AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375310 MtrunA17_Chr3g0121631 96.552 116 4 0 1 116 1 116 1.11e-79 232
Msa0375310 MtrunA17_Chr4g0061451 54.545 121 48 3 1 114 1 121 4.30e-38 130
Msa0375310 MtrunA17_Chr7g0219021 48.780 123 58 2 1 118 1 123 6.42e-35 121
Msa0375310 MtrunA17_Chr3g0086861 45.802 131 58 4 1 122 1 127 6.78e-32 117
Msa0375310 MtrunA17_Chr3g0119311 47.368 95 49 1 36 129 36 130 1.03e-26 97.4
Msa0375310 MtrunA17_Chr7g0219031 46.789 109 49 3 1 102 1 107 1.40e-26 96.7
Msa0375310 MtrunA17_Chr7g0266751 45.714 105 53 2 23 123 19 123 1.58e-24 92.0
Msa0375310 MtrunA17_Chr4g0035001 52.632 76 35 1 37 111 7 82 9.98e-24 90.5
Msa0375310 MtrunA17_Chr4g0031091 43.000 100 56 1 15 113 12 111 1.54e-23 88.6
Msa0375310 MtrunA17_Chr4g0035051 49.351 77 38 1 37 112 9 85 6.72e-23 87.0
Msa0375310 MtrunA17_Chr4g0035031 51.316 76 36 1 37 111 9 84 4.31e-22 87.0
Msa0375310 MtrunA17_Chr3g0116631 45.455 88 43 2 37 123 207 290 4.80e-20 83.6
Msa0375310 MtrunA17_Chr2g0278661 50.649 77 37 1 37 112 8 84 8.88e-20 82.0
Msa0375310 MtrunA17_Chr7g0263001 40.496 121 62 4 1 116 1 116 3.88e-19 78.2
Msa0375310 MtrunA17_Chr3g0101061 40.179 112 59 4 11 115 8 118 1.41e-18 80.9
Msa0375310 MtrunA17_Chr1g0181111 50.633 79 38 1 37 114 197 275 1.42e-18 79.7
Msa0375310 MtrunA17_Chr4g0038111 40.385 104 61 1 30 133 333 435 8.28e-18 79.0
Msa0375310 MtrunA17_Chr4g0042161 43.956 91 48 2 31 118 44 134 1.14e-17 74.3
Msa0375310 MtrunA17_Chr1g0198431 37.895 95 55 2 33 126 189 280 1.76e-17 76.6
Msa0375310 MtrunA17_Chr4g0058151 45.570 79 42 1 37 114 217 295 4.95e-17 75.5
Msa0375310 MtrunA17_Chr4g0058151 39.000 100 60 1 37 135 123 222 2.47e-12 62.8
Msa0375310 MtrunA17_Chr4g0050781 41.250 80 46 1 37 115 8 87 1.14e-16 73.2
Msa0375310 MtrunA17_Chr6g0449481 35.455 110 69 2 31 138 128 237 7.44e-16 73.2
Msa0375310 MtrunA17_Chr3g0110211 43.820 89 48 2 36 122 112 200 1.68e-15 72.0
Msa0375310 MtrunA17_Chr1g0168601 46.753 77 40 1 37 112 154 230 2.68e-15 70.1
Msa0375310 MtrunA17_Chr1g0210241 37.647 85 52 1 34 117 5 89 3.00e-15 70.5
Msa0375310 MtrunA17_Chr1g0186351 36.471 85 54 0 32 116 108 192 3.52e-15 71.2
Msa0375310 MtrunA17_Chr1g0186351 37.975 79 48 1 37 115 7 84 1.01e-12 64.3
Msa0375310 MtrunA17_Chr3g0144311 35.714 84 54 0 36 119 29 112 6.22e-15 69.7
Msa0375310 MtrunA17_Chr4g0017401 35.484 93 56 1 36 124 16 108 6.79e-15 69.3
Msa0375310 MtrunA17_Chr7g0268551 40.964 83 48 1 38 119 350 432 7.03e-15 70.5
Msa0375310 MtrunA17_Chr5g0447761 41.250 80 46 1 35 114 5 83 8.89e-15 70.1
Msa0375310 MtrunA17_Chr5g0447761 34.177 79 52 0 37 115 107 185 9.65e-12 61.2
Msa0375310 MtrunA17_Chr1g0201001 36.842 95 54 2 38 126 31 125 1.35e-14 69.7
Msa0375310 MtrunA17_Chr3g0088511 36.170 94 56 3 18 108 13 105 2.32e-14 65.5
Msa0375310 MtrunA17_Chr3g0135111 36.471 85 54 0 31 115 112 196 2.69e-14 68.6
Msa0375310 MtrunA17_Chr3g0135111 38.636 88 53 1 27 114 1 87 5.17e-12 62.0
Msa0375310 MtrunA17_Chr7g0276531 40.580 69 41 0 36 104 18 86 3.07e-14 67.4
Msa0375310 MtrunA17_Chr8g0346011 42.029 69 40 0 36 104 37 105 3.25e-14 67.8
Msa0375310 MtrunA17_Chr2g0327921 38.750 80 48 1 36 114 7 86 3.27e-14 63.9
Msa0375310 MtrunA17_Chr2g0290191 40.244 82 48 1 33 114 1 81 4.83e-14 68.2
Msa0375310 MtrunA17_Chr2g0290191 34.177 79 52 0 33 111 103 181 5.16e-12 62.4
Msa0375310 MtrunA17_Chr6g0481071 35.000 80 51 1 36 114 95 174 5.08e-14 65.9
Msa0375310 MtrunA17_Chr8g0344491 45.333 75 40 1 38 111 149 223 8.12e-14 67.4
Msa0375310 MtrunA17_Chr4g0070231 44.000 75 41 1 38 111 133 207 2.02e-13 66.2
Msa0375310 MtrunA17_Chr4g0065741 38.272 81 49 1 34 113 69 149 4.66e-13 62.8
Msa0375310 MtrunA17_Chr3g0127751 42.029 69 40 0 36 104 26 94 4.70e-13 64.3
Msa0375310 MtrunA17_Chr5g0426311 37.681 69 43 0 36 104 16 84 5.19e-13 64.3
Msa0375310 MtrunA17_Chr1g0153181 36.000 100 58 2 19 112 10 109 5.29e-13 65.1
Msa0375310 MtrunA17_Chr1g0163591 39.796 98 57 2 35 131 161 257 6.96e-13 64.7
Msa0375310 MtrunA17_Chr7g0267571 39.080 87 52 1 34 119 210 296 1.05e-12 63.9
Msa0375310 MtrunA17_Chr7g0267571 32.743 113 72 3 37 146 110 221 7.27e-11 58.5
Msa0375310 MtrunA17_Chr4g0042151 33.913 115 66 4 3 114 16 123 1.60e-12 62.0
Msa0375310 MtrunA17_Chr3g0139111 42.667 75 42 1 38 111 147 221 2.04e-12 63.2
Msa0375310 MtrunA17_Chr8g0360551 43.056 72 41 0 33 104 70 141 2.53e-12 63.2
Msa0375310 MtrunA17_Chr5g0419351 36.250 80 50 1 33 111 7 86 3.34e-12 60.8
Msa0375310 MtrunA17_Chr8g0375101 37.349 83 51 1 33 115 1 82 7.12e-12 61.6
Msa0375310 MtrunA17_Chr5g0430471 27.500 120 72 3 9 124 23 131 7.40e-12 59.3
Msa0375310 MtrunA17_Chr3g0120721 29.801 151 82 4 6 145 88 225 1.05e-11 61.2
Msa0375310 MtrunA17_Chr2g0328791 40.964 83 47 2 38 118 110 192 1.24e-11 61.2
Msa0375310 MtrunA17_Chr4g0044541 37.975 79 48 1 35 112 33 111 1.80e-11 60.8
Msa0375310 MtrunA17_Chr4g0018581 39.024 82 49 1 31 111 446 527 3.13e-11 60.1
Msa0375310 MtrunA17_Chr4g0074711 35.238 105 64 3 31 131 160 264 3.24e-11 59.7
Msa0375310 MtrunA17_Chr5g0402191 37.349 83 51 1 33 115 1 82 7.07e-11 58.9
Msa0375310 MtrunA17_Chr1g0153871 35.870 92 57 2 38 127 192 283 9.53e-11 58.5
Msa0375310 MtrunA17_Chr1g0177101 37.037 81 50 1 34 113 205 285 9.72e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375310 AT3G23830.2 62.295 122 43 3 1 121 1 120 5.84e-48 151
Msa0375310 AT3G23830.1 62.295 122 43 3 1 121 1 120 5.84e-48 151
Msa0375310 AT4G13850.3 62.295 122 43 3 1 121 1 120 3.07e-46 147
Msa0375310 AT4G13850.2 62.295 122 43 3 1 121 1 120 4.05e-46 147
Msa0375310 AT4G13850.1 62.295 122 43 3 1 121 1 120 4.71e-46 147
Msa0375310 AT4G13850.4 63.248 117 41 2 1 116 1 116 8.66e-46 145
Msa0375310 AT5G61030.2 57.983 119 45 2 1 114 1 119 8.11e-42 141
Msa0375310 AT5G61030.1 57.983 119 45 2 1 114 1 119 8.11e-42 141
Msa0375310 AT1G74230.1 55.752 113 48 1 1 113 1 111 1.42e-38 132
Msa0375310 AT5G47320.1 58.772 114 41 3 1 113 1 109 2.71e-35 122
Msa0375310 AT3G08000.1 47.899 119 54 2 9 119 7 125 1.50e-28 102
Msa0375310 AT5G06210.1 49.495 99 40 2 35 132 33 122 1.58e-23 89.7
Msa0375310 AT2G21660.2 49.351 77 38 1 37 112 9 85 1.27e-21 85.5
Msa0375310 AT2G21660.1 49.351 77 38 1 37 112 9 85 1.90e-21 85.5
Msa0375310 AT5G59865.1 50.000 84 41 1 34 116 24 107 5.24e-21 82.4
Msa0375310 AT2G37220.1 51.765 85 37 2 37 120 205 286 9.59e-21 85.9
Msa0375310 AT2G37220.1 39.785 93 51 2 37 128 92 180 7.93e-12 61.6
Msa0375310 AT3G53460.1 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0375310 AT3G53460.3 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0375310 AT3G53460.2 51.807 83 39 1 37 118 258 340 1.47e-20 86.3
Msa0375310 AT3G53460.4 51.807 83 39 1 37 118 279 361 1.75e-20 86.3
Msa0375310 AT4G39260.3 42.169 83 47 1 37 118 7 89 1.11e-19 78.6
Msa0375310 AT3G26420.1 44.330 97 53 1 37 132 8 104 3.17e-19 81.3
Msa0375310 AT1G18630.1 41.228 114 61 3 1 112 4 113 6.10e-19 78.2
Msa0375310 AT4G24770.1 47.126 87 42 2 37 122 245 328 7.81e-19 81.3
Msa0375310 AT4G24770.1 36.283 113 71 1 23 134 137 249 1.43e-12 63.9
Msa0375310 AT4G24770.2 47.126 87 42 2 37 122 245 328 7.81e-19 81.3
Msa0375310 AT4G24770.2 36.283 113 71 1 23 134 137 249 1.43e-12 63.9
Msa0375310 AT5G50250.1 45.570 79 42 1 37 114 208 286 5.07e-18 78.6
Msa0375310 AT5G50250.1 37.624 101 62 1 36 135 113 213 2.84e-12 62.8
Msa0375310 AT3G46020.1 45.000 80 43 1 35 113 6 85 1.58e-17 73.2
Msa0375310 AT4G39260.2 42.105 76 43 1 37 111 7 82 1.72e-17 73.9
Msa0375310 AT2G37510.1 46.753 77 40 1 33 108 31 107 4.09e-17 73.2
Msa0375310 AT4G39260.1 42.105 76 43 1 37 111 7 82 4.61e-17 73.9
Msa0375310 AT4G13860.1 48.000 75 38 1 35 108 2 76 9.65e-17 70.9
Msa0375310 AT1G60000.1 51.899 79 37 1 34 111 175 253 4.85e-16 72.8
Msa0375310 AT5G55550.5 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0375310 AT5G55550.5 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0375310 AT5G55550.4 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0375310 AT5G55550.4 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0375310 AT5G55550.9 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0375310 AT5G55550.9 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0375310 AT5G55550.7 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0375310 AT5G55550.7 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0375310 AT5G55550.1 43.038 79 44 1 37 115 7 84 7.84e-16 73.6
Msa0375310 AT5G55550.1 29.703 101 71 0 35 135 109 209 1.50e-11 61.2
Msa0375310 AT5G55550.2 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0375310 AT5G55550.2 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0375310 AT5G55550.3 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0375310 AT5G55550.3 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0375310 AT5G55550.6 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0375310 AT5G55550.6 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0375310 AT5G55550.11 43.038 79 44 1 37 115 7 84 9.01e-16 73.2
Msa0375310 AT5G55550.11 29.703 101 71 0 35 135 109 209 1.35e-11 61.2
Msa0375310 AT3G20930.1 37.234 94 58 1 33 125 279 372 1.38e-15 72.8
Msa0375310 AT1G60650.2 39.216 102 57 2 35 131 11 112 2.13e-15 71.6
Msa0375310 AT1G60650.1 39.216 102 57 2 35 131 11 112 2.13e-15 71.6
Msa0375310 AT1G76460.1 37.363 91 54 1 36 126 24 111 2.43e-15 71.2
Msa0375310 AT5G55550.8 45.714 70 37 1 37 106 7 75 2.91e-15 72.0
Msa0375310 AT5G55550.8 29.703 101 71 0 35 135 156 256 9.21e-12 62.0
Msa0375310 AT5G55550.10 45.714 70 37 1 37 106 7 75 2.95e-15 72.0
Msa0375310 AT5G55550.10 29.703 101 71 0 35 135 156 256 8.33e-12 62.0
Msa0375310 AT5G54580.1 36.752 117 62 3 3 115 28 136 3.08e-15 68.9
Msa0375310 AT2G46780.1 37.234 94 54 1 36 124 22 115 3.93e-15 71.2
Msa0375310 AT2G46780.2 37.234 94 54 1 36 124 22 115 3.93e-15 71.2
Msa0375310 AT1G48920.1 41.748 103 54 1 35 131 296 398 5.08e-15 71.2
Msa0375310 AT3G07810.1 41.026 78 45 1 37 114 7 83 6.67e-15 70.9
Msa0375310 AT3G07810.1 35.714 98 59 2 35 128 107 204 1.46e-11 61.2
Msa0375310 AT3G07810.2 41.026 78 45 1 37 114 7 83 7.07e-15 70.9
Msa0375310 AT3G07810.2 35.714 98 59 2 35 128 107 204 1.55e-11 61.2
Msa0375310 AT2G18510.1 42.697 89 49 2 36 122 112 200 1.04e-14 70.1
Msa0375310 AT1G22330.1 36.111 108 63 2 36 143 17 118 1.12e-14 69.3
Msa0375310 AT4G26650.2 42.308 78 44 1 37 114 13 89 1.34e-14 70.1
Msa0375310 AT4G26650.2 34.568 81 53 0 35 115 118 198 2.40e-12 63.5
Msa0375310 AT3G52380.1 44.578 83 45 1 34 115 217 299 1.35e-14 69.7
Msa0375310 AT4G26650.1 42.308 78 44 1 37 114 16 92 1.37e-14 70.1
Msa0375310 AT4G26650.1 34.568 81 53 0 35 115 121 201 2.55e-12 63.5
Msa0375310 AT1G22910.2 36.559 93 55 1 36 124 13 105 1.48e-14 68.6
Msa0375310 AT1G33470.3 42.029 69 40 0 36 104 7 75 1.55e-14 68.6
Msa0375310 AT1G33470.2 42.029 69 40 0 36 104 7 75 1.56e-14 68.6
Msa0375310 AT1G33470.1 42.029 69 40 0 36 104 7 75 1.61e-14 68.6
Msa0375310 AT3G13224.3 38.889 90 54 1 28 116 92 181 1.74e-14 69.3
Msa0375310 AT1G22910.1 36.559 93 55 1 36 124 13 105 1.82e-14 68.6
Msa0375310 AT3G13224.2 38.889 90 54 1 28 116 101 190 1.95e-14 69.3
Msa0375310 AT1G20880.2 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0375310 AT1G20880.3 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0375310 AT1G20880.1 42.029 69 40 0 36 104 24 92 2.43e-14 68.6
Msa0375310 AT1G22910.3 36.559 93 55 1 36 124 13 105 4.12e-14 68.2
Msa0375310 AT5G47620.1 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0375310 AT5G47620.1 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0375310 AT5G47620.2 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0375310 AT5G47620.2 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0375310 AT5G47620.5 39.759 83 49 1 32 114 2 83 4.19e-14 68.6
Msa0375310 AT5G47620.5 35.897 78 50 0 34 111 104 181 3.99e-12 62.8
Msa0375310 AT3G13224.1 48.529 68 35 0 28 95 101 168 4.57e-14 67.0
Msa0375310 AT1G54080.1 42.667 75 42 1 38 111 150 224 5.06e-14 68.2
Msa0375310 AT2G27330.1 32.632 95 63 1 35 128 20 114 5.67e-14 64.3
Msa0375310 AT3G14100.1 42.667 75 42 1 38 111 146 220 6.90e-14 67.8
Msa0375310 AT2G22100.1 36.264 91 58 0 31 121 158 248 9.66e-14 67.4
Msa0375310 AT4G39260.4 40.678 59 35 0 37 95 7 65 1.00e-13 63.5
Msa0375310 AT4G14300.1 41.772 79 45 1 37 115 7 84 1.08e-13 67.4
Msa0375310 AT4G14300.1 36.585 82 52 0 35 116 109 190 1.82e-13 66.6
Msa0375310 AT4G14300.2 41.772 79 45 1 37 115 7 84 1.08e-13 67.4
Msa0375310 AT4G14300.2 36.585 82 52 0 35 116 109 190 1.82e-13 66.6
Msa0375310 AT2G33410.1 33.333 114 68 2 11 116 77 190 1.12e-13 67.4
Msa0375310 AT2G33410.1 38.636 88 51 2 37 122 7 93 1.30e-13 67.0
Msa0375310 AT5G47620.4 46.154 65 35 0 32 96 2 66 1.17e-13 67.4
Msa0375310 AT5G47620.4 35.897 78 50 0 34 111 126 203 4.64e-12 62.8
Msa0375310 AT4G13860.2 55.172 58 25 1 52 108 2 59 1.25e-13 62.4
Msa0375310 AT1G78260.1 38.571 70 43 0 36 105 17 86 1.37e-13 66.6
Msa0375310 AT1G78260.2 38.571 70 43 0 36 105 17 86 1.62e-13 66.2
Msa0375310 AT2G21690.1 40.845 71 41 1 39 108 10 80 2.02e-13 63.2
Msa0375310 AT3G20930.2 35.354 99 58 2 33 125 279 377 2.24e-13 66.2
Msa0375310 AT3G54770.3 39.130 69 42 0 36 104 17 85 2.72e-13 65.5
Msa0375310 AT3G54770.1 39.130 69 42 0 36 104 17 85 3.27e-13 65.1
Msa0375310 AT1G17640.2 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0375310 AT1G17640.1 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0375310 AT1G17640.3 35.644 101 61 3 34 132 155 253 4.47e-13 65.5
Msa0375310 AT3G18610.1 40.625 96 53 3 35 129 383 475 4.67e-13 65.9
Msa0375310 AT3G18610.3 40.625 96 53 3 35 129 353 445 9.28e-13 64.7
Msa0375310 AT1G71800.1 33.696 92 51 2 38 119 11 102 1.27e-12 64.3
Msa0375310 AT1G17370.2 36.634 101 56 2 38 130 141 241 1.28e-12 64.3
Msa0375310 AT3G18610.2 40.625 96 53 3 35 129 323 415 1.71e-12 63.9
Msa0375310 AT1G17370.1 42.667 75 42 1 38 111 141 215 1.72e-12 63.9
Msa0375310 AT1G01080.1 37.647 85 53 0 24 108 200 284 2.27e-12 63.2
Msa0375310 AT1G01080.2 37.647 85 53 0 24 108 201 285 2.35e-12 63.2
Msa0375310 AT5G47620.3 35.000 80 52 0 35 114 45 124 2.52e-12 63.5
Msa0375310 AT4G20030.1 33.962 106 61 4 24 124 31 132 3.16e-12 60.8
Msa0375310 AT1G47490.1 38.298 94 56 2 38 129 199 292 4.19e-12 62.8
Msa0375310 AT1G47490.2 38.298 94 56 2 38 129 199 292 4.41e-12 62.4
Msa0375310 AT1G73530.1 32.927 82 54 1 34 114 75 156 5.58e-12 60.8
Msa0375310 AT5G53720.1 36.364 77 49 0 35 111 8 84 5.64e-12 58.9
Msa0375310 AT1G54080.2 40.506 79 42 2 38 111 150 228 5.81e-12 62.4
Msa0375310 AT1G49760.1 42.308 78 44 1 35 111 44 121 6.24e-12 62.4
Msa0375310 AT1G49760.2 42.308 78 44 1 35 111 44 121 6.24e-12 62.4
Msa0375310 AT3G15010.1 32.673 101 68 0 4 104 43 143 6.26e-12 62.4
Msa0375310 AT3G15010.2 32.673 101 68 0 4 104 43 143 6.26e-12 62.4
Msa0375310 AT5G11412.1 34.211 76 50 0 36 111 52 127 8.27e-12 60.1
Msa0375310 AT5G54900.1 40.741 81 46 2 38 116 156 236 9.40e-12 61.6
Msa0375310 AT2G19380.1 28.302 106 76 0 9 114 381 486 9.49e-12 62.0
Msa0375310 AT5G53680.1 34.615 78 49 1 36 111 13 90 1.28e-11 59.7
Msa0375310 AT4G03110.1 37.647 85 52 1 38 121 351 435 1.31e-11 61.2
Msa0375310 AT2G37510.2 35.294 102 40 2 33 108 31 132 1.37e-11 59.3
Msa0375310 AT5G04280.1 39.091 110 58 3 36 136 7 116 1.37e-11 61.2
Msa0375310 AT4G00830.3 34.444 90 56 2 24 112 106 193 1.43e-11 61.2
Msa0375310 AT4G00830.5 34.444 90 56 2 24 112 106 193 1.43e-11 61.2
Msa0375310 AT4G00830.2 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0375310 AT4G00830.1 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0375310 AT4G00830.6 33.696 92 58 2 24 114 106 195 1.57e-11 61.2
Msa0375310 AT1G47500.1 36.842 95 58 2 38 130 201 295 1.58e-11 61.2
Msa0375310 AT5G40490.2 29.907 107 68 2 35 140 112 212 2.16e-11 60.8
Msa0375310 AT1G47500.2 36.842 95 58 2 38 130 201 295 2.23e-11 60.5
Msa0375310 AT4G34110.1 41.053 95 46 3 35 124 35 124 2.43e-11 60.8
Msa0375310 AT3G10400.1 39.241 79 47 1 36 113 57 135 2.57e-11 60.1
Msa0375310 AT5G59860.1 41.558 77 39 2 41 116 76 147 4.48e-11 57.8
Msa0375310 AT5G40490.1 29.358 109 70 2 33 140 127 229 6.77e-11 59.3

Find 75 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTCATTAGGATTTAAA+TGG 0.219990 3_1:-74987292 Msa0375310:intron
TTGTTGTCGTTGGCACATTT+TGG 0.267097 3_1:-74987021 Msa0375310:three_prime_UTR
AGCTAAGTCTTCAATCAAAA+TGG 0.296905 3_1:-74988154 Msa0375310:exon
AGCGGCGGTGGTGGTGGATA+TGG 0.301646 3_1:-74987202 Msa0375310:CDS
ACTGGAAGATCAAGGGGATT+TGG 0.334462 3_1:-74987442 Msa0375310:CDS
GGCTACAGCGGCGGTGGTGG+TGG 0.338692 3_1:-74987208 Msa0375310:CDS
TACTAATTAGTGAGATGTTA+TGG 0.340024 3_1:-74987048 Msa0375310:three_prime_UTR
GGTGGATATGGCGGCGGTGG+CGG 0.363753 3_1:-74987190 Msa0375310:CDS
GGTGGATACGGCGGTGGTGG+CGG 0.366905 3_1:-74987169 Msa0375310:CDS
ATGGCTTTCTGTAACAAGAT+TGG 0.370753 3_1:-74988135 Msa0375310:CDS
GGATATGGCGGCGGTGGCGG+TGG 0.386257 3_1:-74987187 Msa0375310:CDS
GGCGGCGGTGGCGGTGGATA+CGG 0.395223 3_1:-74987181 Msa0375310:CDS
GGCGGTGGATACGGCGGTGG+TGG 0.396036 3_1:-74987172 Msa0375310:CDS
CAGGCTGGTGGACCTCGTTC+CGG 0.406159 3_1:-74987235 Msa0375310:CDS
TGTTGATGACCAGTCTCTTA+AGG 0.428494 3_1:-74987905 Msa0375310:CDS
GGTGGCTACAGCGGCGGTGG+TGG 0.430233 3_1:-74987211 Msa0375310:CDS
GGTGGTGGATATGGCGGCGG+TGG 0.432808 3_1:-74987193 Msa0375310:CDS
ACGGCGGTGGTGGCGGCGGT+TGG 0.433529 3_1:-74987162 Msa0375310:CDS
AAAATAAGATAATAGAATGT+TGG 0.440908 3_1:-74986959 Msa0375310:three_prime_UTR
TGTGGTGTAATCATAATAAT+CGG 0.443694 3_1:+74986766 None:intergenic
AGAGAAGAGTGAAGCGGCTA+GGG 0.447560 3_1:+74988670 None:intergenic
GGTGGACCTCGTTCCGGAGG+TGG 0.452560 3_1:-74987229 Msa0375310:CDS
GGTGGCGGTGGATACGGCGG+TGG 0.453942 3_1:-74987175 Msa0375310:CDS
TCCATTGTCTTACTGTGTAC+CGG 0.459436 3_1:-74986826 Msa0375310:three_prime_UTR
GGATACGGCGGTGGTGGCGG+CGG 0.459808 3_1:-74987166 Msa0375310:CDS
TTGTTCATTAGGATTTAAAT+GGG 0.460304 3_1:-74987291 Msa0375310:intron
TAGTTAAGCATGGATGAAAC+AGG 0.461015 3_1:+74988072 None:intergenic
GGAGGTGGCTACAGCGGCGG+TGG 0.487299 3_1:-74987214 Msa0375310:CDS
GAGAGAAGAGTGAAGCGGCT+AGG 0.488694 3_1:+74988669 None:intergenic
AGCACTCTCCATGGATGGAC+AGG 0.490812 3_1:-74987383 Msa0375310:intron
GGCGGTGGCGGTGGATACGG+CGG 0.512693 3_1:-74987178 Msa0375310:CDS
ATAGAGACACTGGAAGATCA+AGG 0.517492 3_1:-74987450 Msa0375310:CDS
ACCGCCGCTGTAGCCACCTC+CGG 0.525279 3_1:+74987216 None:intergenic
TAAATGCATCCTTAAGAGAC+TGG 0.532048 3_1:+74987896 None:intergenic
AAGGATGCATTTACAACCTA+CGG 0.532917 3_1:-74987886 Msa0375310:CDS
GGTGGTGGTGGATATGGCGG+CGG 0.535068 3_1:-74987196 Msa0375310:CDS
GGTCATCAACATGGTAAGAA+AGG 0.538171 3_1:+74987917 None:intergenic
TATGAACTTGTTATGGCGAG+TGG 0.538491 3_1:-74987076 Msa0375310:three_prime_UTR
ATCATTTGATGGTGGTGCAT+TGG 0.538715 3_1:-74986799 Msa0375310:three_prime_UTR
TACACCACATCATTTGATGA+TGG 0.538977 3_1:-74986752 Msa0375310:three_prime_UTR
TATTACAACCTGTCCATCCA+TGG 0.550532 3_1:+74987375 None:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 3_1:-74987254 Msa0375310:CDS
TGAAGTTGCAGACTCTTCAC+TGG 0.556568 3_1:+74987405 None:intergenic
GTACCGGTCACATCATTTGA+TGG 0.556896 3_1:-74986810 Msa0375310:three_prime_UTR
TGCAACTTCAGCACTCTCCA+TGG 0.559718 3_1:-74987392 Msa0375310:CDS
AACCTACGGAGAAGTGGTTG+AGG 0.563954 3_1:-74987872 Msa0375310:CDS
ACTTCAGCACTCTCCATGGA+TGG 0.565520 3_1:-74987388 Msa0375310:CDS
GAGTAGCACCTTGCCTCAAG+AGG 0.579009 3_1:+74988109 None:intergenic
GTTATCACTGATAGAGACAC+TGG 0.581409 3_1:-74987460 Msa0375310:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 3_1:-74987250 Msa0375310:CDS
CCACCATCAAATGATGTGAC+CGG 0.588631 3_1:+74986807 None:intergenic
GGCGGTGGTGGTGGATATGG+CGG 0.588717 3_1:-74987199 Msa0375310:CDS
TCCGGAGGTGGCTACAGCGG+CGG 0.590630 3_1:-74987217 Msa0375310:CDS
TCTGTTTATGAGAATAGTCG+TGG 0.591571 3_1:-74986902 Msa0375310:three_prime_UTR
TAGAGACACTGGAAGATCAA+GGG 0.594765 3_1:-74987449 Msa0375310:CDS
CAGTAAGACAATGGAAACAT+TGG 0.602106 3_1:+74986834 None:intergenic
ACCTACGGAGAAGTGGTTGA+GGG 0.603405 3_1:-74987871 Msa0375310:intron
AGAGACACTGGAAGATCAAG+GGG 0.604078 3_1:-74987448 Msa0375310:CDS
CTGTAGCCACCTCCGGAACG+AGG 0.604534 3_1:+74987223 None:intergenic
ATTTACAACCTACGGAGAAG+TGG 0.607456 3_1:-74987878 Msa0375310:CDS
GCTGGTGGACCTCGTTCCGG+AGG 0.609683 3_1:-74987232 Msa0375310:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 3_1:+74988062 None:intergenic
CGTTCCGGAGGTGGCTACAG+CGG 0.630122 3_1:-74987220 Msa0375310:CDS
TACGAGAGAGAAGAGTGAAG+CGG 0.631010 3_1:+74988664 None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 3_1:-74988117 Msa0375310:CDS
TAAGAGACTGGTCATCAACA+TGG 0.631495 3_1:+74987908 None:intergenic
ACCGGTACACAGTAAGACAA+TGG 0.636885 3_1:+74986825 None:intergenic
TAGACACAAGAACTCAACAC+AGG 0.651558 3_1:+74987106 None:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 3_1:+74987252 None:intergenic
ACAAGATTGGAAACCTCTTG+AGG 0.658250 3_1:-74988122 Msa0375310:CDS
ACCCTCAACCACTTCTCCGT+AGG 0.658961 3_1:+74987870 None:intergenic
GCAAATGATAGACAGGCTGG+TGG 0.673979 3_1:-74987247 Msa0375310:CDS
TGCACCATCATCAAATGATG+TGG 0.684822 3_1:+74986748 None:intergenic
CCGGTCACATCATTTGATGG+TGG 0.696790 3_1:-74986807 Msa0375310:three_prime_UTR
AAAGCTTGCTTGAAGACATG+TGG 0.718559 3_1:+74988043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTATAATAAATAACTT+TGG - chr3_1:74987940-74987959 Msa0375310:intron 10.0%
!!! GTTTTTATAATAAATAACTT+TGG - chr3_1:74987940-74987959 Msa0375310:intron 10.0%
!!! TTAATTTGTAATCATGATAT+CGG + chr3_1:74986981-74987000 None:intergenic 15.0%
!!! TTTTATTTGTATAAGCTATT+AGG - chr3_1:74987020-74987039 Msa0375310:three_prime_UTR 15.0%
!! TTATGTTATTGTTATAATTG+TGG - chr3_1:74987212-74987231 Msa0375310:CDS 15.0%
!!! AAAATTTTATGAACTTGTTA+TGG - chr3_1:74988359-74988378 Msa0375310:intron 15.0%
!! AAAATAAGATAATAGAATGT+TGG - chr3_1:74988483-74988502 Msa0375310:intron 15.0%
!!! TTAATTTGTAATCATGATAT+CGG + chr3_1:74986981-74987000 None:intergenic 15.0%
!!! TTTTATTTGTATAAGCTATT+AGG - chr3_1:74987020-74987039 Msa0375310:three_prime_UTR 15.0%
!! TTATGTTATTGTTATAATTG+TGG - chr3_1:74987212-74987231 Msa0375310:CDS 15.0%
!!! AAAATTTTATGAACTTGTTA+TGG - chr3_1:74988359-74988378 Msa0375310:intron 15.0%
!! AAAATAAGATAATAGAATGT+TGG - chr3_1:74988483-74988502 Msa0375310:intron 15.0%
!! AAATCACAAAAATCAATATC+AGG + chr3_1:74987171-74987190 None:intergenic 20.0%
!!! TTTATCTAGTTTTTTTATGC+TGG - chr3_1:74987444-74987463 Msa0375310:CDS 20.0%
!!! TCTAATAAAATGTATGGTTT+TGG - chr3_1:74987486-74987505 Msa0375310:intron 20.0%
!! GAATGTTAGAAGTTAAATTT+GGG - chr3_1:74987691-74987710 Msa0375310:intron 20.0%
!!! ATTCTAATTGTCATTTTAGT+CGG - chr3_1:74988113-74988132 Msa0375310:CDS 20.0%
!! TTGTTCATTAGGATTTAAAT+GGG - chr3_1:74988151-74988170 Msa0375310:exon 20.0%
!! AAATCACAAAAATCAATATC+AGG + chr3_1:74987171-74987190 None:intergenic 20.0%
!!! TTTATCTAGTTTTTTTATGC+TGG - chr3_1:74987444-74987463 Msa0375310:CDS 20.0%
!!! TCTAATAAAATGTATGGTTT+TGG - chr3_1:74987486-74987505 Msa0375310:intron 20.0%
!! GAATGTTAGAAGTTAAATTT+GGG - chr3_1:74987691-74987710 Msa0375310:intron 20.0%
!!! ATTCTAATTGTCATTTTAGT+CGG - chr3_1:74988113-74988132 Msa0375310:CDS 20.0%
!! TTGTTCATTAGGATTTAAAT+GGG - chr3_1:74988151-74988170 Msa0375310:exon 20.0%
!! AGCTTAAATCATTTTCTACT+GGG - chr3_1:74986731-74986750 Msa0375310:three_prime_UTR 25.0%
! ACAAAAAAGAGAAACGAAAA+TGG + chr3_1:74986868-74986887 None:intergenic 25.0%
!!! ATGATTCAAATTCGCTTTTT+AGG - chr3_1:74986945-74986964 Msa0375310:three_prime_UTR 25.0%
!!! TGATTCAAATTCGCTTTTTA+GGG - chr3_1:74986946-74986965 Msa0375310:three_prime_UTR 25.0%
!!! TTACTTTTGTATTAGGAACT+TGG - chr3_1:74987257-74987276 Msa0375310:CDS 25.0%
! GCTGGTTAGTATTATTATTA+TGG - chr3_1:74987462-74987481 Msa0375310:CDS 25.0%
!!! TATGGCTCTAATAAAATGTA+TGG - chr3_1:74987480-74987499 Msa0375310:intron 25.0%
!!! AAATGTATGGTTTTGGATTT+TGG - chr3_1:74987493-74987512 Msa0375310:intron 25.0%
! AGTGTTATGTTGATACAAAA+GGG + chr3_1:74987659-74987678 None:intergenic 25.0%
! GGAATGTTAGAAGTTAAATT+TGG - chr3_1:74987690-74987709 Msa0375310:intron 25.0%
!! TTGATACATTAAAGTGTCTT+TGG - chr3_1:74987864-74987883 Msa0375310:intron 25.0%
! CTTGTTCATTAGGATTTAAA+TGG - chr3_1:74988150-74988169 Msa0375310:exon 25.0%
! TACTAATTAGTGAGATGTTA+TGG - chr3_1:74988394-74988413 Msa0375310:intron 25.0%
!!! TGGTTTTTCAGTGTTTTTAT+AGG - chr3_1:74988441-74988460 Msa0375310:intron 25.0%
!! GCAGTATTTAGGTATATTTT+TGG - chr3_1:74988573-74988592 Msa0375310:intron 25.0%
!!! GTATTTAGGTATATTTTTGG+TGG - chr3_1:74988576-74988595 Msa0375310:intron 25.0%
! TGTGGTGTAATCATAATAAT+CGG + chr3_1:74988679-74988698 None:intergenic 25.0%
!! AGCTTAAATCATTTTCTACT+GGG - chr3_1:74986731-74986750 Msa0375310:three_prime_UTR 25.0%
! ACAAAAAAGAGAAACGAAAA+TGG + chr3_1:74986868-74986887 None:intergenic 25.0%
!!! ATGATTCAAATTCGCTTTTT+AGG - chr3_1:74986945-74986964 Msa0375310:three_prime_UTR 25.0%
!!! TGATTCAAATTCGCTTTTTA+GGG - chr3_1:74986946-74986965 Msa0375310:three_prime_UTR 25.0%
!!! TTACTTTTGTATTAGGAACT+TGG - chr3_1:74987257-74987276 Msa0375310:CDS 25.0%
! GCTGGTTAGTATTATTATTA+TGG - chr3_1:74987462-74987481 Msa0375310:CDS 25.0%
!!! TATGGCTCTAATAAAATGTA+TGG - chr3_1:74987480-74987499 Msa0375310:intron 25.0%
!!! AAATGTATGGTTTTGGATTT+TGG - chr3_1:74987493-74987512 Msa0375310:intron 25.0%
! AGTGTTATGTTGATACAAAA+GGG + chr3_1:74987659-74987678 None:intergenic 25.0%
! GGAATGTTAGAAGTTAAATT+TGG - chr3_1:74987690-74987709 Msa0375310:intron 25.0%
!! TTGATACATTAAAGTGTCTT+TGG - chr3_1:74987864-74987883 Msa0375310:intron 25.0%
! CTTGTTCATTAGGATTTAAA+TGG - chr3_1:74988150-74988169 Msa0375310:exon 25.0%
! TACTAATTAGTGAGATGTTA+TGG - chr3_1:74988394-74988413 Msa0375310:intron 25.0%
!!! TGGTTTTTCAGTGTTTTTAT+AGG - chr3_1:74988441-74988460 Msa0375310:intron 25.0%
!! GCAGTATTTAGGTATATTTT+TGG - chr3_1:74988573-74988592 Msa0375310:intron 25.0%
!!! GTATTTAGGTATATTTTTGG+TGG - chr3_1:74988576-74988595 Msa0375310:intron 25.0%
! TGTGGTGTAATCATAATAAT+CGG + chr3_1:74988679-74988698 None:intergenic 25.0%
! GAGCTTAAATCATTTTCTAC+TGG - chr3_1:74986730-74986749 Msa0375310:three_prime_UTR 30.0%
!!! TTCTCTTTTTTGTTGATTCG+TGG - chr3_1:74986875-74986894 Msa0375310:three_prime_UTR 30.0%
TTGTGGTTATGTCAATAATC+TGG - chr3_1:74987229-74987248 Msa0375310:CDS 30.0%
TGTGGTTATGTCAATAATCT+GGG - chr3_1:74987230-74987249 Msa0375310:CDS 30.0%
!!! GGGTTTGTTACTTTTGTATT+AGG - chr3_1:74987250-74987269 Msa0375310:CDS 30.0%
! TTTTGTATTAGGAACTTGGA+AGG - chr3_1:74987261-74987280 Msa0375310:CDS 30.0%
AGCTAAGTCTTCAATCAAAA+TGG - chr3_1:74987288-74987307 Msa0375310:intron 30.0%
!! TTTCATTGGAGGTATTGATT+TGG - chr3_1:74987420-74987439 Msa0375310:CDS 30.0%
!! GTTTTGGATTTTGGTATCAT+AGG - chr3_1:74987502-74987521 Msa0375310:intron 30.0%
GTGTTATGTTGATACAAAAG+GGG + chr3_1:74987658-74987677 None:intergenic 30.0%
CAGTGTTATGTTGATACAAA+AGG + chr3_1:74987660-74987679 None:intergenic 30.0%
TGAAGAGTAAGTCAAATTTC+CGG - chr3_1:74987838-74987857 Msa0375310:intron 30.0%
CACTTTAATGTATCAACTAC+CGG + chr3_1:74987860-74987879 None:intergenic 30.0%
!!! TTATGGTTTTTTGTTGTCGT+TGG - chr3_1:74988411-74988430 Msa0375310:intron 30.0%
! GAGCTTAAATCATTTTCTAC+TGG - chr3_1:74986730-74986749 Msa0375310:three_prime_UTR 30.0%
!!! TTCTCTTTTTTGTTGATTCG+TGG - chr3_1:74986875-74986894 Msa0375310:three_prime_UTR 30.0%
TTGTGGTTATGTCAATAATC+TGG - chr3_1:74987229-74987248 Msa0375310:CDS 30.0%
TGTGGTTATGTCAATAATCT+GGG - chr3_1:74987230-74987249 Msa0375310:CDS 30.0%
!!! GGGTTTGTTACTTTTGTATT+AGG - chr3_1:74987250-74987269 Msa0375310:CDS 30.0%
! TTTTGTATTAGGAACTTGGA+AGG - chr3_1:74987261-74987280 Msa0375310:CDS 30.0%
AGCTAAGTCTTCAATCAAAA+TGG - chr3_1:74987288-74987307 Msa0375310:intron 30.0%
!! TTTCATTGGAGGTATTGATT+TGG - chr3_1:74987420-74987439 Msa0375310:CDS 30.0%
!! GTTTTGGATTTTGGTATCAT+AGG - chr3_1:74987502-74987521 Msa0375310:intron 30.0%
GTGTTATGTTGATACAAAAG+GGG + chr3_1:74987658-74987677 None:intergenic 30.0%
CAGTGTTATGTTGATACAAA+AGG + chr3_1:74987660-74987679 None:intergenic 30.0%
TGAAGAGTAAGTCAAATTTC+CGG - chr3_1:74987838-74987857 Msa0375310:intron 30.0%
CACTTTAATGTATCAACTAC+CGG + chr3_1:74987860-74987879 None:intergenic 30.0%
!!! TTATGGTTTTTTGTTGTCGT+TGG - chr3_1:74988411-74988430 Msa0375310:intron 30.0%
ATCCCTAAAACCCTAATTCT+CGG - chr3_1:74986813-74986832 Msa0375310:three_prime_UTR 35.0%
! AACCGAGAATTAGGGTTTTA+GGG + chr3_1:74986818-74986837 None:intergenic 35.0%
GAGTTATGAACCGAGAATTA+GGG + chr3_1:74986826-74986845 None:intergenic 35.0%
TGAGTTATGAACCGAGAATT+AGG + chr3_1:74986827-74986846 None:intergenic 35.0%
ATGGCTTTCTGTAACAAGAT+TGG - chr3_1:74987307-74987326 Msa0375310:intron 35.0%
TAGTTAAGCATGGATGAAAC+AGG + chr3_1:74987373-74987392 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG - chr3_1:74987406-74987425 Msa0375310:CDS 35.0%
TAAATGCATCCTTAAGAGAC+TGG + chr3_1:74987549-74987568 None:intergenic 35.0%
AAGGATGCATTTACAACCTA+CGG - chr3_1:74987556-74987575 Msa0375310:intron 35.0%
! ACATAACACTGCATTGACAT+TGG - chr3_1:74987669-74987688 Msa0375310:intron 35.0%
!! GCATCTGCTTTGTTTGATTA+TGG - chr3_1:74987916-74987935 Msa0375310:CDS 35.0%
CTGACATACTCTTGTTCATT+AGG - chr3_1:74988140-74988159 Msa0375310:exon 35.0%
TCTGTTTATGAGAATAGTCG+TGG - chr3_1:74988540-74988559 Msa0375310:intron 35.0%
GCACAAAAACTGCAGTATTT+AGG - chr3_1:74988562-74988581 Msa0375310:intron 35.0%
CAGTAAGACAATGGAAACAT+TGG + chr3_1:74988611-74988630 None:intergenic 35.0%
TACACCACATCATTTGATGA+TGG - chr3_1:74988690-74988709 Msa0375310:five_prime_UTR 35.0%
ATCCCTAAAACCCTAATTCT+CGG - chr3_1:74986813-74986832 Msa0375310:three_prime_UTR 35.0%
! AACCGAGAATTAGGGTTTTA+GGG + chr3_1:74986818-74986837 None:intergenic 35.0%
GAGTTATGAACCGAGAATTA+GGG + chr3_1:74986826-74986845 None:intergenic 35.0%
TGAGTTATGAACCGAGAATT+AGG + chr3_1:74986827-74986846 None:intergenic 35.0%
ATGGCTTTCTGTAACAAGAT+TGG - chr3_1:74987307-74987326 Msa0375310:intron 35.0%
TAGTTAAGCATGGATGAAAC+AGG + chr3_1:74987373-74987392 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG - chr3_1:74987406-74987425 Msa0375310:CDS 35.0%
TAAATGCATCCTTAAGAGAC+TGG + chr3_1:74987549-74987568 None:intergenic 35.0%
AAGGATGCATTTACAACCTA+CGG - chr3_1:74987556-74987575 Msa0375310:intron 35.0%
! ACATAACACTGCATTGACAT+TGG - chr3_1:74987669-74987688 Msa0375310:intron 35.0%
!! GCATCTGCTTTGTTTGATTA+TGG - chr3_1:74987916-74987935 Msa0375310:CDS 35.0%
CTGACATACTCTTGTTCATT+AGG - chr3_1:74988140-74988159 Msa0375310:exon 35.0%
TCTGTTTATGAGAATAGTCG+TGG - chr3_1:74988540-74988559 Msa0375310:intron 35.0%
GCACAAAAACTGCAGTATTT+AGG - chr3_1:74988562-74988581 Msa0375310:intron 35.0%
CAGTAAGACAATGGAAACAT+TGG + chr3_1:74988611-74988630 None:intergenic 35.0%
TACACCACATCATTTGATGA+TGG - chr3_1:74988690-74988709 Msa0375310:five_prime_UTR 35.0%
!!! TAGGGTTTTAGGGATGAGAA+AGG + chr3_1:74986808-74986827 None:intergenic 40.0%
! GAACCGAGAATTAGGGTTTT+AGG + chr3_1:74986819-74986838 None:intergenic 40.0%
ACAAGATTGGAAACCTCTTG+AGG - chr3_1:74987320-74987339 Msa0375310:intron 40.0%
! AAAGCTTGCTTGAAGACATG+TGG + chr3_1:74987402-74987421 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG - chr3_1:74987409-74987428 Msa0375310:CDS 40.0%
GGTCATCAACATGGTAAGAA+AGG + chr3_1:74987528-74987547 None:intergenic 40.0%
! TAAGAGACTGGTCATCAACA+TGG + chr3_1:74987537-74987556 None:intergenic 40.0%
!! TGTTGATGACCAGTCTCTTA+AGG - chr3_1:74987537-74987556 Msa0375310:intron 40.0%
ATTTACAACCTACGGAGAAG+TGG - chr3_1:74987564-74987583 Msa0375310:intron 40.0%
TGCTGAAGAACACATTTCAG+TGG - chr3_1:74987728-74987747 Msa0375310:intron 40.0%
GCTGAAGAACACATTTCAGT+GGG - chr3_1:74987729-74987748 Msa0375310:intron 40.0%
CTGAAGAACACATTTCAGTG+GGG - chr3_1:74987730-74987749 Msa0375310:intron 40.0%
GTTATCACTGATAGAGACAC+TGG - chr3_1:74987982-74988001 Msa0375310:intron 40.0%
ATAGAGACACTGGAAGATCA+AGG - chr3_1:74987992-74988011 Msa0375310:intron 40.0%
TAGAGACACTGGAAGATCAA+GGG - chr3_1:74987993-74988012 Msa0375310:intron 40.0%
TATTACAACCTGTCCATCCA+TGG + chr3_1:74988070-74988089 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG - chr3_1:74988188-74988207 Msa0375310:intron 40.0%
AGCCTGTCTATCATTTGCAT+AGG + chr3_1:74988193-74988212 None:intergenic 40.0%
TATGCAAATGATAGACAGGC+TGG - chr3_1:74988192-74988211 Msa0375310:intron 40.0%
TAGACACAAGAACTCAACAC+AGG + chr3_1:74988339-74988358 None:intergenic 40.0%
!! TATGAACTTGTTATGGCGAG+TGG - chr3_1:74988366-74988385 Msa0375310:intron 40.0%
! TTGTTGTCGTTGGCACATTT+TGG - chr3_1:74988421-74988440 Msa0375310:intron 40.0%
TCCATTGTCTTACTGTGTAC+CGG - chr3_1:74988616-74988635 Msa0375310:intron 40.0%
!! ATCATTTGATGGTGGTGCAT+TGG - chr3_1:74988643-74988662 Msa0375310:intron 40.0%
TGCACCATCATCAAATGATG+TGG + chr3_1:74988697-74988716 None:intergenic 40.0%
!!! TAGGGTTTTAGGGATGAGAA+AGG + chr3_1:74986808-74986827 None:intergenic 40.0%
! GAACCGAGAATTAGGGTTTT+AGG + chr3_1:74986819-74986838 None:intergenic 40.0%
ACAAGATTGGAAACCTCTTG+AGG - chr3_1:74987320-74987339 Msa0375310:intron 40.0%
! AAAGCTTGCTTGAAGACATG+TGG + chr3_1:74987402-74987421 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG - chr3_1:74987409-74987428 Msa0375310:CDS 40.0%
GGTCATCAACATGGTAAGAA+AGG + chr3_1:74987528-74987547 None:intergenic 40.0%
! TAAGAGACTGGTCATCAACA+TGG + chr3_1:74987537-74987556 None:intergenic 40.0%
!! TGTTGATGACCAGTCTCTTA+AGG - chr3_1:74987537-74987556 Msa0375310:intron 40.0%
ATTTACAACCTACGGAGAAG+TGG - chr3_1:74987564-74987583 Msa0375310:intron 40.0%
TGCTGAAGAACACATTTCAG+TGG - chr3_1:74987728-74987747 Msa0375310:intron 40.0%
GCTGAAGAACACATTTCAGT+GGG - chr3_1:74987729-74987748 Msa0375310:intron 40.0%
CTGAAGAACACATTTCAGTG+GGG - chr3_1:74987730-74987749 Msa0375310:intron 40.0%
GTTATCACTGATAGAGACAC+TGG - chr3_1:74987982-74988001 Msa0375310:intron 40.0%
ATAGAGACACTGGAAGATCA+AGG - chr3_1:74987992-74988011 Msa0375310:intron 40.0%
TAGAGACACTGGAAGATCAA+GGG - chr3_1:74987993-74988012 Msa0375310:intron 40.0%
TATTACAACCTGTCCATCCA+TGG + chr3_1:74988070-74988089 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG - chr3_1:74988188-74988207 Msa0375310:intron 40.0%
AGCCTGTCTATCATTTGCAT+AGG + chr3_1:74988193-74988212 None:intergenic 40.0%
TATGCAAATGATAGACAGGC+TGG - chr3_1:74988192-74988211 Msa0375310:intron 40.0%
TAGACACAAGAACTCAACAC+AGG + chr3_1:74988339-74988358 None:intergenic 40.0%
!! TATGAACTTGTTATGGCGAG+TGG - chr3_1:74988366-74988385 Msa0375310:intron 40.0%
! TTGTTGTCGTTGGCACATTT+TGG - chr3_1:74988421-74988440 Msa0375310:intron 40.0%
TCCATTGTCTTACTGTGTAC+CGG - chr3_1:74988616-74988635 Msa0375310:intron 40.0%
!! ATCATTTGATGGTGGTGCAT+TGG - chr3_1:74988643-74988662 Msa0375310:intron 40.0%
TGCACCATCATCAAATGATG+TGG + chr3_1:74988697-74988716 None:intergenic 40.0%
TACGAGAGAGAAGAGTGAAG+CGG + chr3_1:74986781-74986800 None:intergenic 45.0%
ATTGGAAACCTCTTGAGGCA+AGG - chr3_1:74987325-74987344 Msa0375310:intron 45.0%
AGAGACACTGGAAGATCAAG+GGG - chr3_1:74987994-74988013 Msa0375310:intron 45.0%
ACTGGAAGATCAAGGGGATT+TGG - chr3_1:74988000-74988019 Msa0375310:intron 45.0%
TGAAGTTGCAGACTCTTCAC+TGG + chr3_1:74988040-74988059 None:intergenic 45.0%
ACCGGTACACAGTAAGACAA+TGG + chr3_1:74988620-74988639 None:intergenic 45.0%
! GTACCGGTCACATCATTTGA+TGG - chr3_1:74988632-74988651 Msa0375310:intron 45.0%
CCACCATCAAATGATGTGAC+CGG + chr3_1:74988638-74988657 None:intergenic 45.0%
TACGAGAGAGAAGAGTGAAG+CGG + chr3_1:74986781-74986800 None:intergenic 45.0%
ATTGGAAACCTCTTGAGGCA+AGG - chr3_1:74987325-74987344 Msa0375310:intron 45.0%
AGAGACACTGGAAGATCAAG+GGG - chr3_1:74987994-74988013 Msa0375310:intron 45.0%
ACTGGAAGATCAAGGGGATT+TGG - chr3_1:74988000-74988019 Msa0375310:intron 45.0%
TGAAGTTGCAGACTCTTCAC+TGG + chr3_1:74988040-74988059 None:intergenic 45.0%
ACCGGTACACAGTAAGACAA+TGG + chr3_1:74988620-74988639 None:intergenic 45.0%
! GTACCGGTCACATCATTTGA+TGG - chr3_1:74988632-74988651 Msa0375310:intron 45.0%
CCACCATCAAATGATGTGAC+CGG + chr3_1:74988638-74988657 None:intergenic 45.0%
AGAGAAGAGTGAAGCGGCTA+GGG + chr3_1:74986775-74986794 None:intergenic 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG + chr3_1:74987383-74987402 None:intergenic 50.0%
AACCTACGGAGAAGTGGTTG+AGG - chr3_1:74987570-74987589 Msa0375310:intron 50.0%
ACCTACGGAGAAGTGGTTGA+GGG - chr3_1:74987571-74987590 Msa0375310:intron 50.0%
TGCAACTTCAGCACTCTCCA+TGG - chr3_1:74988050-74988069 Msa0375310:CDS 50.0%
ACTTCAGCACTCTCCATGGA+TGG - chr3_1:74988054-74988073 Msa0375310:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG - chr3_1:74988195-74988214 Msa0375310:intron 50.0%
CCGGTCACATCATTTGATGG+TGG - chr3_1:74988635-74988654 Msa0375310:intron 50.0%
AGAGAAGAGTGAAGCGGCTA+GGG + chr3_1:74986775-74986794 None:intergenic 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG + chr3_1:74987383-74987402 None:intergenic 50.0%
AACCTACGGAGAAGTGGTTG+AGG - chr3_1:74987570-74987589 Msa0375310:intron 50.0%
ACCTACGGAGAAGTGGTTGA+GGG - chr3_1:74987571-74987590 Msa0375310:intron 50.0%
TGCAACTTCAGCACTCTCCA+TGG - chr3_1:74988050-74988069 Msa0375310:CDS 50.0%
ACTTCAGCACTCTCCATGGA+TGG - chr3_1:74988054-74988073 Msa0375310:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG - chr3_1:74988195-74988214 Msa0375310:intron 50.0%
CCGGTCACATCATTTGATGG+TGG - chr3_1:74988635-74988654 Msa0375310:intron 50.0%
GAGAGAAGAGTGAAGCGGCT+AGG + chr3_1:74986776-74986795 None:intergenic 55.0%
GAGTAGCACCTTGCCTCAAG+AGG + chr3_1:74987336-74987355 None:intergenic 55.0%
ACCCTCAACCACTTCTCCGT+AGG + chr3_1:74987575-74987594 None:intergenic 55.0%
AGCACTCTCCATGGATGGAC+AGG - chr3_1:74988059-74988078 Msa0375310:CDS 55.0%
GAGAGAAGAGTGAAGCGGCT+AGG + chr3_1:74986776-74986795 None:intergenic 55.0%
GAGTAGCACCTTGCCTCAAG+AGG + chr3_1:74987336-74987355 None:intergenic 55.0%
ACCCTCAACCACTTCTCCGT+AGG + chr3_1:74987575-74987594 None:intergenic 55.0%
AGCACTCTCCATGGATGGAC+AGG - chr3_1:74988059-74988078 Msa0375310:CDS 55.0%
! CAGGCTGGTGGACCTCGTTC+CGG - chr3_1:74988207-74988226 Msa0375310:intron 65.0%
CTGTAGCCACCTCCGGAACG+AGG + chr3_1:74988222-74988241 None:intergenic 65.0%
CGTTCCGGAGGTGGCTACAG+CGG - chr3_1:74988222-74988241 Msa0375310:intron 65.0%
!! AGCGGCGGTGGTGGTGGATA+TGG - chr3_1:74988240-74988259 Msa0375310:intron 65.0%
!! GGCGGTGGTGGTGGATATGG+CGG - chr3_1:74988243-74988262 Msa0375310:intron 65.0%
!! GGTGGTGGTGGATATGGCGG+CGG - chr3_1:74988246-74988265 Msa0375310:intron 65.0%
! CAGGCTGGTGGACCTCGTTC+CGG - chr3_1:74988207-74988226 Msa0375310:intron 65.0%
CTGTAGCCACCTCCGGAACG+AGG + chr3_1:74988222-74988241 None:intergenic 65.0%
CGTTCCGGAGGTGGCTACAG+CGG - chr3_1:74988222-74988241 Msa0375310:intron 65.0%
!! AGCGGCGGTGGTGGTGGATA+TGG - chr3_1:74988240-74988259 Msa0375310:intron 65.0%
!! GGCGGTGGTGGTGGATATGG+CGG - chr3_1:74988243-74988262 Msa0375310:intron 65.0%
!! GGTGGTGGTGGATATGGCGG+CGG - chr3_1:74988246-74988265 Msa0375310:intron 65.0%
! GCTGGTGGACCTCGTTCCGG+AGG - chr3_1:74988210-74988229 Msa0375310:intron 70.0%
GGTGGACCTCGTTCCGGAGG+TGG - chr3_1:74988213-74988232 Msa0375310:intron 70.0%
TCCGGAGGTGGCTACAGCGG+CGG - chr3_1:74988225-74988244 Msa0375310:intron 70.0%
ACCGCCGCTGTAGCCACCTC+CGG + chr3_1:74988229-74988248 None:intergenic 70.0%
!! GGTGGTGGATATGGCGGCGG+TGG - chr3_1:74988249-74988268 Msa0375310:intron 70.0%
GGTGGATATGGCGGCGGTGG+CGG - chr3_1:74988252-74988271 Msa0375310:intron 70.0%
! GGTGGATACGGCGGTGGTGG+CGG - chr3_1:74988273-74988292 Msa0375310:intron 70.0%
! GCTGGTGGACCTCGTTCCGG+AGG - chr3_1:74988210-74988229 Msa0375310:intron 70.0%
GGTGGACCTCGTTCCGGAGG+TGG - chr3_1:74988213-74988232 Msa0375310:intron 70.0%
TCCGGAGGTGGCTACAGCGG+CGG - chr3_1:74988225-74988244 Msa0375310:intron 70.0%
ACCGCCGCTGTAGCCACCTC+CGG + chr3_1:74988229-74988248 None:intergenic 70.0%
!! GGTGGTGGATATGGCGGCGG+TGG - chr3_1:74988249-74988268 Msa0375310:intron 70.0%
GGTGGATATGGCGGCGGTGG+CGG - chr3_1:74988252-74988271 Msa0375310:intron 70.0%
! GGTGGATACGGCGGTGGTGG+CGG - chr3_1:74988273-74988292 Msa0375310:intron 70.0%
GGAGGTGGCTACAGCGGCGG+TGG - chr3_1:74988228-74988247 Msa0375310:intron 75.0%
GGTGGCTACAGCGGCGGTGG+TGG - chr3_1:74988231-74988250 Msa0375310:intron 75.0%
! GGCTACAGCGGCGGTGGTGG+TGG - chr3_1:74988234-74988253 Msa0375310:intron 75.0%
! GGATATGGCGGCGGTGGCGG+TGG - chr3_1:74988255-74988274 Msa0375310:intron 75.0%
! GGCGGCGGTGGCGGTGGATA+CGG - chr3_1:74988261-74988280 Msa0375310:intron 75.0%
! GGCGGTGGCGGTGGATACGG+CGG - chr3_1:74988264-74988283 Msa0375310:intron 75.0%
! GGTGGCGGTGGATACGGCGG+TGG - chr3_1:74988267-74988286 Msa0375310:intron 75.0%
GGCGGTGGATACGGCGGTGG+TGG - chr3_1:74988270-74988289 Msa0375310:intron 75.0%
!! GGATACGGCGGTGGTGGCGG+CGG - chr3_1:74988276-74988295 Msa0375310:intron 75.0%
GGAGGTGGCTACAGCGGCGG+TGG - chr3_1:74988228-74988247 Msa0375310:intron 75.0%
GGTGGCTACAGCGGCGGTGG+TGG - chr3_1:74988231-74988250 Msa0375310:intron 75.0%
! GGCTACAGCGGCGGTGGTGG+TGG - chr3_1:74988234-74988253 Msa0375310:intron 75.0%
! GGATATGGCGGCGGTGGCGG+TGG - chr3_1:74988255-74988274 Msa0375310:intron 75.0%
! GGCGGCGGTGGCGGTGGATA+CGG - chr3_1:74988261-74988280 Msa0375310:intron 75.0%
! GGCGGTGGCGGTGGATACGG+CGG - chr3_1:74988264-74988283 Msa0375310:intron 75.0%
! GGTGGCGGTGGATACGGCGG+TGG - chr3_1:74988267-74988286 Msa0375310:intron 75.0%
GGCGGTGGATACGGCGGTGG+TGG - chr3_1:74988270-74988289 Msa0375310:intron 75.0%
!! GGATACGGCGGTGGTGGCGG+CGG - chr3_1:74988276-74988295 Msa0375310:intron 75.0%
!!! ACGGCGGTGGTGGCGGCGGT+TGG - chr3_1:74988280-74988299 Msa0375310:intron 80.0%
!!! ACGGCGGTGGTGGCGGCGGT+TGG - chr3_1:74988280-74988299 Msa0375310:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 74986716 74988748 74986716 ID=Msa0375310;Name=Msa0375310
chr3_1 mRNA 74986716 74988748 74986716 ID=Msa0375310-mRNA-1;Parent=Msa0375310;Name=Msa0375310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=117|1|1|1|0.75|0.6|5|443|146
chr3_1 exon 74986716 74987302 74986716 ID=Msa0375310-mRNA-1:exon:17502;Parent=Msa0375310-mRNA-1
chr3_1 exon 74987384 74987487 74987384 ID=Msa0375310-mRNA-1:exon:17501;Parent=Msa0375310-mRNA-1
chr3_1 exon 74987872 74987940 74987872 ID=Msa0375310-mRNA-1:exon:17500;Parent=Msa0375310-mRNA-1
chr3_1 exon 74988034 74988192 74988034 ID=Msa0375310-mRNA-1:exon:17499;Parent=Msa0375310-mRNA-1
chr3_1 exon 74988667 74988748 74988667 ID=Msa0375310-mRNA-1:exon:17498;Parent=Msa0375310-mRNA-1
chr3_1 five_prime_UTR 74988667 74988748 74988667 ID=Msa0375310-mRNA-1:five_prime_utr;Parent=Msa0375310-mRNA-1
chr3_1 five_prime_UTR 74988158 74988192 74988158 ID=Msa0375310-mRNA-1:five_prime_utr;Parent=Msa0375310-mRNA-1
chr3_1 CDS 74988034 74988157 74988034 ID=Msa0375310-mRNA-1:cds;Parent=Msa0375310-mRNA-1
chr3_1 CDS 74987872 74987940 74987872 ID=Msa0375310-mRNA-1:cds;Parent=Msa0375310-mRNA-1
chr3_1 CDS 74987384 74987487 74987384 ID=Msa0375310-mRNA-1:cds;Parent=Msa0375310-mRNA-1
chr3_1 CDS 74987159 74987302 74987159 ID=Msa0375310-mRNA-1:cds;Parent=Msa0375310-mRNA-1
chr3_1 three_prime_UTR 74986716 74987158 74986716 ID=Msa0375310-mRNA-1:three_prime_utr;Parent=Msa0375310-mRNA-1
Gene Sequence

>Msa0375310

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACTCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGACCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCTGCAACTTCAGCACTCTCCATGGATGGACAGGATTTAAATGGGCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTTCCGGAGGTGGCTACAGCGGCGGTGGTGGTGGATATGGCGGCGGTGGCGGTGGATACGGCGGTGGTGGCGGCGGTTGGTGA
Protein sequence

>Msa0375310

MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRSGGGYSGGGGGYGGGGGGYGGGGGGW*