 35 116 109 190 1.82e-13 66.6
Msa0513990 AT4G14300.2 41.772 79 45 1 37 115 7 84 1.08e-13 67.4
Msa0513990 AT4G14300.2 36.585 82 52 0 35 116 109 190 1.82e-13 66.6
Msa0513990 AT2G33410.1 33.333 114 68 2 11 116 77 190 1.12e-13 67.4
Msa0513990 AT2G33410.1 38.636 88 51 2 37 122 7 93 1.30e-13 67.0
Msa0513990 AT5G47620.4 46.154 65 35 0 32 96 2 66 1.17e-13 67.4
Msa0513990 AT5G47620.4 35.897 78 50 0 34 111 126 203 4.64e-12 62.8
Msa0513990 AT4G13860.2 55.172 58 25 1 52 108 2 59 1.25e-13 62.4
Msa0513990 AT1G78260.1 38.571 70 43 0 36 105 17 86 1.37e-13 66.6
Msa0513990 AT1G78260.2 38.571 70 43 0 36 105 17 86 1.62e-13 66.2
Msa0513990 AT2G21690.1 40.845 71 41 1 39 108 10 80 2.02e-13 63.2
Msa0513990 AT3G20930.2 35.354 99 58 2 33 125 279 377 2.24e-13 66.2
Msa0513990 AT3G54770.3 39.130 69 42 0 36 104 17 85 2.72e-13 65.5
Msa0513990 AT3G54770.1 39.130 69 42 0 36 104 17 85 3.27e-13 65.1
Msa0513990 AT1G17640.2 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0513990 AT1G17640.1 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0513990 AT1G17640.3 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0513990 AT3G18610.1 40.625 96 53 3 35 129 383 475 4.67e-13 65.9
Msa0513990 AT3G18610.3 40.625 96 53 3 35 129 353 445 9.28e-13 64.7
Msa0513990 AT1G71800.1 33.696 92 51 2 38 119 11 102 1.27e-12 64.3
Msa0513990 AT1G17370.2 36.634 101 56 2 38 130 141 241 1.28e-12 64.3
Msa0513990 AT3G18610.2 40.625 96 53 3 35 129 323 415 1.71e-12 63.9
Msa0513990 AT1G17370.1 42.667 75 42 1 38 111 141 215 1.72e-12 63.9
Msa0513990 AT1G01080.1 37.647 85 53 0 24 108 200 284 2.27e-12 63.2
Msa0513990 AT1G01080.2 37.647 85 53 0 24 108 201 285 2.35e-12 63.2
Msa0513990 AT5G47620.3 35.000 80 52 0 35 114 45 124 2.52e-12 63.5
Msa0513990 AT4G20030.1 33.962 106 61 4 24 124 31 132 3.16e-12 60.8
Msa0513990 AT1G47490.1 38.298 94 56 2 38 129 199 292 4.19e-12 62.8
Msa0513990 AT1G47490.2 38.298 94 56 2 38 129 199 292 4.41e-12 62.4
Msa0513990 AT1G73530.1 32.927 82 54 1 34 114 75 156 5.58e-12 60.8
Msa0513990 AT5G53720.1 36.364 77 49 0 35 111 8 84 5.64e-12 58.9
Msa0513990 AT1G54080.2 40.506 79 42 2 38 111 150 228 5.81e-12 62.4
Msa0513990 AT1G49760.1 42.308 78 44 1 35 111 44 121 6.24e-12 62.4
Msa0513990 AT1G49760.2 42.308 78 44 1 35 111 44 121 6.24e-12 62.4
Msa0513990 AT3G15010.1 32.673 101 68 0 4 104 43 143 6.26e-12 62.4
Msa0513990 AT3G15010.2 32.673 101 68 0 4 104 43 143 6.26e-12 62.4
Msa0513990 AT5G11412.1 34.211 76 50 0 36 111 52 127 8.27e-12 60.1
Msa0513990 AT5G54900.1 40.741 81 46 2 38 116 156 236 9.40e-12 61.6
Msa0513990 AT2G19380.1 28.302 106 76 0 9 114 381 486 9.49e-12 62.0
Msa0513990 AT5G53680.1 34.615 78 49 1 36 111 13 90 1.28e-11 59.7
Msa0513990 AT4G03110.1 37.647 85 52 1 38 121 351 435 1.31e-11 61.2
Msa0513990 AT2G37510.2 35.294 102 40 2 33 108 31 132 1.37e-11 59.3
Msa0513990 AT5G04280.1 39.091 110 58 3 36 136 7 116 1.37e-11 61.2
Msa0513990 AT4G00830.3 34.444 90 56 2 24 112 106 193 1.43e-11 61.2
Msa0513990 AT4G00830.5 34.444 90 56 2 24 112 106 193 1.43e-11 61.2
Msa0513990 AT4G00830.2 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0513990 AT4G00830.1 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0513990 AT4G00830.6 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0513990 AT1G47500.1 36.842 95 58 2 38 130 201 295 1.58e-11 61.2
Msa0513990 AT5G40490.2 29.907 107 68 2 35 140 112 212 2.16e-11 60.8
Msa0513990 AT1G47500.2 36.842 95 58 2 38 130 201 295 2.23e-11 60.5
Msa0513990 AT4G34110.1 41.053 95 46 3 35 124 35 124 2.43e-11 60.8
Msa0513990 AT3G10400.1 39.241 79 47 1 36 113 57 135 2.57e-11 60.1
Msa0513990 AT5G59860.1 41.558 77 39 2 41 116 76 147 4.48e-11 57.8
Msa0513990 AT5G40490.1 29.358 109 70 2 33 140 127 229 6.77e-11 59.3

Find 75 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTCATTAGGATTTAAA+TGG 0.219990 3_4:+64542906 Msa0513990:intron
TTGTTGTCGTTGGCACATTT+TGG 0.267097 3_4:+64543177 Msa0513990:three_prime_UTR
AGCTAAGTCTTCAATCAAAA+TGG 0.296905 3_4:+64542043 Msa0513990:exon
AGCGGCGGTGGTGGTGGATA+TGG 0.301646 3_4:+64542996 Msa0513990:CDS
ACTGGAAGATCAAGGGGATT+TGG 0.334462 3_4:+64542756 Msa0513990:CDS
GGCTACAGCGGCGGTGGTGG+TGG 0.338692 3_4:+64542990 Msa0513990:CDS
TACTAATTAGTGAGATGTTA+TGG 0.340024 3_4:+64543150 Msa0513990:three_prime_UTR
GGTGGATACGGCGGTGGCGG+CGG 0.353130 3_4:+64543029 Msa0513990:CDS
GGTGGATATGGCGGCGGTGG+CGG 0.363753 3_4:+64543008 Msa0513990:CDS
ATGGCTTTCTGTAACAAGAT+TGG 0.370753 3_4:+64542062 Msa0513990:CDS
GGCGGTGGATACGGCGGTGG+CGG 0.385852 3_4:+64543026 Msa0513990:CDS
GGATATGGCGGCGGTGGCGG+TGG 0.386257 3_4:+64543011 Msa0513990:CDS
GGCGGCGGTGGCGGTGGATA+CGG 0.395223 3_4:+64543017 Msa0513990:CDS
CAGGCTGGTGGACCTCGTTC+CGG 0.406159 3_4:+64542963 Msa0513990:CDS
TGTGACCCACAGTAAGATAA+TGG 0.406775 3_4:-64543373 None:intergenic
GGATACGGCGGTGGCGGCGG+CGG 0.421224 3_4:+64543032 Msa0513990:CDS
CTGTGGGTCACATCATTTGA+TGG 0.423989 3_4:+64543384 Msa0513990:three_prime_UTR
TGTTGATGACCAGTCTCTTA+AGG 0.428494 3_4:+64542292 Msa0513990:CDS
GGTGGCTACAGCGGCGGTGG+TGG 0.430233 3_4:+64542987 Msa0513990:CDS
GGTGGTGGATATGGCGGCGG+TGG 0.432808 3_4:+64543005 Msa0513990:CDS
ACGGCGGTGGCGGCGGCGGT+TGG 0.437449 3_4:+64543036 Msa0513990:CDS
AAAATAAGATAATAGAATGT+TGG 0.440908 3_4:+64543239 Msa0513990:three_prime_UTR
TGTGGTGTAATCATAATAAT+CGG 0.443694 3_4:-64543428 None:intergenic
AGAGAAGAGTGAAGCGGCTA+GGG 0.447560 3_4:-64541527 None:intergenic
GGTGGCGGTGGATACGGCGG+TGG 0.448645 3_4:+64543023 Msa0513990:CDS
GGTGGACCTCGTTCCGGAGG+TGG 0.452560 3_4:+64542969 Msa0513990:CDS
TTGTTCATTAGGATTTAAAT+GGG 0.460304 3_4:+64542907 Msa0513990:intron
TAGTTAAGCATGGATGAAAC+AGG 0.461015 3_4:-64542125 None:intergenic
GGAGGTGGCTACAGCGGCGG+TGG 0.487299 3_4:+64542984 Msa0513990:CDS
GAGAGAAGAGTGAAGCGGCT+AGG 0.488694 3_4:-64541528 None:intergenic
AGCACTCTCCATGGATGGAC+AGG 0.490812 3_4:+64542815 Msa0513990:CDS
GGCGGTGGCGGTGGATACGG+CGG 0.512693 3_4:+64543020 Msa0513990:CDS
ATAGAGACACTGGAAGATCA+AGG 0.517492 3_4:+64542748 Msa0513990:CDS
ACCGCCGCTGTAGCCACCTC+CGG 0.525279 3_4:-64542982 None:intergenic
TAAATGCATCCTTAAGAGAC+TGG 0.532048 3_4:-64542301 None:intergenic
TGTTTCCATTATCTTACTGT+GGG 0.532425 3_4:+64543368 Msa0513990:three_prime_UTR
AAGGATGCATTTACAACCTA+CGG 0.532917 3_4:+64542311 Msa0513990:CDS
GGTGGTGGTGGATATGGCGG+CGG 0.535068 3_4:+64543002 Msa0513990:CDS
GGTCATCAACATGGTAAGAA+AGG 0.538171 3_4:-64542280 None:intergenic
TATGAACTTGTTATGGCGAG+TGG 0.538491 3_4:+64543122 Msa0513990:three_prime_UTR
ATCATTTGATGGTGGTGCAT+TGG 0.538715 3_4:+64543395 Msa0513990:three_prime_UTR
TACACCACATCATTTGATGA+TGG 0.538977 3_4:+64543442 Msa0513990:three_prime_UTR
ATGTTTCCATTATCTTACTG+TGG 0.550275 3_4:+64543367 Msa0513990:three_prime_UTR
TATTACAACCTGTCCATCCA+TGG 0.550532 3_4:-64542823 None:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 3_4:+64542944 Msa0513990:CDS
TGAAGTTGCAGACTCTTCAC+TGG 0.556568 3_4:-64542793 None:intergenic
TGCAACTTCAGCACTCTCCA+TGG 0.559718 3_4:+64542806 Msa0513990:CDS
AACCTACGGAGAAGTGGTTG+AGG 0.563954 3_4:+64542325 Msa0513990:CDS
ACTTCAGCACTCTCCATGGA+TGG 0.565520 3_4:+64542810 Msa0513990:CDS
GAGTAGCACCTTGCCTCAAG+AGG 0.579009 3_4:-64542088 None:intergenic
GTTATCACTGATAGAGACAC+TGG 0.581409 3_4:+64542738 Msa0513990:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 3_4:+64542948 Msa0513990:CDS
GGCGGTGGTGGTGGATATGG+CGG 0.588717 3_4:+64542999 Msa0513990:CDS
CAGTAAGATAATGGAAACAT+TGG 0.589687 3_4:-64543364 None:intergenic
TCCGGAGGTGGCTACAGCGG+CGG 0.590630 3_4:+64542981 Msa0513990:CDS
TCTGTTTATGAGAATAGTCG+TGG 0.591571 3_4:+64543296 Msa0513990:three_prime_UTR
TAGAGACACTGGAAGATCAA+GGG 0.594765 3_4:+64542749 Msa0513990:CDS
ACCTACGGAGAAGTGGTTGA+GGG 0.603405 3_4:+64542326 Msa0513990:CDS
AGAGACACTGGAAGATCAAG+GGG 0.604078 3_4:+64542750 Msa0513990:CDS
CTGTAGCCACCTCCGGAACG+AGG 0.604534 3_4:-64542975 None:intergenic
ATTTACAACCTACGGAGAAG+TGG 0.607456 3_4:+64542319 Msa0513990:CDS
GCTGGTGGACCTCGTTCCGG+AGG 0.609683 3_4:+64542966 Msa0513990:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 3_4:-64542135 None:intergenic
CGTTCCGGAGGTGGCTACAG+CGG 0.630122 3_4:+64542978 Msa0513990:CDS
TACGAGAGAGAAGAGTGAAG+CGG 0.631010 3_4:-64541533 None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 3_4:+64542080 Msa0513990:CDS
TAAGAGACTGGTCATCAACA+TGG 0.631495 3_4:-64542289 None:intergenic
TAGACACAAGAACTCAACAC+AGG 0.651558 3_4:-64543092 None:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 3_4:-64542946 None:intergenic
ACAAGATTGGAAACCTCTTG+AGG 0.658250 3_4:+64542075 Msa0513990:CDS
ACCCTCAACCACTTCTCCGT+AGG 0.658961 3_4:-64542327 None:intergenic
GCAAATGATAGACAGGCTGG+TGG 0.673979 3_4:+64542951 Msa0513990:CDS
TGGGTCACATCATTTGATGG+TGG 0.681236 3_4:+64543387 Msa0513990:three_prime_UTR
TGCACCATCATCAAATGATG+TGG 0.684822 3_4:-64543446 None:intergenic
AAAGCTTGCTTGAAGACATG+TGG 0.718559 3_4:-64542154 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTATAATAAATAACTT+TGG + chr3_4:64542696-64542715 Msa0513990:intron 10.0%
!!! GTTTTTATAATAAATAACTT+TGG + chr3_4:64542696-64542715 Msa0513990:intron 10.0%
!!! TTAATTTGTAATCATGATAT+CGG - chr3_4:64541736-64541755 None:intergenic 15.0%
!!! TTTTATTTGTATAAGCTATT+AGG + chr3_4:64541775-64541794 Msa0513990:intron 15.0%
!!! AAAATTTTATGAACTTGTTA+TGG + chr3_4:64543115-64543134 Msa0513990:three_prime_UTR 15.0%
!! AAAATAAGATAATAGAATGT+TGG + chr3_4:64543239-64543258 Msa0513990:three_prime_UTR 15.0%
!!! TTAATTTGTAATCATGATAT+CGG - chr3_4:64541736-64541755 None:intergenic 15.0%
!!! TTTTATTTGTATAAGCTATT+AGG + chr3_4:64541775-64541794 Msa0513990:intron 15.0%
!!! AAAATTTTATGAACTTGTTA+TGG + chr3_4:64543115-64543134 Msa0513990:three_prime_UTR 15.0%
!! AAAATAAGATAATAGAATGT+TGG + chr3_4:64543239-64543258 Msa0513990:three_prime_UTR 15.0%
!! AAATCACAAAAATCAATATC+AGG - chr3_4:64541926-64541945 None:intergenic 20.0%
!!! TTTATCTAGTTTTTTTATGC+TGG + chr3_4:64542199-64542218 Msa0513990:intron 20.0%
!!! TCTAATAAAATGTATGGTTT+TGG + chr3_4:64542241-64542260 Msa0513990:intron 20.0%
!! GAATGTTAGAAGTTAAATTT+GGG + chr3_4:64542446-64542465 Msa0513990:intron 20.0%
!!! ATTTTAATTGTCATTTCAGT+CGG + chr3_4:64542869-64542888 Msa0513990:intron 20.0%
!! TTGTTCATTAGGATTTAAAT+GGG + chr3_4:64542907-64542926 Msa0513990:intron 20.0%
!! AAATCACAAAAATCAATATC+AGG - chr3_4:64541926-64541945 None:intergenic 20.0%
!!! TTTATCTAGTTTTTTTATGC+TGG + chr3_4:64542199-64542218 Msa0513990:intron 20.0%
!!! TCTAATAAAATGTATGGTTT+TGG + chr3_4:64542241-64542260 Msa0513990:intron 20.0%
!! GAATGTTAGAAGTTAAATTT+GGG + chr3_4:64542446-64542465 Msa0513990:intron 20.0%
!!! ATTTTAATTGTCATTTCAGT+CGG + chr3_4:64542869-64542888 Msa0513990:intron 20.0%
!! TTGTTCATTAGGATTTAAAT+GGG + chr3_4:64542907-64542926 Msa0513990:intron 20.0%
!! AGCTTATATCATTTTCTACT+GGG + chr3_4:64541486-64541505 Msa0513990:five_prime_UTR 25.0%
! ACAAAAAAGAGAAACGAAAA+TGG - chr3_4:64541623-64541642 None:intergenic 25.0%
!!! ATGATTCAAATTCGCTTTTT+AGG + chr3_4:64541700-64541719 Msa0513990:intron 25.0%
!!! TGATTCAAATTCGCTTTTTA+GGG + chr3_4:64541701-64541720 Msa0513990:intron 25.0%
! TTGTGTTTATGTCAATAATC+TGG + chr3_4:64541984-64542003 Msa0513990:intron 25.0%
! TGTGTTTATGTCAATAATCT+GGG + chr3_4:64541985-64542004 Msa0513990:intron 25.0%
!!! TTACTTTTGTATTAGGAACT+TGG + chr3_4:64542012-64542031 Msa0513990:intron 25.0%
! GCTGGTTAGTATTATTATTA+TGG + chr3_4:64542217-64542236 Msa0513990:intron 25.0%
!!! TATGGCTCTAATAAAATGTA+TGG + chr3_4:64542235-64542254 Msa0513990:intron 25.0%
!!! AAATGTATGGTTTTGGATTT+TGG + chr3_4:64542248-64542267 Msa0513990:intron 25.0%
! AGTGTTATGTTGATACAAAA+GGG - chr3_4:64542414-64542433 None:intergenic 25.0%
! GGAATGTTAGAAGTTAAATT+TGG + chr3_4:64542445-64542464 Msa0513990:intron 25.0%
!! TTGATACATTAAAGTGTCTT+TGG + chr3_4:64542619-64542638 Msa0513990:intron 25.0%
! CTTGTTCATTAGGATTTAAA+TGG + chr3_4:64542906-64542925 Msa0513990:intron 25.0%
! TACTAATTAGTGAGATGTTA+TGG + chr3_4:64543150-64543169 Msa0513990:three_prime_UTR 25.0%
!!! TGGTTTTTCAGTGTTTTTAT+AGG + chr3_4:64543197-64543216 Msa0513990:three_prime_UTR 25.0%
!! GCAGTATTTAGGTATATTTT+TGG + chr3_4:64543329-64543348 Msa0513990:three_prime_UTR 25.0%
!!! GTATTTAGGTATATTTTTGG+TGG + chr3_4:64543332-64543351 Msa0513990:three_prime_UTR 25.0%
! TGTGGTGTAATCATAATAAT+CGG - chr3_4:64543431-64543450 None:intergenic 25.0%
!! AGCTTATATCATTTTCTACT+GGG + chr3_4:64541486-64541505 Msa0513990:five_prime_UTR 25.0%
! ACAAAAAAGAGAAACGAAAA+TGG - chr3_4:64541623-64541642 None:intergenic 25.0%
!!! ATGATTCAAATTCGCTTTTT+AGG + chr3_4:64541700-64541719 Msa0513990:intron 25.0%
!!! TGATTCAAATTCGCTTTTTA+GGG + chr3_4:64541701-64541720 Msa0513990:intron 25.0%
! TTGTGTTTATGTCAATAATC+TGG + chr3_4:64541984-64542003 Msa0513990:intron 25.0%
! TGTGTTTATGTCAATAATCT+GGG + chr3_4:64541985-64542004 Msa0513990:intron 25.0%
!!! TTACTTTTGTATTAGGAACT+TGG + chr3_4:64542012-64542031 Msa0513990:intron 25.0%
! GCTGGTTAGTATTATTATTA+TGG + chr3_4:64542217-64542236 Msa0513990:intron 25.0%
!!! TATGGCTCTAATAAAATGTA+TGG + chr3_4:64542235-64542254 Msa0513990:intron 25.0%
!!! AAATGTATGGTTTTGGATTT+TGG + chr3_4:64542248-64542267 Msa0513990:intron 25.0%
! AGTGTTATGTTGATACAAAA+GGG - chr3_4:64542414-64542433 None:intergenic 25.0%
! GGAATGTTAGAAGTTAAATT+TGG + chr3_4:64542445-64542464 Msa0513990:intron 25.0%
!! TTGATACATTAAAGTGTCTT+TGG + chr3_4:64542619-64542638 Msa0513990:intron 25.0%
! CTTGTTCATTAGGATTTAAA+TGG + chr3_4:64542906-64542925 Msa0513990:intron 25.0%
! TACTAATTAGTGAGATGTTA+TGG + chr3_4:64543150-64543169 Msa0513990:three_prime_UTR 25.0%
!!! TGGTTTTTCAGTGTTTTTAT+AGG + chr3_4:64543197-64543216 Msa0513990:three_prime_UTR 25.0%
!! GCAGTATTTAGGTATATTTT+TGG + chr3_4:64543329-64543348 Msa0513990:three_prime_UTR 25.0%
!!! GTATTTAGGTATATTTTTGG+TGG + chr3_4:64543332-64543351 Msa0513990:three_prime_UTR 25.0%
! TGTGGTGTAATCATAATAAT+CGG - chr3_4:64543431-64543450 None:intergenic 25.0%
! GAGCTTATATCATTTTCTAC+TGG + chr3_4:64541485-64541504 Msa0513990:five_prime_UTR 30.0%
!!! TTCTCTTTTTTGTTGATTCG+TGG + chr3_4:64541630-64541649 Msa0513990:intron 30.0%
!!! GGGTTTGTTACTTTTGTATT+AGG + chr3_4:64542005-64542024 Msa0513990:intron 30.0%
! TTTTGTATTAGGAACTTGGA+AGG + chr3_4:64542016-64542035 Msa0513990:intron 30.0%
AGCTAAGTCTTCAATCAAAA+TGG + chr3_4:64542043-64542062 Msa0513990:exon 30.0%
!! TTTCATTGGAGGTATTGATT+TGG + chr3_4:64542175-64542194 Msa0513990:intron 30.0%
!! GTTTTGGATTTTGGTATCAT+AGG + chr3_4:64542257-64542276 Msa0513990:intron 30.0%
GTGTTATGTTGATACAAAAG+GGG - chr3_4:64542413-64542432 None:intergenic 30.0%
CAGTGTTATGTTGATACAAA+AGG - chr3_4:64542415-64542434 None:intergenic 30.0%
TGAAGAGTAAGTCAAATTTC+CGG + chr3_4:64542593-64542612 Msa0513990:intron 30.0%
CACTTTAATGTATCAACTAC+CGG - chr3_4:64542615-64542634 None:intergenic 30.0%
!!! TTATGGTTTTTTGTTGTCGT+TGG + chr3_4:64543167-64543186 Msa0513990:three_prime_UTR 30.0%
!! CAGTAAGATAATGGAAACAT+TGG - chr3_4:64543367-64543386 None:intergenic 30.0%
ATGTTTCCATTATCTTACTG+TGG + chr3_4:64543367-64543386 Msa0513990:three_prime_UTR 30.0%
TGTTTCCATTATCTTACTGT+GGG + chr3_4:64543368-64543387 Msa0513990:three_prime_UTR 30.0%
! GAGCTTATATCATTTTCTAC+TGG + chr3_4:64541485-64541504 Msa0513990:five_prime_UTR 30.0%
!!! TTCTCTTTTTTGTTGATTCG+TGG + chr3_4:64541630-64541649 Msa0513990:intron 30.0%
!!! GGGTTTGTTACTTTTGTATT+AGG + chr3_4:64542005-64542024 Msa0513990:intron 30.0%
! TTTTGTATTAGGAACTTGGA+AGG + chr3_4:64542016-64542035 Msa0513990:intron 30.0%
AGCTAAGTCTTCAATCAAAA+TGG + chr3_4:64542043-64542062 Msa0513990:exon 30.0%
!! TTTCATTGGAGGTATTGATT+TGG + chr3_4:64542175-64542194 Msa0513990:intron 30.0%
!! GTTTTGGATTTTGGTATCAT+AGG + chr3_4:64542257-64542276 Msa0513990:intron 30.0%
GTGTTATGTTGATACAAAAG+GGG - chr3_4:64542413-64542432 None:intergenic 30.0%
CAGTGTTATGTTGATACAAA+AGG - chr3_4:64542415-64542434 None:intergenic 30.0%
TGAAGAGTAAGTCAAATTTC+CGG + chr3_4:64542593-64542612 Msa0513990:intron 30.0%
CACTTTAATGTATCAACTAC+CGG - chr3_4:64542615-64542634 None:intergenic 30.0%
!!! TTATGGTTTTTTGTTGTCGT+TGG + chr3_4:64543167-64543186 Msa0513990:three_prime_UTR 30.0%
!! CAGTAAGATAATGGAAACAT+TGG - chr3_4:64543367-64543386 None:intergenic 30.0%
ATGTTTCCATTATCTTACTG+TGG + chr3_4:64543367-64543386 Msa0513990:three_prime_UTR 30.0%
TGTTTCCATTATCTTACTGT+GGG + chr3_4:64543368-64543387 Msa0513990:three_prime_UTR 30.0%
ATCCCTAAAACCCTAATTCT+CGG + chr3_4:64541568-64541587 Msa0513990:intron 35.0%
! AACCGAGAATTAGGGTTTTA+GGG - chr3_4:64541573-64541592 None:intergenic 35.0%
GAGTTATGAACCGAGAATTA+GGG - chr3_4:64541581-64541600 None:intergenic 35.0%
TGAGTTATGAACCGAGAATT+AGG - chr3_4:64541582-64541601 None:intergenic 35.0%
ATGGCTTTCTGTAACAAGAT+TGG + chr3_4:64542062-64542081 Msa0513990:CDS 35.0%
TAGTTAAGCATGGATGAAAC+AGG - chr3_4:64542128-64542147 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + chr3_4:64542161-64542180 Msa0513990:CDS 35.0%
TAAATGCATCCTTAAGAGAC+TGG - chr3_4:64542304-64542323 None:intergenic 35.0%
AAGGATGCATTTACAACCTA+CGG + chr3_4:64542311-64542330 Msa0513990:CDS 35.0%
! ACATAACACTGCATTGACAT+TGG + chr3_4:64542424-64542443 Msa0513990:intron 35.0%
!! GCATCTGCTTTGTTTGATTA+TGG + chr3_4:64542672-64542691 Msa0513990:intron 35.0%
CTGACATACTCTTGTTCATT+AGG + chr3_4:64542896-64542915 Msa0513990:intron 35.0%
TCTGTTTATGAGAATAGTCG+TGG + chr3_4:64543296-64543315 Msa0513990:three_prime_UTR 35.0%
GCACAAAAACTGCAGTATTT+AGG + chr3_4:64543318-64543337 Msa0513990:three_prime_UTR 35.0%
TACACCACATCATTTGATGA+TGG + chr3_4:64543442-64543461 Msa0513990:three_prime_UTR 35.0%
ATCCCTAAAACCCTAATTCT+CGG + chr3_4:64541568-64541587 Msa0513990:intron 35.0%
! AACCGAGAATTAGGGTTTTA+GGG - chr3_4:64541573-64541592 None:intergenic 35.0%
GAGTTATGAACCGAGAATTA+GGG - chr3_4:64541581-64541600 None:intergenic 35.0%
TGAGTTATGAACCGAGAATT+AGG - chr3_4:64541582-64541601 None:intergenic 35.0%
ATGGCTTTCTGTAACAAGAT+TGG + chr3_4:64542062-64542081 Msa0513990:CDS 35.0%
TAGTTAAGCATGGATGAAAC+AGG - chr3_4:64542128-64542147 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + chr3_4:64542161-64542180 Msa0513990:CDS 35.0%
TAAATGCATCCTTAAGAGAC+TGG - chr3_4:64542304-64542323 None:intergenic 35.0%
AAGGATGCATTTACAACCTA+CGG + chr3_4:64542311-64542330 Msa0513990:CDS 35.0%
! ACATAACACTGCATTGACAT+TGG + chr3_4:64542424-64542443 Msa0513990:intron 35.0%
!! GCATCTGCTTTGTTTGATTA+TGG + chr3_4:64542672-64542691 Msa0513990:intron 35.0%
CTGACATACTCTTGTTCATT+AGG + chr3_4:64542896-64542915 Msa0513990:intron 35.0%
TCTGTTTATGAGAATAGTCG+TGG + chr3_4:64543296-64543315 Msa0513990:three_prime_UTR 35.0%
GCACAAAAACTGCAGTATTT+AGG + chr3_4:64543318-64543337 Msa0513990:three_prime_UTR 35.0%
TACACCACATCATTTGATGA+TGG + chr3_4:64543442-64543461 Msa0513990:three_prime_UTR 35.0%
!!! TAGGGTTTTAGGGATGAGAA+AGG - chr3_4:64541563-64541582 None:intergenic 40.0%
! GAACCGAGAATTAGGGTTTT+AGG - chr3_4:64541574-64541593 None:intergenic 40.0%
ACAAGATTGGAAACCTCTTG+AGG + chr3_4:64542075-64542094 Msa0513990:CDS 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - chr3_4:64542157-64542176 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + chr3_4:64542164-64542183 Msa0513990:CDS 40.0%
GGTCATCAACATGGTAAGAA+AGG - chr3_4:64542283-64542302 None:intergenic 40.0%
! TAAGAGACTGGTCATCAACA+TGG - chr3_4:64542292-64542311 None:intergenic 40.0%
!! TGTTGATGACCAGTCTCTTA+AGG + chr3_4:64542292-64542311 Msa0513990:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + chr3_4:64542319-64542338 Msa0513990:CDS 40.0%
TGCTGAAGAACACATTTCAG+TGG + chr3_4:64542483-64542502 Msa0513990:intron 40.0%
GCTGAAGAACACATTTCAGT+GGG + chr3_4:64542484-64542503 Msa0513990:intron 40.0%
CTGAAGAACACATTTCAGTG+GGG + chr3_4:64542485-64542504 Msa0513990:intron 40.0%
GTTATCACTGATAGAGACAC+TGG + chr3_4:64542738-64542757 Msa0513990:CDS 40.0%
ATAGAGACACTGGAAGATCA+AGG + chr3_4:64542748-64542767 Msa0513990:CDS 40.0%
TAGAGACACTGGAAGATCAA+GGG + chr3_4:64542749-64542768 Msa0513990:CDS 40.0%
TATTACAACCTGTCCATCCA+TGG - chr3_4:64542826-64542845 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + chr3_4:64542944-64542963 Msa0513990:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - chr3_4:64542949-64542968 None:intergenic 40.0%
TATGCAAATGATAGACAGGC+TGG + chr3_4:64542948-64542967 Msa0513990:CDS 40.0%
TAGACACAAGAACTCAACAC+AGG - chr3_4:64543095-64543114 None:intergenic 40.0%
!! TATGAACTTGTTATGGCGAG+TGG + chr3_4:64543122-64543141 Msa0513990:three_prime_UTR 40.0%
! TTGTTGTCGTTGGCACATTT+TGG + chr3_4:64543177-64543196 Msa0513990:three_prime_UTR 40.0%
TGTGACCCACAGTAAGATAA+TGG - chr3_4:64543376-64543395 None:intergenic 40.0%
!! ATCATTTGATGGTGGTGCAT+TGG + chr3_4:64543395-64543414 Msa0513990:three_prime_UTR 40.0%
TGCACCATCATCAAATGATG+TGG - chr3_4:64543449-64543468 None:intergenic 40.0%
!!! TAGGGTTTTAGGGATGAGAA+AGG - chr3_4:64541563-64541582 None:intergenic 40.0%
! GAACCGAGAATTAGGGTTTT+AGG - chr3_4:64541574-64541593 None:intergenic 40.0%
ACAAGATTGGAAACCTCTTG+AGG + chr3_4:64542075-64542094 Msa0513990:CDS 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - chr3_4:64542157-64542176 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + chr3_4:64542164-64542183 Msa0513990:CDS 40.0%
GGTCATCAACATGGTAAGAA+AGG - chr3_4:64542283-64542302 None:intergenic 40.0%
! TAAGAGACTGGTCATCAACA+TGG - chr3_4:64542292-64542311 None:intergenic 40.0%
!! TGTTGATGACCAGTCTCTTA+AGG + chr3_4:64542292-64542311 Msa0513990:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + chr3_4:64542319-64542338 Msa0513990:CDS 40.0%
TGCTGAAGAACACATTTCAG+TGG + chr3_4:64542483-64542502 Msa0513990:intron 40.0%
GCTGAAGAACACATTTCAGT+GGG + chr3_4:64542484-64542503 Msa0513990:intron 40.0%
CTGAAGAACACATTTCAGTG+GGG + chr3_4:64542485-64542504 Msa0513990:intron 40.0%
GTTATCACTGATAGAGACAC+TGG + chr3_4:64542738-64542757 Msa0513990:CDS 40.0%
ATAGAGACACTGGAAGATCA+AGG + chr3_4:64542748-64542767 Msa0513990:CDS 40.0%
TAGAGACACTGGAAGATCAA+GGG + chr3_4:64542749-64542768 Msa0513990:CDS 40.0%
TATTACAACCTGTCCATCCA+TGG - chr3_4:64542826-64542845 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + chr3_4:64542944-64542963 Msa0513990:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - chr3_4:64542949-64542968 None:intergenic 40.0%
TATGCAAATGATAGACAGGC+TGG + chr3_4:64542948-64542967 Msa0513990:CDS 40.0%
TAGACACAAGAACTCAACAC+AGG - chr3_4:64543095-64543114 None:intergenic 40.0%
!! TATGAACTTGTTATGGCGAG+TGG + chr3_4:64543122-64543141 Msa0513990:three_prime_UTR 40.0%
! TTGTTGTCGTTGGCACATTT+TGG + chr3_4:64543177-64543196 Msa0513990:three_prime_UTR 40.0%
TGTGACCCACAGTAAGATAA+TGG - chr3_4:64543376-64543395 None:intergenic 40.0%
!! ATCATTTGATGGTGGTGCAT+TGG + chr3_4:64543395-64543414 Msa0513990:three_prime_UTR 40.0%
TGCACCATCATCAAATGATG+TGG - chr3_4:64543449-64543468 None:intergenic 40.0%
TACGAGAGAGAAGAGTGAAG+CGG - chr3_4:64541536-64541555 None:intergenic 45.0%
ATTGGAAACCTCTTGAGGCA+AGG + chr3_4:64542080-64542099 Msa0513990:CDS 45.0%
AGAGACACTGGAAGATCAAG+GGG + chr3_4:64542750-64542769 Msa0513990:CDS 45.0%
ACTGGAAGATCAAGGGGATT+TGG + chr3_4:64542756-64542775 Msa0513990:CDS 45.0%
TGAAGTTGCAGACTCTTCAC+TGG - chr3_4:64542796-64542815 None:intergenic 45.0%
CTGTGGGTCACATCATTTGA+TGG + chr3_4:64543384-64543403 Msa0513990:three_prime_UTR 45.0%
TGGGTCACATCATTTGATGG+TGG + chr3_4:64543387-64543406 Msa0513990:three_prime_UTR 45.0%
TACGAGAGAGAAGAGTGAAG+CGG - chr3_4:64541536-64541555 None:intergenic 45.0%
ATTGGAAACCTCTTGAGGCA+AGG + chr3_4:64542080-64542099 Msa0513990:CDS 45.0%
AGAGACACTGGAAGATCAAG+GGG + chr3_4:64542750-64542769 Msa0513990:CDS 45.0%
ACTGGAAGATCAAGGGGATT+TGG + chr3_4:64542756-64542775 Msa0513990:CDS 45.0%
TGAAGTTGCAGACTCTTCAC+TGG - chr3_4:64542796-64542815 None:intergenic 45.0%
CTGTGGGTCACATCATTTGA+TGG + chr3_4:64543384-64543403 Msa0513990:three_prime_UTR 45.0%
TGGGTCACATCATTTGATGG+TGG + chr3_4:64543387-64543406 Msa0513990:three_prime_UTR 45.0%
AGAGAAGAGTGAAGCGGCTA+GGG - chr3_4:64541530-64541549 None:intergenic 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - chr3_4:64542138-64542157 None:intergenic 50.0%
AACCTACGGAGAAGTGGTTG+AGG + chr3_4:64542325-64542344 Msa0513990:CDS 50.0%
ACCTACGGAGAAGTGGTTGA+GGG + chr3_4:64542326-64542345 Msa0513990:CDS 50.0%
TGCAACTTCAGCACTCTCCA+TGG + chr3_4:64542806-64542825 Msa0513990:CDS 50.0%
ACTTCAGCACTCTCCATGGA+TGG + chr3_4:64542810-64542829 Msa0513990:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG + chr3_4:64542951-64542970 Msa0513990:CDS 50.0%
AGAGAAGAGTGAAGCGGCTA+GGG - chr3_4:64541530-64541549 None:intergenic 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - chr3_4:64542138-64542157 None:intergenic 50.0%
AACCTACGGAGAAGTGGTTG+AGG + chr3_4:64542325-64542344 Msa0513990:CDS 50.0%
ACCTACGGAGAAGTGGTTGA+GGG + chr3_4:64542326-64542345 Msa0513990:CDS 50.0%
TGCAACTTCAGCACTCTCCA+TGG + chr3_4:64542806-64542825 Msa0513990:CDS 50.0%
ACTTCAGCACTCTCCATGGA+TGG + chr3_4:64542810-64542829 Msa0513990:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG + chr3_4:64542951-64542970 Msa0513990:CDS 50.0%
GAGAGAAGAGTGAAGCGGCT+AGG - chr3_4:64541531-64541550 None:intergenic 55.0%
GAGTAGCACCTTGCCTCAAG+AGG - chr3_4:64542091-64542110 None:intergenic 55.0%
ACCCTCAACCACTTCTCCGT+AGG - chr3_4:64542330-64542349 None:intergenic 55.0%
AGCACTCTCCATGGATGGAC+AGG + chr3_4:64542815-64542834 Msa0513990:CDS 55.0%
GAGAGAAGAGTGAAGCGGCT+AGG - chr3_4:64541531-64541550 None:intergenic 55.0%
GAGTAGCACCTTGCCTCAAG+AGG - chr3_4:64542091-64542110 None:intergenic 55.0%
ACCCTCAACCACTTCTCCGT+AGG - chr3_4:64542330-64542349 None:intergenic 55.0%
AGCACTCTCCATGGATGGAC+AGG + chr3_4:64542815-64542834 Msa0513990:CDS 55.0%
! CAGGCTGGTGGACCTCGTTC+CGG + chr3_4:64542963-64542982 Msa0513990:CDS 65.0%
CTGTAGCCACCTCCGGAACG+AGG - chr3_4:64542978-64542997 None:intergenic 65.0%
CGTTCCGGAGGTGGCTACAG+CGG + chr3_4:64542978-64542997 Msa0513990:CDS 65.0%
!! AGCGGCGGTGGTGGTGGATA+TGG + chr3_4:64542996-64543015 Msa0513990:CDS 65.0%
!! GGCGGTGGTGGTGGATATGG+CGG + chr3_4:64542999-64543018 Msa0513990:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+CGG + chr3_4:64543002-64543021 Msa0513990:CDS 65.0%
! CAGGCTGGTGGACCTCGTTC+CGG + chr3_4:64542963-64542982 Msa0513990:CDS 65.0%
CTGTAGCCACCTCCGGAACG+AGG - chr3_4:64542978-64542997 None:intergenic 65.0%
CGTTCCGGAGGTGGCTACAG+CGG + chr3_4:64542978-64542997 Msa0513990:CDS 65.0%
!! AGCGGCGGTGGTGGTGGATA+TGG + chr3_4:64542996-64543015 Msa0513990:CDS 65.0%
!! GGCGGTGGTGGTGGATATGG+CGG + chr3_4:64542999-64543018 Msa0513990:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+CGG + chr3_4:64543002-64543021 Msa0513990:CDS 65.0%
! GCTGGTGGACCTCGTTCCGG+AGG + chr3_4:64542966-64542985 Msa0513990:CDS 70.0%
GGTGGACCTCGTTCCGGAGG+TGG + chr3_4:64542969-64542988 Msa0513990:CDS 70.0%
TCCGGAGGTGGCTACAGCGG+CGG + chr3_4:64542981-64543000 Msa0513990:CDS 70.0%
ACCGCCGCTGTAGCCACCTC+CGG - chr3_4:64542985-64543004 None:intergenic 70.0%
!! GGTGGTGGATATGGCGGCGG+TGG + chr3_4:64543005-64543024 Msa0513990:CDS 70.0%
GGTGGATATGGCGGCGGTGG+CGG + chr3_4:64543008-64543027 Msa0513990:CDS 70.0%
! GCTGGTGGACCTCGTTCCGG+AGG + chr3_4:64542966-64542985 Msa0513990:CDS 70.0%
GGTGGACCTCGTTCCGGAGG+TGG + chr3_4:64542969-64542988 Msa0513990:CDS 70.0%
TCCGGAGGTGGCTACAGCGG+CGG + chr3_4:64542981-64543000 Msa0513990:CDS 70.0%
ACCGCCGCTGTAGCCACCTC+CGG - chr3_4:64542985-64543004 None:intergenic 70.0%
!! GGTGGTGGATATGGCGGCGG+TGG + chr3_4:64543005-64543024 Msa0513990:CDS 70.0%
GGTGGATATGGCGGCGGTGG+CGG + chr3_4:64543008-64543027 Msa0513990:CDS 70.0%
GGAGGTGGCTACAGCGGCGG+TGG + chr3_4:64542984-64543003 Msa0513990:CDS 75.0%
GGTGGCTACAGCGGCGGTGG+TGG + chr3_4:64542987-64543006 Msa0513990:CDS 75.0%
! GGCTACAGCGGCGGTGGTGG+TGG + chr3_4:64542990-64543009 Msa0513990:CDS 75.0%
! GGATATGGCGGCGGTGGCGG+TGG + chr3_4:64543011-64543030 Msa0513990:CDS 75.0%
! GGCGGCGGTGGCGGTGGATA+CGG + chr3_4:64543017-64543036 Msa0513990:CDS 75.0%
! GGCGGTGGCGGTGGATACGG+CGG + chr3_4:64543020-64543039 Msa0513990:CDS 75.0%
! GGTGGCGGTGGATACGGCGG+TGG + chr3_4:64543023-64543042 Msa0513990:CDS 75.0%
GGCGGTGGATACGGCGGTGG+CGG + chr3_4:64543026-64543045 Msa0513990:CDS 75.0%
! GGTGGATACGGCGGTGGCGG+CGG + chr3_4:64543029-64543048 Msa0513990:CDS 75.0%
GGAGGTGGCTACAGCGGCGG+TGG + chr3_4:64542984-64543003 Msa0513990:CDS 75.0%
GGTGGCTACAGCGGCGGTGG+TGG + chr3_4:64542987-64543006 Msa0513990:CDS 75.0%
! GGCTACAGCGGCGGTGGTGG+TGG + chr3_4:64542990-64543009 Msa0513990:CDS 75.0%
! GGATATGGCGGCGGTGGCGG+TGG + chr3_4:64543011-64543030 Msa0513990:CDS 75.0%
! GGCGGCGGTGGCGGTGGATA+CGG + chr3_4:64543017-64543036 Msa0513990:CDS 75.0%
! GGCGGTGGCGGTGGATACGG+CGG + chr3_4:64543020-64543039 Msa0513990:CDS 75.0%
! GGTGGCGGTGGATACGGCGG+TGG + chr3_4:64543023-64543042 Msa0513990:CDS 75.0%
GGCGGTGGATACGGCGGTGG+CGG + chr3_4:64543026-64543045 Msa0513990:CDS 75.0%
! GGTGGATACGGCGGTGGCGG+CGG + chr3_4:64543029-64543048 Msa0513990:CDS 75.0%
!! GGATACGGCGGTGGCGGCGG+CGG + chr3_4:64543032-64543051 Msa0513990:CDS 80.0%
!! GGATACGGCGGTGGCGGCGG+CGG + chr3_4:64543032-64543051 Msa0513990:CDS 80.0%
!! ACGGCGGTGGCGGCGGCGGT+TGG + chr3_4:64543036-64543055 Msa0513990:CDS 85.0%
!! ACGGCGGTGGCGGCGGCGGT+TGG + chr3_4:64543036-64543055 Msa0513990:CDS 85.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64541471 64543500 64541471 ID=Msa0513990;Name=Msa0513990
chr3_4 mRNA 64541471 64543500 64541471 ID=Msa0513990-mRNA-1;Parent=Msa0513990;Name=Msa0513990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=117|1|1|1|0.75|0.6|5|439|146
chr3_4 exon 64541471 64541552 64541471 ID=Msa0513990-mRNA-1:exon:16220;Parent=Msa0513990-mRNA-1
chr3_4 exon 64542027 64542185 64542027 ID=Msa0513990-mRNA-1:exon:16221;Parent=Msa0513990-mRNA-1
chr3_4 exon 64542279 64542347 64542279 ID=Msa0513990-mRNA-1:exon:16222;Parent=Msa0513990-mRNA-1
chr3_4 exon 64542733 64542836 64542733 ID=Msa0513990-mRNA-1:exon:16223;Parent=Msa0513990-mRNA-1
chr3_4 exon 64542918 64543500 64542918 ID=Msa0513990-mRNA-1:exon:16224;Parent=Msa0513990-mRNA-1
chr3_4 five_prime_UTR 64541471 64541552 64541471 ID=Msa0513990-mRNA-1:five_prime_utr;Parent=Msa0513990-mRNA-1
chr3_4 five_prime_UTR 64542027 64542061 64542027 ID=Msa0513990-mRNA-1:five_prime_utr;Parent=Msa0513990-mRNA-1
chr3_4 CDS 64542062 64542185 64542062 ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4 CDS 64542279 64542347 64542279 ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4 CDS 64542733 64542836 64542733 ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4 CDS 64542918 64543061 64542918 ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4 three_prime_UTR 64543062 64543500 64543062 ID=Msa0513990-mRNA-1:three_prime_utr;Parent=Msa0513990-mRNA-1
Gene Sequence

>Msa0513990

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACTCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGACCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCTGCAACTTCAGCACTCTCCATGGATGGACAGGATTTAAATGGGCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTTCCGGAGGTGGCTACAGCGGCGGTGGTGGTGGATATGGCGGCGGTGGCGGTGGATACGGCGGTGGCGGCGGCGGTTGGTGA
Protein sequence

>Msa0513990

MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRSGGGYSGGGGGYGGGGGGYGGGGGGW*