AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449760 MtrunA17_Chr3g0093721 96.129 310 12 0 1 310 1 310 0.0 590
Msa0449760 MtrunA17_Chr5g0441301 78.846 312 55 3 1 301 1 312 1.05e-169 473
Msa0449760 MtrunA17_Chr8g0348171 31.081 148 96 2 25 172 4 145 6.21e-21 87.4
Msa0449760 MtrunA17_Chr7g0248741 27.027 148 102 1 25 172 3 144 3.85e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449760 AT2G44060.2 71.698 318 69 3 1 299 1 316 2.57e-159 447
Msa0449760 AT2G44060.1 71.698 318 69 3 1 299 1 316 2.57e-159 447
Msa0449760 AT2G46140.1 29.878 164 105 2 13 172 3 160 4.05e-17 77.8
Msa0449760 AT1G01470.1 28.667 150 101 1 23 172 2 145 6.44e-17 77.0

Find 90 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATTGATATTAACTATT+TGG 0.135397 3_3:-34472750 Msa0449760:CDS
ACCTTCAGGCCGAAGGATTT+TGG 0.160524 3_3:-34472257 Msa0449760:CDS
CCAAATAGTTAATATCAATT+AGG 0.192476 3_3:+34472750 None:intergenic
CAAATAGTTAATATCAATTA+GGG 0.255310 3_3:+34472751 None:intergenic
GTACCGCCTTCTTTGCTAAT+AGG 0.281765 3_3:+34472140 None:intergenic
AGATCAACCTTCACCTTATA+AGG 0.293664 3_3:+34472575 None:intergenic
GGGAAGTATCATTCCTTATA+AGG 0.326085 3_3:-34472588 Msa0449760:CDS
AGGGGAATCGGTACCGGATT+CGG 0.326651 3_3:+34472770 None:intergenic
TTGAGGAAACAGTTGGGTTT+GGG 0.329702 3_3:-34472880 Msa0449760:CDS
CGATGGGAGGAAGCTAGTTT+CGG 0.342864 3_3:-34472720 Msa0449760:CDS
TCGGGTTTGATACCGGATTC+TGG 0.343130 3_3:-34472701 Msa0449760:CDS
ATTGAGGAAACAGTTGGGTT+TGG 0.356214 3_3:-34472881 Msa0449760:CDS
GATGGGAGGAAGCTAGTTTC+GGG 0.364581 3_3:-34472719 Msa0449760:CDS
AGGGTTTCATTCAAGACATT+GGG 0.374827 3_3:-34472910 Msa0449760:CDS
TACATATGCTGATATTCAAC+CGG 0.384028 3_3:-34472609 Msa0449760:CDS
TCATCATAAATCAAAGTAAC+AGG 0.388586 3_3:+34472641 None:intergenic
GAAACCAACTGCAGATGTTT+CGG 0.390895 3_3:-34472858 Msa0449760:CDS
ATAGTTGATGTTCCTGTGAT+TGG 0.392201 3_3:-34472551 Msa0449760:CDS
ATTGATGTTGACACACCCTT+TGG 0.403399 3_3:-34472176 Msa0449760:CDS
TTGATCTTCCAATCACCTTC+AGG 0.405514 3_3:-34472271 Msa0449760:CDS
ATATCAGGCTTGTATGGAAT+CGG 0.407998 3_3:+34472491 None:intergenic
TAAACCAGAAATAGTGAAAA+GGG 0.409076 3_3:-34472984 Msa0449760:CDS
TTATAAGGAATGATACTTCC+CGG 0.412721 3_3:+34472590 None:intergenic
ACAAAAGGAAGGTGAGGAAA+AGG 0.421788 3_3:-34472954 Msa0449760:CDS
AGATCAATATCAGGCTTGTA+TGG 0.422032 3_3:+34472485 None:intergenic
TGCTATTCTTCATTTGAAGT+TGG 0.426339 3_3:-34472420 Msa0449760:CDS
ACTCAATGCCCTTGATTATG+AGG 0.431327 3_3:-34472372 Msa0449760:CDS
TCCTTCGGCCTGAAGGTGAT+TGG 0.431595 3_3:+34472263 None:intergenic
CCCAAAATCCTTCGGCCTGA+AGG 0.452825 3_3:+34472256 None:intergenic
TTAATATCAATTAGGGGAAT+CGG 0.452858 3_3:+34472758 None:intergenic
ATAAACCAGAAATAGTGAAA+AGG 0.464547 3_3:-34472985 Msa0449760:CDS
GAAAAGGGGTGAAGAACAAA+AGG 0.467028 3_3:-34472969 Msa0449760:CDS
CCGTTTCCTCTCCATGTGCA+TGG 0.475213 3_3:+34472672 None:intergenic
GCTAGTTTCGGGTTTGATAC+CGG 0.478481 3_3:-34472708 Msa0449760:CDS
AACTATTTGGTTGAGAGCGA+TGG 0.481277 3_3:-34472737 Msa0449760:CDS
CAAAAGGAAGGTGAGGAAAA+GGG 0.483494 3_3:-34472953 Msa0449760:CDS
AAGGGTTTCATTCAAGACAT+TGG 0.489962 3_3:-34472911 Msa0449760:CDS
AGACATTGGGGAGAAGATTG+AGG 0.492962 3_3:-34472897 Msa0449760:CDS
TGGAAGGATCACTATACCTA+TGG 0.493367 3_3:-34472531 Msa0449760:CDS
GAGAAGATTGAGGAAACAGT+TGG 0.495120 3_3:-34472887 Msa0449760:CDS
CTCCTTACTCTTCTTGAGAC+GGG 0.498996 3_3:+34472115 None:intergenic
TATCAGGCTTGTATGGAATC+GGG 0.508761 3_3:+34472492 None:intergenic
TGGCTTGGTGATGATAGGAT+TGG 0.510174 3_3:-34472347 Msa0449760:CDS
TCTCATAAAGAATCCGAATC+CGG 0.510443 3_3:-34472783 Msa0449760:CDS
TGGGACATGATGAGAGGAAA+AGG 0.514116 3_3:-34472224 Msa0449760:CDS
TCCAATCACCTTCAGGCCGA+AGG 0.514304 3_3:-34472264 Msa0449760:CDS
GGCAATTTCATCGCTCCAAA+GGG 0.514585 3_3:+34472161 None:intergenic
AGAAGATTGAGGAAACAGTT+GGG 0.514812 3_3:-34472886 Msa0449760:CDS
ATGCCCTTGATTATGAGGTA+TGG 0.514840 3_3:-34472367 Msa0449760:CDS
GCATGGATTGTACCAGAATC+CGG 0.515418 3_3:+34472689 None:intergenic
GAAGGTGATTGGAAGATCAA+TGG 0.521850 3_3:+34472274 None:intergenic
ACTATTTGGTTGAGAGCGAT+GGG 0.525582 3_3:-34472736 Msa0449760:CDS
CCATGCACATGGAGAGGAAA+CGG 0.527270 3_3:-34472672 Msa0449760:CDS
CCTCCTTACTCTTCTTGAGA+CGG 0.529375 3_3:+34472114 None:intergenic
TCAATTAGGGGAATCGGTAC+CGG 0.529894 3_3:+34472764 None:intergenic
AGGTATGGCTTGGTGATGAT+AGG 0.530326 3_3:-34472352 Msa0449760:CDS
GGATTTCTCAATACAGTGAA+GGG 0.538251 3_3:-34472929 Msa0449760:CDS
AAATTGCCTATTAGCAAAGA+AGG 0.540155 3_3:-34472146 Msa0449760:CDS
CTTGATTATGAGGTATGGCT+TGG 0.543545 3_3:-34472362 Msa0449760:CDS
ATGATGAGAGGAAAAGGTAC+AGG 0.545961 3_3:-34472218 Msa0449760:CDS
TATCATTCCTTATAAGGTGA+AGG 0.548759 3_3:-34472582 Msa0449760:CDS
CAAGCCATACCTCATAATCA+AGG 0.553144 3_3:+34472363 None:intergenic
AGTGCTGACCCAAAATCCTT+CGG 0.556973 3_3:+34472248 None:intergenic
TACCCGTCTCAAGAAGAGTA+AGG 0.565557 3_3:-34472117 Msa0449760:CDS
GGTACAGGATACACTATGAA+AGG 0.566561 3_3:-34472203 Msa0449760:CDS
AGGCAATTTCATCGCTCCAA+AGG 0.571299 3_3:+34472160 None:intergenic
TGGATTTCTCAATACAGTGA+AGG 0.575361 3_3:-34472930 Msa0449760:CDS
ATAGTGATCCTTCCAATCAC+AGG 0.589173 3_3:+34472539 None:intergenic
CTTGGTGATGATAGGATTGG+AGG 0.590333 3_3:-34472344 Msa0449760:CDS
ATCTCCGAAACATCTGCAGT+TGG 0.593488 3_3:+34472854 None:intergenic
AGGGGTGAAGAACAAAAGGA+AGG 0.598618 3_3:-34472965 Msa0449760:CDS
TACAATCCATGCACATGGAG+AGG 0.614846 3_3:-34472678 Msa0449760:CDS
ACATATGCTGATATTCAACC+GGG 0.617088 3_3:-34472608 Msa0449760:CDS
GGGTTTCATTCAAGACATTG+GGG 0.618306 3_3:-34472909 Msa0449760:CDS
TTGATGTTCCTGTGATTGGA+AGG 0.620198 3_3:-34472547 Msa0449760:CDS
AAGGAAGGTGAGGAAAAGGG+TGG 0.625777 3_3:-34472950 Msa0449760:CDS
AAGAAGAGTAAGGAGGATGG+TGG 0.626714 3_3:-34472107 Msa0449760:CDS
AAGCCATACCTCATAATCAA+GGG 0.628460 3_3:+34472364 None:intergenic
TGAAGAACAAAAGGAAGGTG+AGG 0.629320 3_3:-34472960 Msa0449760:CDS
CTCAAGAAGAGTAAGGAGGA+TGG 0.634584 3_3:-34472110 Msa0449760:CDS
TGGTGGAGATGATGATGATG+AGG 0.644185 3_3:-34472090 Msa0449760:CDS
CTTCAAATGAAGAATAGCAA+CGG 0.645167 3_3:+34472424 None:intergenic
GCACTTTGGGACATGATGAG+AGG 0.649658 3_3:-34472230 Msa0449760:CDS
CTATGTAGAGATGTCGACAT+CGG 0.653141 3_3:-34473008 None:intergenic
TCTGGTACAATCCATGCACA+TGG 0.653759 3_3:-34472683 Msa0449760:CDS
AAACCAGAAATAGTGAAAAG+GGG 0.654731 3_3:-34472983 Msa0449760:CDS
CCGTCTCAAGAAGAGTAAGG+AGG 0.673482 3_3:-34472114 Msa0449760:CDS
ATTTGGTTGAGAGCGATGGG+AGG 0.702091 3_3:-34472733 Msa0449760:CDS
AAATAGTTAATATCAATTAG+GGG 0.704056 3_3:+34472752 None:intergenic
TTGCCTATTAGCAAAGAAGG+CGG 0.725605 3_3:-34472143 Msa0449760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGTTAATATCAATTAG+GGG + chr3_3:34472334-34472353 None:intergenic 15.0%
!! CAAATAGTTAATATCAATTA+GGG + chr3_3:34472335-34472354 None:intergenic 15.0%
!! AAATAGTTAATATCAATTAG+GGG + chr3_3:34472334-34472353 None:intergenic 15.0%
!! CAAATAGTTAATATCAATTA+GGG + chr3_3:34472335-34472354 None:intergenic 15.0%
!! CCAAATAGTTAATATCAATT+AGG + chr3_3:34472336-34472355 None:intergenic 20.0%
!! CCTAATTGATATTAACTATT+TGG - chr3_3:34472333-34472352 Msa0449760:CDS 20.0%
!! CCAAATAGTTAATATCAATT+AGG + chr3_3:34472336-34472355 None:intergenic 20.0%
!! CCTAATTGATATTAACTATT+TGG - chr3_3:34472333-34472352 Msa0449760:CDS 20.0%
! ATAAACCAGAAATAGTGAAA+AGG - chr3_3:34472098-34472117 Msa0449760:CDS 25.0%
! TAAACCAGAAATAGTGAAAA+GGG - chr3_3:34472099-34472118 Msa0449760:CDS 25.0%
!! GCTTTGTCAAGATTAATTTT+AGG + chr3_3:34472262-34472281 None:intergenic 25.0%
! TTAATATCAATTAGGGGAAT+CGG + chr3_3:34472328-34472347 None:intergenic 25.0%
! TCATCATAAATCAAAGTAAC+AGG + chr3_3:34472445-34472464 None:intergenic 25.0%
!! ATTTTCTCAAGATCAATATC+AGG + chr3_3:34472610-34472629 None:intergenic 25.0%
!!! AACAAGAATGATTTTGACTT+AGG - chr3_3:34472688-34472707 Msa0449760:CDS 25.0%
! TCTGCAAAAATTGAAAAATG+TGG - chr3_3:34472778-34472797 Msa0449760:CDS 25.0%
! CTGCAAAAATTGAAAAATGT+GGG - chr3_3:34472779-34472798 Msa0449760:CDS 25.0%
! ATAAACCAGAAATAGTGAAA+AGG - chr3_3:34472098-34472117 Msa0449760:CDS 25.0%
! TAAACCAGAAATAGTGAAAA+GGG - chr3_3:34472099-34472118 Msa0449760:CDS 25.0%
!! GCTTTGTCAAGATTAATTTT+AGG + chr3_3:34472262-34472281 None:intergenic 25.0%
! TTAATATCAATTAGGGGAAT+CGG + chr3_3:34472328-34472347 None:intergenic 25.0%
! TCATCATAAATCAAAGTAAC+AGG + chr3_3:34472445-34472464 None:intergenic 25.0%
!! ATTTTCTCAAGATCAATATC+AGG + chr3_3:34472610-34472629 None:intergenic 25.0%
!!! AACAAGAATGATTTTGACTT+AGG - chr3_3:34472688-34472707 Msa0449760:CDS 25.0%
! TCTGCAAAAATTGAAAAATG+TGG - chr3_3:34472778-34472797 Msa0449760:CDS 25.0%
! CTGCAAAAATTGAAAAATGT+GGG - chr3_3:34472779-34472798 Msa0449760:CDS 25.0%
AAACCAGAAATAGTGAAAAG+GGG - chr3_3:34472100-34472119 Msa0449760:CDS 30.0%
TACATATGCTGATATTCAAC+CGG - chr3_3:34472474-34472493 Msa0449760:CDS 30.0%
TTATAAGGAATGATACTTCC+CGG + chr3_3:34472496-34472515 None:intergenic 30.0%
TATCATTCCTTATAAGGTGA+AGG - chr3_3:34472501-34472520 Msa0449760:CDS 30.0%
ACTATACCTATGGAAAAAAC+TGG - chr3_3:34472562-34472581 Msa0449760:CDS 30.0%
!!! ATTTCTCCAGTTTTTTCCAT+AGG + chr3_3:34472571-34472590 None:intergenic 30.0%
CTTCAAATGAAGAATAGCAA+CGG + chr3_3:34472662-34472681 None:intergenic 30.0%
! TGCTATTCTTCATTTGAAGT+TGG - chr3_3:34472663-34472682 Msa0449760:CDS 30.0%
AAATTGCCTATTAGCAAAGA+AGG - chr3_3:34472937-34472956 Msa0449760:CDS 30.0%
AAACCAGAAATAGTGAAAAG+GGG - chr3_3:34472100-34472119 Msa0449760:CDS 30.0%
TACATATGCTGATATTCAAC+CGG - chr3_3:34472474-34472493 Msa0449760:CDS 30.0%
TTATAAGGAATGATACTTCC+CGG + chr3_3:34472496-34472515 None:intergenic 30.0%
TATCATTCCTTATAAGGTGA+AGG - chr3_3:34472501-34472520 Msa0449760:CDS 30.0%
ACTATACCTATGGAAAAAAC+TGG - chr3_3:34472562-34472581 Msa0449760:CDS 30.0%
!!! ATTTCTCCAGTTTTTTCCAT+AGG + chr3_3:34472571-34472590 None:intergenic 30.0%
CTTCAAATGAAGAATAGCAA+CGG + chr3_3:34472662-34472681 None:intergenic 30.0%
! TGCTATTCTTCATTTGAAGT+TGG - chr3_3:34472663-34472682 Msa0449760:CDS 30.0%
AAATTGCCTATTAGCAAAGA+AGG - chr3_3:34472937-34472956 Msa0449760:CDS 30.0%
TGGATTTCTCAATACAGTGA+AGG - chr3_3:34472153-34472172 Msa0449760:CDS 35.0%
GGATTTCTCAATACAGTGAA+GGG - chr3_3:34472154-34472173 Msa0449760:CDS 35.0%
AAGGGTTTCATTCAAGACAT+TGG - chr3_3:34472172-34472191 Msa0449760:CDS 35.0%
AGGGTTTCATTCAAGACATT+GGG - chr3_3:34472173-34472192 Msa0449760:CDS 35.0%
AGAAGATTGAGGAAACAGTT+GGG - chr3_3:34472197-34472216 Msa0449760:CDS 35.0%
TCTCATAAAGAATCCGAATC+CGG - chr3_3:34472300-34472319 Msa0449760:CDS 35.0%
ACATATGCTGATATTCAACC+GGG - chr3_3:34472475-34472494 Msa0449760:CDS 35.0%
!! GGGAAGTATCATTCCTTATA+AGG - chr3_3:34472495-34472514 Msa0449760:CDS 35.0%
AGATCAACCTTCACCTTATA+AGG + chr3_3:34472511-34472530 None:intergenic 35.0%
! ATAGTTGATGTTCCTGTGAT+TGG - chr3_3:34472532-34472551 Msa0449760:CDS 35.0%
ATATCAGGCTTGTATGGAAT+CGG + chr3_3:34472595-34472614 None:intergenic 35.0%
AGATCAATATCAGGCTTGTA+TGG + chr3_3:34472601-34472620 None:intergenic 35.0%
AAGCCATACCTCATAATCAA+GGG + chr3_3:34472722-34472741 None:intergenic 35.0%
TGGATTTCTCAATACAGTGA+AGG - chr3_3:34472153-34472172 Msa0449760:CDS 35.0%
GGATTTCTCAATACAGTGAA+GGG - chr3_3:34472154-34472173 Msa0449760:CDS 35.0%
AAGGGTTTCATTCAAGACAT+TGG - chr3_3:34472172-34472191 Msa0449760:CDS 35.0%
AGGGTTTCATTCAAGACATT+GGG - chr3_3:34472173-34472192 Msa0449760:CDS 35.0%
AGAAGATTGAGGAAACAGTT+GGG - chr3_3:34472197-34472216 Msa0449760:CDS 35.0%
TCTCATAAAGAATCCGAATC+CGG - chr3_3:34472300-34472319 Msa0449760:CDS 35.0%
ACATATGCTGATATTCAACC+GGG - chr3_3:34472475-34472494 Msa0449760:CDS 35.0%
!! GGGAAGTATCATTCCTTATA+AGG - chr3_3:34472495-34472514 Msa0449760:CDS 35.0%
AGATCAACCTTCACCTTATA+AGG + chr3_3:34472511-34472530 None:intergenic 35.0%
! ATAGTTGATGTTCCTGTGAT+TGG - chr3_3:34472532-34472551 Msa0449760:CDS 35.0%
ATATCAGGCTTGTATGGAAT+CGG + chr3_3:34472595-34472614 None:intergenic 35.0%
AGATCAATATCAGGCTTGTA+TGG + chr3_3:34472601-34472620 None:intergenic 35.0%
AAGCCATACCTCATAATCAA+GGG + chr3_3:34472722-34472741 None:intergenic 35.0%
! TCACCCCTTTTCACTATTTC+TGG + chr3_3:34472106-34472125 None:intergenic 40.0%
GAAAAGGGGTGAAGAACAAA+AGG - chr3_3:34472114-34472133 Msa0449760:CDS 40.0%
TGAAGAACAAAAGGAAGGTG+AGG - chr3_3:34472123-34472142 Msa0449760:CDS 40.0%
ACAAAAGGAAGGTGAGGAAA+AGG - chr3_3:34472129-34472148 Msa0449760:CDS 40.0%
CAAAAGGAAGGTGAGGAAAA+GGG - chr3_3:34472130-34472149 Msa0449760:CDS 40.0%
GGGTTTCATTCAAGACATTG+GGG - chr3_3:34472174-34472193 Msa0449760:CDS 40.0%
GAGAAGATTGAGGAAACAGT+TGG - chr3_3:34472196-34472215 Msa0449760:CDS 40.0%
ATTGAGGAAACAGTTGGGTT+TGG - chr3_3:34472202-34472221 Msa0449760:CDS 40.0%
TTGAGGAAACAGTTGGGTTT+GGG - chr3_3:34472203-34472222 Msa0449760:CDS 40.0%
GAAACCAACTGCAGATGTTT+CGG - chr3_3:34472225-34472244 Msa0449760:CDS 40.0%
AACTATTTGGTTGAGAGCGA+TGG - chr3_3:34472346-34472365 Msa0449760:CDS 40.0%
ACTATTTGGTTGAGAGCGAT+GGG - chr3_3:34472347-34472366 Msa0449760:CDS 40.0%
TTGATGTTCCTGTGATTGGA+AGG - chr3_3:34472536-34472555 Msa0449760:CDS 40.0%
ATAGTGATCCTTCCAATCAC+AGG + chr3_3:34472547-34472566 None:intergenic 40.0%
TGGAAGGATCACTATACCTA+TGG - chr3_3:34472552-34472571 Msa0449760:CDS 40.0%
TATCAGGCTTGTATGGAATC+GGG + chr3_3:34472594-34472613 None:intergenic 40.0%
ACTCAATGCCCTTGATTATG+AGG - chr3_3:34472711-34472730 Msa0449760:CDS 40.0%
ATGCCCTTGATTATGAGGTA+TGG - chr3_3:34472716-34472735 Msa0449760:CDS 40.0%
CAAGCCATACCTCATAATCA+AGG + chr3_3:34472723-34472742 None:intergenic 40.0%
CTTGATTATGAGGTATGGCT+TGG - chr3_3:34472721-34472740 Msa0449760:CDS 40.0%
GAAGGTGATTGGAAGATCAA+TGG + chr3_3:34472812-34472831 None:intergenic 40.0%
TTGATCTTCCAATCACCTTC+AGG - chr3_3:34472812-34472831 Msa0449760:CDS 40.0%
! ATGATGAGAGGAAAAGGTAC+AGG - chr3_3:34472865-34472884 Msa0449760:CDS 40.0%
GGTACAGGATACACTATGAA+AGG - chr3_3:34472880-34472899 Msa0449760:CDS 40.0%
ATTGATGTTGACACACCCTT+TGG - chr3_3:34472907-34472926 Msa0449760:CDS 40.0%
TTGCCTATTAGCAAAGAAGG+CGG - chr3_3:34472940-34472959 Msa0449760:CDS 40.0%
! TCACCCCTTTTCACTATTTC+TGG + chr3_3:34472106-34472125 None:intergenic 40.0%
GAAAAGGGGTGAAGAACAAA+AGG - chr3_3:34472114-34472133 Msa0449760:CDS 40.0%
TGAAGAACAAAAGGAAGGTG+AGG - chr3_3:34472123-34472142 Msa0449760:CDS 40.0%
ACAAAAGGAAGGTGAGGAAA+AGG - chr3_3:34472129-34472148 Msa0449760:CDS 40.0%
CAAAAGGAAGGTGAGGAAAA+GGG - chr3_3:34472130-34472149 Msa0449760:CDS 40.0%
GGGTTTCATTCAAGACATTG+GGG - chr3_3:34472174-34472193 Msa0449760:CDS 40.0%
GAGAAGATTGAGGAAACAGT+TGG - chr3_3:34472196-34472215 Msa0449760:CDS 40.0%
ATTGAGGAAACAGTTGGGTT+TGG - chr3_3:34472202-34472221 Msa0449760:CDS 40.0%
TTGAGGAAACAGTTGGGTTT+GGG - chr3_3:34472203-34472222 Msa0449760:CDS 40.0%
GAAACCAACTGCAGATGTTT+CGG - chr3_3:34472225-34472244 Msa0449760:CDS 40.0%
AACTATTTGGTTGAGAGCGA+TGG - chr3_3:34472346-34472365 Msa0449760:CDS 40.0%
ACTATTTGGTTGAGAGCGAT+GGG - chr3_3:34472347-34472366 Msa0449760:CDS 40.0%
TTGATGTTCCTGTGATTGGA+AGG - chr3_3:34472536-34472555 Msa0449760:CDS 40.0%
ATAGTGATCCTTCCAATCAC+AGG + chr3_3:34472547-34472566 None:intergenic 40.0%
TGGAAGGATCACTATACCTA+TGG - chr3_3:34472552-34472571 Msa0449760:CDS 40.0%
TATCAGGCTTGTATGGAATC+GGG + chr3_3:34472594-34472613 None:intergenic 40.0%
ACTCAATGCCCTTGATTATG+AGG - chr3_3:34472711-34472730 Msa0449760:CDS 40.0%
ATGCCCTTGATTATGAGGTA+TGG - chr3_3:34472716-34472735 Msa0449760:CDS 40.0%
CAAGCCATACCTCATAATCA+AGG + chr3_3:34472723-34472742 None:intergenic 40.0%
CTTGATTATGAGGTATGGCT+TGG - chr3_3:34472721-34472740 Msa0449760:CDS 40.0%
GAAGGTGATTGGAAGATCAA+TGG + chr3_3:34472812-34472831 None:intergenic 40.0%
TTGATCTTCCAATCACCTTC+AGG - chr3_3:34472812-34472831 Msa0449760:CDS 40.0%
! ATGATGAGAGGAAAAGGTAC+AGG - chr3_3:34472865-34472884 Msa0449760:CDS 40.0%
GGTACAGGATACACTATGAA+AGG - chr3_3:34472880-34472899 Msa0449760:CDS 40.0%
ATTGATGTTGACACACCCTT+TGG - chr3_3:34472907-34472926 Msa0449760:CDS 40.0%
TTGCCTATTAGCAAAGAAGG+CGG - chr3_3:34472940-34472959 Msa0449760:CDS 40.0%
AGGGGTGAAGAACAAAAGGA+AGG - chr3_3:34472118-34472137 Msa0449760:CDS 45.0%
AGACATTGGGGAGAAGATTG+AGG - chr3_3:34472186-34472205 Msa0449760:CDS 45.0%
ATCTCCGAAACATCTGCAGT+TGG + chr3_3:34472232-34472251 None:intergenic 45.0%
TCAATTAGGGGAATCGGTAC+CGG + chr3_3:34472322-34472341 None:intergenic 45.0%
!! GCTAGTTTCGGGTTTGATAC+CGG - chr3_3:34472375-34472394 Msa0449760:CDS 45.0%
! GCATGGATTGTACCAGAATC+CGG + chr3_3:34472397-34472416 None:intergenic 45.0%
TCTGGTACAATCCATGCACA+TGG - chr3_3:34472400-34472419 Msa0449760:CDS 45.0%
TACAATCCATGCACATGGAG+AGG - chr3_3:34472405-34472424 Msa0449760:CDS 45.0%
!! AGGTATGGCTTGGTGATGAT+AGG - chr3_3:34472731-34472750 Msa0449760:CDS 45.0%
!! TGGCTTGGTGATGATAGGAT+TGG - chr3_3:34472736-34472755 Msa0449760:CDS 45.0%
!! CTTGGTGATGATAGGATTGG+AGG - chr3_3:34472739-34472758 Msa0449760:CDS 45.0%
!! AGTGCTGACCCAAAATCCTT+CGG + chr3_3:34472838-34472857 None:intergenic 45.0%
!! AGGATTTTGGGTCAGCACTT+TGG - chr3_3:34472839-34472858 Msa0449760:CDS 45.0%
!! GGATTTTGGGTCAGCACTTT+GGG - chr3_3:34472840-34472859 Msa0449760:CDS 45.0%
TGGGACATGATGAGAGGAAA+AGG - chr3_3:34472859-34472878 Msa0449760:CDS 45.0%
GGCAATTTCATCGCTCCAAA+GGG + chr3_3:34472925-34472944 None:intergenic 45.0%
AGGCAATTTCATCGCTCCAA+AGG + chr3_3:34472926-34472945 None:intergenic 45.0%
GTACCGCCTTCTTTGCTAAT+AGG + chr3_3:34472946-34472965 None:intergenic 45.0%
TACCCGTCTCAAGAAGAGTA+AGG - chr3_3:34472966-34472985 Msa0449760:CDS 45.0%
CTCCTTACTCTTCTTGAGAC+GGG + chr3_3:34472971-34472990 None:intergenic 45.0%
CCTCCTTACTCTTCTTGAGA+CGG + chr3_3:34472972-34472991 None:intergenic 45.0%
CTCAAGAAGAGTAAGGAGGA+TGG - chr3_3:34472973-34472992 Msa0449760:CDS 45.0%
AAGAAGAGTAAGGAGGATGG+TGG - chr3_3:34472976-34472995 Msa0449760:CDS 45.0%
! TGGTGGAGATGATGATGATG+AGG - chr3_3:34472993-34473012 Msa0449760:CDS 45.0%
AGGGGTGAAGAACAAAAGGA+AGG - chr3_3:34472118-34472137 Msa0449760:CDS 45.0%
AGACATTGGGGAGAAGATTG+AGG - chr3_3:34472186-34472205 Msa0449760:CDS 45.0%
ATCTCCGAAACATCTGCAGT+TGG + chr3_3:34472232-34472251 None:intergenic 45.0%
TCAATTAGGGGAATCGGTAC+CGG + chr3_3:34472322-34472341 None:intergenic 45.0%
!! GCTAGTTTCGGGTTTGATAC+CGG - chr3_3:34472375-34472394 Msa0449760:CDS 45.0%
! GCATGGATTGTACCAGAATC+CGG + chr3_3:34472397-34472416 None:intergenic 45.0%
TCTGGTACAATCCATGCACA+TGG - chr3_3:34472400-34472419 Msa0449760:CDS 45.0%
TACAATCCATGCACATGGAG+AGG - chr3_3:34472405-34472424 Msa0449760:CDS 45.0%
!! AGGTATGGCTTGGTGATGAT+AGG - chr3_3:34472731-34472750 Msa0449760:CDS 45.0%
!! TGGCTTGGTGATGATAGGAT+TGG - chr3_3:34472736-34472755 Msa0449760:CDS 45.0%
!! CTTGGTGATGATAGGATTGG+AGG - chr3_3:34472739-34472758 Msa0449760:CDS 45.0%
!! AGTGCTGACCCAAAATCCTT+CGG + chr3_3:34472838-34472857 None:intergenic 45.0%
!! AGGATTTTGGGTCAGCACTT+TGG - chr3_3:34472839-34472858 Msa0449760:CDS 45.0%
!! GGATTTTGGGTCAGCACTTT+GGG - chr3_3:34472840-34472859 Msa0449760:CDS 45.0%
TGGGACATGATGAGAGGAAA+AGG - chr3_3:34472859-34472878 Msa0449760:CDS 45.0%
GGCAATTTCATCGCTCCAAA+GGG + chr3_3:34472925-34472944 None:intergenic 45.0%
AGGCAATTTCATCGCTCCAA+AGG + chr3_3:34472926-34472945 None:intergenic 45.0%
GTACCGCCTTCTTTGCTAAT+AGG + chr3_3:34472946-34472965 None:intergenic 45.0%
TACCCGTCTCAAGAAGAGTA+AGG - chr3_3:34472966-34472985 Msa0449760:CDS 45.0%
CTCCTTACTCTTCTTGAGAC+GGG + chr3_3:34472971-34472990 None:intergenic 45.0%
CCTCCTTACTCTTCTTGAGA+CGG + chr3_3:34472972-34472991 None:intergenic 45.0%
CTCAAGAAGAGTAAGGAGGA+TGG - chr3_3:34472973-34472992 Msa0449760:CDS 45.0%
AAGAAGAGTAAGGAGGATGG+TGG - chr3_3:34472976-34472995 Msa0449760:CDS 45.0%
! TGGTGGAGATGATGATGATG+AGG - chr3_3:34472993-34473012 Msa0449760:CDS 45.0%
AAGGAAGGTGAGGAAAAGGG+TGG - chr3_3:34472133-34472152 Msa0449760:CDS 50.0%
ATTTGGTTGAGAGCGATGGG+AGG - chr3_3:34472350-34472369 Msa0449760:CDS 50.0%
! CGATGGGAGGAAGCTAGTTT+CGG - chr3_3:34472363-34472382 Msa0449760:CDS 50.0%
! GATGGGAGGAAGCTAGTTTC+GGG - chr3_3:34472364-34472383 Msa0449760:CDS 50.0%
TCGGGTTTGATACCGGATTC+TGG - chr3_3:34472382-34472401 Msa0449760:CDS 50.0%
CCATGCACATGGAGAGGAAA+CGG - chr3_3:34472411-34472430 Msa0449760:CDS 50.0%
! ACCTTCAGGCCGAAGGATTT+TGG - chr3_3:34472826-34472845 Msa0449760:CDS 50.0%
! CCTTCAGGCCGAAGGATTTT+GGG - chr3_3:34472827-34472846 Msa0449760:CDS 50.0%
!! GCACTTTGGGACATGATGAG+AGG - chr3_3:34472853-34472872 Msa0449760:CDS 50.0%
CCGTCTCAAGAAGAGTAAGG+AGG - chr3_3:34472969-34472988 Msa0449760:CDS 50.0%
AAGGAAGGTGAGGAAAAGGG+TGG - chr3_3:34472133-34472152 Msa0449760:CDS 50.0%
ATTTGGTTGAGAGCGATGGG+AGG - chr3_3:34472350-34472369 Msa0449760:CDS 50.0%
! CGATGGGAGGAAGCTAGTTT+CGG - chr3_3:34472363-34472382 Msa0449760:CDS 50.0%
! GATGGGAGGAAGCTAGTTTC+GGG - chr3_3:34472364-34472383 Msa0449760:CDS 50.0%
TCGGGTTTGATACCGGATTC+TGG - chr3_3:34472382-34472401 Msa0449760:CDS 50.0%
CCATGCACATGGAGAGGAAA+CGG - chr3_3:34472411-34472430 Msa0449760:CDS 50.0%
! ACCTTCAGGCCGAAGGATTT+TGG - chr3_3:34472826-34472845 Msa0449760:CDS 50.0%
! CCTTCAGGCCGAAGGATTTT+GGG - chr3_3:34472827-34472846 Msa0449760:CDS 50.0%
!! GCACTTTGGGACATGATGAG+AGG - chr3_3:34472853-34472872 Msa0449760:CDS 50.0%
CCGTCTCAAGAAGAGTAAGG+AGG - chr3_3:34472969-34472988 Msa0449760:CDS 50.0%
! AGGGGAATCGGTACCGGATT+CGG + chr3_3:34472316-34472335 None:intergenic 55.0%
CCGTTTCCTCTCCATGTGCA+TGG + chr3_3:34472414-34472433 None:intergenic 55.0%
TCCAATCACCTTCAGGCCGA+AGG - chr3_3:34472819-34472838 Msa0449760:CDS 55.0%
TCCTTCGGCCTGAAGGTGAT+TGG + chr3_3:34472823-34472842 None:intergenic 55.0%
CCCAAAATCCTTCGGCCTGA+AGG + chr3_3:34472830-34472849 None:intergenic 55.0%
! AGGGGAATCGGTACCGGATT+CGG + chr3_3:34472316-34472335 None:intergenic 55.0%
CCGTTTCCTCTCCATGTGCA+TGG + chr3_3:34472414-34472433 None:intergenic 55.0%
TCCAATCACCTTCAGGCCGA+AGG - chr3_3:34472819-34472838 Msa0449760:CDS 55.0%
TCCTTCGGCCTGAAGGTGAT+TGG + chr3_3:34472823-34472842 None:intergenic 55.0%
CCCAAAATCCTTCGGCCTGA+AGG + chr3_3:34472830-34472849 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 34472085 34473020 34472085 ID=Msa0449760;Name=Msa0449760
chr3_3 mRNA 34472085 34473020 34472085 ID=Msa0449760-mRNA-1;Parent=Msa0449760;Name=Msa0449760-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|311
chr3_3 exon 34472085 34473020 34472085 ID=Msa0449760-mRNA-1:exon:6151;Parent=Msa0449760-mRNA-1
chr3_3 CDS 34472085 34473020 34472085 ID=Msa0449760-mRNA-1:cds;Parent=Msa0449760-mRNA-1
Gene Sequence

>Msa0449760

ATGTCGACATCGGATAAACCAGAAATAGTGAAAAGGGGTGAAGAACAAAAGGAAGGTGAGGAAAAGGGTGGATTTCTCAATACAGTGAAGGGTTTCATTCAAGACATTGGGGAGAAGATTGAGGAAACAGTTGGGTTTGGGAAACCAACTGCAGATGTTTCGGAGATACACATTCCTAAAATTAATCTTGACAAAGCAGATCTTGTTGTTGATATTCTCATAAAGAATCCGAATCCGGTACCGATTCCCCTAATTGATATTAACTATTTGGTTGAGAGCGATGGGAGGAAGCTAGTTTCGGGTTTGATACCGGATTCTGGTACAATCCATGCACATGGAGAGGAAACGGTAAAAATTCCTGTTACTTTGATTTATGATGACATAAAAAATACATATGCTGATATTCAACCGGGAAGTATCATTCCTTATAAGGTGAAGGTTGATCTCATAGTTGATGTTCCTGTGATTGGAAGGATCACTATACCTATGGAAAAAACTGGAGAAATCCCGATTCCATACAAGCCTGATATTGATCTTGAGAAAATTCAGTTTAAGAGTTTCTCTTTTGAAGAGACCGTTGCTATTCTTCATTTGAAGTTGGATAACAAGAATGATTTTGACTTAGGACTCAATGCCCTTGATTATGAGGTATGGCTTGGTGATGATAGGATTGGAGGTGCTGATCTTGCAAAGTCTGCAAAAATTGAAAAATGTGGGATTACTTCCATTGATCTTCCAATCACCTTCAGGCCGAAGGATTTTGGGTCAGCACTTTGGGACATGATGAGAGGAAAAGGTACAGGATACACTATGAAAGGACATATTGATGTTGACACACCCTTTGGAGCGATGAAATTGCCTATTAGCAAAGAAGGCGGTACTACCCGTCTCAAGAAGAGTAAGGAGGATGGTGGAGATGATGATGATGAGGTTTGA

Protein sequence

>Msa0449760

MSTSDKPEIVKRGEEQKEGEEKGGFLNTVKGFIQDIGEKIEETVGFGKPTADVSEIHIPKINLDKADLVVDILIKNPNPVPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNTYADIQPGSIIPYKVKVDLIVDVPVIGRITIPMEKTGEIPIPYKPDIDLEKIQFKSFSFEETVAILHLKLDNKNDFDLGLNALDYEVWLGDDRIGGADLAKSAKIEKCGITSIDLPITFRPKDFGSALWDMMRGKGTGYTMKGHIDVDTPFGAMKLPISKEGGTTRLKKSKEDGGDDDDEV*