Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404990 | QJU69413.1 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 8.27e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404990 | sp|A0A0P0X0C0|MPH1_ORYSJ | 61.905 | 63 | 24 | 0 | 7 | 69 | 5 | 67 | 3.71e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404990 | A0A6M5K8M6 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 3.95e-42 | 148 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0404990 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0404990 | Msa1270730 | 0.812099 | 5.028100e-51 | -8.615850e-47 |
| Msa0404990 | Msa1428780 | 0.805775 | 1.134419e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404990 | MtrunA17_Chr3g0095611 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 2.14e-45 | 147 |
| Msa0404990 | MtrunA17_Chr2g0288601 | 61.905 | 63 | 24 | 0 | 7 | 69 | 59 | 121 | 1.40e-23 | 89.0 |
| Msa0404990 | MtrunA17_Chr8g0379121 | 57.576 | 66 | 28 | 0 | 4 | 69 | 96 | 161 | 1.67e-22 | 91.7 |
| Msa0404990 | MtrunA17_Chr1g0162931 | 66.102 | 59 | 20 | 0 | 11 | 69 | 10 | 68 | 4.37e-22 | 89.0 |
| Msa0404990 | MtrunA17_Chr2g0283951 | 59.091 | 66 | 27 | 0 | 4 | 69 | 74 | 139 | 8.30e-22 | 89.4 |
| Msa0404990 | MtrunA17_Chr2g0320231 | 62.295 | 61 | 23 | 0 | 9 | 69 | 87 | 147 | 9.40e-22 | 89.4 |
| Msa0404990 | MtrunA17_Chr1g0210911 | 61.667 | 60 | 23 | 0 | 10 | 69 | 13 | 72 | 2.63e-21 | 87.8 |
| Msa0404990 | MtrunA17_Chr7g0243081 | 53.623 | 69 | 32 | 0 | 1 | 69 | 53 | 121 | 3.85e-21 | 87.4 |
| Msa0404990 | MtrunA17_Chr1g0190301 | 56.061 | 66 | 28 | 1 | 4 | 69 | 161 | 225 | 4.88e-19 | 82.0 |
| Msa0404990 | MtrunA17_Chr7g0274471 | 55.172 | 58 | 26 | 0 | 19 | 76 | 218 | 275 | 7.03e-18 | 79.0 |
| Msa0404990 | MtrunA17_Chr7g0261911 | 53.448 | 58 | 27 | 0 | 19 | 76 | 262 | 319 | 2.86e-17 | 77.4 |
| Msa0404990 | MtrunA17_Chr5g0417521 | 56.863 | 51 | 22 | 0 | 19 | 69 | 15 | 65 | 4.65e-17 | 76.3 |
| Msa0404990 | MtrunA17_Chr5g0409731 | 41.935 | 93 | 42 | 2 | 8 | 93 | 7 | 94 | 2.28e-16 | 73.9 |
| Msa0404990 | MtrunA17_Chr6g0461641 | 54.902 | 51 | 23 | 0 | 19 | 69 | 42 | 92 | 4.43e-16 | 73.6 |
| Msa0404990 | MtrunA17_Chr8g0356501 | 62.745 | 51 | 19 | 0 | 19 | 69 | 37 | 87 | 6.07e-16 | 73.2 |
| Msa0404990 | MtrunA17_Chr2g0310011 | 62.745 | 51 | 19 | 0 | 19 | 69 | 35 | 85 | 1.47e-15 | 72.0 |
| Msa0404990 | MtrunA17_Chr2g0321461 | 48.485 | 66 | 33 | 1 | 4 | 69 | 31 | 95 | 1.57e-15 | 72.0 |
| Msa0404990 | MtrunA17_Chr6g0479431 | 39.759 | 83 | 46 | 1 | 18 | 100 | 201 | 279 | 3.52e-15 | 70.9 |
| Msa0404990 | MtrunA17_Chr2g0291021 | 44.156 | 77 | 41 | 1 | 21 | 95 | 51 | 127 | 5.87e-15 | 70.1 |
| Msa0404990 | MtrunA17_Chr1g0197171 | 60.784 | 51 | 20 | 0 | 19 | 69 | 44 | 94 | 1.02e-14 | 69.3 |
| Msa0404990 | MtrunA17_Chr7g0258551 | 56.604 | 53 | 23 | 0 | 17 | 69 | 210 | 262 | 1.07e-14 | 69.7 |
| Msa0404990 | MtrunA17_Chr1g0175081 | 48.333 | 60 | 31 | 0 | 17 | 76 | 20 | 79 | 1.25e-14 | 65.5 |
| Msa0404990 | MtrunA17_Chr8g0366281 | 55.769 | 52 | 23 | 0 | 18 | 69 | 172 | 223 | 1.53e-14 | 69.3 |
| Msa0404990 | MtrunA17_Chr1g0154261 | 44.928 | 69 | 36 | 1 | 1 | 69 | 110 | 176 | 1.99e-14 | 68.6 |
| Msa0404990 | MtrunA17_Chr2g0290991 | 58.824 | 51 | 21 | 0 | 19 | 69 | 39 | 89 | 3.72e-14 | 67.8 |
| Msa0404990 | MtrunA17_Chr7g0254981 | 46.970 | 66 | 35 | 0 | 4 | 69 | 35 | 100 | 3.94e-14 | 67.4 |
| Msa0404990 | MtrunA17_Chr5g0410741 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 4.22e-14 | 68.2 |
| Msa0404990 | MtrunA17_Chr3g0109981 | 53.846 | 52 | 24 | 0 | 18 | 69 | 273 | 324 | 4.25e-14 | 68.2 |
| Msa0404990 | MtrunA17_Chr1g0175091 | 47.692 | 65 | 34 | 0 | 5 | 69 | 244 | 308 | 8.60e-14 | 67.4 |
| Msa0404990 | MtrunA17_Chr1g0175071 | 45.570 | 79 | 41 | 1 | 21 | 97 | 179 | 257 | 2.02e-13 | 65.9 |
| Msa0404990 | MtrunA17_Chr4g0042451 | 50.980 | 51 | 25 | 0 | 19 | 69 | 17 | 67 | 2.14e-13 | 65.9 |
| Msa0404990 | MtrunA17_Chr4g0009991 | 54.717 | 53 | 23 | 1 | 17 | 69 | 65 | 116 | 5.12e-13 | 61.6 |
| Msa0404990 | MtrunA17_Chr7g0242521 | 50.000 | 68 | 28 | 2 | 5 | 69 | 2 | 66 | 8.41e-13 | 63.5 |
| Msa0404990 | MtrunA17_Chr7g0258531 | 53.704 | 54 | 25 | 0 | 21 | 74 | 215 | 268 | 1.32e-12 | 63.5 |
| Msa0404990 | MtrunA17_Chr4g0009901 | 50.847 | 59 | 28 | 1 | 11 | 69 | 160 | 217 | 3.55e-12 | 62.0 |
| Msa0404990 | MtrunA17_Chr2g0294911 | 36.134 | 119 | 62 | 3 | 17 | 128 | 209 | 320 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404990 | AT2G02060.2 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 7.34e-23 | 90.9 |
| Msa0404990 | AT2G02060.1 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 7.34e-23 | 90.9 |
| Msa0404990 | AT2G40260.1 | 61.765 | 68 | 25 | 1 | 3 | 69 | 65 | 132 | 2.63e-22 | 91.7 |
| Msa0404990 | AT1G14600.1 | 56.164 | 73 | 32 | 0 | 2 | 74 | 6 | 78 | 8.22e-22 | 88.2 |
| Msa0404990 | AT2G42660.1 | 61.017 | 59 | 23 | 0 | 11 | 69 | 42 | 100 | 3.54e-21 | 86.3 |
| Msa0404990 | AT4G04605.1 | 58.730 | 63 | 26 | 0 | 11 | 73 | 6 | 68 | 7.86e-21 | 84.7 |
| Msa0404990 | AT2G38300.1 | 57.812 | 64 | 27 | 0 | 6 | 69 | 41 | 104 | 2.50e-20 | 85.5 |
| Msa0404990 | AT4G04555.1 | 57.627 | 59 | 25 | 0 | 11 | 69 | 6 | 64 | 1.99e-17 | 73.2 |
| Msa0404990 | AT4G04580.1 | 52.542 | 59 | 28 | 0 | 11 | 69 | 6 | 64 | 3.46e-17 | 73.9 |
| Msa0404990 | AT4G28610.1 | 61.224 | 49 | 19 | 0 | 21 | 69 | 227 | 275 | 1.71e-16 | 75.1 |
| Msa0404990 | AT4G13640.1 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.73e-16 | 74.3 |
| Msa0404990 | AT4G13640.2 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.78e-16 | 74.3 |
| Msa0404990 | AT3G04030.3 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 2.10e-16 | 75.1 |
| Msa0404990 | AT3G04030.1 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 2.14e-16 | 75.1 |
| Msa0404990 | AT5G45580.1 | 55.556 | 54 | 24 | 0 | 16 | 69 | 4 | 57 | 3.53e-16 | 73.2 |
| Msa0404990 | AT2G01060.1 | 53.623 | 69 | 28 | 2 | 1 | 69 | 1 | 65 | 3.54e-16 | 73.6 |
| Msa0404990 | AT5G45580.2 | 55.556 | 54 | 24 | 0 | 16 | 69 | 20 | 73 | 3.81e-16 | 73.2 |
| Msa0404990 | AT3G24120.1 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 3.83e-16 | 73.6 |
| Msa0404990 | AT3G24120.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 4.09e-16 | 73.6 |
| Msa0404990 | AT5G18240.2 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.68e-16 | 73.2 |
| Msa0404990 | AT5G18240.3 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.68e-16 | 73.2 |
| Msa0404990 | AT5G18240.5 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.31e-16 | 73.2 |
| Msa0404990 | AT5G18240.1 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.45e-16 | 73.2 |
| Msa0404990 | AT5G18240.4 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.45e-16 | 73.2 |
| Msa0404990 | AT1G79430.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 34 | 84 | 1.10e-15 | 72.8 |
| Msa0404990 | AT3G12730.1 | 60.784 | 51 | 20 | 0 | 19 | 69 | 23 | 73 | 1.59e-15 | 70.9 |
| Msa0404990 | AT2G20400.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 7.38e-15 | 70.5 |
| Msa0404990 | AT2G20400.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 7.73e-15 | 70.5 |
| Msa0404990 | AT5G42630.2 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 9.07e-15 | 68.9 |
| Msa0404990 | AT5G29000.4 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 1.85e-14 | 68.9 |
| Msa0404990 | AT5G42630.1 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 2.02e-14 | 68.6 |
| Msa0404990 | AT5G29000.1 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.50e-14 | 68.9 |
| Msa0404990 | AT5G29000.3 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.50e-14 | 68.9 |
| Msa0404990 | AT5G29000.2 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 2.52e-14 | 68.9 |
| Msa0404990 | AT1G32240.2 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 2.83e-14 | 68.9 |
| Msa0404990 | AT3G04450.3 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 2.95e-14 | 68.6 |
| Msa0404990 | AT1G32240.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 3.41e-14 | 68.6 |
| Msa0404990 | AT5G16560.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 4.11e-14 | 68.6 |
| Msa0404990 | AT2G06020.1 | 44.286 | 70 | 31 | 1 | 14 | 75 | 81 | 150 | 4.39e-14 | 67.8 |
| Msa0404990 | AT3G04450.4 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.43e-14 | 68.6 |
| Msa0404990 | AT3G04450.2 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.43e-14 | 68.6 |
| Msa0404990 | AT3G04450.1 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 4.49e-14 | 68.6 |
| Msa0404990 | AT4G17695.1 | 50.000 | 52 | 26 | 0 | 18 | 69 | 163 | 214 | 7.51e-14 | 67.4 |
| Msa0404990 | AT5G06800.3 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 7.90e-14 | 67.0 |
| Msa0404990 | AT5G06800.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.52e-13 | 67.0 |
| Msa0404990 | AT5G06800.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.56e-13 | 66.6 |
| Msa0404990 | AT3G04030.2 | 33.898 | 118 | 69 | 4 | 1 | 115 | 28 | 139 | 1.90e-13 | 66.6 |
| Msa0404990 | AT3G13040.3 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0404990 | AT3G13040.1 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0404990 | AT3G13040.2 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0404990 | AT1G69580.1 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.57e-13 | 65.9 |
| Msa0404990 | AT1G69580.2 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.77e-13 | 65.9 |
| Msa0404990 | AT3G62670.1 | 44.444 | 81 | 38 | 3 | 6 | 79 | 196 | 276 | 8.99e-11 | 58.9 |
Find 42 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTATTTGTCGTATT+TGG | 0.138762 | 3_2:-38422423 | None:intergenic |
| GATAATGTTATGTTATATTA+AGG | 0.171825 | 3_2:+38422575 | Msa0404990:three_prime_UTR |
| GAATGGGAGATTTAGATATT+TGG | 0.264740 | 3_2:-38422337 | None:intergenic |
| TTACCTTTGGGGTGAACAAC+TGG | 0.338441 | 3_2:-38420422 | None:intergenic |
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3_2:-38418013 | None:intergenic |
| ATAATGTTATGTTATATTAA+GGG | 0.399609 | 3_2:+38422576 | Msa0404990:three_prime_UTR |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3_2:-38417673 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3_2:+38417694 | Msa0404990:CDS |
| TTATATATATTCAAATTGAT+AGG | 0.433288 | 3_2:-38422497 | None:intergenic |
| TCTAATAAGAGTATAATGAT+AGG | 0.437208 | 3_2:-38422554 | None:intergenic |
| AATAGAGAACTGAAAGGGAA+TGG | 0.478210 | 3_2:-38422354 | None:intergenic |
| ATAGAGAACTGAAAGGGAAT+GGG | 0.491342 | 3_2:-38422353 | None:intergenic |
| AACTATTCTTGCACCAACAC+TGG | 0.497047 | 3_2:+38420360 | Msa0404990:CDS |
| AGTTTATATAATCTCTCCCA+TGG | 0.511824 | 3_2:-38422470 | None:intergenic |
| AACAATAATTCTAAGAGAAG+TGG | 0.514149 | 3_2:+38417604 | Msa0404990:CDS |
| CCAGTGGTGCATAGTGATCA+AGG | 0.520200 | 3_2:+38422381 | Msa0404990:three_prime_UTR |
| CCTTGATCACTATGCACCAC+TGG | 0.528723 | 3_2:-38422381 | None:intergenic |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3_2:+38418025 | Msa0404990:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3_2:+38417647 | Msa0404990:CDS |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3_2:+38418024 | Msa0404990:CDS |
| GGTGAACAACTGGAGCAGAT+TGG | 0.536299 | 3_2:-38420412 | None:intergenic |
| CAGTTCTCTATTAATTCCAG+TGG | 0.540686 | 3_2:+38422365 | Msa0404990:three_prime_UTR |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3_2:-38417655 | None:intergenic |
| TGGGAGAGATTATATAAACT+TGG | 0.542403 | 3_2:+38422473 | Msa0404990:three_prime_UTR |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3_2:+38418060 | Msa0404990:CDS |
| AGAAAGCATGCACTTGACTC+AGG | 0.560531 | 3_2:-38422276 | None:intergenic |
| TCTAGTTCTATAAAATCCCA+TGG | 0.570838 | 3_2:+38422453 | Msa0404990:three_prime_UTR |
| GAATTAATAGAGAACTGAAA+GGG | 0.578478 | 3_2:-38422359 | None:intergenic |
| GGAATTAATAGAGAACTGAA+AGG | 0.580222 | 3_2:-38422360 | None:intergenic |
| TTTGATAAAATTTACCTTTG+GGG | 0.582723 | 3_2:-38420433 | None:intergenic |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3_2:-38417660 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3_2:+38417697 | Msa0404990:CDS |
| GCTCCAGTTGTTCACCCCAA+AGG | 0.588268 | 3_2:+38420419 | Msa0404990:CDS |
| AATATACAAGACAAACAGAA+AGG | 0.591808 | 3_2:-38422626 | None:intergenic |
| GTTTATATAATCTCTCCCAT+GGG | 0.598304 | 3_2:-38422469 | None:intergenic |
| ACCAACACTGGAAGAAAACA+AGG | 0.606646 | 3_2:+38420372 | Msa0404990:CDS |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3_2:+38417654 | Msa0404990:CDS |
| TTAGATGTACAGGAACGTGA+AGG | 0.615592 | 3_2:+38420333 | Msa0404990:intron |
| TAGATGTACAGGAACGTGAA+GGG | 0.615844 | 3_2:+38420334 | Msa0404990:intron |
| TAGGTATTAATACATGTGAA+AGG | 0.618651 | 3_2:-38422535 | None:intergenic |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3_2:+38418026 | Msa0404990:CDS |
| CTAGTTCTATAAAATCCCAT+GGG | 0.658747 | 3_2:+38422454 | Msa0404990:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATATGATATCAATAT+AGG | - | chr3_2:38419177-38419196 | None:intergenic | 10.0% |
| !!! | TATTATATACATTTTTTTAG+AGG | - | chr3_2:38420189-38420208 | None:intergenic | 10.0% |
| !!! | TTTTTATTCAAAAAATCAAA+TGG | + | chr3_2:38420463-38420482 | Msa0404990:intron | 10.0% |
| !! | AATATTCTATTAAATTAGTA+AGG | + | chr3_2:38421305-38421324 | Msa0404990:intron | 10.0% |
| !! | ATATTCTATTAAATTAGTAA+GGG | + | chr3_2:38421306-38421325 | Msa0404990:intron | 10.0% |
| !!! | AATAATTGTCTTTTTTTTTT+TGG | - | chr3_2:38421440-38421459 | None:intergenic | 10.0% |
| !!! | TGATAGTTTTTTTTTTTTTT+AGG | + | chr3_2:38421576-38421595 | Msa0404990:intron | 10.0% |
| !!! | GATAGTTTTTTTTTTTTTTA+GGG | + | chr3_2:38421577-38421596 | Msa0404990:intron | 10.0% |
| !!! | TTATTTTTATTTCATTTTAG+AGG | + | chr3_2:38421679-38421698 | Msa0404990:intron | 10.0% |
| !!! | TATTTTTATTTCATTTTAGA+GGG | + | chr3_2:38421680-38421699 | Msa0404990:intron | 10.0% |
| !! | TTATATATATTCAAATTGAT+AGG | - | chr3_2:38422500-38422519 | None:intergenic | 10.0% |
| !! | ATAATGTTATGTTATATTAA+GGG | + | chr3_2:38422576-38422595 | Msa0404990:three_prime_UTR | 10.0% |
| !!! | TTATTTTCTTCTTTTAATCA+TGG | + | chr3_2:38417873-38417892 | Msa0404990:intron | 15.0% |
| !! | ATTATGTATAAGTATTAAGA+CGG | + | chr3_2:38417925-38417944 | Msa0404990:intron | 15.0% |
| !! | TTGTATATATTCTAATAATG+AGG | - | chr3_2:38418143-38418162 | None:intergenic | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | + | chr3_2:38418281-38418300 | Msa0404990:intron | 15.0% |
| !!! | AAATGCATTTTAAAATAATC+TGG | - | chr3_2:38419344-38419363 | None:intergenic | 15.0% |
| !!! | ACCAATTTTTACTTATATTT+TGG | + | chr3_2:38419768-38419787 | Msa0404990:intron | 15.0% |
| !!! | CCAATTTTTACTTATATTTT+GGG | + | chr3_2:38419769-38419788 | Msa0404990:intron | 15.0% |
| !!! | TTTTCATTCACTTTTTTATT+AGG | + | chr3_2:38419912-38419931 | Msa0404990:intron | 15.0% |
| !! | ATTTGATAAAATTTACCTTT+GGG | - | chr3_2:38420437-38420456 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTGATATGAT+AGG | + | chr3_2:38420956-38420975 | Msa0404990:intron | 15.0% |
| !!! | GTACAAAATTGAATTTTATT+AGG | + | chr3_2:38421256-38421275 | Msa0404990:intron | 15.0% |
| !!! | ATCTAAAATTATTTTAAAGG+TGG | - | chr3_2:38421333-38421352 | None:intergenic | 15.0% |
| !!! | GAGATCTAAAATTATTTTAA+AGG | - | chr3_2:38421336-38421355 | None:intergenic | 15.0% |
| !! | GTAGTAAAATTATTTAGATT+AGG | - | chr3_2:38421532-38421551 | None:intergenic | 15.0% |
| !! | GATAATGTTATGTTATATTA+AGG | + | chr3_2:38422575-38422594 | Msa0404990:three_prime_UTR | 15.0% |
| !!! | ATGATCATCATGTTTTATAT+AGG | + | chr3_2:38417742-38417761 | Msa0404990:intron | 20.0% |
| !!! | TGATCATCATGTTTTATATA+GGG | + | chr3_2:38417743-38417762 | Msa0404990:intron | 20.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | - | chr3_2:38417824-38417843 | None:intergenic | 20.0% |
| !!! | TTAATCATGGTTTTAAATTG+TGG | + | chr3_2:38417886-38417905 | Msa0404990:intron | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | - | chr3_2:38418016-38418035 | None:intergenic | 20.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | - | chr3_2:38418127-38418146 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | + | chr3_2:38418217-38418236 | Msa0404990:intron | 20.0% |
| !!! | TTCTTATTTTTGATAGACTA+TGG | + | chr3_2:38418243-38418262 | Msa0404990:intron | 20.0% |
| !!! | TTCTTTTGATAATGAAATCA+TGG | + | chr3_2:38418351-38418370 | Msa0404990:intron | 20.0% |
| !!! | TCTTTTGATAATGAAATCAT+GGG | + | chr3_2:38418352-38418371 | Msa0404990:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | - | chr3_2:38418509-38418528 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | + | chr3_2:38419011-38419030 | Msa0404990:intron | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | - | chr3_2:38419043-38419062 | None:intergenic | 20.0% |
| !!! | TTATCACTCCTATTTTTTAA+TGG | + | chr3_2:38419225-38419244 | Msa0404990:intron | 20.0% |
| !! | AAACAAATACATGATTACAT+TGG | + | chr3_2:38419315-38419334 | Msa0404990:intron | 20.0% |
| !!! | ACTTTTATATGCTTGAAAAT+CGG | + | chr3_2:38419610-38419629 | Msa0404990:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | - | chr3_2:38419690-38419709 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | - | chr3_2:38419691-38419710 | None:intergenic | 20.0% |
| !! | CCCAAAATATAAGTAAAAAT+TGG | - | chr3_2:38419772-38419791 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATATTTTGGGA+CGG | + | chr3_2:38419773-38419792 | Msa0404990:intron | 20.0% |
| !!! | TATATGTTACATTCTTGTTT+AGG | + | chr3_2:38419802-38419821 | Msa0404990:intron | 20.0% |
| !!! | TCTAATATTCACTCTTTTAT+TGG | - | chr3_2:38420013-38420032 | None:intergenic | 20.0% |
| !! | TTTCTGAACGAAATAATTTA+TGG | + | chr3_2:38420140-38420159 | Msa0404990:intron | 20.0% |
| !! | TTTGATAAAATTTACCTTTG+GGG | - | chr3_2:38420436-38420455 | None:intergenic | 20.0% |
| !! | CATTTGATAAAATTTACCTT+TGG | - | chr3_2:38420438-38420457 | None:intergenic | 20.0% |
| !!! | CAAAGGTAAATTTTATCAAA+TGG | + | chr3_2:38420436-38420455 | Msa0404990:intron | 20.0% |
| !! | ATGTTAAGCAAAGTAAAATA+AGG | - | chr3_2:38420824-38420843 | None:intergenic | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | - | chr3_2:38421050-38421069 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | + | chr3_2:38421050-38421069 | Msa0404990:intron | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | - | chr3_2:38421050-38421069 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | + | chr3_2:38421050-38421069 | Msa0404990:intron | 20.0% |
| !!! | TCTTTTTATTTTAGGAAAGA+GGG | - | chr3_2:38421373-38421392 | None:intergenic | 20.0% |
| !!! | ATCTTTTTATTTTAGGAAAG+AGG | - | chr3_2:38421374-38421393 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTTAGGTATG+TGG | - | chr3_2:38421652-38421671 | None:intergenic | 20.0% |
| !! | AAGGGATAATTGAAAAATTT+AGG | - | chr3_2:38421659-38421678 | None:intergenic | 20.0% |
| !! | ATGAAAATCAATCAAAGAAA+TGG | - | chr3_2:38421757-38421776 | None:intergenic | 20.0% |
| !!! | TCATCAATCTTTTTTTCTTT+AGG | + | chr3_2:38421792-38421811 | Msa0404990:intron | 20.0% |
| !! | TCATTATTATGATCTAAATC+AGG | + | chr3_2:38421978-38421997 | Msa0404990:intron | 20.0% |
| !!! | ATTTCCCTGTTTTATATTAT+AGG | + | chr3_2:38422094-38422113 | Msa0404990:intron | 20.0% |
| !! | ACTACCTATAATATAAAACA+GGG | - | chr3_2:38422101-38422120 | None:intergenic | 20.0% |
| !! | TACTACCTATAATATAAAAC+AGG | - | chr3_2:38422102-38422121 | None:intergenic | 20.0% |
| !! | ATGTTTGAATTGATAAAAGT+AGG | - | chr3_2:38422165-38422184 | None:intergenic | 20.0% |
| !! | AATTTATTGCTATATATTGC+AGG | + | chr3_2:38422251-38422270 | Msa0404990:intron | 20.0% |
| !!! | TCTAATAAGAGTATAATGAT+AGG | - | chr3_2:38422557-38422576 | None:intergenic | 20.0% |
| !! | AACAATAATTCTAAGAGAAG+TGG | + | chr3_2:38417604-38417623 | Msa0404990:CDS | 25.0% |
| ! | TATGAGATCTCTTAATTGAA+GGG | - | chr3_2:38417793-38417812 | None:intergenic | 25.0% |
| ! | ATATGAGATCTCTTAATTGA+AGG | - | chr3_2:38417794-38417813 | None:intergenic | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | + | chr3_2:38417985-38418004 | Msa0404990:intron | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | - | chr3_2:38418107-38418126 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | - | chr3_2:38418123-38418142 | None:intergenic | 25.0% |
| ! | TATCAAAAATAAGAAGATCC+AGG | - | chr3_2:38418238-38418257 | None:intergenic | 25.0% |
| !! | TAGTTCTATATATTCCCTTA+TGG | + | chr3_2:38418318-38418337 | Msa0404990:intron | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | - | chr3_2:38418335-38418354 | None:intergenic | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | - | chr3_2:38418336-38418355 | None:intergenic | 25.0% |
| ! | CAATACCTTGATTACATTAA+GGG | - | chr3_2:38418705-38418724 | None:intergenic | 25.0% |
| ! | AAATCTGTATATCTAACTGA+GGG | - | chr3_2:38418733-38418752 | None:intergenic | 25.0% |
| ! | AAAATCTGTATATCTAACTG+AGG | - | chr3_2:38418734-38418753 | None:intergenic | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | + | chr3_2:38419010-38419029 | Msa0404990:intron | 25.0% |
| !!! | GATGAACATATTTTTTCAAG+AGG | + | chr3_2:38419042-38419061 | Msa0404990:intron | 25.0% |
| !!! | CTCGAACACTTATTTTTTAT+TGG | + | chr3_2:38419095-38419114 | Msa0404990:intron | 25.0% |
| ! | CTTTGGTACCATTAAAAAAT+AGG | - | chr3_2:38419236-38419255 | None:intergenic | 25.0% |
| ! | TTTAATCAAGGTGAATTCTT+TGG | - | chr3_2:38419253-38419272 | None:intergenic | 25.0% |
| ! | TTATATGAAGCAATTACCAT+AGG | + | chr3_2:38419400-38419419 | Msa0404990:intron | 25.0% |
| !!! | TTTTTGCTTATATTTTGGGA+CGG | - | chr3_2:38419686-38419705 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | + | chr3_2:38419687-38419706 | Msa0404990:intron | 25.0% |
| ! | TCAACGAAAGTTAATGTATT+TGG | + | chr3_2:38419710-38419729 | Msa0404990:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr3_2:38419749-38419768 | None:intergenic | 25.0% |
| ! | AAGTATATGTTGCCAAAAAA+AGG | + | chr3_2:38419828-38419847 | Msa0404990:intron | 25.0% |
| !!! | TCTTCACTTTTTCCTTTTTT+TGG | - | chr3_2:38419843-38419862 | None:intergenic | 25.0% |
| ! | CATTCTCTTAACATTATTGA+TGG | - | chr3_2:38420302-38420321 | None:intergenic | 25.0% |
| ! | AATATGAACTTCCAAAAAGT+TGG | + | chr3_2:38420576-38420595 | Msa0404990:intron | 25.0% |
| ! | ATCCTAAAAAGATTTAAAGG+TGG | - | chr3_2:38420671-38420690 | None:intergenic | 25.0% |
| !!! | ACCTTTAAATCTTTTTAGGA+TGG | + | chr3_2:38420670-38420689 | Msa0404990:intron | 25.0% |
| ! | ACCATCCTAAAAAGATTTAA+AGG | - | chr3_2:38420674-38420693 | None:intergenic | 25.0% |
| !! | AAGAAGAGATGTAATGTTTT+AGG | - | chr3_2:38420712-38420731 | None:intergenic | 25.0% |
| !!! | AGATGGACTATTATTAGTTT+TGG | - | chr3_2:38420767-38420786 | None:intergenic | 25.0% |
| ! | TCACATGCTATATATGTAAT+AGG | - | chr3_2:38420914-38420933 | None:intergenic | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | + | chr3_2:38420991-38421010 | Msa0404990:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | + | chr3_2:38421073-38421092 | Msa0404990:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | - | chr3_2:38421078-38421097 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | + | chr3_2:38421093-38421112 | Msa0404990:intron | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | + | chr3_2:38420991-38421010 | Msa0404990:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | + | chr3_2:38421073-38421092 | Msa0404990:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | - | chr3_2:38421078-38421097 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | + | chr3_2:38421093-38421112 | Msa0404990:intron | 25.0% |
| !!! | TGGATGCATCTTTTTATTTT+AGG | - | chr3_2:38421381-38421400 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTAGATCATGA+AGG | - | chr3_2:38421427-38421446 | None:intergenic | 25.0% |
| !!! | AGTTGAAAAGTTGATGTATA+TGG | + | chr3_2:38421613-38421632 | Msa0404990:intron | 25.0% |
| !!! | TCAAAGAAATGGACTAATAT+AGG | - | chr3_2:38421746-38421765 | None:intergenic | 25.0% |
| !!! | CTTTGATTGATTTTCATTTC+TGG | + | chr3_2:38421760-38421779 | Msa0404990:intron | 25.0% |
| !! | GCATAAAAACCTAACTTTTA+AGG | + | chr3_2:38422034-38422053 | Msa0404990:intron | 25.0% |
| !! | CTTTAAGAACCTTAAAAGTT+AGG | - | chr3_2:38422046-38422065 | None:intergenic | 25.0% |
| !!! | TACTATTTTAATTTCTCTGC+TGG | + | chr3_2:38422120-38422139 | Msa0404990:intron | 25.0% |
| ! | GAATTAATAGAGAACTGAAA+GGG | - | chr3_2:38422362-38422381 | None:intergenic | 25.0% |
| ! | TCATGATTATTTGTCGTATT+TGG | - | chr3_2:38422426-38422445 | None:intergenic | 25.0% |
| ! | TAGGTATTAATACATGTGAA+AGG | - | chr3_2:38422538-38422557 | None:intergenic | 25.0% |
| ! | AATATACAAGACAAACAGAA+AGG | - | chr3_2:38422629-38422648 | None:intergenic | 25.0% |
| !! | ACAAAGTATTGATGAAGTTC+CGG | - | chr3_2:38417676-38417695 | None:intergenic | 30.0% |
| TTTGAATATGATGCAAGTGA+AGG | + | chr3_2:38418024-38418043 | Msa0404990:CDS | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | + | chr3_2:38418025-38418044 | Msa0404990:CDS | 30.0% | |
| ! | CTGGAGATGACTTTTAATAT+GGG | - | chr3_2:38418062-38418081 | None:intergenic | 30.0% |
| ACATGAACTATATATGTACC+TGG | - | chr3_2:38418081-38418100 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | - | chr3_2:38418108-38418127 | None:intergenic | 30.0% | |
| GGAATATATAGAACTAACGT+AGG | - | chr3_2:38418314-38418333 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | + | chr3_2:38418379-38418398 | Msa0404990:intron | 30.0% | |
| ACAATTACAACAGTAGTATG+TGG | + | chr3_2:38418419-38418438 | Msa0404990:intron | 30.0% | |
| AACGTTTGTGAGATATACAT+GGG | - | chr3_2:38418474-38418493 | None:intergenic | 30.0% | |
| CTAATCCCTTAATGTAATCA+AGG | + | chr3_2:38418697-38418716 | Msa0404990:intron | 30.0% | |
| CCAATACCTTGATTACATTA+AGG | - | chr3_2:38418706-38418725 | None:intergenic | 30.0% | |
| CCTTAATGTAATCAAGGTAT+TGG | + | chr3_2:38418703-38418722 | Msa0404990:intron | 30.0% | |
| ! | CATTCTTTTATACGAGATGA+GGG | - | chr3_2:38418778-38418797 | None:intergenic | 30.0% |
| ! | TCATTCTTTTATACGAGATG+AGG | - | chr3_2:38418779-38418798 | None:intergenic | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | + | chr3_2:38418900-38418919 | Msa0404990:intron | 30.0% |
| !! | TGATGAGGTGATTTTAATCA+AGG | - | chr3_2:38419265-38419284 | None:intergenic | 30.0% |
| AAGATGTGTATATCTTGATG+AGG | - | chr3_2:38419280-38419299 | None:intergenic | 30.0% | |
| TTTAGATTTCCGAACAACAT+AGG | - | chr3_2:38420054-38420073 | None:intergenic | 30.0% | |
| CAATAATGTTAAGAGAATGC+TGG | + | chr3_2:38420303-38420322 | Msa0404990:intron | 30.0% | |
| ! | GTCCACCTTTAAATCTTTTT+AGG | + | chr3_2:38420666-38420685 | Msa0404990:intron | 30.0% |
| CAATATAGACTCCTGAAAAA+AGG | - | chr3_2:38420795-38420814 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAGGAGTCTATAT+TGG | + | chr3_2:38420793-38420812 | Msa0404990:intron | 30.0% |
| ! | GTTAACACACAGTTTTACTT+CGG | - | chr3_2:38420892-38420911 | None:intergenic | 30.0% |
| !! | GAAAGTCTTTTGTTGTGTAA+AGG | - | chr3_2:38421940-38421959 | None:intergenic | 30.0% |
| !! | AAGGTTCTTAAAGAGTATTC+TGG | + | chr3_2:38422053-38422072 | Msa0404990:intron | 30.0% |
| GAATGGGAGATTTAGATATT+TGG | - | chr3_2:38422340-38422359 | None:intergenic | 30.0% | |
| GGAATTAATAGAGAACTGAA+AGG | - | chr3_2:38422363-38422382 | None:intergenic | 30.0% | |
| !! | TCTAGTTCTATAAAATCCCA+TGG | + | chr3_2:38422453-38422472 | Msa0404990:three_prime_UTR | 30.0% |
| !! | CTAGTTCTATAAAATCCCAT+GGG | + | chr3_2:38422454-38422473 | Msa0404990:three_prime_UTR | 30.0% |
| GTTTATATAATCTCTCCCAT+GGG | - | chr3_2:38422472-38422491 | None:intergenic | 30.0% | |
| AGTTTATATAATCTCTCCCA+TGG | - | chr3_2:38422473-38422492 | None:intergenic | 30.0% | |
| TGGGAGAGATTATATAAACT+TGG | + | chr3_2:38422473-38422492 | Msa0404990:three_prime_UTR | 30.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | + | chr3_2:38417694-38417713 | Msa0404990:CDS | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | + | chr3_2:38418026-38418045 | Msa0404990:CDS | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | - | chr3_2:38418063-38418082 | None:intergenic | 35.0% |
| CCATATTAAAAGTCATCTCC+AGG | + | chr3_2:38418060-38418079 | Msa0404990:CDS | 35.0% | |
| TATAGAACTAACGTAGGAAC+AGG | - | chr3_2:38418308-38418327 | None:intergenic | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | + | chr3_2:38418378-38418397 | Msa0404990:intron | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | - | chr3_2:38418475-38418494 | None:intergenic | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | - | chr3_2:38418554-38418573 | None:intergenic | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | - | chr3_2:38418555-38418574 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | - | chr3_2:38418566-38418585 | None:intergenic | 35.0% | |
| AAAGTAACAACGTAGAGAAG+TGG | - | chr3_2:38418567-38418586 | None:intergenic | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | - | chr3_2:38419039-38419058 | None:intergenic | 35.0% | |
| TGAAGCAATTACCATAGGTT+AGG | + | chr3_2:38419405-38419424 | Msa0404990:intron | 35.0% | |
| ATTACCATAGGTTAGGTACA+TGG | + | chr3_2:38419412-38419431 | Msa0404990:intron | 35.0% | |
| TTACCATAGGTTAGGTACAT+GGG | + | chr3_2:38419413-38419432 | Msa0404990:intron | 35.0% | |
| ! | TTTTCTCTTTGTCTTTCGTC+AGG | + | chr3_2:38419497-38419516 | Msa0404990:intron | 35.0% |
| ! | TGAGATGCTATAAAAGCACA+CGG | + | chr3_2:38419554-38419573 | Msa0404990:intron | 35.0% |
| !!! | TTACTTATATTTTGGGACGG+AGG | + | chr3_2:38419776-38419795 | Msa0404990:intron | 35.0% |
| !!! | TACTTATATTTTGGGACGGA+GGG | + | chr3_2:38419777-38419796 | Msa0404990:intron | 35.0% |
| AGCACTAATCCTATGTTGTT+CGG | + | chr3_2:38420042-38420061 | Msa0404990:intron | 35.0% | |
| GGAAATCTAAAAGCCATACT+TGG | + | chr3_2:38420063-38420082 | Msa0404990:intron | 35.0% | |
| AATCACACTTACACCAAGTA+TGG | - | chr3_2:38420079-38420098 | None:intergenic | 35.0% | |
| AATGTTAAGAGAATGCTGGT+CGG | + | chr3_2:38420307-38420326 | Msa0404990:intron | 35.0% | |
| ! | GTAAGAGTTCACCAACTTTT+TGG | - | chr3_2:38420590-38420609 | None:intergenic | 35.0% |
| TAGACTCCTGAAAAAAGGTA+TGG | - | chr3_2:38420790-38420809 | None:intergenic | 35.0% | |
| CCAAAGTCTCTGATATAGTT+TGG | - | chr3_2:38421503-38421522 | None:intergenic | 35.0% | |
| CCAAACTATATCAGAGACTT+TGG | + | chr3_2:38421500-38421519 | Msa0404990:intron | 35.0% | |
| TTGATATTCCTCGATCTGAA+GGG | - | chr3_2:38421904-38421923 | None:intergenic | 35.0% | |
| ATTGATATTCCTCGATCTGA+AGG | - | chr3_2:38421905-38421924 | None:intergenic | 35.0% | |
| ATAGAGAACTGAAAGGGAAT+GGG | - | chr3_2:38422356-38422375 | None:intergenic | 35.0% | |
| AATAGAGAACTGAAAGGGAA+TGG | - | chr3_2:38422357-38422376 | None:intergenic | 35.0% | |
| CAGTTCTCTATTAATTCCAG+TGG | + | chr3_2:38422365-38422384 | Msa0404990:three_prime_UTR | 35.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | + | chr3_2:38417697-38417716 | Msa0404990:CDS | 40.0% | |
| CTGCAAAAAATACCCTAGAC+TGG | - | chr3_2:38418394-38418413 | None:intergenic | 40.0% | |
| AGTAACAACGTAGAGAAGTG+GGG | - | chr3_2:38418565-38418584 | None:intergenic | 40.0% | |
| !!! | TGCTTATATTTTGGGACGGA+AGG | - | chr3_2:38419682-38419701 | None:intergenic | 40.0% |
| !! | TGGTCGGTTTTTAGATGTAC+AGG | + | chr3_2:38420323-38420342 | Msa0404990:intron | 40.0% |
| TTAGATGTACAGGAACGTGA+AGG | + | chr3_2:38420333-38420352 | Msa0404990:intron | 40.0% | |
| TAGATGTACAGGAACGTGAA+GGG | + | chr3_2:38420334-38420353 | Msa0404990:intron | 40.0% | |
| AACTATTCTTGCACCAACAC+TGG | + | chr3_2:38420360-38420379 | Msa0404990:CDS | 40.0% | |
| ACCAACACTGGAAGAAAACA+AGG | + | chr3_2:38420372-38420391 | Msa0404990:CDS | 40.0% | |
| ! | CCTGAAAAAAGGTATGGAGA+TGG | - | chr3_2:38420784-38420803 | None:intergenic | 40.0% |
| !!! | CCATCTCCATACCTTTTTTC+AGG | + | chr3_2:38420781-38420800 | Msa0404990:intron | 40.0% |
| TCCATGTTAGACCTCTTCTT+TGG | + | chr3_2:38421397-38421416 | Msa0404990:intron | 40.0% | |
| CCATGTTAGACCTCTTCTTT+GGG | + | chr3_2:38421398-38421417 | Msa0404990:intron | 40.0% | |
| TCGATCTGAAGGGAAATGAA+AGG | - | chr3_2:38421894-38421913 | None:intergenic | 40.0% | |
| TTTCATTTCCCTTCAGATCG+AGG | + | chr3_2:38421893-38421912 | Msa0404990:intron | 40.0% | |
| ATGCCCATGTACCTAACCTA+TGG | - | chr3_2:38419419-38419438 | None:intergenic | 45.0% | |
| !!! | GCCTTGTTTTCTTCCAGTGT+TGG | - | chr3_2:38420376-38420395 | None:intergenic | 45.0% |
| !! | TTACCTTTGGGGTGAACAAC+TGG | - | chr3_2:38420425-38420444 | None:intergenic | 45.0% |
| CCCAAAGAAGAGGTCTAACA+TGG | - | chr3_2:38421401-38421420 | None:intergenic | 45.0% | |
| !! | ATGAAGGCATCCCAAAGAAG+AGG | - | chr3_2:38421411-38421430 | None:intergenic | 45.0% |
| ! | AGAAAGCATGCACTTGACTC+AGG | - | chr3_2:38422279-38422298 | None:intergenic | 45.0% |
| !! | AAAATGAAATAAAAATAAAA+GGG | - | chr3_2:38421677-38421696 | None:intergenic | 5.0% |
| !! | TAAAATGAAATAAAAATAAA+AGG | - | chr3_2:38421678-38421697 | None:intergenic | 5.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | - | chr3_2:38417642-38417661 | None:intergenic | 50.0% |
| GGTGAACAACTGGAGCAGAT+TGG | - | chr3_2:38420415-38420434 | None:intergenic | 50.0% | |
| !!! | CCGTTATTTTGGGGGCATGA+GGG | - | chr3_2:38422008-38422027 | None:intergenic | 50.0% |
| CCCTCATGCCCCCAAAATAA+CGG | + | chr3_2:38422005-38422024 | Msa0404990:intron | 50.0% | |
| !!! | TCCGTTATTTTGGGGGCATG+AGG | - | chr3_2:38422009-38422028 | None:intergenic | 50.0% |
| CCTTGATCACTATGCACCAC+TGG | - | chr3_2:38422384-38422403 | None:intergenic | 50.0% | |
| CCAGTGGTGCATAGTGATCA+AGG | + | chr3_2:38422381-38422400 | Msa0404990:three_prime_UTR | 50.0% | |
| CAAAACAGCCACGCCTTCGA+TGG | + | chr3_2:38417647-38417666 | Msa0404990:CDS | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | - | chr3_2:38417663-38417682 | None:intergenic | 55.0% | |
| GCTCCAGTTGTTCACCCCAA+AGG | + | chr3_2:38420419-38420438 | Msa0404990:CDS | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | + | chr3_2:38417654-38417673 | Msa0404990:CDS | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | - | chr3_2:38417658-38417677 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 38417533 | 38422665 | 38417533 | ID=Msa0404990;Name=Msa0404990 |
| chr3_2 | mRNA | 38417533 | 38422665 | 38417533 | ID=Msa0404990-mRNA-1;Parent=Msa0404990;Name=Msa0404990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=65|0.5|0.4|1|0.5|0.8|5|317|145 |
| chr3_2 | exon | 38417533 | 38417727 | 38417533 | ID=Msa0404990-mRNA-1:exon:7620;Parent=Msa0404990-mRNA-1 |
| chr3_2 | exon | 38418005 | 38418081 | 38418005 | ID=Msa0404990-mRNA-1:exon:7621;Parent=Msa0404990-mRNA-1 |
| chr3_2 | exon | 38420345 | 38420440 | 38420345 | ID=Msa0404990-mRNA-1:exon:7622;Parent=Msa0404990-mRNA-1 |
| chr3_2 | exon | 38421909 | 38421967 | 38421909 | ID=Msa0404990-mRNA-1:exon:7623;Parent=Msa0404990-mRNA-1 |
| chr3_2 | exon | 38422273 | 38422665 | 38422273 | ID=Msa0404990-mRNA-1:exon:7624;Parent=Msa0404990-mRNA-1 |
| chr3_2 | five_prime_UTR | 38417533 | 38417597 | 38417533 | ID=Msa0404990-mRNA-1:five_prime_utr;Parent=Msa0404990-mRNA-1 |
| chr3_2 | CDS | 38417598 | 38417727 | 38417598 | ID=Msa0404990-mRNA-1:cds;Parent=Msa0404990-mRNA-1 |
| chr3_2 | CDS | 38418005 | 38418081 | 38418005 | ID=Msa0404990-mRNA-1:cds;Parent=Msa0404990-mRNA-1 |
| chr3_2 | CDS | 38420345 | 38420440 | 38420345 | ID=Msa0404990-mRNA-1:cds;Parent=Msa0404990-mRNA-1 |
| chr3_2 | CDS | 38421909 | 38421967 | 38421909 | ID=Msa0404990-mRNA-1:cds;Parent=Msa0404990-mRNA-1 |
| chr3_2 | CDS | 38422273 | 38422348 | 38422273 | ID=Msa0404990-mRNA-1:cds;Parent=Msa0404990-mRNA-1 |
| chr3_2 | three_prime_UTR | 38422349 | 38422665 | 38422349 | ID=Msa0404990-mRNA-1:three_prime_utr;Parent=Msa0404990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
