AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428780 MtrunA17_Chr7g0254541 97.872 94 2 0 1 94 1 94 2.89e-62 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428780 AT3G03610.1 56.436 101 34 2 1 94 1 98 1.15e-34 121
Msa1428780 AT3G03610.3 56.436 101 34 2 1 94 1 98 1.15e-34 121
Msa1428780 AT3G03610.2 56.436 101 34 2 1 94 1 98 1.15e-34 121
Msa1428780 AT3G03610.4 56.436 101 34 2 1 94 13 110 1.31e-34 121

Find 83 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAGATTATTCTGATATT+TGG 0.132675 tig0026409:-65362 None:intergenic
CTAACAAATGCTTAAATAAA+AGG 0.136455 tig0026409:-65400 None:intergenic
CGTTTCACTCGTTGAAATTC+AGG 0.193695 tig0026409:+60150 Msa1428780:five_prime_UTR
TTTGCAGCAAACATTGTTCT+AGG 0.245670 tig0026409:+61913 Msa1428780:intron
CAGGAACATTTGGATACTTC+TGG 0.260450 tig0026409:+60694 Msa1428780:CDS
ACGAGTGAAACGAATCTCTT+TGG 0.304602 tig0026409:-60139 None:intergenic
TTCATTGAATGAACCGTTGC+TGG 0.321817 tig0026409:+60723 Msa1428780:CDS
ATCAGATTGTTGGAAGGAAA+TGG 0.322781 tig0026409:+63570 Msa1428780:three_prime_UTR
AGCAAAGCGTGCTACATATA+TGG 0.332900 tig0026409:+65000 Msa1428780:three_prime_UTR
CATGTAAATCACAAGTGAAA+TGG 0.357229 tig0026409:+65334 Msa1428780:three_prime_UTR
ATGTAAATCACAAGTGAAAT+GGG 0.362888 tig0026409:+65335 Msa1428780:three_prime_UTR
TGGAAAACGGCAGGAACATT+TGG 0.381041 tig0026409:+60684 Msa1428780:CDS
ACCATGGTTTGCAGGGGTGG+AGG 0.391694 tig0026409:+64046 Msa1428780:intron
CTCCACTTAAATCAGATTGT+TGG 0.392141 tig0026409:+63560 Msa1428780:three_prime_UTR
ATACTATAATTCTTTACTAT+AGG 0.396867 tig0026409:-60612 None:intergenic
CGGCTTGAAGTTCCCTTTGA+CGG 0.402080 tig0026409:+62774 Msa1428780:three_prime_UTR
TAACAAATGCTTAAATAAAA+GGG 0.404789 tig0026409:-65399 None:intergenic
GCAAACATTGTTCTAGGGTC+TGG 0.406999 tig0026409:+61919 Msa1428780:intron
TTCGAACCTCATTGCGCAAT+GGG 0.413507 tig0026409:+60940 Msa1428780:CDS
CCATGGTTTGCAGGGGTGGA+GGG 0.415346 tig0026409:+64047 Msa1428780:intron
TTGATTCCAGCTACTGCAAA+TGG 0.423995 tig0026409:-64290 None:intergenic
ATTTATGTTGGTGCAGATGC+TGG 0.425464 tig0026409:+64319 Msa1428780:three_prime_UTR
GAAAGAAGGCGCAAATTCAT+TGG 0.426457 tig0026409:+60906 Msa1428780:CDS
GAATACTTTACATACACTTA+AGG 0.426614 tig0026409:-65288 None:intergenic
TTGCATTGCCTTTCAAATGA+TGG 0.429352 tig0026409:+64964 Msa1428780:three_prime_UTR
ACACACCTAAAATCTGTTGA+TGG 0.432758 tig0026409:-63610 None:intergenic
TCAGATTGTTGGAAGGAAAT+GGG 0.433239 tig0026409:+63571 Msa1428780:three_prime_UTR
TTCCAACAATCTGATTTAAG+TGG 0.437679 tig0026409:-63562 None:intergenic
GCGCAATGGGCACAGTGGTT+AGG 0.448913 tig0026409:+60953 Msa1428780:CDS
GTTGTTCCATCTTCTTCGTC+GGG 0.460134 tig0026409:+64887 Msa1428780:intron
ATCTCTATACATACCTGCAC+AGG 0.463215 tig0026409:-62022 None:intergenic
AGTTGTTCCATCTTCTTCGT+CGG 0.478166 tig0026409:+64886 Msa1428780:intron
CTTGTTTGTGCAATAATCGC+TGG 0.486929 tig0026409:-64241 None:intergenic
GCTGCTTGAGGAGGATGAAA+TGG 0.495909 tig0026409:+64925 Msa1428780:three_prime_UTR
TTCCATCGACATCCCCGTGA+TGG 0.495966 tig0026409:-60666 None:intergenic
CAGATGCTGGATCTTCAATC+AGG 0.501555 tig0026409:+64332 Msa1428780:three_prime_UTR
GAATATCCATTTGCAGTAGC+TGG 0.503288 tig0026409:+64284 Msa1428780:three_prime_UTR
CATATTCCCGACGAAGAAGA+TGG 0.508986 tig0026409:-64893 None:intergenic
CTCCAGTATAAAAGATATAC+CGG 0.509227 tig0026409:+65188 Msa1428780:three_prime_UTR
TTGCAGCAAACATTGTTCTA+GGG 0.514573 tig0026409:+61914 Msa1428780:intron
AGTGGAGGAAGCTCTCGGTC+AGG 0.522963 tig0026409:-63544 None:intergenic
TATGTACGCTTGAAGATTTG+TGG 0.524001 tig0026409:+60873 Msa1428780:CDS
AATCAATATCTCATTTATGT+TGG 0.524266 tig0026409:+64307 Msa1428780:three_prime_UTR
CGATTATTGCACAAACAAGA+TGG 0.527326 tig0026409:+64245 Msa1428780:three_prime_UTR
TCCAACACTTAGCCCTGTGC+AGG 0.527434 tig0026409:+62009 Msa1428780:three_prime_UTR
ACGGGGATGTCGATGGAAAA+CGG 0.534153 tig0026409:+60671 Msa1428780:CDS
CAACAATCTGATTTAAGTGG+AGG 0.536607 tig0026409:-63559 None:intergenic
TGCACAGGGCTAAGTGTTGG+AGG 0.541071 tig0026409:-62007 None:intergenic
CTCCATCACGGGGATGTCGA+TGG 0.541121 tig0026409:+60664 Msa1428780:CDS
TTTCGAACCTCATTGCGCAA+TGG 0.542371 tig0026409:+60939 Msa1428780:CDS
AACAGCTCAAACGTGTGCTG+TGG 0.546422 tig0026409:-59960 None:intergenic
ACCTGCACAGGGCTAAGTGT+TGG 0.548439 tig0026409:-62010 None:intergenic
ATGGATATTCCCACTCTGCT+CGG 0.549193 tig0026409:-64271 None:intergenic
TTACTTGCAAAACAATAGGA+TGG 0.554335 tig0026409:+61982 Msa1428780:exon
CACACCTAAAATCTGTTGAT+GGG 0.557506 tig0026409:-63609 None:intergenic
TGAGGAGAAGACTCCATCAC+GGG 0.558881 tig0026409:+60653 Msa1428780:CDS
CATCTCAACATGTTGTGAGC+CGG 0.561847 tig0026409:-65207 None:intergenic
TCATTGAATGAACCGTTGCT+GGG 0.564464 tig0026409:+60724 Msa1428780:CDS
CTGAGCATCCATCATTTGAA+AGG 0.566308 tig0026409:-64972 None:intergenic
GACTGAGAAACTTAAAGCAA+CGG 0.567027 tig0026409:+62754 Msa1428780:three_prime_UTR
ATGTACGCTTGAAGATTTGT+GGG 0.575791 tig0026409:+60874 Msa1428780:CDS
TGGAAGGAAATGGGATGGCA+AGG 0.585634 tig0026409:+63580 Msa1428780:three_prime_UTR
GGATGTCGATGGAAAACGGC+AGG 0.585718 tig0026409:+60675 Msa1428780:CDS
AAAATAAAGAAATAAATGAA+AGG 0.593271 tig0026409:-60014 None:intergenic
GTGGGATGATGAGAGAAAGA+AGG 0.593292 tig0026409:+60892 Msa1428780:CDS
ACAGCTCAAACGTGTGCTGT+GGG 0.595203 tig0026409:-59959 None:intergenic
AACAAATGCTTAAATAAAAG+GGG 0.595384 tig0026409:-65398 None:intergenic
TGATTATATTGAGAGTAAGA+AGG 0.599715 tig0026409:+60753 Msa1428780:CDS
ATTTAAGTGGAGGAAGCTCT+CGG 0.606705 tig0026409:-63549 None:intergenic
ACTTAAATCAGATTGTTGGA+AGG 0.607130 tig0026409:+63564 Msa1428780:three_prime_UTR
AGATGGAATCCGAGCAGAGT+GGG 0.614159 tig0026409:+64262 Msa1428780:three_prime_UTR
TGTAAATCACAAGTGAAATG+GGG 0.618313 tig0026409:+65336 Msa1428780:three_prime_UTR
TAATCATCACCTCCCAGCAA+CGG 0.628970 tig0026409:-60736 None:intergenic
ACTGTGCCCATTGCGCAATG+AGG 0.645478 tig0026409:-60946 None:intergenic
ATTGTTGGAAGGAAATGGGA+TGG 0.650850 tig0026409:+63575 Msa1428780:three_prime_UTR
GTAAATCACAAGTGAAATGG+GGG 0.654503 tig0026409:+65337 Msa1428780:three_prime_UTR
TTGAGGAGAAGACTCCATCA+CGG 0.656992 tig0026409:+60652 Msa1428780:CDS
TTCAAATGATGGATGCTCAG+TGG 0.679437 tig0026409:+64975 Msa1428780:three_prime_UTR
TCTCTATACATACCTGCACA+GGG 0.703300 tig0026409:-62021 None:intergenic
GAGGAGAAGACTCCATCACG+GGG 0.729277 tig0026409:+60654 Msa1428780:CDS
AAGATGGAATCCGAGCAGAG+TGG 0.735731 tig0026409:+64261 Msa1428780:three_prime_UTR
TCATTGCGCAATGGGCACAG+TGG 0.737416 tig0026409:+60948 Msa1428780:CDS
TTGAATGAACCGTTGCTGGG+AGG 0.740209 tig0026409:+60727 Msa1428780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - tig0026409:62864-62883 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - tig0026409:62865-62884 None:intergenic 0.0%
!! AAAATAAAGAAATAAATGAA+AGG - tig0026409:60017-60036 None:intergenic 10.0%
!!! AATAACTGAATTTTTCAAAA+GGG - tig0026409:60297-60316 None:intergenic 15.0%
!!! AAATAACTGAATTTTTCAAA+AGG - tig0026409:60298-60317 None:intergenic 15.0%
!! ATACTATAATTCTTTACTAT+AGG - tig0026409:60615-60634 None:intergenic 15.0%
!! TAAGAATTGAATAAAAATCA+TGG - tig0026409:61741-61760 None:intergenic 15.0%
!! TATATATATAAGACAAATGT+CGG - tig0026409:62854-62873 None:intergenic 15.0%
!!! TATTTTTAATATCTGAATTG+TGG + tig0026409:63263-63282 Msa1428780:intron 15.0%
!!! ATTTTTAATATCTGAATTGT+GGG + tig0026409:63264-63283 Msa1428780:intron 15.0%
!!! TGTTTAATTGTTTTACTTTA+AGG + tig0026409:63630-63649 Msa1428780:intron 15.0%
!! AGAAATATTAAATGTATCTT+AGG - tig0026409:64771-64790 None:intergenic 15.0%
!!! AAAATTTTGCTATTTTCTTT+AGG + tig0026409:65110-65129 Msa1428780:intron 15.0%
!!! AAAATTTTCTAACTACAAAA+TGG - tig0026409:65267-65286 None:intergenic 15.0%
!! TAACAAATGCTTAAATAAAA+GGG - tig0026409:65402-65421 None:intergenic 15.0%
!!! CCAATTTTAAACAATTTTTA+GGG - tig0026409:65604-65623 None:intergenic 15.0%
!!! TCCAATTTTAAACAATTTTT+AGG - tig0026409:65605-65624 None:intergenic 15.0%
!! GAAGTAACAAACAAAAATTA+GGG - tig0026409:60112-60131 None:intergenic 20.0%
!! TTCAAATCAAGAAAAACAAA+GGG - tig0026409:60188-60207 None:intergenic 20.0%
!! ATTCAAATCAAGAAAAACAA+AGG - tig0026409:60189-60208 None:intergenic 20.0%
!!! GTTTTTCTTGATTTGAATTT+CGG + tig0026409:60191-60210 Msa1428780:intron 20.0%
!! AAACTAACTGAATTTCAAAA+GGG - tig0026409:60369-60388 None:intergenic 20.0%
!! TGTTTATCAAAATCTGAAAA+TGG + tig0026409:60428-60447 Msa1428780:intron 20.0%
!!! AAATATATTAAAGTGTTAGC+TGG + tig0026409:60478-60497 Msa1428780:intron 20.0%
!!! TGTATTTTTTTGACTTGTAT+AGG + tig0026409:60585-60604 Msa1428780:intron 20.0%
!! TATTAGTGTACTACATATTA+GGG + tig0026409:61397-61416 Msa1428780:intron 20.0%
!! ATCAAAATGACAAAAAAATG+TGG - tig0026409:61629-61648 None:intergenic 20.0%
!! AAATAAGAAGAAAATGCAAA+TGG + tig0026409:61839-61858 Msa1428780:intron 20.0%
!!! TATTGTTTTGCAAGTAAAAA+CGG - tig0026409:61979-61998 None:intergenic 20.0%
!! GTTAAACTTAAAGTTGAAAT+TGG - tig0026409:62095-62114 None:intergenic 20.0%
!!! ATCAATTGTATTTTCAGATA+GGG - tig0026409:62117-62136 None:intergenic 20.0%
!!! ATATCATTTTCAAAAGACAA+AGG - tig0026409:62215-62234 None:intergenic 20.0%
!!! CTTTTGATTATAAATATCAC+AGG - tig0026409:62490-62509 None:intergenic 20.0%
!!! GAACAATCAATTTTAAATTG+TGG + tig0026409:62519-62538 Msa1428780:intron 20.0%
!! GATAATTATTGTTTGATATG+AGG - tig0026409:62566-62585 None:intergenic 20.0%
!! TATTTCTTTCTTTCTTTCTT+AGG + tig0026409:62725-62744 Msa1428780:intron 20.0%
!! AAATGCATTAAATACATACT+TGG - tig0026409:62815-62834 None:intergenic 20.0%
!!! TTTATTTATTTCTTTGTTGC+AGG + tig0026409:63489-63508 Msa1428780:intron 20.0%
!!! AAGTATTCTTTAGAAATACT+TGG + tig0026409:63881-63900 Msa1428780:intron 20.0%
!! TAATTTCAAAAAAACAGAGT+TGG - tig0026409:64005-64024 None:intergenic 20.0%
!!! CTGTTTTTTTGAAATTATGA+AGG + tig0026409:64008-64027 Msa1428780:intron 20.0%
!! TATACATACAAATGCAAATA+CGG - tig0026409:64132-64151 None:intergenic 20.0%
!! TTTAATTACTAAGCACATTA+TGG - tig0026409:64164-64183 None:intergenic 20.0%
!! TAATGTGCTTAGTAATTAAA+TGG + tig0026409:64164-64183 Msa1428780:intron 20.0%
!! AATCAATATCTCATTTATGT+TGG + tig0026409:64307-64326 Msa1428780:three_prime_UTR 20.0%
!!! GTGTTATTATGTTTTTAGAT+TGG - tig0026409:64505-64524 None:intergenic 20.0%
!!! TACATTTAATATTTCTGTAG+CGG + tig0026409:64775-64794 Msa1428780:intron 20.0%
!!! ATGATTTTACATGAAAAATG+AGG - tig0026409:64844-64863 None:intergenic 20.0%
!! AACAAATGCTTAAATAAAAG+GGG - tig0026409:65401-65420 None:intergenic 20.0%
!! CTAACAAATGCTTAAATAAA+AGG - tig0026409:65403-65422 None:intergenic 20.0%
!! TCACAAAAGTTGTTAAAAAT+TGG - tig0026409:65485-65504 None:intergenic 20.0%
!!! CCCTAAAAATTGTTTAAAAT+TGG + tig0026409:65601-65620 Msa1428780:intron 20.0%
!! AAAATTGTAATTGTTGAAAG+AGG - tig0026409:65643-65662 None:intergenic 20.0%
! CGAAGTAACAAACAAAAATT+AGG - tig0026409:60113-60132 None:intergenic 25.0%
! GATTTGAATTTCGGTTTATT+CGG + tig0026409:60200-60219 Msa1428780:intron 25.0%
! GGTTAAATTTGTCAACTTTA+GGG + tig0026409:60251-60270 Msa1428780:intron 25.0%
!!! CAATTTTTGAGTAATTGAAC+AGG + tig0026409:60342-60361 Msa1428780:intron 25.0%
! CAAACTAACTGAATTTCAAA+AGG - tig0026409:60370-60389 None:intergenic 25.0%
! TAATGTCTTCAAAAACATTG+AGG + tig0026409:60635-60654 Msa1428780:exon 25.0%
! TGATTATATTGAGAGTAAGA+AGG + tig0026409:60753-60772 Msa1428780:CDS 25.0%
!!! AATCGTCGTTATTTTGTATT+TGG + tig0026409:60781-60800 Msa1428780:intron 25.0%
! TAGTGAAAAACAATGTTAGA+TGG + tig0026409:61064-61083 Msa1428780:intron 25.0%
!! TTTTCCGTTAGTAATAGTTA+TGG + tig0026409:61127-61146 Msa1428780:intron 25.0%
! AAAAGAATCATTCTTAGGAT+TGG + tig0026409:61256-61275 Msa1428780:intron 25.0%
! GTATTAGTGTACTACATATT+AGG + tig0026409:61396-61415 Msa1428780:intron 25.0%
!! GTTTTTACTTGCAAAACAAT+AGG + tig0026409:61978-61997 Msa1428780:CDS 25.0%
!! TGAAATTGGTTACATGATTT+TGG - tig0026409:62081-62100 None:intergenic 25.0%
!! GATCAATTGTATTTTCAGAT+AGG - tig0026409:62118-62137 None:intergenic 25.0%
!!! AACACTTACTTGATAATGAT+AGG + tig0026409:62268-62287 Msa1428780:intron 25.0%
! TAATGATAGGATATTATCAC+TGG + tig0026409:62281-62300 Msa1428780:intron 25.0%
!! GGAGTTTGATGATATATATT+TGG + tig0026409:62386-62405 Msa1428780:intron 25.0%
!! GAAAACAACGAGTAATTTTA+TGG - tig0026409:62428-62447 None:intergenic 25.0%
! ATAAAAGACACCTTCATAAA+AGG + tig0026409:63047-63066 Msa1428780:intron 25.0%
! TATAACAAAATGGTATCAAG+AGG - tig0026409:63191-63210 None:intergenic 25.0%
!! GACATGTATAGCAATTTTAT+TGG - tig0026409:63345-63364 None:intergenic 25.0%
!!! ATTGTTTTACTTTAAGGAGA+TGG + tig0026409:63636-63655 Msa1428780:intron 25.0%
!!! TTGTTTTACTTTAAGGAGAT+GGG + tig0026409:63637-63656 Msa1428780:intron 25.0%
!!! AGGATTCATTGACTTAATAA+TGG + tig0026409:63715-63734 Msa1428780:intron 25.0%
!!! GGATTCATTGACTTAATAAT+GGG + tig0026409:63716-63735 Msa1428780:intron 25.0%
! GAATACTTGTGACATATATA+TGG - tig0026409:63869-63888 None:intergenic 25.0%
! ACTAAAAGTTTCATCAAACT+TGG + tig0026409:63964-63983 Msa1428780:intron 25.0%
! CTAAAAGTTTCATCAAACTT+GGG + tig0026409:63965-63984 Msa1428780:intron 25.0%
!! TTTCAACCATTATTTTCACT+CGG - tig0026409:64528-64547 None:intergenic 25.0%
! AATAATGGTTGAAATCAAGT+TGG + tig0026409:64534-64553 Msa1428780:intron 25.0%
! CCAAACATAATAAATGAATG+TGG - tig0026409:64610-64629 None:intergenic 25.0%
! CCACATTCATTTATTATGTT+TGG + tig0026409:64607-64626 Msa1428780:intron 25.0%
! ATTAAACTGTGTTTGTTCAT+TGG + tig0026409:65041-65060 Msa1428780:intron 25.0%
! TTATTAGCATTATTCTGTGA+TGG + tig0026409:65073-65092 Msa1428780:intron 25.0%
! GAATACTTTACATACACTTA+AGG - tig0026409:65291-65310 None:intergenic 25.0%
! ATGTAAATCACAAGTGAAAT+GGG + tig0026409:65335-65354 Msa1428780:three_prime_UTR 25.0%
! CAGAAGATTATTCTGATATT+TGG - tig0026409:65365-65384 None:intergenic 25.0%
!! AAGTTTATGTTTTCAACAAG+AGG + tig0026409:65443-65462 Msa1428780:intron 25.0%
! AAAAGGAAGAAAGAGAATAA+AGG - tig0026409:65534-65553 None:intergenic 25.0%
! ATAACAATAGAGAGAGAAAA+AGG - tig0026409:65551-65570 None:intergenic 25.0%
!! TTGTTATTGTCCAATAAGAA+TGG + tig0026409:65564-65583 Msa1428780:intron 25.0%
GGGTTAAATTTGTCAACTTT+AGG + tig0026409:60250-60269 Msa1428780:intron 30.0%
TTGATAAACACCAAACCATA+GGG - tig0026409:60418-60437 None:intergenic 30.0%
TTTGATAAACACCAAACCAT+AGG - tig0026409:60419-60438 None:intergenic 30.0%
! TTCTTGAACTTGATGGTTAT+GGG + tig0026409:60551-60570 Msa1428780:intron 30.0%
!! GTCGTTATTTTGTATTTGGA+GGG + tig0026409:60785-60804 Msa1428780:intron 30.0%
CGAATAAAATCCTATTCCAA+TGG + tig0026409:61152-61171 Msa1428780:intron 30.0%
CATAAGACTTCAGATTCATA+GGG - tig0026409:61221-61240 None:intergenic 30.0%
ACATAAGACTTCAGATTCAT+AGG - tig0026409:61222-61241 None:intergenic 30.0%
AAATGACAAAAAAATGTGGC+TGG - tig0026409:61625-61644 None:intergenic 30.0%
TTTCACAAGCTACATAAATG+AGG - tig0026409:61767-61786 None:intergenic 30.0%
! TATGTAGCTTGTGAAAAATC+CGG + tig0026409:61771-61790 Msa1428780:intron 30.0%
! CTATTTTCTTCATTGTTGAC+TGG + tig0026409:61811-61830 Msa1428780:intron 30.0%
TTACTTGCAAAACAATAGGA+TGG + tig0026409:61982-62001 Msa1428780:exon 30.0%
! CATTTTCAAAAGACAAAGGA+TGG - tig0026409:62211-62230 None:intergenic 30.0%
CACGTGATCTTTAGTTAAAA+AGG - tig0026409:62453-62472 None:intergenic 30.0%
AAATGTCGGTAATGTGATTA+GGG - tig0026409:62840-62859 None:intergenic 30.0%
! TTTTATCAAGTCACACCTTA+AGG + tig0026409:62932-62951 Msa1428780:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - tig0026409:62950-62969 None:intergenic 30.0%
!! AAAGACACCAACTTACTTTT+AGG - tig0026409:63002-63021 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG - tig0026409:63060-63079 None:intergenic 30.0%
! AGAGCATCACTATAACAAAA+TGG - tig0026409:63201-63220 None:intergenic 30.0%
TAATATCTGAATTGTGGGTA+CGG + tig0026409:63269-63288 Msa1428780:intron 30.0%
! TCTTTTACAACTGTGGAAAT+TGG + tig0026409:63516-63535 Msa1428780:three_prime_UTR 30.0%
TTCCAACAATCTGATTTAAG+TGG - tig0026409:63565-63584 None:intergenic 30.0%
ACTTAAATCAGATTGTTGGA+AGG + tig0026409:63564-63583 Msa1428780:three_prime_UTR 30.0%
!! TGTTTTACTTTAAGGAGATG+GGG + tig0026409:63638-63657 Msa1428780:intron 30.0%
TACTGTAAGACCATTAAGTA+AGG + tig0026409:63695-63714 Msa1428780:intron 30.0%
GTCAATGAATCCTTACTTAA+TGG - tig0026409:63708-63727 None:intergenic 30.0%
!! TTCATTGACTTAATAATGGG+AGG + tig0026409:63719-63738 Msa1428780:intron 30.0%
GATGTATGTCAAACCTATAA+GGG - tig0026409:63763-63782 None:intergenic 30.0%
AGATGTATGTCAAACCTATA+AGG - tig0026409:63764-63783 None:intergenic 30.0%
ACATACATCTACTTGTTTGA+TGG + tig0026409:63774-63793 Msa1428780:intron 30.0%
!! CTTGTTTGATGGTTTGATTT+TGG + tig0026409:63785-63804 Msa1428780:intron 30.0%
!!! TGGTTTGATTTTGGTTCTTT+AGG + tig0026409:63794-63813 Msa1428780:intron 30.0%
!!! GGTTTGATTTTGGTTCTTTA+GGG + tig0026409:63795-63814 Msa1428780:intron 30.0%
!!! GTTTGATTTTGGTTCTTTAG+GGG + tig0026409:63796-63815 Msa1428780:intron 30.0%
GACATATATATGGTACATGT+GGG - tig0026409:63859-63878 None:intergenic 30.0%
TGACATATATATGGTACATG+TGG - tig0026409:63860-63879 None:intergenic 30.0%
! AGTCTTTATAAAGAGTATGC+AGG - tig0026409:63943-63962 None:intergenic 30.0%
AATTCTCTTGAGAAATTCAG+TGG + tig0026409:64362-64381 Msa1428780:intron 30.0%
! TTCAACCATTATTTTCACTC+GGG - tig0026409:64527-64546 None:intergenic 30.0%
! ATCAACACTTGCTGAAAATA+AGG - tig0026409:64807-64826 None:intergenic 30.0%
CTCCAGTATAAAAGATATAC+CGG + tig0026409:65188-65207 Msa1428780:three_prime_UTR 30.0%
!! TGCTCATTTTAGTGTAACAT+TGG + tig0026409:65235-65254 Msa1428780:three_prime_UTR 30.0%
CATGTAAATCACAAGTGAAA+TGG + tig0026409:65334-65353 Msa1428780:three_prime_UTR 30.0%
TGTAAATCACAAGTGAAATG+GGG + tig0026409:65336-65355 Msa1428780:three_prime_UTR 30.0%
TTATTGTCCAATAAGAATGG+AGG + tig0026409:65567-65586 Msa1428780:intron 30.0%
!!! CTTTTTTCCTCCATTCTTAT+TGG - tig0026409:65577-65596 None:intergenic 30.0%
! TACACTTTTCGTGCTTCATA+AGG - tig0026409:60054-60073 None:intergenic 35.0%
GAATTTCGGTTTATTCGGTT+TGG + tig0026409:60205-60224 Msa1428780:intron 35.0%
TTTCAGTTGAGAGGTGAAAA+TGG + tig0026409:60228-60247 Msa1428780:intron 35.0%
TTCAGTTGAGAGGTGAAAAT+GGG + tig0026409:60229-60248 Msa1428780:intron 35.0%
!! TGTTGATTTGAGTAACCCTA+TGG + tig0026409:60400-60419 Msa1428780:intron 35.0%
ATTTGAGTAACCCTATGGTT+TGG + tig0026409:60405-60424 Msa1428780:intron 35.0%
GGAGTGATGAATGAAAAGAA+TGG + tig0026409:60499-60518 Msa1428780:intron 35.0%
GATGATGTTCTTGAACTTGA+TGG + tig0026409:60544-60563 Msa1428780:intron 35.0%
! GTTCTTGAACTTGATGGTTA+TGG + tig0026409:60550-60569 Msa1428780:intron 35.0%
!! CGTCGTTATTTTGTATTTGG+AGG + tig0026409:60784-60803 Msa1428780:intron 35.0%
TATGTACGCTTGAAGATTTG+TGG + tig0026409:60873-60892 Msa1428780:CDS 35.0%
ATGTACGCTTGAAGATTTGT+GGG + tig0026409:60874-60893 Msa1428780:CDS 35.0%
AGGTATGTTTACGATTGAGT+TGG + tig0026409:60973-60992 Msa1428780:intron 35.0%
TAGTTCATACGTTCTATGCT+TGG + tig0026409:61092-61111 Msa1428780:intron 35.0%
CGCTCCATAACTATTACTAA+CGG - tig0026409:61134-61153 None:intergenic 35.0%
! CTGAAGTCTTATGTTTAGAG+TGG + tig0026409:61228-61247 Msa1428780:intron 35.0%
! AAGTCTTATGTTTAGAGTGG+CGG + tig0026409:61231-61250 Msa1428780:intron 35.0%
CGGCTAAAAGAATCATTCTT+AGG + tig0026409:61251-61270 Msa1428780:intron 35.0%
GTATTAGTGGAGTGAATTGA+TGG + tig0026409:61310-61329 Msa1428780:intron 35.0%
! AATTGGCACTGAACTTTATG+AGG + tig0026409:61348-61367 Msa1428780:intron 35.0%
! ATTGGCACTGAACTTTATGA+GGG + tig0026409:61349-61368 Msa1428780:intron 35.0%
ATTAGGGTTGAATCTCACTA+AGG + tig0026409:61413-61432 Msa1428780:intron 35.0%
! GGCTGGCTATACAAAATTTA+GGG - tig0026409:61608-61627 None:intergenic 35.0%
! TGGCTGGCTATACAAAATTT+AGG - tig0026409:61609-61628 None:intergenic 35.0%
! ATGTAGCTTGTGAAAAATCC+GGG + tig0026409:61772-61791 Msa1428780:intron 35.0%
AGAGATATATACGTAAGACC+CGG - tig0026409:61793-61812 None:intergenic 35.0%
! TAGAACAATGTTTGCTGCAA+AGG - tig0026409:61914-61933 None:intergenic 35.0%
TTTGCAGCAAACATTGTTCT+AGG + tig0026409:61913-61932 Msa1428780:intron 35.0%
TTGCAGCAAACATTGTTCTA+GGG + tig0026409:61914-61933 Msa1428780:intron 35.0%
! TGTGATGGAGTTCAATTCAA+AGG - tig0026409:62175-62194 None:intergenic 35.0%
TTTGAAAATGATATGCTGCC+AGG + tig0026409:62221-62240 Msa1428780:intron 35.0%
TTGAAAATGATATGCTGCCA+GGG + tig0026409:62222-62241 Msa1428780:intron 35.0%
ATCACAAATCAGAATATCCC+TGG - tig0026409:62242-62261 None:intergenic 35.0%
! TACCTCACTGTATTGTGTTT+TGG + tig0026409:62333-62352 Msa1428780:intron 35.0%
TTCCAAAACACAATACAGTG+AGG - tig0026409:62338-62357 None:intergenic 35.0%
!! TCACTGTATTGTGTTTTGGA+AGG + tig0026409:62337-62356 Msa1428780:intron 35.0%
! GAACTTCTGTAGTCTCTTTT+TGG + tig0026409:62639-62658 Msa1428780:intron 35.0%
TCTCAATAATCTGCTACATG+TGG + tig0026409:62684-62703 Msa1428780:intron 35.0%
GACTGAGAAACTTAAAGCAA+CGG + tig0026409:62754-62773 Msa1428780:three_prime_UTR 35.0%
!!! TCTGTTTTAGAACCGTCAAA+GGG - tig0026409:62789-62808 None:intergenic 35.0%
!!! ATCTGTTTTAGAACCGTCAA+AGG - tig0026409:62790-62809 None:intergenic 35.0%
CAAATGTCGGTAATGTGATT+AGG - tig0026409:62841-62860 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - tig0026409:62920-62939 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - tig0026409:62921-62940 None:intergenic 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + tig0026409:62992-63011 Msa1428780:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG - tig0026409:62998-63017 None:intergenic 35.0%
AAATTGAACAGGCAGAATAC+AGG - tig0026409:63148-63167 None:intergenic 35.0%
AAATGACAGCGAAATTGAAC+AGG - tig0026409:63159-63178 None:intergenic 35.0%
AATATCTGAATTGTGGGTAC+GGG + tig0026409:63270-63289 Msa1428780:intron 35.0%
! ACGGGGTGTCAATTTATAAA+TGG + tig0026409:63288-63307 Msa1428780:intron 35.0%
ATAAATGGAATGTCCTTCCA+TGG + tig0026409:63303-63322 Msa1428780:intron 35.0%
CCTTTAAATTCATCCATGGA+AGG - tig0026409:63319-63338 None:intergenic 35.0%
CCTTCCATGGATGAATTTAA+AGG + tig0026409:63316-63335 Msa1428780:intron 35.0%
GTCACCTTTAAATTCATCCA+TGG - tig0026409:63323-63342 None:intergenic 35.0%
AGATGCTCAAAAGCAAGATA+TGG - tig0026409:63394-63413 None:intergenic 35.0%
CAACAATCTGATTTAAGTGG+AGG - tig0026409:63562-63581 None:intergenic 35.0%
CTCCACTTAAATCAGATTGT+TGG + tig0026409:63560-63579 Msa1428780:three_prime_UTR 35.0%
ATCAGATTGTTGGAAGGAAA+TGG + tig0026409:63570-63589 Msa1428780:three_prime_UTR 35.0%
TCAGATTGTTGGAAGGAAAT+GGG + tig0026409:63571-63590 Msa1428780:three_prime_UTR 35.0%
CACACCTAAAATCTGTTGAT+GGG - tig0026409:63612-63631 None:intergenic 35.0%
ACACACCTAAAATCTGTTGA+TGG - tig0026409:63613-63632 None:intergenic 35.0%
CTCTAACCTTATCCATATTC+AGG - tig0026409:63669-63688 None:intergenic 35.0%
CAAAATAGTCTGACCCTTAT+AGG + tig0026409:63747-63766 Msa1428780:intron 35.0%
ATACGGTAGAAGAAACTTAC+TGG - tig0026409:64115-64134 None:intergenic 35.0%
CGATTATTGCACAAACAAGA+TGG + tig0026409:64245-64264 Msa1428780:three_prime_UTR 35.0%
TAACACCCGAGTGAAAATAA+TGG + tig0026409:64519-64538 Msa1428780:intron 35.0%
AGGGAACTGTATAGATAGTT+TGG + tig0026409:64675-64694 Msa1428780:intron 35.0%
GGGAACTGTATAGATAGTTT+GGG + tig0026409:64676-64695 Msa1428780:intron 35.0%
! CTAGTTAGATAAGGTTTGGT+TGG - tig0026409:64734-64753 None:intergenic 35.0%
CAACCAAACCTTATCTAACT+AGG + tig0026409:64732-64751 Msa1428780:intron 35.0%
TTGCATTGCCTTTCAAATGA+TGG + tig0026409:64964-64983 Msa1428780:three_prime_UTR 35.0%
! CGGTATATCTTTTATACTGG+AGG - tig0026409:65190-65209 None:intergenic 35.0%
! AGCCGGTATATCTTTTATAC+TGG - tig0026409:65193-65212 None:intergenic 35.0%
GTAAATCACAAGTGAAATGG+GGG + tig0026409:65337-65356 Msa1428780:three_prime_UTR 35.0%
ACGAGTGAAACGAATCTCTT+TGG - tig0026409:60142-60161 None:intergenic 40.0%
CGTTTCACTCGTTGAAATTC+AGG + tig0026409:60150-60169 Msa1428780:five_prime_UTR 40.0%
TCAGTTGAGAGGTGAAAATG+GGG + tig0026409:60230-60249 Msa1428780:intron 40.0%
CAGGAACATTTGGATACTTC+TGG + tig0026409:60694-60713 Msa1428780:CDS 40.0%
TTCATTGAATGAACCGTTGC+TGG + tig0026409:60723-60742 Msa1428780:CDS 40.0%
TCATTGAATGAACCGTTGCT+GGG + tig0026409:60724-60743 Msa1428780:CDS 40.0%
! GAAAGAAGGCGCAAATTCAT+TGG + tig0026409:60906-60925 Msa1428780:CDS 40.0%
!! CGTTCTATGCTTGGTTTTTG+TGG + tig0026409:61101-61120 Msa1428780:intron 40.0%
AGTGGCAAATCCATTGGAAT+AGG - tig0026409:61165-61184 None:intergenic 40.0%
ATTTGCCACTCTTGCAAACA+AGG + tig0026409:61175-61194 Msa1428780:intron 40.0%
! ACTTTCCTTGTTTGCAAGAG+TGG - tig0026409:61183-61202 None:intergenic 40.0%
! GTATGATCAAGCACGTCTTT+TGG + tig0026409:61278-61297 Msa1428780:intron 40.0%
TTAGTGGAGTGAATTGATGG+AGG + tig0026409:61313-61332 Msa1428780:intron 40.0%
! TTTATGAGGGTGCAATCACA+AGG + tig0026409:61362-61381 Msa1428780:intron 40.0%
! TGCAAATGGCATGCTTTTAG+TGG + tig0026409:61853-61872 Msa1428780:intron 40.0%
TCTCTATACATACCTGCACA+GGG - tig0026409:62024-62043 None:intergenic 40.0%
ATCTCTATACATACCTGCAC+AGG - tig0026409:62025-62044 None:intergenic 40.0%
ACAAAGGATGGTTGAGTTAC+GGG - tig0026409:62199-62218 None:intergenic 40.0%
GACAAAGGATGGTTGAGTTA+CGG - tig0026409:62200-62219 None:intergenic 40.0%
AGACTACAGAAGTTCAGCAA+AGG - tig0026409:62634-62653 None:intergenic 40.0%
!!! CTGTAGTCTCTTTTTGGAGT+TGG + tig0026409:62645-62664 Msa1428780:intron 40.0%
TTATGTTACAAGCCACCCTT+TGG + tig0026409:62902-62921 Msa1428780:intron 40.0%
ATATCTGAATTGTGGGTACG+GGG + tig0026409:63271-63290 Msa1428780:intron 40.0%
ATTTAAGTGGAGGAAGCTCT+CGG - tig0026409:63552-63571 None:intergenic 40.0%
ATTGTTGGAAGGAAATGGGA+TGG + tig0026409:63575-63594 Msa1428780:three_prime_UTR 40.0%
! CAGACCCATCAACAGATTTT+AGG + tig0026409:63605-63624 Msa1428780:three_prime_UTR 40.0%
! TTTACTTTAAGGAGATGGGG+AGG + tig0026409:63641-63660 Msa1428780:intron 40.0%
! TTACTTTAAGGAGATGGGGA+GGG + tig0026409:63642-63661 Msa1428780:intron 40.0%
CCCAAAAACTAGCTCAAGAA+GGG - tig0026409:63917-63936 None:intergenic 40.0%
!!! CCCTTCTTGAGCTAGTTTTT+GGG + tig0026409:63914-63933 Msa1428780:intron 40.0%
GAGCTCATTAGATCTAACCA+TGG + tig0026409:64030-64049 Msa1428780:intron 40.0%
! TAGATCTAACCATGGTTTGC+AGG + tig0026409:64038-64057 Msa1428780:intron 40.0%
! AGATCTAACCATGGTTTGCA+GGG + tig0026409:64039-64058 Msa1428780:intron 40.0%
ACTTCTGCGCAAAAAAGATG+AGG - tig0026409:64090-64109 None:intergenic 40.0%
TAGCCTACCACATTTCTACT+TGG + tig0026409:64199-64218 Msa1428780:intron 40.0%
TTGCCAAGTAGAAATGTGGT+AGG - tig0026409:64205-64224 None:intergenic 40.0%
TTTCTACTTGGCAATGCCAT+AGG + tig0026409:64211-64230 Msa1428780:intron 40.0%
CTTGTTTGTGCAATAATCGC+TGG - tig0026409:64244-64263 None:intergenic 40.0%
GAATATCCATTTGCAGTAGC+TGG + tig0026409:64284-64303 Msa1428780:three_prime_UTR 40.0%
TTGATTCCAGCTACTGCAAA+TGG - tig0026409:64293-64312 None:intergenic 40.0%
ATTTATGTTGGTGCAGATGC+TGG + tig0026409:64319-64338 Msa1428780:three_prime_UTR 40.0%
GACCATATCTCATCCAATGT+GGG - tig0026409:64414-64433 None:intergenic 40.0%
AGACCATATCTCATCCAATG+TGG - tig0026409:64415-64434 None:intergenic 40.0%
AAAACAAGCGTACGAGATAG+AGG - tig0026409:64465-64484 None:intergenic 40.0%
!!! CTTGTTTTGTTACGATGAGC+TGG + tig0026409:64477-64496 Msa1428780:intron 40.0%
GACTCGATTGTACTTTGCAA+TGG - tig0026409:64637-64656 None:intergenic 40.0%
ACTATCTATACAGTTCCCTG+AGG - tig0026409:64674-64693 None:intergenic 40.0%
CCACCTAGTTAGATAAGGTT+TGG - tig0026409:64738-64757 None:intergenic 40.0%
CCAAACCTTATCTAACTAGG+TGG + tig0026409:64735-64754 Msa1428780:intron 40.0%
GTTCTCCACCTAGTTAGATA+AGG - tig0026409:64743-64762 None:intergenic 40.0%
AGAAGATGGAACAACTGCAA+CGG - tig0026409:64882-64901 None:intergenic 40.0%
AGTTGTTCCATCTTCTTCGT+CGG + tig0026409:64886-64905 Msa1428780:intron 40.0%
! CGTCGGGAATATGTTTTCTA+CGG + tig0026409:64903-64922 Msa1428780:three_prime_UTR 40.0%
CTGAGCATCCATCATTTGAA+AGG - tig0026409:64975-64994 None:intergenic 40.0%
!! TTCAAATGATGGATGCTCAG+TGG + tig0026409:64975-64994 Msa1428780:three_prime_UTR 40.0%
AGCAAAGCGTGCTACATATA+TGG + tig0026409:65000-65019 Msa1428780:three_prime_UTR 40.0%
!! TCGGTTTGGTTTCAGTTGAG+AGG + tig0026409:60219-60238 Msa1428780:intron 45.0%
TTGAGGAGAAGACTCCATCA+CGG + tig0026409:60652-60671 Msa1428780:CDS 45.0%
TGGAAAACGGCAGGAACATT+TGG + tig0026409:60684-60703 Msa1428780:CDS 45.0%
TAATCATCACCTCCCAGCAA+CGG - tig0026409:60739-60758 None:intergenic 45.0%
GTGGGATGATGAGAGAAAGA+AGG + tig0026409:60892-60911 Msa1428780:CDS 45.0%
TTTCGAACCTCATTGCGCAA+TGG + tig0026409:60939-60958 Msa1428780:CDS 45.0%
TTCGAACCTCATTGCGCAAT+GGG + tig0026409:60940-60959 Msa1428780:CDS 45.0%
TGCAAGAGTGGCAAATCCAT+TGG - tig0026409:61171-61190 None:intergenic 45.0%
!!! AAGCACGTCTTTTGGAGCTT+GGG + tig0026409:61286-61305 Msa1428780:intron 45.0%
!! TTGGAGCTTGGGAGTATTAG+TGG + tig0026409:61297-61316 Msa1428780:intron 45.0%
TGGAGTGAATTGATGGAGGA+GGG + tig0026409:61317-61336 Msa1428780:intron 45.0%
GGAGGAGGGTGATTGAAAAT+TGG + tig0026409:61331-61350 Msa1428780:intron 45.0%
!! GCAAACATTGTTCTAGGGTC+TGG + tig0026409:61919-61938 Msa1428780:intron 45.0%
CAAAGGATGGTTGAGTTACG+GGG - tig0026409:62198-62217 None:intergenic 45.0%
! CAGTGAGGTATTCGAGAAAC+TGG - tig0026409:62323-62342 None:intergenic 45.0%
!!! TGTGTTTTGGAAGGCATCAG+TGG + tig0026409:62346-62365 Msa1428780:intron 45.0%
!!! GTGTTTTGGAAGGCATCAGT+GGG + tig0026409:62347-62366 Msa1428780:intron 45.0%
GTGGGCAACGGATATTTCTT+TGG + tig0026409:62365-62384 Msa1428780:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - tig0026409:62917-62936 None:intergenic 45.0%
! AGGACGCTCTTTTACAACTG+TGG + tig0026409:63509-63528 Msa1428780:intron 45.0%
! TACTTTAAGGAGATGGGGAG+GGG + tig0026409:63643-63662 Msa1428780:intron 45.0%
!!! GCCCTTCTTGAGCTAGTTTT+TGG + tig0026409:63913-63932 Msa1428780:intron 45.0%
GCCCAAAAACTAGCTCAAGA+AGG - tig0026409:63918-63937 None:intergenic 45.0%
! GATCTAACCATGGTTTGCAG+GGG + tig0026409:64040-64059 Msa1428780:intron 45.0%
GGCATTGCCAAGTAGAAATG+TGG - tig0026409:64209-64228 None:intergenic 45.0%
AATCGCTGGAATGAGACCTA+TGG - tig0026409:64230-64249 None:intergenic 45.0%
ATGGATATTCCCACTCTGCT+CGG - tig0026409:64274-64293 None:intergenic 45.0%
CAGATGCTGGATCTTCAATC+AGG + tig0026409:64332-64351 Msa1428780:three_prime_UTR 45.0%
ACATGTTGAGAGTCCCACAT+TGG + tig0026409:64398-64417 Msa1428780:intron 45.0%
GTCCCACATTGGATGAGATA+TGG + tig0026409:64409-64428 Msa1428780:intron 45.0%
AAGATGGAACAACTGCAACG+GGG - tig0026409:64880-64899 None:intergenic 45.0%
GAAGATGGAACAACTGCAAC+GGG - tig0026409:64881-64900 None:intergenic 45.0%
GTTGTTCCATCTTCTTCGTC+GGG + tig0026409:64887-64906 Msa1428780:intron 45.0%
CATATTCCCGACGAAGAAGA+TGG - tig0026409:64896-64915 None:intergenic 45.0%
! ATGTTTTCTACGGCTGCTTG+AGG + tig0026409:64913-64932 Msa1428780:three_prime_UTR 45.0%
CATCTCAACATGTTGTGAGC+CGG - tig0026409:65210-65229 None:intergenic 45.0%
!! TATATATATATATATGTATA+TGG + tig0026409:62878-62897 Msa1428780:intron 5.0%
!! ATATATATATATATGTATAT+GGG + tig0026409:62879-62898 Msa1428780:intron 5.0%
TGAGGAGAAGACTCCATCAC+GGG + tig0026409:60653-60672 Msa1428780:CDS 50.0%
ACGGGGATGTCGATGGAAAA+CGG + tig0026409:60671-60690 Msa1428780:CDS 50.0%
TTGAATGAACCGTTGCTGGG+AGG + tig0026409:60727-60746 Msa1428780:CDS 50.0%
!!! CAAGCACGTCTTTTGGAGCT+TGG + tig0026409:61285-61304 Msa1428780:intron 50.0%
GTGGAGTGAATTGATGGAGG+AGG + tig0026409:61316-61335 Msa1428780:intron 50.0%
! ATGAGGGTGCAATCACAAGG+TGG + tig0026409:61365-61384 Msa1428780:intron 50.0%
CGGCTTGAAGTTCCCTTTGA+CGG + tig0026409:62774-62793 Msa1428780:three_prime_UTR 50.0%
TGTTACAAGCCACCCTTTGG+TGG + tig0026409:62905-62924 Msa1428780:intron 50.0%
TGGAAGGAAATGGGATGGCA+AGG + tig0026409:63580-63599 Msa1428780:three_prime_UTR 50.0%
GAGGGGCCTGAATATGGATA+AGG + tig0026409:63660-63679 Msa1428780:intron 50.0%
AGCTCAAGAAGGGCGATGAT+TGG - tig0026409:63907-63926 None:intergenic 50.0%
AAGATGGAATCCGAGCAGAG+TGG + tig0026409:64261-64280 Msa1428780:three_prime_UTR 50.0%
AGATGGAATCCGAGCAGAGT+GGG + tig0026409:64262-64281 Msa1428780:three_prime_UTR 50.0%
TCTGAAAGCCTGTTTGCCTC+AGG + tig0026409:64655-64674 Msa1428780:intron 50.0%
CTGAAAGCCTGTTTGCCTCA+GGG + tig0026409:64656-64675 Msa1428780:intron 50.0%
TACAGTTCCCTGAGGCAAAC+AGG - tig0026409:64666-64685 None:intergenic 50.0%
! TTTTCTACGGCTGCTTGAGG+AGG + tig0026409:64916-64935 Msa1428780:three_prime_UTR 50.0%
GCTGCTTGAGGAGGATGAAA+TGG + tig0026409:64925-64944 Msa1428780:three_prime_UTR 50.0%
GAGGAGAAGACTCCATCACG+GGG + tig0026409:60654-60673 Msa1428780:CDS 55.0%
TTCCATCGACATCCCCGTGA+TGG - tig0026409:60669-60688 None:intergenic 55.0%
GGATGTCGATGGAAAACGGC+AGG + tig0026409:60675-60694 Msa1428780:CDS 55.0%
ACTGTGCCCATTGCGCAATG+AGG - tig0026409:60949-60968 None:intergenic 55.0%
TCATTGCGCAATGGGCACAG+TGG + tig0026409:60948-60967 Msa1428780:CDS 55.0%
GGGTGCAATCACAAGGTGGT+TGG + tig0026409:61369-61388 Msa1428780:intron 55.0%
!! TGCACAGGGCTAAGTGTTGG+AGG - tig0026409:62010-62029 None:intergenic 55.0%
TCCAACACTTAGCCCTGTGC+AGG + tig0026409:62009-62028 Msa1428780:three_prime_UTR 55.0%
ACCTGCACAGGGCTAAGTGT+TGG - tig0026409:62013-62032 None:intergenic 55.0%
GGTTGAGTTACGGGGTGTGA+TGG - tig0026409:62190-62209 None:intergenic 55.0%
!! TGGAAGGCATCAGTGGGCAA+CGG + tig0026409:62353-62372 Msa1428780:intron 55.0%
! CTAACCATGGTTTGCAGGGG+TGG + tig0026409:64043-64062 Msa1428780:intron 55.0%
CTCCATCACGGGGATGTCGA+TGG + tig0026409:60664-60683 Msa1428780:CDS 60.0%
GCGCAATGGGCACAGTGGTT+AGG + tig0026409:60953-60972 Msa1428780:CDS 60.0%
AGTGGAGGAAGCTCTCGGTC+AGG - tig0026409:63547-63566 None:intergenic 60.0%
GATGGGGAGGGGCCTGAATA+TGG + tig0026409:63654-63673 Msa1428780:intron 60.0%
! ACCATGGTTTGCAGGGGTGG+AGG + tig0026409:64046-64065 Msa1428780:intron 60.0%
! CCATGGTTTGCAGGGGTGGA+GGG + tig0026409:64047-64066 Msa1428780:intron 60.0%
CCCTCCACCCCTGCAAACCA+TGG - tig0026409:64050-64069 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026409 gene 59961 65678 59961 ID=Msa1428780;Name=Msa1428780
tig0026409 mRNA 59961 65678 59961 ID=Msa1428780-mRNA-1;Parent=Msa1428780;Name=Msa1428780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=241|1|1|1|0.8|0.54|11|891|106
tig0026409 exon 59961 60171 59961 ID=Msa1428780-mRNA-1:exon:6126;Parent=Msa1428780-mRNA-1
tig0026409 exon 60607 60774 60607 ID=Msa1428780-mRNA-1:exon:6127;Parent=Msa1428780-mRNA-1
tig0026409 exon 60872 60974 60872 ID=Msa1428780-mRNA-1:exon:6128;Parent=Msa1428780-mRNA-1
tig0026409 exon 61920 62030 61920 ID=Msa1428780-mRNA-1:exon:6129;Parent=Msa1428780-mRNA-1
tig0026409 exon 62747 62815 62747 ID=Msa1428780-mRNA-1:exon:6130;Parent=Msa1428780-mRNA-1
tig0026409 exon 63511 63626 63511 ID=Msa1428780-mRNA-1:exon:6131;Parent=Msa1428780-mRNA-1
tig0026409 exon 64060 64114 64060 ID=Msa1428780-mRNA-1:exon:6132;Parent=Msa1428780-mRNA-1
tig0026409 exon 64233 64353 64233 ID=Msa1428780-mRNA-1:exon:6133;Parent=Msa1428780-mRNA-1
tig0026409 exon 64888 65030 64888 ID=Msa1428780-mRNA-1:exon:6134;Parent=Msa1428780-mRNA-1
tig0026409 exon 65132 65461 65132 ID=Msa1428780-mRNA-1:exon:6135;Parent=Msa1428780-mRNA-1
tig0026409 exon 65653 65678 65653 ID=Msa1428780-mRNA-1:exon:6136;Parent=Msa1428780-mRNA-1
tig0026409 five_prime_UTR 59961 60171 59961 ID=Msa1428780-mRNA-1:five_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 five_prime_UTR 60607 60636 60607 ID=Msa1428780-mRNA-1:five_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 CDS 60637 60774 60637 ID=Msa1428780-mRNA-1:cds;Parent=Msa1428780-mRNA-1
tig0026409 CDS 60872 60974 60872 ID=Msa1428780-mRNA-1:cds;Parent=Msa1428780-mRNA-1
tig0026409 CDS 61920 61999 61920 ID=Msa1428780-mRNA-1:cds;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 62000 62030 62000 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 62747 62815 62747 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 63511 63626 63511 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 64060 64114 64060 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 64233 64353 64233 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 64888 65030 64888 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 65132 65461 65132 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
tig0026409 three_prime_UTR 65653 65678 65653 ID=Msa1428780-mRNA-1:three_prime_utr;Parent=Msa1428780-mRNA-1
Gene Sequence

>Msa1428780

ATGTCTTCAAAAACATTGAGGAGAAGACTCCATCACGGGGATGTCGATGGAAAACGGCAGGAACATTTGGATACTTCTGGATTAGATTCATTGAATGAACCGTTGCTGGGAGGTGATGATTATATTGAGAGTAAGAAGATATGTACGCTTGAAGATTTGTGGGATGATGAGAGAAAGAAGGCGCAAATTCATTGGACATTCTTATTTTCGAACCTCATTGCGCAATGGGCACAGTGGTTAGCAAACATTGTTCTAGGGTCTGGATCTCTTCTTAGTCGTCTTTATCGCATTCTACTGCCGTTTTTACTTGCAAAACAATAG

Protein sequence

>Msa1428780

MSSKTLRRRLHHGDVDGKRQEHLDTSGLDSLNEPLLGGDDYIESKKICTLEDLWDDERKKAQIHWTFLFSNLIAQWAQWLANIVLGSGSLLSRLYRILLPFLLAKQ*