Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403150 | XP_024635454.1 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403150 | sp|P46519|LEA14_SOYBN | 30.657 | 137 | 95 | 0 | 41 | 177 | 14 | 150 | 1.97e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403150 | A0A072V5S0 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0403150 | Msa0449760 | 0.852234 | 5.276111e-61 | -8.615850e-47 |
| Msa0356960 | Msa0403150 | 0.801862 | 7.368185e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403150 | MtrunA17_Chr3g0093721 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 590 |
| Msa0403150 | MtrunA17_Chr5g0441301 | 79.167 | 312 | 54 | 3 | 1 | 301 | 1 | 312 | 6.94e-171 | 476 |
| Msa0403150 | MtrunA17_Chr8g0348171 | 31.081 | 148 | 96 | 2 | 25 | 172 | 4 | 145 | 6.41e-21 | 87.4 |
| Msa0403150 | MtrunA17_Chr7g0248741 | 27.027 | 148 | 102 | 1 | 25 | 172 | 3 | 144 | 3.70e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403150 | AT2G44060.2 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 1.01e-159 | 449 |
| Msa0403150 | AT2G44060.1 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 1.01e-159 | 449 |
| Msa0403150 | AT2G46140.1 | 29.878 | 164 | 105 | 2 | 13 | 172 | 3 | 160 | 3.70e-17 | 77.8 |
| Msa0403150 | AT1G01470.1 | 28.667 | 150 | 101 | 1 | 23 | 172 | 2 | 145 | 5.88e-17 | 77.0 |
Find 89 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATTGATATTAACTATT+TGG | 0.135397 | 3_2:+32666015 | Msa0403150:CDS |
| ACCTTCAGGCCGAAGGATTT+TGG | 0.164344 | 3_2:+32666508 | Msa0403150:CDS |
| CCAAATAGTTAATATCAATT+AGG | 0.192476 | 3_2:-32666015 | None:intergenic |
| CAAATAGTTAATATCAATTA+GGG | 0.255310 | 3_2:-32666014 | None:intergenic |
| TCCTTCGGCCTGAAGGTAAT+TGG | 0.280836 | 3_2:-32666502 | None:intergenic |
| GTACCGCCTTCTTTGCTAAT+AGG | 0.281765 | 3_2:-32666625 | None:intergenic |
| AGATCAACCTTCACCTTATA+AGG | 0.293664 | 3_2:-32666190 | None:intergenic |
| GGGAAGTATCATTCCTTATA+AGG | 0.326085 | 3_2:+32666177 | Msa0403150:CDS |
| AGGGGAATCGGTACCGGATT+CGG | 0.326651 | 3_2:-32665995 | None:intergenic |
| TTGAGGAAACAGTTGGGTTT+GGG | 0.329702 | 3_2:+32665885 | Msa0403150:CDS |
| CGATGGGAGGAAGCTAGTTT+CGG | 0.342864 | 3_2:+32666045 | Msa0403150:CDS |
| ATTGAGGAAACAGTTGGGTT+TGG | 0.356214 | 3_2:+32665884 | Msa0403150:CDS |
| TCGGGTTTGATACCAGATTC+TGG | 0.359778 | 3_2:+32666064 | Msa0403150:CDS |
| GATGGGAGGAAGCTAGTTTC+GGG | 0.364581 | 3_2:+32666046 | Msa0403150:CDS |
| AGGGTTTCATTCAAGACATT+GGG | 0.374827 | 3_2:+32665855 | Msa0403150:CDS |
| TACATATGCGGATATTCAAC+CGG | 0.384028 | 3_2:+32666156 | Msa0403150:CDS |
| GAAACCAACTGCAGATGTTT+CGG | 0.390895 | 3_2:+32665907 | Msa0403150:CDS |
| ATAGTTGATGTTCCTGTGAT+TGG | 0.392201 | 3_2:+32666214 | Msa0403150:CDS |
| ATTGATGTTGACACACCCTT+TGG | 0.403399 | 3_2:+32666589 | Msa0403150:CDS |
| ATATCAGGCTTGTATGGAAT+CGG | 0.407998 | 3_2:-32666274 | None:intergenic |
| TAAACCAGAAATAGTGAAAA+GGG | 0.409076 | 3_2:+32665781 | Msa0403150:CDS |
| TTATAAGGAATGATACTTCC+CGG | 0.412721 | 3_2:-32666175 | None:intergenic |
| ACAAAAGGAAGGTGAGGAAA+AGG | 0.421788 | 3_2:+32665811 | Msa0403150:CDS |
| AGATCAATATCAGGCTTGTA+TGG | 0.422032 | 3_2:-32666280 | None:intergenic |
| TGCTATTCTTCATTTGAAGT+TGG | 0.426339 | 3_2:+32666345 | Msa0403150:CDS |
| ACTCAATGCCCTTGATTATG+AGG | 0.431327 | 3_2:+32666393 | Msa0403150:CDS |
| TTGATCTTCCAATTACCTTC+AGG | 0.437001 | 3_2:+32666494 | Msa0403150:CDS |
| TCATCATAAATCAATGTAAC+GGG | 0.441391 | 3_2:-32666124 | None:intergenic |
| TTAATATCAATTAGGGGAAT+CGG | 0.452858 | 3_2:-32666007 | None:intergenic |
| CCCAAAATCCTTCGGCCTGA+AGG | 0.461001 | 3_2:-32666509 | None:intergenic |
| ATAAACCAGAAATAGTGAAA+AGG | 0.464547 | 3_2:+32665780 | Msa0403150:CDS |
| GAAAAGGGGTGAAGAACAAA+AGG | 0.467028 | 3_2:+32665796 | Msa0403150:CDS |
| TCCAATTACCTTCAGGCCGA+AGG | 0.470165 | 3_2:+32666501 | Msa0403150:CDS |
| CCGTTTCCTCTCCATGTGCA+TGG | 0.475213 | 3_2:-32666093 | None:intergenic |
| AACTATTTGGTTGAGAGCGA+TGG | 0.481277 | 3_2:+32666028 | Msa0403150:CDS |
| CAAAAGGAAGGTGAGGAAAA+GGG | 0.483494 | 3_2:+32665812 | Msa0403150:CDS |
| AAGGGTTTCATTCAAGACAT+TGG | 0.489962 | 3_2:+32665854 | Msa0403150:CDS |
| AGACATTGGGGAGAAGATTG+AGG | 0.492962 | 3_2:+32665868 | Msa0403150:CDS |
| GCATGGATTGTACCAGAATC+TGG | 0.493186 | 3_2:-32666076 | None:intergenic |
| TGGAAGGATCACTATACCTA+TGG | 0.493367 | 3_2:+32666234 | Msa0403150:CDS |
| GAGAAGATTGAGGAAACAGT+TGG | 0.495120 | 3_2:+32665878 | Msa0403150:CDS |
| CTCCTTACTCTTCTTGAGAC+GGG | 0.498996 | 3_2:-32666650 | None:intergenic |
| TATCAGGCTTGTATGGAATC+GGG | 0.508761 | 3_2:-32666273 | None:intergenic |
| TGGCTTGGTGATGATAGGAT+TGG | 0.510174 | 3_2:+32666418 | Msa0403150:CDS |
| TCTCATAAAGAATCCGAATC+CGG | 0.510443 | 3_2:+32665982 | Msa0403150:CDS |
| TGGGACATGATGAGAGGAAA+AGG | 0.514116 | 3_2:+32666541 | Msa0403150:CDS |
| GGCAATTTCATCGCTCCAAA+GGG | 0.514585 | 3_2:-32666604 | None:intergenic |
| AGAAGATTGAGGAAACAGTT+GGG | 0.514812 | 3_2:+32665879 | Msa0403150:CDS |
| ATGCCCTTGATTATGAGGTA+TGG | 0.514840 | 3_2:+32666398 | Msa0403150:CDS |
| ACTATTTGGTTGAGAGCGAT+GGG | 0.525582 | 3_2:+32666029 | Msa0403150:CDS |
| CCATGCACATGGAGAGGAAA+CGG | 0.527270 | 3_2:+32666093 | Msa0403150:CDS |
| CCTCCTTACTCTTCTTGAGA+CGG | 0.529375 | 3_2:-32666651 | None:intergenic |
| TCAATTAGGGGAATCGGTAC+CGG | 0.529894 | 3_2:-32666001 | None:intergenic |
| AGGTATGGCTTGGTGATGAT+AGG | 0.530326 | 3_2:+32666413 | Msa0403150:CDS |
| GGATTTCTCAATACAGTGAA+GGG | 0.538251 | 3_2:+32665836 | Msa0403150:CDS |
| AAATTGCCTATTAGCAAAGA+AGG | 0.540155 | 3_2:+32666619 | Msa0403150:CDS |
| CTTGATTATGAGGTATGGCT+TGG | 0.543545 | 3_2:+32666403 | Msa0403150:CDS |
| ATGATGAGAGGAAAAGGTAC+AGG | 0.545961 | 3_2:+32666547 | Msa0403150:CDS |
| GTCATCATAAATCAATGTAA+CGG | 0.547056 | 3_2:-32666125 | None:intergenic |
| TATCATTCCTTATAAGGTGA+AGG | 0.548759 | 3_2:+32666183 | Msa0403150:CDS |
| CAAGCCATACCTCATAATCA+AGG | 0.553144 | 3_2:-32666402 | None:intergenic |
| AGTGCTGACCCAAAATCCTT+CGG | 0.556973 | 3_2:-32666517 | None:intergenic |
| TACCCGTCTCAAGAAGAGTA+AGG | 0.565557 | 3_2:+32666648 | Msa0403150:CDS |
| GGTACAGGATACACTATGAA+AGG | 0.566561 | 3_2:+32666562 | Msa0403150:CDS |
| AGGCAATTTCATCGCTCCAA+AGG | 0.571299 | 3_2:-32666605 | None:intergenic |
| TGGATTTCTCAATACAGTGA+AGG | 0.575361 | 3_2:+32665835 | Msa0403150:CDS |
| ATAGTGATCCTTCCAATCAC+AGG | 0.589173 | 3_2:-32666226 | None:intergenic |
| CTTGGTGATGATAGGATTGG+AGG | 0.590333 | 3_2:+32666421 | Msa0403150:CDS |
| ATCTCCGAAACATCTGCAGT+TGG | 0.593488 | 3_2:-32665911 | None:intergenic |
| AGGGGTGAAGAACAAAAGGA+AGG | 0.598618 | 3_2:+32665800 | Msa0403150:CDS |
| TACAATCCATGCACATGGAG+AGG | 0.614846 | 3_2:+32666087 | Msa0403150:CDS |
| GGGTTTCATTCAAGACATTG+GGG | 0.618306 | 3_2:+32665856 | Msa0403150:CDS |
| TTGATGTTCCTGTGATTGGA+AGG | 0.620198 | 3_2:+32666218 | Msa0403150:CDS |
| ACATATGCGGATATTCAACC+GGG | 0.623259 | 3_2:+32666157 | Msa0403150:CDS |
| AAGGAAGGTGAGGAAAAGGG+TGG | 0.625777 | 3_2:+32665815 | Msa0403150:CDS |
| AAGAAGAGTAAGGAGGATGG+TGG | 0.626714 | 3_2:+32666658 | Msa0403150:CDS |
| AAGCCATACCTCATAATCAA+GGG | 0.628460 | 3_2:-32666401 | None:intergenic |
| TGAAGAACAAAAGGAAGGTG+AGG | 0.629320 | 3_2:+32665805 | Msa0403150:CDS |
| CTCAAGAAGAGTAAGGAGGA+TGG | 0.634584 | 3_2:+32666655 | Msa0403150:CDS |
| CTTCAAATGAAGAATAGCAA+CGG | 0.645167 | 3_2:-32666341 | None:intergenic |
| GCACTTTGGGACATGATGAG+AGG | 0.649658 | 3_2:+32666535 | Msa0403150:CDS |
| CTATGTAGAGATGTCGACAT+CGG | 0.653141 | 3_2:+32665757 | None:intergenic |
| AAACCAGAAATAGTGAAAAG+GGG | 0.654731 | 3_2:+32665782 | Msa0403150:CDS |
| GGATGGTGGAGATGATGATG+AGG | 0.656596 | 3_2:+32666672 | Msa0403150:CDS |
| TCTGGTACAATCCATGCACA+TGG | 0.669950 | 3_2:+32666082 | Msa0403150:CDS |
| CCGTCTCAAGAAGAGTAAGG+AGG | 0.673482 | 3_2:+32666651 | Msa0403150:CDS |
| ATTTGGTTGAGAGCGATGGG+AGG | 0.702091 | 3_2:+32666032 | Msa0403150:CDS |
| AAATAGTTAATATCAATTAG+GGG | 0.704056 | 3_2:-32666013 | None:intergenic |
| TTGCCTATTAGCAAAGAAGG+CGG | 0.725605 | 3_2:+32666622 | Msa0403150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTTAATATCAATTAG+GGG | - | chr3_2:32666016-32666035 | None:intergenic | 15.0% |
| !! | CAAATAGTTAATATCAATTA+GGG | - | chr3_2:32666017-32666036 | None:intergenic | 15.0% |
| !! | AAATAGTTAATATCAATTAG+GGG | - | chr3_2:32666016-32666035 | None:intergenic | 15.0% |
| !! | CAAATAGTTAATATCAATTA+GGG | - | chr3_2:32666017-32666036 | None:intergenic | 15.0% |
| !! | CCAAATAGTTAATATCAATT+AGG | - | chr3_2:32666018-32666037 | None:intergenic | 20.0% |
| !! | CCTAATTGATATTAACTATT+TGG | + | chr3_2:32666015-32666034 | Msa0403150:CDS | 20.0% |
| !! | TGACATAAAAAATACATATG+CGG | + | chr3_2:32666144-32666163 | Msa0403150:CDS | 20.0% |
| !! | CCAAATAGTTAATATCAATT+AGG | - | chr3_2:32666018-32666037 | None:intergenic | 20.0% |
| !! | CCTAATTGATATTAACTATT+TGG | + | chr3_2:32666015-32666034 | Msa0403150:CDS | 20.0% |
| !! | TGACATAAAAAATACATATG+CGG | + | chr3_2:32666144-32666163 | Msa0403150:CDS | 20.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3_2:32665780-32665799 | Msa0403150:CDS | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3_2:32665781-32665800 | Msa0403150:CDS | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3_2:32665944-32665963 | None:intergenic | 25.0% |
| ! | TTAATATCAATTAGGGGAAT+CGG | - | chr3_2:32666010-32666029 | None:intergenic | 25.0% |
| ! | TCATCATAAATCAATGTAAC+GGG | - | chr3_2:32666127-32666146 | None:intergenic | 25.0% |
| ! | GTCATCATAAATCAATGTAA+CGG | - | chr3_2:32666128-32666147 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3_2:32666292-32666311 | None:intergenic | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3_2:32666370-32666389 | Msa0403150:CDS | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3_2:32666460-32666479 | Msa0403150:CDS | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3_2:32666461-32666480 | Msa0403150:CDS | 25.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3_2:32665780-32665799 | Msa0403150:CDS | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3_2:32665781-32665800 | Msa0403150:CDS | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3_2:32665944-32665963 | None:intergenic | 25.0% |
| ! | TTAATATCAATTAGGGGAAT+CGG | - | chr3_2:32666010-32666029 | None:intergenic | 25.0% |
| ! | TCATCATAAATCAATGTAAC+GGG | - | chr3_2:32666127-32666146 | None:intergenic | 25.0% |
| ! | GTCATCATAAATCAATGTAA+CGG | - | chr3_2:32666128-32666147 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3_2:32666292-32666311 | None:intergenic | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3_2:32666370-32666389 | Msa0403150:CDS | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3_2:32666460-32666479 | Msa0403150:CDS | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3_2:32666461-32666480 | Msa0403150:CDS | 25.0% |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3_2:32665782-32665801 | Msa0403150:CDS | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3_2:32666178-32666197 | None:intergenic | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3_2:32666183-32666202 | Msa0403150:CDS | 30.0% | |
| ACTATACCTATGGAAAAAAC+TGG | + | chr3_2:32666244-32666263 | Msa0403150:CDS | 30.0% | |
| !!! | ATTTCTCCAGTTTTTTCCAT+AGG | - | chr3_2:32666253-32666272 | None:intergenic | 30.0% |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3_2:32666344-32666363 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3_2:32666345-32666364 | Msa0403150:CDS | 30.0% |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3_2:32666619-32666638 | Msa0403150:CDS | 30.0% | |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3_2:32665782-32665801 | Msa0403150:CDS | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3_2:32666178-32666197 | None:intergenic | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3_2:32666183-32666202 | Msa0403150:CDS | 30.0% | |
| ACTATACCTATGGAAAAAAC+TGG | + | chr3_2:32666244-32666263 | Msa0403150:CDS | 30.0% | |
| !!! | ATTTCTCCAGTTTTTTCCAT+AGG | - | chr3_2:32666253-32666272 | None:intergenic | 30.0% |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3_2:32666344-32666363 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3_2:32666345-32666364 | Msa0403150:CDS | 30.0% |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3_2:32666619-32666638 | Msa0403150:CDS | 30.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3_2:32665835-32665854 | Msa0403150:CDS | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3_2:32665836-32665855 | Msa0403150:CDS | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3_2:32665854-32665873 | Msa0403150:CDS | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3_2:32665855-32665874 | Msa0403150:CDS | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3_2:32665879-32665898 | Msa0403150:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3_2:32665982-32666001 | Msa0403150:CDS | 35.0% | |
| TACATATGCGGATATTCAAC+CGG | + | chr3_2:32666156-32666175 | Msa0403150:CDS | 35.0% | |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3_2:32666177-32666196 | Msa0403150:CDS | 35.0% |
| AGATCAACCTTCACCTTATA+AGG | - | chr3_2:32666193-32666212 | None:intergenic | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3_2:32666214-32666233 | Msa0403150:CDS | 35.0% |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3_2:32666277-32666296 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3_2:32666283-32666302 | None:intergenic | 35.0% | |
| AAGCCATACCTCATAATCAA+GGG | - | chr3_2:32666404-32666423 | None:intergenic | 35.0% | |
| TTGATCTTCCAATTACCTTC+AGG | + | chr3_2:32666494-32666513 | Msa0403150:CDS | 35.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3_2:32665835-32665854 | Msa0403150:CDS | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3_2:32665836-32665855 | Msa0403150:CDS | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3_2:32665854-32665873 | Msa0403150:CDS | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3_2:32665855-32665874 | Msa0403150:CDS | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3_2:32665879-32665898 | Msa0403150:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3_2:32665982-32666001 | Msa0403150:CDS | 35.0% | |
| TACATATGCGGATATTCAAC+CGG | + | chr3_2:32666156-32666175 | Msa0403150:CDS | 35.0% | |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3_2:32666177-32666196 | Msa0403150:CDS | 35.0% |
| AGATCAACCTTCACCTTATA+AGG | - | chr3_2:32666193-32666212 | None:intergenic | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3_2:32666214-32666233 | Msa0403150:CDS | 35.0% |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3_2:32666277-32666296 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3_2:32666283-32666302 | None:intergenic | 35.0% | |
| AAGCCATACCTCATAATCAA+GGG | - | chr3_2:32666404-32666423 | None:intergenic | 35.0% | |
| TTGATCTTCCAATTACCTTC+AGG | + | chr3_2:32666494-32666513 | Msa0403150:CDS | 35.0% | |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3_2:32665788-32665807 | None:intergenic | 40.0% |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3_2:32665796-32665815 | Msa0403150:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3_2:32665805-32665824 | Msa0403150:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3_2:32665811-32665830 | Msa0403150:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3_2:32665812-32665831 | Msa0403150:CDS | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3_2:32665856-32665875 | Msa0403150:CDS | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3_2:32665878-32665897 | Msa0403150:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3_2:32665884-32665903 | Msa0403150:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3_2:32665885-32665904 | Msa0403150:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3_2:32665907-32665926 | Msa0403150:CDS | 40.0% | |
| AACTATTTGGTTGAGAGCGA+TGG | + | chr3_2:32666028-32666047 | Msa0403150:CDS | 40.0% | |
| ACTATTTGGTTGAGAGCGAT+GGG | + | chr3_2:32666029-32666048 | Msa0403150:CDS | 40.0% | |
| ACATATGCGGATATTCAACC+GGG | + | chr3_2:32666157-32666176 | Msa0403150:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3_2:32666218-32666237 | Msa0403150:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3_2:32666229-32666248 | None:intergenic | 40.0% | |
| TGGAAGGATCACTATACCTA+TGG | + | chr3_2:32666234-32666253 | Msa0403150:CDS | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3_2:32666276-32666295 | None:intergenic | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3_2:32666393-32666412 | Msa0403150:CDS | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3_2:32666398-32666417 | Msa0403150:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3_2:32666405-32666424 | None:intergenic | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3_2:32666403-32666422 | Msa0403150:CDS | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3_2:32666547-32666566 | Msa0403150:CDS | 40.0% |
| GGTACAGGATACACTATGAA+AGG | + | chr3_2:32666562-32666581 | Msa0403150:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3_2:32666589-32666608 | Msa0403150:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3_2:32666622-32666641 | Msa0403150:CDS | 40.0% | |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3_2:32665788-32665807 | None:intergenic | 40.0% |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3_2:32665796-32665815 | Msa0403150:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3_2:32665805-32665824 | Msa0403150:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3_2:32665811-32665830 | Msa0403150:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3_2:32665812-32665831 | Msa0403150:CDS | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3_2:32665856-32665875 | Msa0403150:CDS | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3_2:32665878-32665897 | Msa0403150:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3_2:32665884-32665903 | Msa0403150:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3_2:32665885-32665904 | Msa0403150:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3_2:32665907-32665926 | Msa0403150:CDS | 40.0% | |
| AACTATTTGGTTGAGAGCGA+TGG | + | chr3_2:32666028-32666047 | Msa0403150:CDS | 40.0% | |
| ACTATTTGGTTGAGAGCGAT+GGG | + | chr3_2:32666029-32666048 | Msa0403150:CDS | 40.0% | |
| ACATATGCGGATATTCAACC+GGG | + | chr3_2:32666157-32666176 | Msa0403150:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3_2:32666218-32666237 | Msa0403150:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3_2:32666229-32666248 | None:intergenic | 40.0% | |
| TGGAAGGATCACTATACCTA+TGG | + | chr3_2:32666234-32666253 | Msa0403150:CDS | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3_2:32666276-32666295 | None:intergenic | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3_2:32666393-32666412 | Msa0403150:CDS | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3_2:32666398-32666417 | Msa0403150:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3_2:32666405-32666424 | None:intergenic | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3_2:32666403-32666422 | Msa0403150:CDS | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3_2:32666547-32666566 | Msa0403150:CDS | 40.0% |
| GGTACAGGATACACTATGAA+AGG | + | chr3_2:32666562-32666581 | Msa0403150:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3_2:32666589-32666608 | Msa0403150:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3_2:32666622-32666641 | Msa0403150:CDS | 40.0% | |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3_2:32665800-32665819 | Msa0403150:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3_2:32665868-32665887 | Msa0403150:CDS | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3_2:32665914-32665933 | None:intergenic | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3_2:32666004-32666023 | None:intergenic | 45.0% | |
| TCGGGTTTGATACCAGATTC+TGG | + | chr3_2:32666064-32666083 | Msa0403150:CDS | 45.0% | |
| ! | GCATGGATTGTACCAGAATC+TGG | - | chr3_2:32666079-32666098 | None:intergenic | 45.0% |
| TCTGGTACAATCCATGCACA+TGG | + | chr3_2:32666082-32666101 | Msa0403150:CDS | 45.0% | |
| TACAATCCATGCACATGGAG+AGG | + | chr3_2:32666087-32666106 | Msa0403150:CDS | 45.0% | |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3_2:32666413-32666432 | Msa0403150:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3_2:32666418-32666437 | Msa0403150:CDS | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3_2:32666421-32666440 | Msa0403150:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3_2:32666520-32666539 | None:intergenic | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3_2:32666521-32666540 | Msa0403150:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3_2:32666522-32666541 | Msa0403150:CDS | 45.0% |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3_2:32666541-32666560 | Msa0403150:CDS | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3_2:32666607-32666626 | None:intergenic | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3_2:32666608-32666627 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3_2:32666628-32666647 | None:intergenic | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3_2:32666648-32666667 | Msa0403150:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3_2:32666653-32666672 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3_2:32666654-32666673 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3_2:32666655-32666674 | Msa0403150:CDS | 45.0% | |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3_2:32666658-32666677 | Msa0403150:CDS | 45.0% | |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3_2:32665800-32665819 | Msa0403150:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3_2:32665868-32665887 | Msa0403150:CDS | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3_2:32665914-32665933 | None:intergenic | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3_2:32666004-32666023 | None:intergenic | 45.0% | |
| TCGGGTTTGATACCAGATTC+TGG | + | chr3_2:32666064-32666083 | Msa0403150:CDS | 45.0% | |
| ! | GCATGGATTGTACCAGAATC+TGG | - | chr3_2:32666079-32666098 | None:intergenic | 45.0% |
| TCTGGTACAATCCATGCACA+TGG | + | chr3_2:32666082-32666101 | Msa0403150:CDS | 45.0% | |
| TACAATCCATGCACATGGAG+AGG | + | chr3_2:32666087-32666106 | Msa0403150:CDS | 45.0% | |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3_2:32666413-32666432 | Msa0403150:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3_2:32666418-32666437 | Msa0403150:CDS | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3_2:32666421-32666440 | Msa0403150:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3_2:32666520-32666539 | None:intergenic | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3_2:32666521-32666540 | Msa0403150:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3_2:32666522-32666541 | Msa0403150:CDS | 45.0% |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3_2:32666541-32666560 | Msa0403150:CDS | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3_2:32666607-32666626 | None:intergenic | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3_2:32666608-32666627 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3_2:32666628-32666647 | None:intergenic | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3_2:32666648-32666667 | Msa0403150:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3_2:32666653-32666672 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3_2:32666654-32666673 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3_2:32666655-32666674 | Msa0403150:CDS | 45.0% | |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3_2:32666658-32666677 | Msa0403150:CDS | 45.0% | |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3_2:32665815-32665834 | Msa0403150:CDS | 50.0% | |
| ATTTGGTTGAGAGCGATGGG+AGG | + | chr3_2:32666032-32666051 | Msa0403150:CDS | 50.0% | |
| ! | CGATGGGAGGAAGCTAGTTT+CGG | + | chr3_2:32666045-32666064 | Msa0403150:CDS | 50.0% |
| ! | GATGGGAGGAAGCTAGTTTC+GGG | + | chr3_2:32666046-32666065 | Msa0403150:CDS | 50.0% |
| CCATGCACATGGAGAGGAAA+CGG | + | chr3_2:32666093-32666112 | Msa0403150:CDS | 50.0% | |
| TCCAATTACCTTCAGGCCGA+AGG | + | chr3_2:32666501-32666520 | Msa0403150:CDS | 50.0% | |
| TCCTTCGGCCTGAAGGTAAT+TGG | - | chr3_2:32666505-32666524 | None:intergenic | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3_2:32666508-32666527 | Msa0403150:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3_2:32666509-32666528 | Msa0403150:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3_2:32666535-32666554 | Msa0403150:CDS | 50.0% |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3_2:32666651-32666670 | Msa0403150:CDS | 50.0% | |
| !! | GGATGGTGGAGATGATGATG+AGG | + | chr3_2:32666672-32666691 | Msa0403150:CDS | 50.0% |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3_2:32665815-32665834 | Msa0403150:CDS | 50.0% | |
| ATTTGGTTGAGAGCGATGGG+AGG | + | chr3_2:32666032-32666051 | Msa0403150:CDS | 50.0% | |
| ! | CGATGGGAGGAAGCTAGTTT+CGG | + | chr3_2:32666045-32666064 | Msa0403150:CDS | 50.0% |
| ! | GATGGGAGGAAGCTAGTTTC+GGG | + | chr3_2:32666046-32666065 | Msa0403150:CDS | 50.0% |
| CCATGCACATGGAGAGGAAA+CGG | + | chr3_2:32666093-32666112 | Msa0403150:CDS | 50.0% | |
| TCCAATTACCTTCAGGCCGA+AGG | + | chr3_2:32666501-32666520 | Msa0403150:CDS | 50.0% | |
| TCCTTCGGCCTGAAGGTAAT+TGG | - | chr3_2:32666505-32666524 | None:intergenic | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3_2:32666508-32666527 | Msa0403150:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3_2:32666509-32666528 | Msa0403150:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3_2:32666535-32666554 | Msa0403150:CDS | 50.0% |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3_2:32666651-32666670 | Msa0403150:CDS | 50.0% | |
| !! | GGATGGTGGAGATGATGATG+AGG | + | chr3_2:32666672-32666691 | Msa0403150:CDS | 50.0% |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3_2:32665998-32666017 | None:intergenic | 55.0% |
| CCGTTTCCTCTCCATGTGCA+TGG | - | chr3_2:32666096-32666115 | None:intergenic | 55.0% | |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3_2:32666512-32666531 | None:intergenic | 55.0% | |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3_2:32665998-32666017 | None:intergenic | 55.0% |
| CCGTTTCCTCTCCATGTGCA+TGG | - | chr3_2:32666096-32666115 | None:intergenic | 55.0% | |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3_2:32666512-32666531 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 32665767 | 32666702 | 32665767 | ID=Msa0403150;Name=Msa0403150 |
| chr3_2 | mRNA | 32665767 | 32666702 | 32665767 | ID=Msa0403150-mRNA-1;Parent=Msa0403150;Name=Msa0403150-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr3_2 | exon | 32665767 | 32666702 | 32665767 | ID=Msa0403150-mRNA-1:exon:6443;Parent=Msa0403150-mRNA-1 |
| chr3_2 | CDS | 32665767 | 32666702 | 32665767 | ID=Msa0403150-mRNA-1:cds;Parent=Msa0403150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
