AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0407730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAGTAATTATGGAATATT+TGG 0.180018 3_2:-46414416 Msa0407730:five_prime_UTR
TGTGGTTAGCTTTGACTTTA+GGG 0.184467 3_2:-46414822 Msa0407730:five_prime_UTR
ATGTTGCAAAAGTATTTATT+AGG 0.216534 3_2:-46414663 Msa0407730:five_prime_UTR
TTGTGGTTAGCTTTGACTTT+AGG 0.227557 3_2:-46414823 Msa0407730:five_prime_UTR
ATCTTGCCCCAAACAGCTTA+TGG 0.274736 3_2:+46414510 None:intergenic
TATCATGATGGAACAATTAT+AGG 0.277634 3_2:+46414996 None:intergenic
CTCCTGATCATCACAGTAAA+AGG 0.283646 3_2:+46414438 None:intergenic
TTTCCCTTCCTCTTCCTTGC+TGG 0.288095 3_2:-46414932 Msa0407730:five_prime_UTR
TGGATAATTCTGCAGGAAAA+AGG 0.290322 3_2:-46414310 Msa0407730:five_prime_UTR
CTAGAAGCCATAAGCTGTTT+GGG 0.310222 3_2:-46414517 Msa0407730:five_prime_UTR
TGATCAGGAGTGAGTAATTA+TGG 0.311768 3_2:-46414425 Msa0407730:five_prime_UTR
AAATTGTTGCTGTGCTGTTT+GGG 0.331540 3_2:-46414548 Msa0407730:five_prime_UTR
AAGGAGGTAGAACTCAAGTT+AGG 0.334230 3_2:-46414785 Msa0407730:five_prime_UTR
TAAGTTACAGTTAAGCTGTT+TGG 0.340215 3_2:-46414149 Msa0407730:CDS
GGAAAGCTTTGGCAAGGATT+TGG 0.346050 3_2:+46415017 None:intergenic
GAGTACATCATGAGCTGAAT+TGG 0.350167 3_2:-46414111 Msa0407730:CDS
TGTTGCAAAAGTATTTATTA+GGG 0.356311 3_2:-46414662 Msa0407730:five_prime_UTR
ATTATGTATATTGGACTGTT+AGG 0.359865 3_2:-46414579 Msa0407730:five_prime_UTR
AACAGCTTAACTGTAACTTA+TGG 0.364660 3_2:+46414152 None:intergenic
CCGAATTCACTCCTTCCTCT+TGG 0.366416 3_2:-46414909 Msa0407730:five_prime_UTR
AGGTATAAGAAGTGATTAAT+TGG 0.370125 3_2:-46414731 Msa0407730:five_prime_UTR
GCTAGAAGCCATAAGCTGTT+TGG 0.379587 3_2:-46414518 Msa0407730:five_prime_UTR
GAAATTGTTGCTGTGCTGTT+TGG 0.379789 3_2:-46414549 Msa0407730:five_prime_UTR
TTTCCGAGTTCATTACTAAT+CGG 0.402134 3_2:+46414346 None:intergenic
GCATGCTTATGTTGCTGAAA+TGG 0.402854 3_2:-46414846 Msa0407730:five_prime_UTR
GACTTTAGGGACTGTATTTG+AGG 0.403112 3_2:-46414809 Msa0407730:five_prime_UTR
GAAATTTATATCCGATTTGA+AGG 0.410271 3_2:+46414377 None:intergenic
GATAATTGATTAATTTGAAG+TGG 0.420224 3_2:-46414977 Msa0407730:five_prime_UTR
ATCAAAACTCTTATAATCAT+AGG 0.424497 3_2:+46414208 None:intergenic
CCAAGAGGAAGGAGTGAATT+CGG 0.440352 3_2:+46414909 None:intergenic
GAACAATTATAGGAAAGCTT+TGG 0.442551 3_2:+46415006 None:intergenic
CTGTGAATGATTATGTATAT+TGG 0.443198 3_2:-46414588 Msa0407730:five_prime_UTR
AAGTTTAATTCCCTTCAAAT+CGG 0.449463 3_2:-46414388 Msa0407730:five_prime_UTR
AAATTATTATGATTGTTGTT+CGG 0.453250 3_2:-46414484 Msa0407730:five_prime_UTR
TCGGAAAGTGCGTTTGAAGT+TGG 0.455733 3_2:-46414330 Msa0407730:five_prime_UTR
AAGTTCATCTGTGTCACTCT+TGG 0.456761 3_2:-46412743 Msa0407730:CDS
GAGAGAGATTGGACAAGGGA+GGG 0.457922 3_2:+46415048 None:intergenic
TTCATCTGTGTCACTCTTGG+TGG 0.458234 3_2:-46412740 Msa0407730:CDS
ATTATGATTGTTGTTCGGAC+AGG 0.463586 3_2:-46414479 Msa0407730:five_prime_UTR
AAATTAATCAATTATCATGA+TGG 0.465157 3_2:+46414984 None:intergenic
TGGATTTAGACTAGTTAGAA+AGG 0.467465 3_2:-46414245 Msa0407730:five_prime_UTR
AGAGAGATTGGACAAGGGAG+GGG 0.473116 3_2:+46415049 None:intergenic
TCTGTGTCACTCTTGGTGGT+AGG 0.473983 3_2:-46412736 None:intergenic
CTCGAGCAGCGTGGATAACT+CGG 0.479794 3_2:-46414086 Msa0407730:CDS
TGATACTTTGCTTGCTACTA+CGG 0.482322 3_2:-46414041 Msa0407730:CDS
TGAGAGAGATTGGACAAGGG+AGG 0.484694 3_2:+46415047 None:intergenic
AGTACATCATGAGCTGAATT+GGG 0.491013 3_2:-46414110 Msa0407730:CDS
TTGAAGTTGGATAATTCTGC+AGG 0.492024 3_2:-46414317 Msa0407730:five_prime_UTR
CGTGAGATAGAGAGAAAGAA+AGG 0.495618 3_2:+46415076 None:intergenic
ATAATTGATTAATTTGAAGT+GGG 0.496711 3_2:-46414976 Msa0407730:five_prime_UTR
GGACTGTATTTGAGGAAAGG+AGG 0.500005 3_2:-46414801 Msa0407730:five_prime_UTR
AAGTATCAACTATCCAATCT+TGG 0.511051 3_2:+46414056 None:intergenic
AGGAGGTAGAACTCAAGTTA+GGG 0.514168 3_2:-46414784 Msa0407730:five_prime_UTR
TTGCGAAATGAGCTAAATTG+TGG 0.520903 3_2:-46414265 Msa0407730:five_prime_UTR
GAATTCGGCCAGCAAGGAAG+AGG 0.534414 3_2:+46414924 None:intergenic
TAGGGACTGTATTTGAGGAA+AGG 0.536169 3_2:-46414804 Msa0407730:five_prime_UTR
CTTGCTACTACGGAAGCAGT+TGG 0.538173 3_2:-46414031 Msa0407730:CDS
TTATGTTGCTGAAATGGTTG+TGG 0.542434 3_2:-46414840 Msa0407730:five_prime_UTR
TGTTGCTGTGCTGTTTGGGA+TGG 0.543910 3_2:-46414544 Msa0407730:five_prime_UTR
ATTATAGGAAAGCTTTGGCA+AGG 0.546118 3_2:+46415011 None:intergenic
TGTTTGGAGAAAAGTGCTTA+CGG 0.555668 3_2:-46414133 Msa0407730:CDS
AGGAGTGAATTCGGCCAGCA+AGG 0.558853 3_2:+46414918 None:intergenic
CAACTTGGAATTGAAGATGT+AGG 0.565947 3_2:-46414754 Msa0407730:five_prime_UTR
AAATTTATATCCGATTTGAA+GGG 0.575743 3_2:+46414378 None:intergenic
TCGGCCAGCAAGGAAGAGGA+AGG 0.597065 3_2:+46414928 None:intergenic
ATTCCGATTAGTAATGAACT+CGG 0.629078 3_2:-46414349 Msa0407730:five_prime_UTR
AAGCAGTTGGAGAGAAAATG+TGG 0.630940 3_2:-46414018 Msa0407730:CDS
CTTGGAATTGAAGATGTAGG+AGG 0.638210 3_2:-46414751 Msa0407730:five_prime_UTR
TAGAAGCCATAAGCTGTTTG+GGG 0.639981 3_2:-46414516 Msa0407730:five_prime_UTR
CGGCCAGCAAGGAAGAGGAA+GGG 0.652342 3_2:+46414929 None:intergenic
GAATTGGGACTCGAGCAGCG+TGG 0.739005 3_2:-46414095 Msa0407730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr3_2:46413890-46413909 Msa0407730:intron 0.0%
!! ATTATTATTATTATTATTAT+TGG - chr3_2:46413890-46413909 Msa0407730:intron 0.0%
!! TAATAATAATTAAAATAAGC+GGG + chr3_2:46413880-46413899 None:intergenic 10.0%
!! TAATAATAATTAAAATAAGC+GGG + chr3_2:46413880-46413899 None:intergenic 10.0%
!! AAATTAATCAATTATCATGA+TGG + chr3_2:46412855-46412874 None:intergenic 15.0%
!!! ATAATTGATTAATTTGAAGT+GGG - chr3_2:46412860-46412879 Msa0407730:intron 15.0%
!!! AAATTATTATGATTGTTGTT+CGG - chr3_2:46413352-46413371 Msa0407730:intron 15.0%
!! TATGTCATTATTTACTAAAA+TGG - chr3_2:46413953-46413972 Msa0407730:intron 15.0%
!! ATGTCATTATTTACTAAAAT+GGG - chr3_2:46413954-46413973 Msa0407730:intron 15.0%
!! TTTGAATTTGAATTTGAATT+TGG - chr3_2:46414051-46414070 Msa0407730:CDS 15.0%
!!! ATGTAAAACATTTTCAATTA+GGG + chr3_2:46414338-46414357 None:intergenic 15.0%
!!! AATGTAAAACATTTTCAATT+AGG + chr3_2:46414339-46414358 None:intergenic 15.0%
!! TTTAGTGAAAATAATCAAAT+GGG + chr3_2:46414472-46414491 None:intergenic 15.0%
!! ATTTAGTGAAAATAATCAAA+TGG + chr3_2:46414473-46414492 None:intergenic 15.0%
!! TTAGTGAAAATAAACAAAAT+GGG + chr3_2:46414633-46414652 None:intergenic 15.0%
!! TTTAGTGAAAATAAACAAAA+TGG + chr3_2:46414634-46414653 None:intergenic 15.0%
!!! GTTTTCTATATTTTCTTTAA+AGG - chr3_2:46414658-46414677 Msa0407730:five_prime_UTR 15.0%
!!! AAGGCTTTTATTTTAATTTT+CGG - chr3_2:46414749-46414768 Msa0407730:five_prime_UTR 15.0%
!! AAATTAATCAATTATCATGA+TGG + chr3_2:46412855-46412874 None:intergenic 15.0%
!!! ATAATTGATTAATTTGAAGT+GGG - chr3_2:46412860-46412879 Msa0407730:intron 15.0%
!!! AAATTATTATGATTGTTGTT+CGG - chr3_2:46413352-46413371 Msa0407730:intron 15.0%
!! TATGTCATTATTTACTAAAA+TGG - chr3_2:46413953-46413972 Msa0407730:intron 15.0%
!! ATGTCATTATTTACTAAAAT+GGG - chr3_2:46413954-46413973 Msa0407730:intron 15.0%
!! TTTGAATTTGAATTTGAATT+TGG - chr3_2:46414051-46414070 Msa0407730:CDS 15.0%
!!! ATGTAAAACATTTTCAATTA+GGG + chr3_2:46414338-46414357 None:intergenic 15.0%
!!! AATGTAAAACATTTTCAATT+AGG + chr3_2:46414339-46414358 None:intergenic 15.0%
!! TTTAGTGAAAATAATCAAAT+GGG + chr3_2:46414472-46414491 None:intergenic 15.0%
!! ATTTAGTGAAAATAATCAAA+TGG + chr3_2:46414473-46414492 None:intergenic 15.0%
!! TTAGTGAAAATAAACAAAAT+GGG + chr3_2:46414633-46414652 None:intergenic 15.0%
!! TTTAGTGAAAATAAACAAAA+TGG + chr3_2:46414634-46414653 None:intergenic 15.0%
!!! GTTTTCTATATTTTCTTTAA+AGG - chr3_2:46414658-46414677 Msa0407730:five_prime_UTR 15.0%
!!! AAGGCTTTTATTTTAATTTT+CGG - chr3_2:46414749-46414768 Msa0407730:five_prime_UTR 15.0%
!!! AGAAAAATCTCATTTTGTTT+GGG + chr3_2:46412740-46412759 None:intergenic 20.0%
!!! GATAATTGATTAATTTGAAG+TGG - chr3_2:46412859-46412878 Msa0407730:intron 20.0%
!!! TGTTTTTTTTTTGAGATTTG+AGG - chr3_2:46412963-46412982 Msa0407730:intron 20.0%
!!! GTTTTTTTTTTGAGATTTGA+GGG - chr3_2:46412964-46412983 Msa0407730:intron 20.0%
!!! ATGTTGCAAAAGTATTTATT+AGG - chr3_2:46413173-46413192 Msa0407730:intron 20.0%
!!! TGTTGCAAAAGTATTTATTA+GGG - chr3_2:46413174-46413193 Msa0407730:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG + chr3_2:46413461-46413480 None:intergenic 20.0%
!! ATCAAAACTCTTATAATCAT+AGG + chr3_2:46413631-46413650 None:intergenic 20.0%
!! TGTCATTATTTACTAAAATG+GGG - chr3_2:46413955-46413974 Msa0407730:intron 20.0%
!! ATAAAGTAGAGAAATTGAAA+CGG - chr3_2:46414090-46414109 Msa0407730:CDS 20.0%
!!! GAATGATGTTTTGAAAATTA+CGG - chr3_2:46414185-46414204 Msa0407730:CDS 20.0%
!!! AGGTTATTTATCAAGATTTT+CGG - chr3_2:46414678-46414697 Msa0407730:five_prime_UTR 20.0%
!!! TTTCGGCAATATATTTTTAA+AGG - chr3_2:46414730-46414749 Msa0407730:five_prime_UTR 20.0%
!!! CAGATTATTAGAATTTTAGA+CGG - chr3_2:46414897-46414916 Msa0407730:five_prime_UTR 20.0%
!!! AGAAAAATCTCATTTTGTTT+GGG + chr3_2:46412740-46412759 None:intergenic 20.0%
!!! GATAATTGATTAATTTGAAG+TGG - chr3_2:46412859-46412878 Msa0407730:intron 20.0%
!!! TGTTTTTTTTTTGAGATTTG+AGG - chr3_2:46412963-46412982 Msa0407730:intron 20.0%
!!! GTTTTTTTTTTGAGATTTGA+GGG - chr3_2:46412964-46412983 Msa0407730:intron 20.0%
!!! ATGTTGCAAAAGTATTTATT+AGG - chr3_2:46413173-46413192 Msa0407730:intron 20.0%
!!! TGTTGCAAAAGTATTTATTA+GGG - chr3_2:46413174-46413193 Msa0407730:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG + chr3_2:46413461-46413480 None:intergenic 20.0%
!! ATCAAAACTCTTATAATCAT+AGG + chr3_2:46413631-46413650 None:intergenic 20.0%
!! TGTCATTATTTACTAAAATG+GGG - chr3_2:46413955-46413974 Msa0407730:intron 20.0%
!! ATAAAGTAGAGAAATTGAAA+CGG - chr3_2:46414090-46414109 Msa0407730:CDS 20.0%
!!! GAATGATGTTTTGAAAATTA+CGG - chr3_2:46414185-46414204 Msa0407730:CDS 20.0%
!!! AGGTTATTTATCAAGATTTT+CGG - chr3_2:46414678-46414697 Msa0407730:five_prime_UTR 20.0%
!!! TTTCGGCAATATATTTTTAA+AGG - chr3_2:46414730-46414749 Msa0407730:five_prime_UTR 20.0%
!!! CAGATTATTAGAATTTTAGA+CGG - chr3_2:46414897-46414916 Msa0407730:five_prime_UTR 20.0%
!! GAGAAAAATCTCATTTTGTT+TGG + chr3_2:46412741-46412760 None:intergenic 25.0%
!! TATCATGATGGAACAATTAT+AGG + chr3_2:46412843-46412862 None:intergenic 25.0%
! AGGTATAAGAAGTGATTAAT+TGG - chr3_2:46413105-46413124 Msa0407730:intron 25.0%
! CTGTGAATGATTATGTATAT+TGG - chr3_2:46413248-46413267 Msa0407730:intron 25.0%
! ATTATGTATATTGGACTGTT+AGG - chr3_2:46413257-46413276 Msa0407730:intron 25.0%
! GTGAGTAATTATGGAATATT+TGG - chr3_2:46413420-46413439 Msa0407730:intron 25.0%
! AAGTTTAATTCCCTTCAAAT+CGG - chr3_2:46413448-46413467 Msa0407730:intron 25.0%
!! GAAATTTATATCCGATTTGA+AGG + chr3_2:46413462-46413481 None:intergenic 25.0%
!!! TTTCGGCAGTTTATTTTAAA+AGG - chr3_2:46414766-46414785 Msa0407730:five_prime_UTR 25.0%
! TTGAAGTATACCTATTTGAT+TGG - chr3_2:46414832-46414851 Msa0407730:five_prime_UTR 25.0%
! GTATATACTTCCAATCAAAT+AGG + chr3_2:46414845-46414864 None:intergenic 25.0%
!! GAGAAAAATCTCATTTTGTT+TGG + chr3_2:46412741-46412760 None:intergenic 25.0%
!! TATCATGATGGAACAATTAT+AGG + chr3_2:46412843-46412862 None:intergenic 25.0%
! AGGTATAAGAAGTGATTAAT+TGG - chr3_2:46413105-46413124 Msa0407730:intron 25.0%
! CTGTGAATGATTATGTATAT+TGG - chr3_2:46413248-46413267 Msa0407730:intron 25.0%
! ATTATGTATATTGGACTGTT+AGG - chr3_2:46413257-46413276 Msa0407730:intron 25.0%
! GTGAGTAATTATGGAATATT+TGG - chr3_2:46413420-46413439 Msa0407730:intron 25.0%
! AAGTTTAATTCCCTTCAAAT+CGG - chr3_2:46413448-46413467 Msa0407730:intron 25.0%
!! GAAATTTATATCCGATTTGA+AGG + chr3_2:46413462-46413481 None:intergenic 25.0%
!!! TTTCGGCAGTTTATTTTAAA+AGG - chr3_2:46414766-46414785 Msa0407730:five_prime_UTR 25.0%
! TTGAAGTATACCTATTTGAT+TGG - chr3_2:46414832-46414851 Msa0407730:five_prime_UTR 25.0%
! GTATATACTTCCAATCAAAT+AGG + chr3_2:46414845-46414864 None:intergenic 25.0%
GAACAATTATAGGAAAGCTT+TGG + chr3_2:46412833-46412852 None:intergenic 30.0%
ATTCAAAAAATCCAAGAGGA+AGG + chr3_2:46412941-46412960 None:intergenic 30.0%
CAACATTCAAAAAATCCAAG+AGG + chr3_2:46412945-46412964 None:intergenic 30.0%
ATTCCGATTAGTAATGAACT+CGG - chr3_2:46413487-46413506 Msa0407730:intron 30.0%
TTTCCGAGTTCATTACTAAT+CGG + chr3_2:46413493-46413512 None:intergenic 30.0%
! TGGATTTAGACTAGTTAGAA+AGG - chr3_2:46413591-46413610 Msa0407730:intron 30.0%
!! AAGAGTTTTGATCGAAGTTT+TGG - chr3_2:46413639-46413658 Msa0407730:intron 30.0%
!!! ATCGAAGTTTTGGATGAATT+CGG - chr3_2:46413649-46413668 Msa0407730:intron 30.0%
AACAGCTTAACTGTAACTTA+TGG + chr3_2:46413687-46413706 None:intergenic 30.0%
TAAGTTACAGTTAAGCTGTT+TGG - chr3_2:46413687-46413706 Msa0407730:intron 30.0%
AAGTATCAACTATCCAATCT+TGG + chr3_2:46413783-46413802 None:intergenic 30.0%
ATGACGAGGAAGATATTAAA+AGG + chr3_2:46413989-46414008 None:intergenic 30.0%
GTCATCGTTATATAAGTTCA+TGG - chr3_2:46414004-46414023 Msa0407730:CDS 30.0%
CGTTATATAAGTTCATGGAT+TGG - chr3_2:46414009-46414028 Msa0407730:CDS 30.0%
!! ATAAGTTCATGGATTGGATT+TGG - chr3_2:46414015-46414034 Msa0407730:CDS 30.0%
TTTCGTTATGTTGTGAAATG+TGG - chr3_2:46414143-46414162 Msa0407730:CDS 30.0%
ACCTAGTAGTGATTTCAATT+AGG - chr3_2:46414232-46414251 Msa0407730:five_prime_UTR 30.0%
ACCTAATTGAAATCACTACT+AGG + chr3_2:46414236-46414255 None:intergenic 30.0%
! TTTTCGGCAATATCTTTTAG+AGG - chr3_2:46414694-46414713 Msa0407730:five_prime_UTR 30.0%
! GAGGCTCTTATTATGATTTT+CGG - chr3_2:46414713-46414732 Msa0407730:five_prime_UTR 30.0%
TCTTCATGTCTTTACAATGT+TGG - chr3_2:46414801-46414820 Msa0407730:five_prime_UTR 30.0%
GAACAATTATAGGAAAGCTT+TGG + chr3_2:46412833-46412852 None:intergenic 30.0%
ATTCAAAAAATCCAAGAGGA+AGG + chr3_2:46412941-46412960 None:intergenic 30.0%
CAACATTCAAAAAATCCAAG+AGG + chr3_2:46412945-46412964 None:intergenic 30.0%
ATTCCGATTAGTAATGAACT+CGG - chr3_2:46413487-46413506 Msa0407730:intron 30.0%
TTTCCGAGTTCATTACTAAT+CGG + chr3_2:46413493-46413512 None:intergenic 30.0%
! TGGATTTAGACTAGTTAGAA+AGG - chr3_2:46413591-46413610 Msa0407730:intron 30.0%
!! AAGAGTTTTGATCGAAGTTT+TGG - chr3_2:46413639-46413658 Msa0407730:intron 30.0%
!!! ATCGAAGTTTTGGATGAATT+CGG - chr3_2:46413649-46413668 Msa0407730:intron 30.0%
AACAGCTTAACTGTAACTTA+TGG + chr3_2:46413687-46413706 None:intergenic 30.0%
TAAGTTACAGTTAAGCTGTT+TGG - chr3_2:46413687-46413706 Msa0407730:intron 30.0%
AAGTATCAACTATCCAATCT+TGG + chr3_2:46413783-46413802 None:intergenic 30.0%
ATGACGAGGAAGATATTAAA+AGG + chr3_2:46413989-46414008 None:intergenic 30.0%
GTCATCGTTATATAAGTTCA+TGG - chr3_2:46414004-46414023 Msa0407730:CDS 30.0%
CGTTATATAAGTTCATGGAT+TGG - chr3_2:46414009-46414028 Msa0407730:CDS 30.0%
!! ATAAGTTCATGGATTGGATT+TGG - chr3_2:46414015-46414034 Msa0407730:CDS 30.0%
TTTCGTTATGTTGTGAAATG+TGG - chr3_2:46414143-46414162 Msa0407730:CDS 30.0%
ACCTAGTAGTGATTTCAATT+AGG - chr3_2:46414232-46414251 Msa0407730:five_prime_UTR 30.0%
ACCTAATTGAAATCACTACT+AGG + chr3_2:46414236-46414255 None:intergenic 30.0%
! TTTTCGGCAATATCTTTTAG+AGG - chr3_2:46414694-46414713 Msa0407730:five_prime_UTR 30.0%
! GAGGCTCTTATTATGATTTT+CGG - chr3_2:46414713-46414732 Msa0407730:five_prime_UTR 30.0%
TCTTCATGTCTTTACAATGT+TGG - chr3_2:46414801-46414820 Msa0407730:five_prime_UTR 30.0%
!! TTTTGAGAGAGATTGGACAA+GGG + chr3_2:46412795-46412814 None:intergenic 35.0%
!! ATTTTGAGAGAGATTGGACA+AGG + chr3_2:46412796-46412815 None:intergenic 35.0%
!! TGGTGAATTTTGAGAGAGAT+TGG + chr3_2:46412802-46412821 None:intergenic 35.0%
! ATTATAGGAAAGCTTTGGCA+AGG + chr3_2:46412828-46412847 None:intergenic 35.0%
TTATGTTGCTGAAATGGTTG+TGG - chr3_2:46412996-46413015 Msa0407730:intron 35.0%
!! TTGTGGTTAGCTTTGACTTT+AGG - chr3_2:46413013-46413032 Msa0407730:intron 35.0%
!! TGTGGTTAGCTTTGACTTTA+GGG - chr3_2:46413014-46413033 Msa0407730:intron 35.0%
CAACTTGGAATTGAAGATGT+AGG - chr3_2:46413082-46413101 Msa0407730:intron 35.0%
!! AAATTGTTGCTGTGCTGTTT+GGG - chr3_2:46413288-46413307 Msa0407730:intron 35.0%
! ATTATGATTGTTGTTCGGAC+AGG - chr3_2:46413357-46413376 Msa0407730:intron 35.0%
! TACCTTTTACTGTGATGATC+AGG - chr3_2:46413396-46413415 Msa0407730:intron 35.0%
TGATCAGGAGTGAGTAATTA+TGG - chr3_2:46413411-46413430 Msa0407730:intron 35.0%
TTGAAGTTGGATAATTCTGC+AGG - chr3_2:46413519-46413538 Msa0407730:intron 35.0%
TGGATAATTCTGCAGGAAAA+AGG - chr3_2:46413526-46413545 Msa0407730:intron 35.0%
TTGCGAAATGAGCTAAATTG+TGG - chr3_2:46413571-46413590 Msa0407730:intron 35.0%
!! TGTTTGGAGAAAAGTGCTTA+CGG - chr3_2:46413703-46413722 Msa0407730:intron 35.0%
AGTACATCATGAGCTGAATT+GGG - chr3_2:46413726-46413745 Msa0407730:intron 35.0%
! TGATACTTTGCTTGCTACTA+CGG - chr3_2:46413795-46413814 Msa0407730:intron 35.0%
GAACTTATATAACGATGACG+AGG + chr3_2:46414003-46414022 None:intergenic 35.0%
!! TCATGGATTGGATTTGGATT+CGG - chr3_2:46414021-46414040 Msa0407730:CDS 35.0%
ATTGGATTTGGATTCGGATT+TGG - chr3_2:46414027-46414046 Msa0407730:CDS 35.0%
! TTGGAAGTATATACACTGTG+TGG - chr3_2:46414851-46414870 Msa0407730:five_prime_UTR 35.0%
! GTGGATTTTCATGCGTATAA+AGG - chr3_2:46414870-46414889 Msa0407730:five_prime_UTR 35.0%
AAATGAAAGAGTAAGCCACA+AGG + chr3_2:46415019-46415038 None:intergenic 35.0%
!! TTTTGAGAGAGATTGGACAA+GGG + chr3_2:46412795-46412814 None:intergenic 35.0%
!! ATTTTGAGAGAGATTGGACA+AGG + chr3_2:46412796-46412815 None:intergenic 35.0%
!! TGGTGAATTTTGAGAGAGAT+TGG + chr3_2:46412802-46412821 None:intergenic 35.0%
! ATTATAGGAAAGCTTTGGCA+AGG + chr3_2:46412828-46412847 None:intergenic 35.0%
TTATGTTGCTGAAATGGTTG+TGG - chr3_2:46412996-46413015 Msa0407730:intron 35.0%
!! TTGTGGTTAGCTTTGACTTT+AGG - chr3_2:46413013-46413032 Msa0407730:intron 35.0%
!! TGTGGTTAGCTTTGACTTTA+GGG - chr3_2:46413014-46413033 Msa0407730:intron 35.0%
CAACTTGGAATTGAAGATGT+AGG - chr3_2:46413082-46413101 Msa0407730:intron 35.0%
!! AAATTGTTGCTGTGCTGTTT+GGG - chr3_2:46413288-46413307 Msa0407730:intron 35.0%
! ATTATGATTGTTGTTCGGAC+AGG - chr3_2:46413357-46413376 Msa0407730:intron 35.0%
! TACCTTTTACTGTGATGATC+AGG - chr3_2:46413396-46413415 Msa0407730:intron 35.0%
TGATCAGGAGTGAGTAATTA+TGG - chr3_2:46413411-46413430 Msa0407730:intron 35.0%
TTGAAGTTGGATAATTCTGC+AGG - chr3_2:46413519-46413538 Msa0407730:intron 35.0%
TGGATAATTCTGCAGGAAAA+AGG - chr3_2:46413526-46413545 Msa0407730:intron 35.0%
TTGCGAAATGAGCTAAATTG+TGG - chr3_2:46413571-46413590 Msa0407730:intron 35.0%
!! TGTTTGGAGAAAAGTGCTTA+CGG - chr3_2:46413703-46413722 Msa0407730:intron 35.0%
AGTACATCATGAGCTGAATT+GGG - chr3_2:46413726-46413745 Msa0407730:intron 35.0%
! TGATACTTTGCTTGCTACTA+CGG - chr3_2:46413795-46413814 Msa0407730:intron 35.0%
GAACTTATATAACGATGACG+AGG + chr3_2:46414003-46414022 None:intergenic 35.0%
!! TCATGGATTGGATTTGGATT+CGG - chr3_2:46414021-46414040 Msa0407730:CDS 35.0%
ATTGGATTTGGATTCGGATT+TGG - chr3_2:46414027-46414046 Msa0407730:CDS 35.0%
! TTGGAAGTATATACACTGTG+TGG - chr3_2:46414851-46414870 Msa0407730:five_prime_UTR 35.0%
! GTGGATTTTCATGCGTATAA+AGG - chr3_2:46414870-46414889 Msa0407730:five_prime_UTR 35.0%
AAATGAAAGAGTAAGCCACA+AGG + chr3_2:46415019-46415038 None:intergenic 35.0%
CGTGAGATAGAGAGAAAGAA+AGG + chr3_2:46412763-46412782 None:intergenic 40.0%
GCATGCTTATGTTGCTGAAA+TGG - chr3_2:46412990-46413009 Msa0407730:intron 40.0%
! GACTTTAGGGACTGTATTTG+AGG - chr3_2:46413027-46413046 Msa0407730:intron 40.0%
TAGGGACTGTATTTGAGGAA+AGG - chr3_2:46413032-46413051 Msa0407730:intron 40.0%
AAGGAGGTAGAACTCAAGTT+AGG - chr3_2:46413051-46413070 Msa0407730:intron 40.0%
AGGAGGTAGAACTCAAGTTA+GGG - chr3_2:46413052-46413071 Msa0407730:intron 40.0%
! AGTTAGGGTTTTGCACAACT+TGG - chr3_2:46413067-46413086 Msa0407730:intron 40.0%
CTTGGAATTGAAGATGTAGG+AGG - chr3_2:46413085-46413104 Msa0407730:intron 40.0%
! GAAATTGTTGCTGTGCTGTT+TGG - chr3_2:46413287-46413306 Msa0407730:intron 40.0%
CTAGAAGCCATAAGCTGTTT+GGG - chr3_2:46413319-46413338 Msa0407730:intron 40.0%
TAGAAGCCATAAGCTGTTTG+GGG - chr3_2:46413320-46413339 Msa0407730:intron 40.0%
!! TTCGGACAGGTTCTGTTTTT+GGG - chr3_2:46413370-46413389 Msa0407730:intron 40.0%
CTCCTGATCATCACAGTAAA+AGG + chr3_2:46413401-46413420 None:intergenic 40.0%
TTCTGCAGGAAAAAGGCTTA+CGG - chr3_2:46413533-46413552 Msa0407730:intron 40.0%
GAGTACATCATGAGCTGAAT+TGG - chr3_2:46413725-46413744 Msa0407730:intron 40.0%
ACTCGGAAAAATGCCAAGAT+TGG - chr3_2:46413767-46413786 Msa0407730:intron 40.0%
AAGCAGTTGGAGAGAAAATG+TGG - chr3_2:46413818-46413837 Msa0407730:intron 40.0%
GGTAGAATTACCCCATTAGA+TGG - chr3_2:46414253-46414272 Msa0407730:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr3_2:46414375-46414394 Msa0407730:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr3_2:46414375-46414394 Msa0407730:five_prime_UTR 40.0%
! AAGTTCATCTGTGTCACTCT+TGG - chr3_2:46415093-46415112 Msa0407730:five_prime_UTR 40.0%
CGTGAGATAGAGAGAAAGAA+AGG + chr3_2:46412763-46412782 None:intergenic 40.0%
GCATGCTTATGTTGCTGAAA+TGG - chr3_2:46412990-46413009 Msa0407730:intron 40.0%
! GACTTTAGGGACTGTATTTG+AGG - chr3_2:46413027-46413046 Msa0407730:intron 40.0%
TAGGGACTGTATTTGAGGAA+AGG - chr3_2:46413032-46413051 Msa0407730:intron 40.0%
AAGGAGGTAGAACTCAAGTT+AGG - chr3_2:46413051-46413070 Msa0407730:intron 40.0%
AGGAGGTAGAACTCAAGTTA+GGG - chr3_2:46413052-46413071 Msa0407730:intron 40.0%
! AGTTAGGGTTTTGCACAACT+TGG - chr3_2:46413067-46413086 Msa0407730:intron 40.0%
CTTGGAATTGAAGATGTAGG+AGG - chr3_2:46413085-46413104 Msa0407730:intron 40.0%
! GAAATTGTTGCTGTGCTGTT+TGG - chr3_2:46413287-46413306 Msa0407730:intron 40.0%
CTAGAAGCCATAAGCTGTTT+GGG - chr3_2:46413319-46413338 Msa0407730:intron 40.0%
TAGAAGCCATAAGCTGTTTG+GGG - chr3_2:46413320-46413339 Msa0407730:intron 40.0%
!! TTCGGACAGGTTCTGTTTTT+GGG - chr3_2:46413370-46413389 Msa0407730:intron 40.0%
CTCCTGATCATCACAGTAAA+AGG + chr3_2:46413401-46413420 None:intergenic 40.0%
TTCTGCAGGAAAAAGGCTTA+CGG - chr3_2:46413533-46413552 Msa0407730:intron 40.0%
GAGTACATCATGAGCTGAAT+TGG - chr3_2:46413725-46413744 Msa0407730:intron 40.0%
ACTCGGAAAAATGCCAAGAT+TGG - chr3_2:46413767-46413786 Msa0407730:intron 40.0%
AAGCAGTTGGAGAGAAAATG+TGG - chr3_2:46413818-46413837 Msa0407730:intron 40.0%
GGTAGAATTACCCCATTAGA+TGG - chr3_2:46414253-46414272 Msa0407730:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr3_2:46414375-46414394 Msa0407730:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr3_2:46414375-46414394 Msa0407730:five_prime_UTR 40.0%
! AAGTTCATCTGTGTCACTCT+TGG - chr3_2:46415093-46415112 Msa0407730:five_prime_UTR 40.0%
! GGAAAGCTTTGGCAAGGATT+TGG + chr3_2:46412822-46412841 None:intergenic 45.0%
CCAAGAGGAAGGAGTGAATT+CGG + chr3_2:46412930-46412949 None:intergenic 45.0%
GGACTGTATTTGAGGAAAGG+AGG - chr3_2:46413035-46413054 Msa0407730:intron 45.0%
GCTAGAAGCCATAAGCTGTT+TGG - chr3_2:46413318-46413337 Msa0407730:intron 45.0%
ATCTTGCCCCAAACAGCTTA+TGG + chr3_2:46413329-46413348 None:intergenic 45.0%
! GTTCGGACAGGTTCTGTTTT+TGG - chr3_2:46413369-46413388 Msa0407730:intron 45.0%
! TCGGAAAGTGCGTTTGAAGT+TGG - chr3_2:46413506-46413525 Msa0407730:intron 45.0%
TCTGCAGGAAAAAGGCTTAC+GGG - chr3_2:46413534-46413553 Msa0407730:intron 45.0%
GGTTATAATGACGACGACCT+AGG - chr3_2:46414206-46414225 Msa0407730:CDS 45.0%
AATCACTACTAGGTGCACCT+AGG + chr3_2:46414226-46414245 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr3_2:46414284-46414303 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr3_2:46414285-46414304 None:intergenic 45.0%
TAATGGTGGCCTATCCATAG+GGG + chr3_2:46414406-46414425 None:intergenic 45.0%
CTAATGGTGGCCTATCCATA+GGG + chr3_2:46414407-46414426 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr3_2:46414284-46414303 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr3_2:46414285-46414304 None:intergenic 45.0%
CCAACTAGAAGGGAAACACA+CGG + chr3_2:46414971-46414990 None:intergenic 45.0%
! TGTGTTTCCCTTCTAGTTGG+TGG - chr3_2:46414971-46414990 Msa0407730:five_prime_UTR 45.0%
ACAACCACCACCAACTAGAA+GGG + chr3_2:46414981-46415000 None:intergenic 45.0%
AACAACCACCACCAACTAGA+AGG + chr3_2:46414982-46415001 None:intergenic 45.0%
TGTCTCTCACTAAGTCCTTG+TGG - chr3_2:46415001-46415020 Msa0407730:five_prime_UTR 45.0%
! TTCATCTGTGTCACTCTTGG+TGG - chr3_2:46415096-46415115 Msa0407730:five_prime_UTR 45.0%
! GGAAAGCTTTGGCAAGGATT+TGG + chr3_2:46412822-46412841 None:intergenic 45.0%
CCAAGAGGAAGGAGTGAATT+CGG + chr3_2:46412930-46412949 None:intergenic 45.0%
GGACTGTATTTGAGGAAAGG+AGG - chr3_2:46413035-46413054 Msa0407730:intron 45.0%
GCTAGAAGCCATAAGCTGTT+TGG - chr3_2:46413318-46413337 Msa0407730:intron 45.0%
ATCTTGCCCCAAACAGCTTA+TGG + chr3_2:46413329-46413348 None:intergenic 45.0%
! GTTCGGACAGGTTCTGTTTT+TGG - chr3_2:46413369-46413388 Msa0407730:intron 45.0%
! TCGGAAAGTGCGTTTGAAGT+TGG - chr3_2:46413506-46413525 Msa0407730:intron 45.0%
TCTGCAGGAAAAAGGCTTAC+GGG - chr3_2:46413534-46413553 Msa0407730:intron 45.0%
GGTTATAATGACGACGACCT+AGG - chr3_2:46414206-46414225 Msa0407730:CDS 45.0%
AATCACTACTAGGTGCACCT+AGG + chr3_2:46414226-46414245 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr3_2:46414284-46414303 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr3_2:46414285-46414304 None:intergenic 45.0%
TAATGGTGGCCTATCCATAG+GGG + chr3_2:46414406-46414425 None:intergenic 45.0%
CTAATGGTGGCCTATCCATA+GGG + chr3_2:46414407-46414426 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr3_2:46414284-46414303 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr3_2:46414285-46414304 None:intergenic 45.0%
CCAACTAGAAGGGAAACACA+CGG + chr3_2:46414971-46414990 None:intergenic 45.0%
! TGTGTTTCCCTTCTAGTTGG+TGG - chr3_2:46414971-46414990 Msa0407730:five_prime_UTR 45.0%
ACAACCACCACCAACTAGAA+GGG + chr3_2:46414981-46415000 None:intergenic 45.0%
AACAACCACCACCAACTAGA+AGG + chr3_2:46414982-46415001 None:intergenic 45.0%
TGTCTCTCACTAAGTCCTTG+TGG - chr3_2:46415001-46415020 Msa0407730:five_prime_UTR 45.0%
! TTCATCTGTGTCACTCTTGG+TGG - chr3_2:46415096-46415115 Msa0407730:five_prime_UTR 45.0%
!! ATAATAATAATTAAAATAAG+CGG + chr3_2:46413881-46413900 None:intergenic 5.0%
!! ATAATAATAATTAAAATAAG+CGG + chr3_2:46413881-46413900 None:intergenic 5.0%
AGAGAGATTGGACAAGGGAG+GGG + chr3_2:46412790-46412809 None:intergenic 50.0%
GAGAGAGATTGGACAAGGGA+GGG + chr3_2:46412791-46412810 None:intergenic 50.0%
TGAGAGAGATTGGACAAGGG+AGG + chr3_2:46412792-46412811 None:intergenic 50.0%
TTTCCCTTCCTCTTCCTTGC+TGG - chr3_2:46412904-46412923 Msa0407730:intron 50.0%
CCGAATTCACTCCTTCCTCT+TGG - chr3_2:46412927-46412946 Msa0407730:intron 50.0%
!! TGTTGCTGTGCTGTTTGGGA+TGG - chr3_2:46413292-46413311 Msa0407730:intron 50.0%
CTTGCTACTACGGAAGCAGT+TGG - chr3_2:46413805-46413824 Msa0407730:intron 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr3_2:46414286-46414305 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr3_2:46414283-46414302 Msa0407730:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr3_2:46414286-46414305 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
AGGAGAGGGCTATCAATGAG+AGG - chr3_2:46414306-46414325 Msa0407730:five_prime_UTR 50.0%
CCTAATGGTGGCCTATCCAT+AGG + chr3_2:46414408-46414427 None:intergenic 50.0%
CCTATGGATAGGCCACCATT+AGG - chr3_2:46414405-46414424 Msa0407730:five_prime_UTR 50.0%
ATGGATAGGCCACCATTAGG+AGG - chr3_2:46414408-46414427 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr3_2:46414286-46414305 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr3_2:46414283-46414302 Msa0407730:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr3_2:46414286-46414305 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
CCGTGTGTTTCCCTTCTAGT+TGG - chr3_2:46414968-46414987 Msa0407730:five_prime_UTR 50.0%
!! GTTTCCCTTCTAGTTGGTGG+TGG - chr3_2:46414974-46414993 Msa0407730:five_prime_UTR 50.0%
AGAGAGATTGGACAAGGGAG+GGG + chr3_2:46412790-46412809 None:intergenic 50.0%
GAGAGAGATTGGACAAGGGA+GGG + chr3_2:46412791-46412810 None:intergenic 50.0%
TGAGAGAGATTGGACAAGGG+AGG + chr3_2:46412792-46412811 None:intergenic 50.0%
TTTCCCTTCCTCTTCCTTGC+TGG - chr3_2:46412904-46412923 Msa0407730:intron 50.0%
CCGAATTCACTCCTTCCTCT+TGG - chr3_2:46412927-46412946 Msa0407730:intron 50.0%
!! TGTTGCTGTGCTGTTTGGGA+TGG - chr3_2:46413292-46413311 Msa0407730:intron 50.0%
CTTGCTACTACGGAAGCAGT+TGG - chr3_2:46413805-46413824 Msa0407730:intron 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr3_2:46414286-46414305 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr3_2:46414283-46414302 Msa0407730:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr3_2:46414286-46414305 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
AGGAGAGGGCTATCAATGAG+AGG - chr3_2:46414306-46414325 Msa0407730:five_prime_UTR 50.0%
CCTAATGGTGGCCTATCCAT+AGG + chr3_2:46414408-46414427 None:intergenic 50.0%
CCTATGGATAGGCCACCATT+AGG - chr3_2:46414405-46414424 Msa0407730:five_prime_UTR 50.0%
ATGGATAGGCCACCATTAGG+AGG - chr3_2:46414408-46414427 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr3_2:46414286-46414305 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr3_2:46414283-46414302 Msa0407730:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr3_2:46414286-46414305 Msa0407730:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr3_2:46414301-46414320 None:intergenic 50.0%
CCGTGTGTTTCCCTTCTAGT+TGG - chr3_2:46414968-46414987 Msa0407730:five_prime_UTR 50.0%
!! GTTTCCCTTCTAGTTGGTGG+TGG - chr3_2:46414974-46414993 Msa0407730:five_prime_UTR 50.0%
GAATTCGGCCAGCAAGGAAG+AGG + chr3_2:46412915-46412934 None:intergenic 55.0%
AGGAGTGAATTCGGCCAGCA+AGG + chr3_2:46412921-46412940 None:intergenic 55.0%
CTCGAGCAGCGTGGATAACT+CGG - chr3_2:46413750-46413769 Msa0407730:intron 55.0%
TAGGGGCGGCTCCATCTAAT+GGG + chr3_2:46414267-46414286 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+TGG + chr3_2:46414268-46414287 None:intergenic 55.0%
ATTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414267-46414286 Msa0407730:five_prime_UTR 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414291-46414310 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr3_2:46414268-46414287 None:intergenic 55.0%
TAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414413-46414432 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr3_2:46414429-46414448 Msa0407730:five_prime_UTR 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr3_2:46414268-46414287 None:intergenic 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414291-46414310 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr3_2:46414429-46414448 Msa0407730:five_prime_UTR 55.0%
GAATTCGGCCAGCAAGGAAG+AGG + chr3_2:46412915-46412934 None:intergenic 55.0%
AGGAGTGAATTCGGCCAGCA+AGG + chr3_2:46412921-46412940 None:intergenic 55.0%
CTCGAGCAGCGTGGATAACT+CGG - chr3_2:46413750-46413769 Msa0407730:intron 55.0%
TAGGGGCGGCTCCATCTAAT+GGG + chr3_2:46414267-46414286 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+TGG + chr3_2:46414268-46414287 None:intergenic 55.0%
ATTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414267-46414286 Msa0407730:five_prime_UTR 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414291-46414310 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr3_2:46414268-46414287 None:intergenic 55.0%
TAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414413-46414432 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr3_2:46414429-46414448 Msa0407730:five_prime_UTR 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr3_2:46414268-46414287 None:intergenic 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr3_2:46414291-46414310 Msa0407730:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr3_2:46414292-46414311 Msa0407730:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr3_2:46414298-46414317 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr3_2:46414429-46414448 Msa0407730:five_prime_UTR 55.0%
CGGCCAGCAAGGAAGAGGAA+GGG + chr3_2:46412910-46412929 None:intergenic 60.0%
TCGGCCAGCAAGGAAGAGGA+AGG + chr3_2:46412911-46412930 None:intergenic 60.0%
GAATTGGGACTCGAGCAGCG+TGG - chr3_2:46413741-46413760 Msa0407730:intron 60.0%
AGGGGCGGCTCCATCTAATG+GGG + chr3_2:46414266-46414285 None:intergenic 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr3_2:46414272-46414291 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr3_2:46414281-46414300 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414389-46414408 Msa0407730:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAT+AGG - chr3_2:46414394-46414413 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTATCCATAGGGG+CGG + chr3_2:46414403-46414422 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414389-46414408 Msa0407730:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr3_2:46414272-46414291 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr3_2:46414281-46414300 None:intergenic 60.0%
CGGCCAGCAAGGAAGAGGAA+GGG + chr3_2:46412910-46412929 None:intergenic 60.0%
TCGGCCAGCAAGGAAGAGGA+AGG + chr3_2:46412911-46412930 None:intergenic 60.0%
GAATTGGGACTCGAGCAGCG+TGG - chr3_2:46413741-46413760 Msa0407730:intron 60.0%
AGGGGCGGCTCCATCTAATG+GGG + chr3_2:46414266-46414285 None:intergenic 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr3_2:46414272-46414291 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr3_2:46414281-46414300 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414389-46414408 Msa0407730:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAT+AGG - chr3_2:46414394-46414413 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTATCCATAGGGG+CGG + chr3_2:46414403-46414422 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr3_2:46414389-46414408 Msa0407730:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr3_2:46414272-46414291 Msa0407730:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr3_2:46414281-46414300 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 46412737 46415121 46412737 ID=Msa0407730;Name=Msa0407730
chr3_2 mRNA 46412737 46415121 46412737 ID=Msa0407730-mRNA-1;Parent=Msa0407730;Name=Msa0407730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=894|1|0.5|1|1|1|2|0|97
chr3_2 exon 46412737 46412804 46412737 ID=Msa0407730-mRNA-1:exon:8988;Parent=Msa0407730-mRNA-1
chr3_2 exon 46414002 46415121 46414002 ID=Msa0407730-mRNA-1:exon:8987;Parent=Msa0407730-mRNA-1
chr3_2 five_prime_UTR 46414228 46415121 46414228 ID=Msa0407730-mRNA-1:five_prime_utr;Parent=Msa0407730-mRNA-1
chr3_2 CDS 46414002 46414227 46414002 ID=Msa0407730-mRNA-1:cds;Parent=Msa0407730-mRNA-1
chr3_2 CDS 46412737 46412804 46412737 ID=Msa0407730-mRNA-1:cds;Parent=Msa0407730-mRNA-1
Gene Sequence

>Msa0407730

ATGATTATAAGAGTTTTGATCGAAGTTTTGGATGAATTCGGAACACGCAGAAGCCATAAGTTACAGTTAAGCTGTTTGGAGAAAAGTGCTTACGGAGTACATCATGAGCTGAATTGGGACTCGAGCAGCGTGGATAACTCGGAAAAATGCCAAGATTGGATAGTTGATACTTTGCTTGCTACTACGGAAGCAGTTGGAGAGAAAATGTGGTTGATTCGACATAGCTATTTTCAAGCAGCTAAGTATAAAGATGATAGTAGACTTGAAGTTCATCTGTGTCACTCTTGGTGGTAG
Protein sequence

>Msa0407730

MIIRVLIEVLDEFGTRRSHKLQLSCLEKSAYGVHHELNWDSSSVDNSEKCQDWIVDTLLATTEAVGEKMWLIRHSYFQAAKYKDDSRLEVHLCHSWW*