Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405240 | ABJ74169.1 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405240 | sp|Q9C5U1|AHK3_ARATH | 66.834 | 398 | 108 | 5 | 1 | 381 | 1 | 391 | 2.30e-177 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405240 | Q000L5 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029550 | Msa0405240 | 0.804508 | 2.088427e-49 | -8.615850e-47 |
| Msa0138950 | Msa0405240 | 0.814163 | 1.771661e-51 | -8.615850e-47 |
| Msa0222550 | Msa0405240 | 0.800205 | 1.607692e-48 | -8.615850e-47 |
| Msa0405240 | Msa0467930 | 0.862501 | 4.845546e-64 | -8.615850e-47 |
| Msa0405240 | Msa0915350 | 0.801569 | 8.465048e-49 | -8.615850e-47 |
| Msa0405240 | Msa0982240 | 0.808086 | 3.680245e-50 | -8.615850e-47 |
| Msa0405240 | Msa1447150 | 0.820075 | 8.306088e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405240 | MtrunA17_Chr3g0122391 | 98.688 | 381 | 5 | 0 | 1 | 381 | 1 | 381 | 0.0 | 798 |
| Msa0405240 | MtrunA17_Chr8g0377481 | 84.084 | 333 | 53 | 0 | 49 | 381 | 1 | 333 | 0.0 | 600 |
| Msa0405240 | MtrunA17_Chr5g0447641 | 61.921 | 302 | 111 | 2 | 82 | 381 | 259 | 558 | 7.64e-131 | 404 |
| Msa0405240 | MtrunA17_Chr8g0392301 | 57.096 | 303 | 106 | 3 | 84 | 381 | 41 | 324 | 5.08e-112 | 350 |
| Msa0405240 | MtrunA17_Chr2g0311191 | 50.000 | 68 | 34 | 0 | 243 | 310 | 21 | 88 | 3.69e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405240 | AT1G27320.1 | 66.834 | 398 | 108 | 5 | 1 | 381 | 1 | 391 | 2.34e-178 | 523 |
| Msa0405240 | AT5G35750.1 | 62.791 | 301 | 109 | 2 | 82 | 381 | 230 | 528 | 1.97e-129 | 400 |
| Msa0405240 | AT2G01830.1 | 57.377 | 305 | 113 | 3 | 79 | 381 | 101 | 390 | 3.61e-113 | 354 |
| Msa0405240 | AT2G01830.4 | 57.377 | 305 | 113 | 3 | 79 | 381 | 101 | 390 | 3.61e-113 | 354 |
| Msa0405240 | AT2G01830.6 | 57.377 | 305 | 113 | 3 | 79 | 381 | 101 | 390 | 3.61e-113 | 354 |
| Msa0405240 | AT2G01830.3 | 57.377 | 305 | 113 | 3 | 79 | 381 | 101 | 390 | 3.61e-113 | 354 |
| Msa0405240 | AT2G01830.5 | 57.377 | 305 | 113 | 3 | 79 | 381 | 113 | 402 | 4.44e-113 | 354 |
| Msa0405240 | AT2G01830.2 | 57.377 | 305 | 113 | 3 | 79 | 381 | 124 | 413 | 6.14e-113 | 354 |
Find 99 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTATTGATGTGCTTTC+TGG | 0.199915 | 3_2:-39736031 | Msa0405240:CDS |
| ATTGTTGCTGGCATGGGTTT+TGG | 0.201381 | 3_2:-39736916 | Msa0405240:CDS |
| TTAACTTTGGAGATCCTTTC+AGG | 0.201914 | 3_2:-39735175 | Msa0405240:CDS |
| TATCAACTGGTTCATTAGTA+TGG | 0.209439 | 3_2:-39737081 | Msa0405240:CDS |
| ATGAGTTTGTTACATGTAAT+TGG | 0.215142 | 3_2:-39737167 | Msa0405240:CDS |
| TTGCTTACGTTGTTTGGTTT+TGG | 0.223337 | 3_2:-39737564 | Msa0405240:five_prime_UTR |
| GTTGCTTGAATCCTTTCATT+TGG | 0.253731 | 3_2:+39735786 | None:intergenic |
| TTGCTTGAATCCTTTCATTT+GGG | 0.258270 | 3_2:+39735787 | None:intergenic |
| GTTGGTTTATAGTGTCTCTA+TGG | 0.276176 | 3_2:-39736893 | Msa0405240:CDS |
| TTCTCCTTGCTTACGTTGTT+TGG | 0.292123 | 3_2:-39737570 | Msa0405240:five_prime_UTR |
| TACACTGATAATACTGTTGA+TGG | 0.335179 | 3_2:+39736976 | None:intergenic |
| TTTGCAAAAGACAAGATAAT+AGG | 0.335996 | 3_2:+39737683 | None:intergenic |
| TCAGAACCATACATGGGAAT+TGG | 0.339185 | 3_2:+39735233 | None:intergenic |
| TATCTTTAATTTATATCAAC+TGG | 0.355755 | 3_2:-39737094 | Msa0405240:CDS |
| CATGTGAGCTTTCTTAACTT+TGG | 0.362535 | 3_2:-39735188 | Msa0405240:CDS |
| TGATTATGTACCAGATGAAT+TGG | 0.385215 | 3_2:-39736119 | Msa0405240:CDS |
| TGACAGGAGCATATTCTTCA+TGG | 0.406008 | 3_2:+39736083 | None:intergenic |
| TCATTTGGGGTAGCATTTGA+TGG | 0.407780 | 3_2:+39735801 | None:intergenic |
| CAACAGTATTATCAGTGTAT+TGG | 0.408995 | 3_2:-39736972 | Msa0405240:CDS |
| GTTAGAAGAATGAAACTCAT+AGG | 0.412367 | 3_2:+39737656 | None:intergenic |
| ACATAATCATCCTCATGAAC+CGG | 0.414182 | 3_2:+39736133 | None:intergenic |
| GTGTTGCGAGCAAGAGAATC+AGG | 0.418715 | 3_2:-39735912 | Msa0405240:CDS |
| TGAGTTTGTTACATGTAATT+GGG | 0.424281 | 3_2:-39737166 | Msa0405240:CDS |
| TTTCTATTCATATAGTTTGA+AGG | 0.431167 | 3_2:-39737232 | Msa0405240:intron |
| TCATTTCTGTTCACTAGTGT+TGG | 0.431457 | 3_2:-39737202 | Msa0405240:five_prime_UTR |
| GTATTGGTTCTAAAAGAGTT+AGG | 0.431830 | 3_2:-39736956 | Msa0405240:CDS |
| TAAATGTTGGGAGAAGATCT+TGG | 0.452217 | 3_2:-39737015 | Msa0405240:CDS |
| CAGAACCATACATGGGAATT+GGG | 0.453538 | 3_2:+39735234 | None:intergenic |
| AAATGTTGGGAGAAGATCTT+GGG | 0.457357 | 3_2:-39737014 | Msa0405240:CDS |
| TTCATATAGTTTGAAGGTGG+TGG | 0.462398 | 3_2:-39737226 | Msa0405240:intron |
| TGCTATGCAGGTATCTTGGT+GGG | 0.467017 | 3_2:-39735355 | Msa0405240:intron |
| TAACTGCTATGCAGGTATCT+TGG | 0.469122 | 3_2:-39735359 | Msa0405240:intron |
| CTGTTGAAAACAAACCGTTT+AGG | 0.473410 | 3_2:-39735861 | Msa0405240:CDS |
| GGGGATGGTTCCAATTCATC+TGG | 0.475795 | 3_2:+39736109 | None:intergenic |
| GGAGGAAATTGTTGCTGGCA+TGG | 0.482367 | 3_2:-39736923 | Msa0405240:CDS |
| CATTAGTATGGACACAAAGA+TGG | 0.482671 | 3_2:-39737069 | Msa0405240:CDS |
| ATTGTGGAGGAAATTGTTGC+TGG | 0.485555 | 3_2:-39736928 | Msa0405240:CDS |
| GAGCATATTCTTCATGGATA+GGG | 0.491204 | 3_2:+39736089 | None:intergenic |
| AACAAGGGTGGAGTATTAAG+AGG | 0.492013 | 3_2:-39736177 | Msa0405240:CDS |
| TATTGATGTGCTTTCTGGAA+AGG | 0.494599 | 3_2:-39736026 | Msa0405240:intron |
| GTTTGAAATAGAGTCATTAG+TGG | 0.495045 | 3_2:-39735330 | Msa0405240:CDS |
| ATGTGAGGATAACTCCTAAA+CGG | 0.497426 | 3_2:+39735847 | None:intergenic |
| GAAAGATGTGGCTTAAATGT+TGG | 0.505804 | 3_2:-39737028 | Msa0405240:CDS |
| CTGCTATGCAGGTATCTTGG+TGG | 0.507522 | 3_2:-39735356 | Msa0405240:intron |
| ACACACCCAATTCCCATGTA+TGG | 0.507762 | 3_2:-39735239 | Msa0405240:CDS |
| GAGGAAATTGTTGCTGGCAT+GGG | 0.509124 | 3_2:-39736922 | Msa0405240:CDS |
| GGAGCATATTCTTCATGGAT+AGG | 0.512983 | 3_2:+39736088 | None:intergenic |
| GTGGTGTTGCATATGCTGTA+AGG | 0.513848 | 3_2:-39736234 | Msa0405240:CDS |
| TGATACATCAGAACCATACA+TGG | 0.518789 | 3_2:+39735226 | None:intergenic |
| ACTAGTGTTGGTTACTGTTG+TGG | 0.520754 | 3_2:-39737190 | Msa0405240:five_prime_UTR |
| AATTGGGTTTAGTCTAAAAG+TGG | 0.523157 | 3_2:-39737150 | Msa0405240:CDS |
| GAGCAAGAGAATCAGGCAAA+GGG | 0.525841 | 3_2:-39735905 | Msa0405240:CDS |
| ACAAGATAATAGGAATATGA+TGG | 0.525910 | 3_2:+39737693 | None:intergenic |
| GGAAGCATGAGATGCACTGC+AGG | 0.532148 | 3_2:-39735154 | Msa0405240:CDS |
| AAGATTAGGTACCTGGTCAA+TGG | 0.533997 | 3_2:+39736701 | None:intergenic |
| AAAGATGTGGCTTAAATGTT+GGG | 0.536867 | 3_2:-39737027 | Msa0405240:CDS |
| TGCTTGAATCCTTTCATTTG+GGG | 0.537514 | 3_2:+39735788 | None:intergenic |
| ACTTACACAACACTGAAAAG+AGG | 0.541604 | 3_2:-39736854 | Msa0405240:CDS |
| CAGAAGGATTCTTAGCATGA+TGG | 0.541718 | 3_2:+39736724 | None:intergenic |
| TAGGAGATGGTGGAAAGATG+TGG | 0.542063 | 3_2:-39737040 | Msa0405240:CDS |
| AAAGAGTTAGGAGAAAATTG+TGG | 0.543247 | 3_2:-39736944 | Msa0405240:CDS |
| GAAAGGATTCAAGCAACTGA+TGG | 0.545412 | 3_2:-39735780 | Msa0405240:CDS |
| TAAGGGTGCTTCAATCTGAA+AGG | 0.545666 | 3_2:-39736216 | Msa0405240:CDS |
| AAGGGTGCTTCAATCTGAAA+GGG | 0.547300 | 3_2:-39736215 | Msa0405240:CDS |
| AGGGTGGAGTATTAAGAGGA+TGG | 0.548363 | 3_2:-39736173 | Msa0405240:CDS |
| GTATCTTGTGCAAAGATGAC+AGG | 0.548377 | 3_2:+39736067 | None:intergenic |
| TATGCAACACCACTTGTAAG+TGG | 0.549161 | 3_2:+39736244 | None:intergenic |
| ATGAACCGGGTTCTGCTCCA+TGG | 0.549463 | 3_2:+39736147 | None:intergenic |
| ATTAGTATGGACACAAAGAT+GGG | 0.549576 | 3_2:-39737068 | Msa0405240:CDS |
| ATTGGGTTTAGTCTAAAAGT+GGG | 0.554273 | 3_2:-39737149 | Msa0405240:CDS |
| TGCATCTCATGCTTCCTGAA+AGG | 0.558589 | 3_2:+39735161 | None:intergenic |
| ATCATACACATTAACAAGCA+CGG | 0.567202 | 3_2:+39735274 | None:intergenic |
| GAATCCTTCTGCCATTGACC+AGG | 0.567998 | 3_2:-39736712 | Msa0405240:intron |
| TATTCTTCATGGATAGGGGA+TGG | 0.574785 | 3_2:+39736094 | None:intergenic |
| AAAGGATTCAAGCAACTGAT+GGG | 0.577305 | 3_2:-39735779 | Msa0405240:intron |
| GGAGCAGAACCCGGTTCATG+AGG | 0.577743 | 3_2:-39736143 | Msa0405240:CDS |
| CAAATGCTACCCCAAATGAA+AGG | 0.586250 | 3_2:-39735797 | Msa0405240:CDS |
| AACAATTTGAGAAGCAACAA+GGG | 0.589239 | 3_2:-39736192 | Msa0405240:CDS |
| AGCATATTCTTCATGGATAG+GGG | 0.589325 | 3_2:+39736090 | None:intergenic |
| CGAGCAAGAGAATCAGGCAA+AGG | 0.590048 | 3_2:-39735906 | Msa0405240:CDS |
| GGATACCATGGAGCAGAACC+CGG | 0.595639 | 3_2:-39736152 | Msa0405240:CDS |
| CATAATCATCCTCATGAACC+GGG | 0.599931 | 3_2:+39736134 | None:intergenic |
| CTATTCATATAGTTTGAAGG+TGG | 0.603671 | 3_2:-39737229 | Msa0405240:intron |
| GAACAATTTGAGAAGCAACA+AGG | 0.603982 | 3_2:-39736193 | Msa0405240:CDS |
| GCTATGCAGGTATCTTGGTG+GGG | 0.608136 | 3_2:-39735354 | Msa0405240:intron |
| TATTAAGAGGATGGATACCA+TGG | 0.611537 | 3_2:-39736164 | Msa0405240:CDS |
| TGGTGTTGCATATGCTGTAA+GGG | 0.613148 | 3_2:-39736233 | Msa0405240:CDS |
| TTTGAGAGGCCACTTACAAG+TGG | 0.618617 | 3_2:-39736253 | Msa0405240:CDS |
| GCATGTGTGATGAAAGAGCT+AGG | 0.632094 | 3_2:-39736815 | Msa0405240:CDS |
| AAAACCAAACAACGTAAGCA+AGG | 0.633007 | 3_2:+39737566 | None:intergenic |
| GGTACCTGGTCAATGGCAGA+AGG | 0.637480 | 3_2:+39736708 | None:intergenic |
| GAGTTAGGAGAAAATTGTGG+AGG | 0.641276 | 3_2:-39736941 | Msa0405240:CDS |
| TCTTGTAAACAGCAAATGTG+AGG | 0.641788 | 3_2:+39735832 | None:intergenic |
| AGTTGAGATCAGAATAGACA+TGG | 0.657095 | 3_2:+39736749 | None:intergenic |
| AGCTGAAGAACACTGCAACA+AGG | 0.661509 | 3_2:-39737532 | Msa0405240:intron |
| AATTTGAGAAGCAACAAGGG+TGG | 0.662837 | 3_2:-39736189 | Msa0405240:CDS |
| TTGGGTTTAGTCTAAAAGTG+GGG | 0.668648 | 3_2:-39737148 | Msa0405240:CDS |
| AGCAAGAGAATCAGGCAAAG+GGG | 0.689158 | 3_2:-39735904 | Msa0405240:CDS |
| GATACATCAGAACCATACAT+GGG | 0.700260 | 3_2:+39735227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTATATGTTTTGTTTT+TGG | - | chr3_2:39735383-39735402 | Msa0405240:intron | 15.0% |
| !!! | AAATAGCTTTAAATTCAAAA+TGG | + | chr3_2:39735531-39735550 | None:intergenic | 15.0% |
| !!! | ATTTAAAGCTATTTTTCTTT+TGG | - | chr3_2:39735537-39735556 | Msa0405240:intron | 15.0% |
| !!! | TATCTTTAATTTATATCAAC+TGG | - | chr3_2:39735744-39735763 | Msa0405240:intron | 15.0% |
| !!! | TTTGACTTTATTTTATCTTT+TGG | - | chr3_2:39737269-39737288 | Msa0405240:intron | 15.0% |
| !!! | TTAAAAGGAATATGTTTTTG+TGG | + | chr3_2:39735237-39735256 | None:intergenic | 20.0% |
| !!! | TGATTCTTTGATTCTTTTAA+AGG | - | chr3_2:39735487-39735506 | Msa0405240:intron | 20.0% |
| !! | TTTCTATTCATATAGTTTGA+AGG | - | chr3_2:39735606-39735625 | Msa0405240:intron | 20.0% |
| !! | AATTGAAAAACTAAGTGATT+TGG | + | chr3_2:39736359-39736378 | None:intergenic | 20.0% |
| !!! | TTTTCAATTATGTACTATGT+AGG | - | chr3_2:39736370-39736389 | Msa0405240:intron | 20.0% |
| !! | TCAAATAAGTGAATCTAAAT+AGG | + | chr3_2:39737114-39737133 | None:intergenic | 20.0% |
| ! | ACAAGATAATAGGAATATGA+TGG | + | chr3_2:39735148-39735167 | None:intergenic | 25.0% |
| ! | TTTGCAAAAGACAAGATAAT+AGG | + | chr3_2:39735158-39735177 | None:intergenic | 25.0% |
| !!! | AGAAGTGTTCAAGTTTTAAA+AGG | + | chr3_2:39735252-39735271 | None:intergenic | 25.0% |
| ! | AACAAGTATCAATTCATGTT+TGG | - | chr3_2:39735448-39735467 | Msa0405240:intron | 25.0% |
| !!! | AAAGCTATTTTTCTTTTGGT+TGG | - | chr3_2:39735541-39735560 | Msa0405240:intron | 25.0% |
| !!! | ATGAGTTTGTTACATGTAAT+TGG | - | chr3_2:39735671-39735690 | Msa0405240:intron | 25.0% |
| !!! | TGAGTTTGTTACATGTAATT+GGG | - | chr3_2:39735672-39735691 | Msa0405240:intron | 25.0% |
| ! | CTTAAAACTTGAAAATCAGA+AGG | + | chr3_2:39736409-39736428 | None:intergenic | 25.0% |
| !!! | TTCTTAACTTGTTCATATAC+AGG | - | chr3_2:39736889-39736908 | Msa0405240:CDS | 25.0% |
| !!! | ATATGTTTTGGAATTTGTCA+AGG | - | chr3_2:39737087-39737106 | Msa0405240:CDS | 25.0% |
| !!! | TATGTTTTGGAATTTGTCAA+GGG | - | chr3_2:39737088-39737107 | Msa0405240:CDS | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr3_2:39737192-39737211 | None:intergenic | 25.0% |
| ! | TTATTTCCATAAGCTTATCT+TGG | - | chr3_2:39737207-39737226 | Msa0405240:five_prime_UTR | 25.0% |
| ! | TATTTCCATAAGCTTATCTT+GGG | - | chr3_2:39737208-39737227 | Msa0405240:five_prime_UTR | 25.0% |
| !!! | TTAACTTGTTTATCCAAACT+TGG | - | chr3_2:39737352-39737371 | Msa0405240:intron | 25.0% |
| ! | AAGTTAGCTAATTCTGATTT+AGG | + | chr3_2:39737378-39737397 | None:intergenic | 25.0% |
| GTTAGAAGAATGAAACTCAT+AGG | + | chr3_2:39735185-39735204 | None:intergenic | 30.0% | |
| CTATTCATATAGTTTGAAGG+TGG | - | chr3_2:39735609-39735628 | Msa0405240:intron | 30.0% | |
| AATTGGGTTTAGTCTAAAAG+TGG | - | chr3_2:39735688-39735707 | Msa0405240:intron | 30.0% | |
| ATTGGGTTTAGTCTAAAAGT+GGG | - | chr3_2:39735689-39735708 | Msa0405240:intron | 30.0% | |
| ! | TATCAACTGGTTCATTAGTA+TGG | - | chr3_2:39735757-39735776 | Msa0405240:intron | 30.0% |
| ATTAGTATGGACACAAAGAT+GGG | - | chr3_2:39735770-39735789 | Msa0405240:intron | 30.0% | |
| AAAGATGTGGCTTAAATGTT+GGG | - | chr3_2:39735811-39735830 | Msa0405240:CDS | 30.0% | |
| TACACTGATAATACTGTTGA+TGG | + | chr3_2:39735865-39735884 | None:intergenic | 30.0% | |
| CAACAGTATTATCAGTGTAT+TGG | - | chr3_2:39735866-39735885 | Msa0405240:CDS | 30.0% | |
| !! | GTATTGGTTCTAAAAGAGTT+AGG | - | chr3_2:39735882-39735901 | Msa0405240:CDS | 30.0% |
| AAAGAGTTAGGAGAAAATTG+TGG | - | chr3_2:39735894-39735913 | Msa0405240:CDS | 30.0% | |
| GGACAAATATTGTTTAAGTC+AGG | - | chr3_2:39736273-39736292 | Msa0405240:CDS | 30.0% | |
| AACAATTTGAGAAGCAACAA+GGG | - | chr3_2:39736646-39736665 | Msa0405240:intron | 30.0% | |
| TGATTATGTACCAGATGAAT+TGG | - | chr3_2:39736719-39736738 | Msa0405240:CDS | 30.0% | |
| ATATCTATTGATGTGCTTTC+TGG | - | chr3_2:39736807-39736826 | Msa0405240:CDS | 30.0% | |
| GTTTCTTGTGAGATTATATG+TGG | - | chr3_2:39736838-39736857 | Msa0405240:CDS | 30.0% | |
| TGAGATTATATGTGGAGTTA+TGG | - | chr3_2:39736846-39736865 | Msa0405240:CDS | 30.0% | |
| ! | TTGTTTTCAACAGCCTAAAA+GGG | + | chr3_2:39736970-39736989 | None:intergenic | 30.0% |
| !! | TTTGTTTTCAACAGCCTAAA+AGG | + | chr3_2:39736971-39736990 | None:intergenic | 30.0% |
| TTGCTTGAATCCTTTCATTT+GGG | + | chr3_2:39737054-39737073 | None:intergenic | 30.0% | |
| ! | GTTTGAAATAGAGTCATTAG+TGG | - | chr3_2:39737508-39737527 | Msa0405240:intron | 30.0% |
| ATCATACACATTAACAAGCA+CGG | + | chr3_2:39737567-39737586 | None:intergenic | 30.0% | |
| ! | TTTTTGTGGAAGACAGTGAA+AGG | + | chr3_2:39735223-39735242 | None:intergenic | 35.0% |
| AAAACCAAACAACGTAAGCA+AGG | + | chr3_2:39735275-39735294 | None:intergenic | 35.0% | |
| !! | TTGCTTACGTTGTTTGGTTT+TGG | - | chr3_2:39735274-39735293 | Msa0405240:CDS | 35.0% |
| ACTACCAACCAAGAAAAGAA+GGG | + | chr3_2:39735409-39735428 | None:intergenic | 35.0% | |
| AACTACCAACCAAGAAAAGA+AGG | + | chr3_2:39735410-39735429 | None:intergenic | 35.0% | |
| !!! | TTTTCTTGGTTGGTAGTTTG+TGG | - | chr3_2:39735412-39735431 | Msa0405240:intron | 35.0% |
| TTCATATAGTTTGAAGGTGG+TGG | - | chr3_2:39735612-39735631 | Msa0405240:intron | 35.0% | |
| TCATTTCTGTTCACTAGTGT+TGG | - | chr3_2:39735636-39735655 | Msa0405240:intron | 35.0% | |
| TTGGGTTTAGTCTAAAAGTG+GGG | - | chr3_2:39735690-39735709 | Msa0405240:intron | 35.0% | |
| ! | TACTTTTAGTGCTATGTTGC+TGG | - | chr3_2:39735717-39735736 | Msa0405240:intron | 35.0% |
| CATTAGTATGGACACAAAGA+TGG | - | chr3_2:39735769-39735788 | Msa0405240:intron | 35.0% | |
| ! | GACACAAAGATGGGATTTTT+AGG | - | chr3_2:39735779-39735798 | Msa0405240:intron | 35.0% |
| !! | AAGATGGGATTTTTAGGAGA+TGG | - | chr3_2:39735785-39735804 | Msa0405240:CDS | 35.0% |
| GAAAGATGTGGCTTAAATGT+TGG | - | chr3_2:39735810-39735829 | Msa0405240:CDS | 35.0% | |
| TAAATGTTGGGAGAAGATCT+TGG | - | chr3_2:39735823-39735842 | Msa0405240:CDS | 35.0% | |
| AAATGTTGGGAGAAGATCTT+GGG | - | chr3_2:39735824-39735843 | Msa0405240:CDS | 35.0% | |
| ! | GTTGGTTTATAGTGTCTCTA+TGG | - | chr3_2:39735945-39735964 | Msa0405240:intron | 35.0% |
| ACTTACACAACACTGAAAAG+AGG | - | chr3_2:39735984-39736003 | Msa0405240:intron | 35.0% | |
| AGTTGAGATCAGAATAGACA+TGG | + | chr3_2:39736092-39736111 | None:intergenic | 35.0% | |
| AGACAGTGAGTAGTAAGATT+AGG | + | chr3_2:39736154-39736173 | None:intergenic | 35.0% | |
| TACTCACTGTCTTGCAATTA+AGG | - | chr3_2:39736162-39736181 | Msa0405240:CDS | 35.0% | |
| ATGCTAAAGACGAATTGTTC+AGG | + | chr3_2:39736316-39736335 | None:intergenic | 35.0% | |
| GAACAATTTGAGAAGCAACA+AGG | - | chr3_2:39736645-39736664 | Msa0405240:intron | 35.0% | |
| TATTAAGAGGATGGATACCA+TGG | - | chr3_2:39736674-39736693 | Msa0405240:intron | 35.0% | |
| ACATAATCATCCTCATGAAC+CGG | + | chr3_2:39736708-39736727 | None:intergenic | 35.0% | |
| AGCATATTCTTCATGGATAG+GGG | + | chr3_2:39736751-39736770 | None:intergenic | 35.0% | |
| GAGCATATTCTTCATGGATA+GGG | + | chr3_2:39736752-39736771 | None:intergenic | 35.0% | |
| ! | TATTGATGTGCTTTCTGGAA+AGG | - | chr3_2:39736812-39736831 | Msa0405240:CDS | 35.0% |
| ! | TGTTTTCAACAGCCTAAAAG+GGG | + | chr3_2:39736969-39736988 | None:intergenic | 35.0% |
| CTGTTGAAAACAAACCGTTT+AGG | - | chr3_2:39736977-39736996 | Msa0405240:CDS | 35.0% | |
| ATGTGAGGATAACTCCTAAA+CGG | + | chr3_2:39736994-39737013 | None:intergenic | 35.0% | |
| TCTTGTAAACAGCAAATGTG+AGG | + | chr3_2:39737009-39737028 | None:intergenic | 35.0% | |
| TGCTTGAATCCTTTCATTTG+GGG | + | chr3_2:39737053-39737072 | None:intergenic | 35.0% | |
| GTTGCTTGAATCCTTTCATT+TGG | + | chr3_2:39737055-39737074 | None:intergenic | 35.0% | |
| AAAGGATTCAAGCAACTGAT+GGG | - | chr3_2:39737059-39737078 | Msa0405240:CDS | 35.0% | |
| !! | TGATGGGTGTGTATATGTTT+TGG | - | chr3_2:39737075-39737094 | Msa0405240:CDS | 35.0% |
| ATGATAAGTGTTTGCGCTTT+AGG | - | chr3_2:39737322-39737341 | Msa0405240:intron | 35.0% | |
| ATTCTGATTTAGGCCAAGTT+TGG | + | chr3_2:39737368-39737387 | None:intergenic | 35.0% | |
| GTGAGCAACTTTATTCGATT+TGG | - | chr3_2:39737421-39737440 | Msa0405240:intron | 35.0% | |
| GCGTAAACAATTCATGAACA+TGG | - | chr3_2:39737443-39737462 | Msa0405240:intron | 35.0% | |
| !!! | GTTTTAACTAACTGCTATGC+AGG | - | chr3_2:39737471-39737490 | Msa0405240:intron | 35.0% |
| GATACATCAGAACCATACAT+GGG | + | chr3_2:39737614-39737633 | None:intergenic | 35.0% | |
| TGATACATCAGAACCATACA+TGG | + | chr3_2:39737615-39737634 | None:intergenic | 35.0% | |
| CATGTGAGCTTTCTTAACTT+TGG | - | chr3_2:39737650-39737669 | Msa0405240:five_prime_UTR | 35.0% | |
| ! | TTAACTTTGGAGATCCTTTC+AGG | - | chr3_2:39737663-39737682 | Msa0405240:five_prime_UTR | 35.0% |
| TTCTCCTTGCTTACGTTGTT+TGG | - | chr3_2:39735268-39735287 | Msa0405240:CDS | 40.0% | |
| !!! | GTTTTTGGCCCTTCTTTTCT+TGG | - | chr3_2:39735398-39735417 | Msa0405240:intron | 40.0% |
| !! | ACTAGTGTTGGTTACTGTTG+TGG | - | chr3_2:39735648-39735667 | Msa0405240:intron | 40.0% |
| !! | ATGGGATTTTTAGGAGATGG+TGG | - | chr3_2:39735788-39735807 | Msa0405240:CDS | 40.0% |
| GAGTTAGGAGAAAATTGTGG+AGG | - | chr3_2:39735897-39735916 | Msa0405240:CDS | 40.0% | |
| ATTGTGGAGGAAATTGTTGC+TGG | - | chr3_2:39735910-39735929 | Msa0405240:CDS | 40.0% | |
| ! | GTGTCTCTATGGATCTTTTG+TGG | - | chr3_2:39735956-39735975 | Msa0405240:intron | 40.0% |
| CAGAAGGATTCTTAGCATGA+TGG | + | chr3_2:39736117-39736136 | None:intergenic | 40.0% | |
| AAGATTAGGTACCTGGTCAA+TGG | + | chr3_2:39736140-39736159 | None:intergenic | 40.0% | |
| GAGTAGTAAGATTAGGTACC+TGG | + | chr3_2:39736147-39736166 | None:intergenic | 40.0% | |
| TCCTGACTCAATTATCAGGA+GGG | + | chr3_2:39736239-39736258 | None:intergenic | 40.0% | |
| TACCTCCTGACTCAATTATC+AGG | + | chr3_2:39736243-39736262 | None:intergenic | 40.0% | |
| GTCAGGAGGTAAGTAAAGTA+TGG | - | chr3_2:39736252-39736271 | Msa0405240:CDS | 40.0% | |
| ! | ACTAAGTGATTTGGCTCAAC+AGG | + | chr3_2:39736350-39736369 | None:intergenic | 40.0% |
| !! | CAGAAAGAACTGCTTTTGAG+AGG | - | chr3_2:39736571-39736590 | Msa0405240:intron | 40.0% |
| TATGCAACACCACTTGTAAG+TGG | + | chr3_2:39736597-39736616 | None:intergenic | 40.0% | |
| !! | TGGTGTTGCATATGCTGTAA+GGG | - | chr3_2:39736605-39736624 | Msa0405240:intron | 40.0% |
| !! | TAAGGGTGCTTCAATCTGAA+AGG | - | chr3_2:39736622-39736641 | Msa0405240:intron | 40.0% |
| !! | AAGGGTGCTTCAATCTGAAA+GGG | - | chr3_2:39736623-39736642 | Msa0405240:intron | 40.0% |
| AATTTGAGAAGCAACAAGGG+TGG | - | chr3_2:39736649-39736668 | Msa0405240:intron | 40.0% | |
| ! | AACAAGGGTGGAGTATTAAG+AGG | - | chr3_2:39736661-39736680 | Msa0405240:intron | 40.0% |
| CATAATCATCCTCATGAACC+GGG | + | chr3_2:39736707-39736726 | None:intergenic | 40.0% | |
| TATTCTTCATGGATAGGGGA+TGG | + | chr3_2:39736747-39736766 | None:intergenic | 40.0% | |
| GGAGCATATTCTTCATGGAT+AGG | + | chr3_2:39736753-39736772 | None:intergenic | 40.0% | |
| ! | TGACAGGAGCATATTCTTCA+TGG | + | chr3_2:39736758-39736777 | None:intergenic | 40.0% |
| GTATCTTGTGCAAAGATGAC+AGG | + | chr3_2:39736774-39736793 | None:intergenic | 40.0% | |
| ! | TTGCTCGCAACACATTTTCA+CGG | + | chr3_2:39736919-39736938 | None:intergenic | 40.0% |
| ! | TCATTTGGGGTAGCATTTGA+TGG | + | chr3_2:39737040-39737059 | None:intergenic | 40.0% |
| CAAATGCTACCCCAAATGAA+AGG | - | chr3_2:39737041-39737060 | Msa0405240:CDS | 40.0% | |
| GAAAGGATTCAAGCAACTGA+TGG | - | chr3_2:39737058-39737077 | Msa0405240:CDS | 40.0% | |
| AGCTACCCAAGATAAGCTTA+TGG | + | chr3_2:39737216-39737235 | None:intergenic | 40.0% | |
| TAACTGCTATGCAGGTATCT+TGG | - | chr3_2:39737479-39737498 | Msa0405240:intron | 40.0% | |
| CAGAACCATACATGGGAATT+GGG | + | chr3_2:39737607-39737626 | None:intergenic | 40.0% | |
| TCAGAACCATACATGGGAAT+TGG | + | chr3_2:39737608-39737627 | None:intergenic | 40.0% | |
| AGCTGAAGAACACTGCAACA+AGG | - | chr3_2:39735306-39735325 | Msa0405240:CDS | 45.0% | |
| ACACTGCAACAAGGTAGTGT+TGG | - | chr3_2:39735315-39735334 | Msa0405240:CDS | 45.0% | |
| ! | TTGGCCCTTCTTTTCTTGGT+TGG | - | chr3_2:39735402-39735421 | Msa0405240:intron | 45.0% |
| !! | TAGGAGATGGTGGAAAGATG+TGG | - | chr3_2:39735798-39735817 | Msa0405240:CDS | 45.0% |
| GAGGAAATTGTTGCTGGCAT+GGG | - | chr3_2:39735916-39735935 | Msa0405240:CDS | 45.0% | |
| ! | ATTGTTGCTGGCATGGGTTT+TGG | - | chr3_2:39735922-39735941 | Msa0405240:CDS | 45.0% |
| ! | TTGTTGCTGGCATGGGTTTT+GGG | - | chr3_2:39735923-39735942 | Msa0405240:CDS | 45.0% |
| GCATGTGTGATGAAAGAGCT+AGG | - | chr3_2:39736023-39736042 | Msa0405240:intron | 45.0% | |
| ACCCTCCTGATAATTGAGTC+AGG | - | chr3_2:39736235-39736254 | Msa0405240:CDS | 45.0% | |
| CTCCTGACTCAATTATCAGG+AGG | + | chr3_2:39736240-39736259 | None:intergenic | 45.0% | |
| CTCCTGATAATTGAGTCAGG+AGG | - | chr3_2:39736238-39736257 | Msa0405240:CDS | 45.0% | |
| TTTGAGAGGCCACTTACAAG+TGG | - | chr3_2:39736585-39736604 | Msa0405240:intron | 45.0% | |
| !! | GTGGTGTTGCATATGCTGTA+AGG | - | chr3_2:39736604-39736623 | Msa0405240:intron | 45.0% |
| ! | AGGGTGGAGTATTAAGAGGA+TGG | - | chr3_2:39736665-39736684 | Msa0405240:intron | 45.0% |
| GAGCAAGAGAATCAGGCAAA+GGG | - | chr3_2:39736933-39736952 | Msa0405240:CDS | 45.0% | |
| AGCAAGAGAATCAGGCAAAG+GGG | - | chr3_2:39736934-39736953 | Msa0405240:CDS | 45.0% | |
| !!! | GGGTTTTAACTGCCCCTTTT+AGG | - | chr3_2:39736954-39736973 | Msa0405240:CDS | 45.0% |
| TGCTATGCAGGTATCTTGGT+GGG | - | chr3_2:39737483-39737502 | Msa0405240:intron | 45.0% | |
| ACACACCCAATTCCCATGTA+TGG | - | chr3_2:39737599-39737618 | Msa0405240:five_prime_UTR | 45.0% | |
| TGCATCTCATGCTTCCTGAA+AGG | + | chr3_2:39737680-39737699 | None:intergenic | 45.0% | |
| GGAGGAAATTGTTGCTGGCA+TGG | - | chr3_2:39735915-39735934 | Msa0405240:CDS | 50.0% | |
| GAATCCTTCTGCCATTGACC+AGG | - | chr3_2:39736126-39736145 | Msa0405240:CDS | 50.0% | |
| GGGGATGGTTCCAATTCATC+TGG | + | chr3_2:39736732-39736751 | None:intergenic | 50.0% | |
| GTGTTGCGAGCAAGAGAATC+AGG | - | chr3_2:39736926-39736945 | Msa0405240:CDS | 50.0% | |
| CGAGCAAGAGAATCAGGCAA+AGG | - | chr3_2:39736932-39736951 | Msa0405240:CDS | 50.0% | |
| CTGCTATGCAGGTATCTTGG+TGG | - | chr3_2:39737482-39737501 | Msa0405240:intron | 50.0% | |
| GCTATGCAGGTATCTTGGTG+GGG | - | chr3_2:39737484-39737503 | Msa0405240:intron | 50.0% | |
| !!! | TGCTGGCATGGGTTTTGGGT+TGG | - | chr3_2:39735927-39735946 | Msa0405240:CDS | 55.0% |
| GGTACCTGGTCAATGGCAGA+AGG | + | chr3_2:39736133-39736152 | None:intergenic | 55.0% | |
| GGATACCATGGAGCAGAACC+CGG | - | chr3_2:39736686-39736705 | Msa0405240:intron | 55.0% | |
| ATGAACCGGGTTCTGCTCCA+TGG | + | chr3_2:39736694-39736713 | None:intergenic | 55.0% | |
| ! | GGAAGCATGAGATGCACTGC+AGG | - | chr3_2:39737684-39737703 | Msa0405240:five_prime_UTR | 55.0% |
| GGAGCAGAACCCGGTTCATG+AGG | - | chr3_2:39736695-39736714 | Msa0405240:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 39735138 | 39737722 | 39735138 | ID=Msa0405240;Name=Msa0405240 |
| chr3_2 | mRNA | 39735138 | 39737722 | 39735138 | ID=Msa0405240-mRNA-1;Parent=Msa0405240;Name=Msa0405240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=240|1|1|1|0.75|0.6|5|13|381 |
| chr3_2 | exon | 39735138 | 39735367 | 39735138 | ID=Msa0405240-mRNA-1:exon:7761;Parent=Msa0405240-mRNA-1 |
| chr3_2 | exon | 39735780 | 39735949 | 39735780 | ID=Msa0405240-mRNA-1:exon:7760;Parent=Msa0405240-mRNA-1 |
| chr3_2 | exon | 39736027 | 39736308 | 39736027 | ID=Msa0405240-mRNA-1:exon:7759;Parent=Msa0405240-mRNA-1 |
| chr3_2 | exon | 39736713 | 39737239 | 39736713 | ID=Msa0405240-mRNA-1:exon:7758;Parent=Msa0405240-mRNA-1 |
| chr3_2 | exon | 39737533 | 39737722 | 39737533 | ID=Msa0405240-mRNA-1:exon:7757;Parent=Msa0405240-mRNA-1 |
| chr3_2 | five_prime_UTR | 39737533 | 39737722 | 39737533 | ID=Msa0405240-mRNA-1:five_prime_utr;Parent=Msa0405240-mRNA-1 |
| chr3_2 | five_prime_UTR | 39737190 | 39737239 | 39737190 | ID=Msa0405240-mRNA-1:five_prime_utr;Parent=Msa0405240-mRNA-1 |
| chr3_2 | CDS | 39736713 | 39737189 | 39736713 | ID=Msa0405240-mRNA-1:cds;Parent=Msa0405240-mRNA-1 |
| chr3_2 | CDS | 39736027 | 39736308 | 39736027 | ID=Msa0405240-mRNA-1:cds;Parent=Msa0405240-mRNA-1 |
| chr3_2 | CDS | 39735780 | 39735949 | 39735780 | ID=Msa0405240-mRNA-1:cds;Parent=Msa0405240-mRNA-1 |
| chr3_2 | CDS | 39735151 | 39735367 | 39735151 | ID=Msa0405240-mRNA-1:cds;Parent=Msa0405240-mRNA-1 |
| chr3_2 | three_prime_UTR | 39735138 | 39735150 | 39735138 | ID=Msa0405240-mRNA-1:three_prime_utr;Parent=Msa0405240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
