AlfalfaGEDB | Msa0513990

M. sativa cultivar zhongmu-4 / Msa0513990

KEGG: -
GO: GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513990	XP_003601657.1	96.552	116	4	0	1	116	1	116	1.20e-75	232

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513990	sp\|Q9LIS2\|RBG4_ARATH	62.295	122	43	3	1	121	1	120	5.75e-47	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513990	G7JA80	96.552	116	4	0	1	116	1	116	5.75e-76	232

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015930	Msa0513990	0.832317	1.012991e-55	-8.615850e-47
Msa0023010	Msa0513990	0.804248	2.366079e-49	-8.615850e-47
Msa0055180	Msa0513990	0.831402	1.703916e-55	-8.615850e-47
Msa0118790	Msa0513990	0.815942	7.137487e-52	-8.615850e-47
Msa0140630	Msa0513990	0.810812	9.568886e-51	-8.615850e-47
Msa0156370	Msa0513990	0.833400	5.451793e-56	-8.615850e-47
Msa0159170	Msa0513990	0.807303	5.399160e-50	-8.615850e-47
Msa0162120	Msa0513990	0.813410	2.596606e-51	-8.615850e-47
Msa0164770	Msa0513990	0.814439	1.539813e-51	-8.615850e-47
Msa0233630	Msa0513990	-0.808428	3.112575e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513990	MtrunA17_Chr3g0121631	96.552	116	4	0	1	116	1	116	1.11e-79	232
Msa0513990	MtrunA17_Chr4g0061451	54.545	121	48	3	1	114	1	121	4.30e-38	130
Msa0513990	MtrunA17_Chr7g0219021	48.780	123	58	2	1	118	1	123	6.42e-35	121
Msa0513990	MtrunA17_Chr3g0086861	45.802	131	58	4	1	122	1	127	6.78e-32	117
Msa0513990	MtrunA17_Chr3g0119311	47.368	95	49	1	36	129	36	130	1.03e-26	97.4
Msa0513990	MtrunA17_Chr7g0219031	46.789	109	49	3	1	102	1	107	1.40e-26	96.7
Msa0513990	MtrunA17_Chr7g0266751	45.714	105	53	2	23	123	19	123	1.58e-24	92.0
Msa0513990	MtrunA17_Chr4g0035001	52.632	76	35	1	37	111	7	82	9.98e-24	90.5
Msa0513990	MtrunA17_Chr4g0031091	43.000	100	56	1	15	113	12	111	1.54e-23	88.6
Msa0513990	MtrunA17_Chr4g0035051	49.351	77	38	1	37	112	9	85	6.72e-23	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0513990	AT3G23830.2	62.295	122	43	3	1	121	1	120	5.84e-48	151
Msa0513990	AT3G23830.1	62.295	122	43	3	1	121	1	120	5.84e-48	151
Msa0513990	AT4G13850.3	62.295	122	43	3	1	121	1	120	3.07e-46	147
Msa0513990	AT4G13850.2	62.295	122	43	3	1	121	1	120	4.05e-46	147
Msa0513990	AT4G13850.1	62.295	122	43	3	1	121	1	120	4.71e-46	147
Msa0513990	AT4G13850.4	63.248	117	41	2	1	116	1	116	8.66e-46	145
Msa0513990	AT5G61030.2	57.983	119	45	2	1	114	1	119	8.11e-42	141
Msa0513990	AT5G61030.1	57.983	119	45	2	1	114	1	119	8.11e-42	141
Msa0513990	AT1G74230.1	55.752	113	48	1	1	113	1	111	1.42e-38	132
Msa0513990	AT5G47320.1	58.772	114	41	3	1	113	1	109	2.71e-35	122

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Find 75 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGATAATAGAATGT+TGG	0.440908	3_4:+64543239	Msa0513990:three_prime_UTR
AAAGCTTGCTTGAAGACATG+TGG	0.718559	3_4:-64542154	None:intergenic
AACCTACGGAGAAGTGGTTG+AGG	0.563954	3_4:+64542325	Msa0513990:CDS
AAGGATGCATTTACAACCTA+CGG	0.532917	3_4:+64542311	Msa0513990:CDS
ACAAGATTGGAAACCTCTTG+AGG	0.658250	3_4:+64542075	Msa0513990:CDS
ACCCTCAACCACTTCTCCGT+AGG	0.658961	3_4:-64542327	None:intergenic
ACCGCCGCTGTAGCCACCTC+CGG	0.525279	3_4:-64542982	None:intergenic
ACCTACGGAGAAGTGGTTGA+GGG	0.603405	3_4:+64542326	Msa0513990:CDS
ACGGCGGTGGCGGCGGCGGT+TGG	0.437449	3_4:+64543036	Msa0513990:CDS
ACTGGAAGATCAAGGGGATT+TGG	0.334462	3_4:+64542756	Msa0513990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTAAGTCTTCAATCAAAA+TGG	+	chr3_4:64542043-64542062	Msa0513990:exon	30.0%
GTGTTATGTTGATACAAAAG+GGG	-	chr3_4:64542413-64542432	None:intergenic	30.0%
CAGTGTTATGTTGATACAAA+AGG	-	chr3_4:64542415-64542434	None:intergenic	30.0%
TGAAGAGTAAGTCAAATTTC+CGG	+	chr3_4:64542593-64542612	Msa0513990:intron	30.0%
CACTTTAATGTATCAACTAC+CGG	-	chr3_4:64542615-64542634	None:intergenic	30.0%
ATGTTTCCATTATCTTACTG+TGG	+	chr3_4:64543367-64543386	Msa0513990:three_prime_UTR	30.0%
TGTTTCCATTATCTTACTGT+GGG	+	chr3_4:64543368-64543387	Msa0513990:three_prime_UTR	30.0%
AGCTAAGTCTTCAATCAAAA+TGG	+	chr3_4:64542043-64542062	Msa0513990:exon	30.0%
GTGTTATGTTGATACAAAAG+GGG	-	chr3_4:64542413-64542432	None:intergenic	30.0%
CAGTGTTATGTTGATACAAA+AGG	-	chr3_4:64542415-64542434	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	64541471	64543500	64541471	ID=Msa0513990;Name=Msa0513990
chr3_4	mRNA	64541471	64543500	64541471	ID=Msa0513990-mRNA-1;Parent=Msa0513990;Name=Msa0513990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=117\|1\|1\|1\|0.75\|0.6\|5\|439\|146
chr3_4	exon	64541471	64541552	64541471	ID=Msa0513990-mRNA-1:exon:16220;Parent=Msa0513990-mRNA-1
chr3_4	exon	64542027	64542185	64542027	ID=Msa0513990-mRNA-1:exon:16221;Parent=Msa0513990-mRNA-1
chr3_4	exon	64542279	64542347	64542279	ID=Msa0513990-mRNA-1:exon:16222;Parent=Msa0513990-mRNA-1
chr3_4	exon	64542733	64542836	64542733	ID=Msa0513990-mRNA-1:exon:16223;Parent=Msa0513990-mRNA-1
chr3_4	exon	64542918	64543500	64542918	ID=Msa0513990-mRNA-1:exon:16224;Parent=Msa0513990-mRNA-1
chr3_4	five_prime_UTR	64541471	64541552	64541471	ID=Msa0513990-mRNA-1:five_prime_utr;Parent=Msa0513990-mRNA-1
chr3_4	five_prime_UTR	64542027	64542061	64542027	ID=Msa0513990-mRNA-1:five_prime_utr;Parent=Msa0513990-mRNA-1
chr3_4	CDS	64542062	64542185	64542062	ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4	CDS	64542279	64542347	64542279	ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4	CDS	64542733	64542836	64542733	ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4	CDS	64542918	64543061	64542918	ID=Msa0513990-mRNA-1:cds;Parent=Msa0513990-mRNA-1
chr3_4	three_prime_UTR	64543062	64543500	64543062	ID=Msa0513990-mRNA-1:three_prime_utr;Parent=Msa0513990-mRNA-1

Gene Sequence

>Msa0513990

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACTCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGACCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCTGCAACTTCAGCACTCTCCATGGATGGACAGGATTTAAATGGGCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTTCCGGAGGTGGCTACAGCGGCGGTGGTGGTGGATATGGCGGCGGTGGCGGTGGATACGGCGGTGGCGGCGGCGGTTGGTGA

Protein sequence

>Msa0513990

MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRSGGGYSGGGGGYGGGGGGYGGGGGGW*