AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAGTAATTATGGAATATT+TGG 0.180018 8_1:-66312764 Msa1208280:five_prime_UTR
TGTGGTTAGCTTTGACTTTA+GGG 0.184467 8_1:-66313170 Msa1208280:five_prime_UTR
ATGTTGCAAAAGTATTTATT+AGG 0.216534 8_1:-66313011 Msa1208280:five_prime_UTR
TTGTGGTTAGCTTTGACTTT+AGG 0.227557 8_1:-66313171 Msa1208280:five_prime_UTR
ATCTTGCCCCAAACAGCTTA+TGG 0.274736 8_1:+66312858 None:intergenic
TATCATGATGGAACAATTAT+AGG 0.277634 8_1:+66313344 None:intergenic
CTCCTGATCATCACAGTAAA+AGG 0.283646 8_1:+66312786 None:intergenic
TGGATAATTCTGCTGGAAAA+AGG 0.285711 8_1:-66312658 Msa1208280:five_prime_UTR
TTTCCCTTCCTCTTCCTTGC+TGG 0.287685 8_1:-66313279 Msa1208280:five_prime_UTR
CTAGAAGCCATAAGCTGTTT+GGG 0.310222 8_1:-66312865 Msa1208280:five_prime_UTR
TGATCAGGAGTGAGTAATTA+TGG 0.311768 8_1:-66312773 Msa1208280:five_prime_UTR
AAGAAGGTAGAACTCAAGTT+AGG 0.321149 8_1:-66313133 Msa1208280:five_prime_UTR
AAATTGTTGCTGTGCTGTTT+GGG 0.331540 8_1:-66312896 Msa1208280:five_prime_UTR
TAAGTTACAGTTAAGCTGTT+TGG 0.340215 8_1:-66312497 Msa1208280:CDS
GGAAAGCTTTGGCAAGGATT+TGG 0.346050 8_1:+66313365 None:intergenic
GAGTACATCATGAGCTGAAT+TGG 0.350167 8_1:-66312459 Msa1208280:CDS
TGTTGCAAAAGTATTTATTA+GGG 0.356311 8_1:-66313010 Msa1208280:five_prime_UTR
ATTATGTATATTGGACTGTT+AGG 0.359865 8_1:-66312927 Msa1208280:five_prime_UTR
AACAGCTTAACTGTAACTTA+TGG 0.364660 8_1:+66312500 None:intergenic
CCGAATTCACTCCTTCCTCT+TGG 0.366416 8_1:-66313256 Msa1208280:five_prime_UTR
AGGTATAAGAAGTGATTAAT+TGG 0.370125 8_1:-66313079 Msa1208280:five_prime_UTR
GCTAGAAGCCATAAGCTGTT+TGG 0.379587 8_1:-66312866 Msa1208280:five_prime_UTR
GAAATTGTTGCTGTGCTGTT+TGG 0.379789 8_1:-66312897 Msa1208280:five_prime_UTR
TTTCCGAGTTCATTACTAAT+CGG 0.402134 8_1:+66312694 None:intergenic
GCATGCTTATGTTGCTGAAA+TGG 0.402854 8_1:-66313194 Msa1208280:five_prime_UTR
GACTTTAGGGACTGTATTTG+AGG 0.403112 8_1:-66313157 Msa1208280:five_prime_UTR
AAAATTTATATCCGATTTGA+AGG 0.403451 8_1:+66312725 None:intergenic
GATAATTGATTAATTTGAAG+TGG 0.420224 8_1:-66313325 Msa1208280:five_prime_UTR
ATCAAAACTCTTATAATCAT+AGG 0.424497 8_1:+66312556 None:intergenic
CCAAGAGGAAGGAGTGAATT+CGG 0.440352 8_1:+66313256 None:intergenic
GAACAATTATAGGAAAGCTT+TGG 0.442551 8_1:+66313354 None:intergenic
CTGTGAATGATTATGTATAT+TGG 0.443198 8_1:-66312936 Msa1208280:five_prime_UTR
TTGAAGTTGGATAATTCTGC+TGG 0.447928 8_1:-66312665 Msa1208280:five_prime_UTR
GGACTGTATTTGAGGAAAGA+AGG 0.448451 8_1:-66313149 Msa1208280:five_prime_UTR
AAGTTTAATTCCCTTCAAAT+CGG 0.449463 8_1:-66312736 Msa1208280:five_prime_UTR
AAATTATTATGATTGTTGTT+CGG 0.453250 8_1:-66312832 Msa1208280:five_prime_UTR
TCGGAAAGTGCGTTTGAAGT+TGG 0.455733 8_1:-66312678 Msa1208280:five_prime_UTR
AAGTTCATCTGTGTCACTCT+TGG 0.456761 8_1:-66311100 Msa1208280:CDS
GAGAGAGATTGGACAAGGGA+GGG 0.457922 8_1:+66313396 None:intergenic
TTCATCTGTGTCACTCTTGG+TGG 0.458234 8_1:-66311097 Msa1208280:CDS
ATTATGATTGTTGTTCGGAC+AGG 0.463586 8_1:-66312827 Msa1208280:five_prime_UTR
AAATTAATCAATTATCATGA+TGG 0.465157 8_1:+66313332 None:intergenic
TGGATTTAGACTAGTTAGAA+AGG 0.467465 8_1:-66312593 Msa1208280:five_prime_UTR
AGAGAGATTGGACAAGGGAG+GGG 0.473116 8_1:+66313397 None:intergenic
TCTGTGTCACTCTTGGTGGT+AGG 0.473983 8_1:-66311093 None:intergenic
CTCGAGCAGCGTGGATAACT+CGG 0.479794 8_1:-66312434 Msa1208280:CDS
TGATACTTTGCTTGCTACTA+CGG 0.482322 8_1:-66312389 Msa1208280:CDS
TGAGAGAGATTGGACAAGGG+AGG 0.484694 8_1:+66313395 None:intergenic
AGTACATCATGAGCTGAATT+GGG 0.491013 8_1:-66312458 Msa1208280:CDS
CGTGAGATAGAGAGAAAGAA+AGG 0.495618 8_1:+66313424 None:intergenic
ATAATTGATTAATTTGAAGT+GGG 0.496711 8_1:-66313324 Msa1208280:five_prime_UTR
AAGTATCAACTATCCAATCT+TGG 0.511051 8_1:+66312404 None:intergenic
AGAAGGTAGAACTCAAGTTA+GGG 0.520479 8_1:-66313132 Msa1208280:five_prime_UTR
TTGCGAAATGAGCTAAATTG+TGG 0.520903 8_1:-66312613 Msa1208280:five_prime_UTR
GAATTCGGCCAGCAAGGAAG+AGG 0.534414 8_1:+66313271 None:intergenic
CTTGCTACTACGGAAGCAGT+TGG 0.538173 8_1:-66312379 Msa1208280:CDS
TTATGTTGCTGAAATGGTTG+TGG 0.542434 8_1:-66313188 Msa1208280:five_prime_UTR
TGTTGCTGTGCTGTTTGGGA+TGG 0.543910 8_1:-66312892 Msa1208280:five_prime_UTR
ATTATAGGAAAGCTTTGGCA+AGG 0.546118 8_1:+66313359 None:intergenic
TGTTTGGAGAAAAGTGCTTA+CGG 0.555668 8_1:-66312481 Msa1208280:CDS
AGGAGTGAATTCGGCCAGCA+AGG 0.558853 8_1:+66313265 None:intergenic
CAACTTGGAATTGAAGATGT+AGG 0.565947 8_1:-66313102 Msa1208280:five_prime_UTR
AAATTTATATCCGATTTGAA+GGG 0.568923 8_1:+66312726 None:intergenic
TCGGCCAGCAAGGAAGAGGA+AGG 0.597065 8_1:+66313275 None:intergenic
ATTCCGATTAGTAATGAACT+CGG 0.629078 8_1:-66312697 Msa1208280:five_prime_UTR
AAGCAGTTGGAGAGAAAATG+TGG 0.630940 8_1:-66312366 Msa1208280:CDS
CTTGGAATTGAAGATGTAGG+AGG 0.638210 8_1:-66313099 Msa1208280:five_prime_UTR
TAGAAGCCATAAGCTGTTTG+GGG 0.639981 8_1:-66312864 Msa1208280:five_prime_UTR
CGGCCAGCAAGGAAGAGGAA+GGG 0.652342 8_1:+66313276 None:intergenic
GAATTGGGACTCGAGCAGCG+TGG 0.739005 8_1:-66312443 Msa1208280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr8_1:66312249-66312268 Msa1208280:intron 0.0%
!! ATTATTATTATTATTATTAT+TGG - chr8_1:66312249-66312268 Msa1208280:intron 0.0%
!! TAATAATAATTAAAATAAGC+GGG + chr8_1:66312239-66312258 None:intergenic 10.0%
!! TAATAATAATTAAAATAAGC+GGG + chr8_1:66312239-66312258 None:intergenic 10.0%
!!! AAAAAATCTCATTTTTGTTT+GGG + chr8_1:66311097-66311116 None:intergenic 15.0%
!! AAATTAATCAATTATCATGA+TGG + chr8_1:66311214-66311233 None:intergenic 15.0%
!!! ATAATTGATTAATTTGAAGT+GGG - chr8_1:66311219-66311238 Msa1208280:intron 15.0%
!!! AAATTATTATGATTGTTGTT+CGG - chr8_1:66311711-66311730 Msa1208280:intron 15.0%
!! TATGTCATTATTTACTAAAA+TGG - chr8_1:66312315-66312334 Msa1208280:intron 15.0%
!! ATGTCATTATTTACTAAAAT+GGG - chr8_1:66312316-66312335 Msa1208280:intron 15.0%
!!! ATGTAAAACATTTTCAATTA+GGG + chr8_1:66312684-66312703 None:intergenic 15.0%
!!! AATGTAAAACATTTTCAATT+AGG + chr8_1:66312685-66312704 None:intergenic 15.0%
!! TTTAGTGAAAATAATCAAAT+GGG + chr8_1:66312818-66312837 None:intergenic 15.0%
!! ATTTAGTGAAAATAATCAAA+TGG + chr8_1:66312819-66312838 None:intergenic 15.0%
!! TTAGTGAAAATAAACAAAAT+GGG + chr8_1:66312979-66312998 None:intergenic 15.0%
!! TTTAGTGAAAATAAACAAAA+TGG + chr8_1:66312980-66312999 None:intergenic 15.0%
!!! GTTTTCTATATTTTCTTTAA+AGG - chr8_1:66313004-66313023 Msa1208280:five_prime_UTR 15.0%
!!! AATGCTTTTATTTTGATTTT+CGG - chr8_1:66313095-66313114 Msa1208280:five_prime_UTR 15.0%
!!! AAAAAATCTCATTTTTGTTT+GGG + chr8_1:66311097-66311116 None:intergenic 15.0%
!! AAATTAATCAATTATCATGA+TGG + chr8_1:66311214-66311233 None:intergenic 15.0%
!!! ATAATTGATTAATTTGAAGT+GGG - chr8_1:66311219-66311238 Msa1208280:intron 15.0%
!!! AAATTATTATGATTGTTGTT+CGG - chr8_1:66311711-66311730 Msa1208280:intron 15.0%
!! TATGTCATTATTTACTAAAA+TGG - chr8_1:66312315-66312334 Msa1208280:intron 15.0%
!! ATGTCATTATTTACTAAAAT+GGG - chr8_1:66312316-66312335 Msa1208280:intron 15.0%
!!! ATGTAAAACATTTTCAATTA+GGG + chr8_1:66312684-66312703 None:intergenic 15.0%
!!! AATGTAAAACATTTTCAATT+AGG + chr8_1:66312685-66312704 None:intergenic 15.0%
!! TTTAGTGAAAATAATCAAAT+GGG + chr8_1:66312818-66312837 None:intergenic 15.0%
!! ATTTAGTGAAAATAATCAAA+TGG + chr8_1:66312819-66312838 None:intergenic 15.0%
!! TTAGTGAAAATAAACAAAAT+GGG + chr8_1:66312979-66312998 None:intergenic 15.0%
!! TTTAGTGAAAATAAACAAAA+TGG + chr8_1:66312980-66312999 None:intergenic 15.0%
!!! GTTTTCTATATTTTCTTTAA+AGG - chr8_1:66313004-66313023 Msa1208280:five_prime_UTR 15.0%
!!! AATGCTTTTATTTTGATTTT+CGG - chr8_1:66313095-66313114 Msa1208280:five_prime_UTR 15.0%
!!! GAAAAAATCTCATTTTTGTT+TGG + chr8_1:66311098-66311117 None:intergenic 20.0%
!!! GATAATTGATTAATTTGAAG+TGG - chr8_1:66311218-66311237 Msa1208280:intron 20.0%
!!! TTGTTTTTTTTTGAGATTTG+AGG - chr8_1:66311322-66311341 Msa1208280:intron 20.0%
!!! TGTTTTTTTTTGAGATTTGA+GGG - chr8_1:66311323-66311342 Msa1208280:intron 20.0%
!!! ATGTTGCAAAAGTATTTATT+AGG - chr8_1:66311532-66311551 Msa1208280:intron 20.0%
!!! TGTTGCAAAAGTATTTATTA+GGG - chr8_1:66311533-66311552 Msa1208280:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG + chr8_1:66311820-66311839 None:intergenic 20.0%
!!! AAAATTTATATCCGATTTGA+AGG + chr8_1:66311821-66311840 None:intergenic 20.0%
!! ATCAAAACTCTTATAATCAT+AGG + chr8_1:66311990-66312009 None:intergenic 20.0%
!! TGTCATTATTTACTAAAATG+GGG - chr8_1:66312317-66312336 Msa1208280:intron 20.0%
!!! GAATGATGTTTTGAAAATTA+CGG - chr8_1:66312531-66312550 Msa1208280:CDS 20.0%
!!! AGGTTATTTATCAAGATTTT+CGG - chr8_1:66313024-66313043 Msa1208280:five_prime_UTR 20.0%
!! TCATAATAAGAGAATCTAAA+AGG + chr8_1:66313055-66313074 None:intergenic 20.0%
!!! GATTCTCTTATTATGATTTT+TGG - chr8_1:66313059-66313078 Msa1208280:five_prime_UTR 20.0%
!!! TTTCGGCAATTTATTTTAAA+AGG - chr8_1:66313112-66313131 Msa1208280:five_prime_UTR 20.0%
!!! CAGATTATTAGAATTTTAGA+CGG - chr8_1:66313243-66313262 Msa1208280:five_prime_UTR 20.0%
!!! GAAAAAATCTCATTTTTGTT+TGG + chr8_1:66311098-66311117 None:intergenic 20.0%
!!! GATAATTGATTAATTTGAAG+TGG - chr8_1:66311218-66311237 Msa1208280:intron 20.0%
!!! TTGTTTTTTTTTGAGATTTG+AGG - chr8_1:66311322-66311341 Msa1208280:intron 20.0%
!!! TGTTTTTTTTTGAGATTTGA+GGG - chr8_1:66311323-66311342 Msa1208280:intron 20.0%
!!! ATGTTGCAAAAGTATTTATT+AGG - chr8_1:66311532-66311551 Msa1208280:intron 20.0%
!!! TGTTGCAAAAGTATTTATTA+GGG - chr8_1:66311533-66311552 Msa1208280:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG + chr8_1:66311820-66311839 None:intergenic 20.0%
!!! AAAATTTATATCCGATTTGA+AGG + chr8_1:66311821-66311840 None:intergenic 20.0%
!! ATCAAAACTCTTATAATCAT+AGG + chr8_1:66311990-66312009 None:intergenic 20.0%
!! TGTCATTATTTACTAAAATG+GGG - chr8_1:66312317-66312336 Msa1208280:intron 20.0%
!!! GAATGATGTTTTGAAAATTA+CGG - chr8_1:66312531-66312550 Msa1208280:CDS 20.0%
!!! AGGTTATTTATCAAGATTTT+CGG - chr8_1:66313024-66313043 Msa1208280:five_prime_UTR 20.0%
!! TCATAATAAGAGAATCTAAA+AGG + chr8_1:66313055-66313074 None:intergenic 20.0%
!!! GATTCTCTTATTATGATTTT+TGG - chr8_1:66313059-66313078 Msa1208280:five_prime_UTR 20.0%
!!! TTTCGGCAATTTATTTTAAA+AGG - chr8_1:66313112-66313131 Msa1208280:five_prime_UTR 20.0%
!!! CAGATTATTAGAATTTTAGA+CGG - chr8_1:66313243-66313262 Msa1208280:five_prime_UTR 20.0%
!! TATCATGATGGAACAATTAT+AGG + chr8_1:66311202-66311221 None:intergenic 25.0%
! AGGTATAAGAAGTGATTAAT+TGG - chr8_1:66311464-66311483 Msa1208280:intron 25.0%
! CTGTGAATGATTATGTATAT+TGG - chr8_1:66311607-66311626 Msa1208280:intron 25.0%
! ATTATGTATATTGGACTGTT+AGG - chr8_1:66311616-66311635 Msa1208280:intron 25.0%
! GTGAGTAATTATGGAATATT+TGG - chr8_1:66311779-66311798 Msa1208280:intron 25.0%
! AAGTTTAATTCCCTTCAAAT+CGG - chr8_1:66311807-66311826 Msa1208280:intron 25.0%
! TTTCGTTATGTTGTGAAATA+TGG - chr8_1:66312489-66312508 Msa1208280:CDS 25.0%
! TTGAAGTATACCTATTTGAT+TGG - chr8_1:66313178-66313197 Msa1208280:five_prime_UTR 25.0%
! GTATATACTTCCAATCAAAT+AGG + chr8_1:66313191-66313210 None:intergenic 25.0%
!! TATCATGATGGAACAATTAT+AGG + chr8_1:66311202-66311221 None:intergenic 25.0%
! AGGTATAAGAAGTGATTAAT+TGG - chr8_1:66311464-66311483 Msa1208280:intron 25.0%
! CTGTGAATGATTATGTATAT+TGG - chr8_1:66311607-66311626 Msa1208280:intron 25.0%
! ATTATGTATATTGGACTGTT+AGG - chr8_1:66311616-66311635 Msa1208280:intron 25.0%
! GTGAGTAATTATGGAATATT+TGG - chr8_1:66311779-66311798 Msa1208280:intron 25.0%
! AAGTTTAATTCCCTTCAAAT+CGG - chr8_1:66311807-66311826 Msa1208280:intron 25.0%
! TTTCGTTATGTTGTGAAATA+TGG - chr8_1:66312489-66312508 Msa1208280:CDS 25.0%
! TTGAAGTATACCTATTTGAT+TGG - chr8_1:66313178-66313197 Msa1208280:five_prime_UTR 25.0%
! GTATATACTTCCAATCAAAT+AGG + chr8_1:66313191-66313210 None:intergenic 25.0%
GAACAATTATAGGAAAGCTT+TGG + chr8_1:66311192-66311211 None:intergenic 30.0%
ATTCAAAAAATCCAAGAGGA+AGG + chr8_1:66311301-66311320 None:intergenic 30.0%
CAACATTCAAAAAATCCAAG+AGG + chr8_1:66311305-66311324 None:intergenic 30.0%
ATTCCGATTAGTAATGAACT+CGG - chr8_1:66311846-66311865 Msa1208280:intron 30.0%
TTTCCGAGTTCATTACTAAT+CGG + chr8_1:66311852-66311871 None:intergenic 30.0%
! TGGATTTAGACTAGTTAGAA+AGG - chr8_1:66311950-66311969 Msa1208280:intron 30.0%
!! AAGAGTTTTGATCGAAGTTT+TGG - chr8_1:66311998-66312017 Msa1208280:intron 30.0%
!!! ATCGAAGTTTTGGATGAATT+CGG - chr8_1:66312008-66312027 Msa1208280:intron 30.0%
AACAGCTTAACTGTAACTTA+TGG + chr8_1:66312046-66312065 None:intergenic 30.0%
TAAGTTACAGTTAAGCTGTT+TGG - chr8_1:66312046-66312065 Msa1208280:intron 30.0%
AAGTATCAACTATCCAATCT+TGG + chr8_1:66312142-66312161 None:intergenic 30.0%
ATGACGAGGAAGATATTAAA+AGG + chr8_1:66312351-66312370 None:intergenic 30.0%
GTCATCGTTATATAAGTTCA+TGG - chr8_1:66312366-66312385 Msa1208280:CDS 30.0%
CGTTATATAAGTTCATGGAT+TGG - chr8_1:66312371-66312390 Msa1208280:CDS 30.0%
!! ATAAGTTCATGGATTGGATT+TGG - chr8_1:66312377-66312396 Msa1208280:CDS 30.0%
!!! TTCGGATTTGGATTTTGATT+TGG - chr8_1:66312401-66312420 Msa1208280:CDS 30.0%
ACCTAGTAGTGATTTCAATT+AGG - chr8_1:66312578-66312597 Msa1208280:five_prime_UTR 30.0%
ACCTAATTGAAATCACTACT+AGG + chr8_1:66312582-66312601 None:intergenic 30.0%
TCTTCATGTCTTTACAATGT+TGG - chr8_1:66313147-66313166 Msa1208280:five_prime_UTR 30.0%
! TTGGAAGTATATACAATGTG+TGG - chr8_1:66313197-66313216 Msa1208280:five_prime_UTR 30.0%
GAACAATTATAGGAAAGCTT+TGG + chr8_1:66311192-66311211 None:intergenic 30.0%
ATTCAAAAAATCCAAGAGGA+AGG + chr8_1:66311301-66311320 None:intergenic 30.0%
CAACATTCAAAAAATCCAAG+AGG + chr8_1:66311305-66311324 None:intergenic 30.0%
ATTCCGATTAGTAATGAACT+CGG - chr8_1:66311846-66311865 Msa1208280:intron 30.0%
TTTCCGAGTTCATTACTAAT+CGG + chr8_1:66311852-66311871 None:intergenic 30.0%
! TGGATTTAGACTAGTTAGAA+AGG - chr8_1:66311950-66311969 Msa1208280:intron 30.0%
!! AAGAGTTTTGATCGAAGTTT+TGG - chr8_1:66311998-66312017 Msa1208280:intron 30.0%
!!! ATCGAAGTTTTGGATGAATT+CGG - chr8_1:66312008-66312027 Msa1208280:intron 30.0%
AACAGCTTAACTGTAACTTA+TGG + chr8_1:66312046-66312065 None:intergenic 30.0%
TAAGTTACAGTTAAGCTGTT+TGG - chr8_1:66312046-66312065 Msa1208280:intron 30.0%
AAGTATCAACTATCCAATCT+TGG + chr8_1:66312142-66312161 None:intergenic 30.0%
ATGACGAGGAAGATATTAAA+AGG + chr8_1:66312351-66312370 None:intergenic 30.0%
GTCATCGTTATATAAGTTCA+TGG - chr8_1:66312366-66312385 Msa1208280:CDS 30.0%
CGTTATATAAGTTCATGGAT+TGG - chr8_1:66312371-66312390 Msa1208280:CDS 30.0%
!! ATAAGTTCATGGATTGGATT+TGG - chr8_1:66312377-66312396 Msa1208280:CDS 30.0%
!!! TTCGGATTTGGATTTTGATT+TGG - chr8_1:66312401-66312420 Msa1208280:CDS 30.0%
ACCTAGTAGTGATTTCAATT+AGG - chr8_1:66312578-66312597 Msa1208280:five_prime_UTR 30.0%
ACCTAATTGAAATCACTACT+AGG + chr8_1:66312582-66312601 None:intergenic 30.0%
TCTTCATGTCTTTACAATGT+TGG - chr8_1:66313147-66313166 Msa1208280:five_prime_UTR 30.0%
! TTGGAAGTATATACAATGTG+TGG - chr8_1:66313197-66313216 Msa1208280:five_prime_UTR 30.0%
!! TTTTGAGAGAGATTGGACAA+GGG + chr8_1:66311154-66311173 None:intergenic 35.0%
!! ATTTTGAGAGAGATTGGACA+AGG + chr8_1:66311155-66311174 None:intergenic 35.0%
!! TGGTGAATTTTGAGAGAGAT+TGG + chr8_1:66311161-66311180 None:intergenic 35.0%
! ATTATAGGAAAGCTTTGGCA+AGG + chr8_1:66311187-66311206 None:intergenic 35.0%
TTATGTTGCTGAAATGGTTG+TGG - chr8_1:66311355-66311374 Msa1208280:intron 35.0%
!! TTGTGGTTAGCTTTGACTTT+AGG - chr8_1:66311372-66311391 Msa1208280:intron 35.0%
!! TGTGGTTAGCTTTGACTTTA+GGG - chr8_1:66311373-66311392 Msa1208280:intron 35.0%
AAGAAGGTAGAACTCAAGTT+AGG - chr8_1:66311410-66311429 Msa1208280:intron 35.0%
AGAAGGTAGAACTCAAGTTA+GGG - chr8_1:66311411-66311430 Msa1208280:intron 35.0%
CAACTTGGAATTGAAGATGT+AGG - chr8_1:66311441-66311460 Msa1208280:intron 35.0%
!! AAATTGTTGCTGTGCTGTTT+GGG - chr8_1:66311647-66311666 Msa1208280:intron 35.0%
! ATTATGATTGTTGTTCGGAC+AGG - chr8_1:66311716-66311735 Msa1208280:intron 35.0%
! TACCTTTTACTGTGATGATC+AGG - chr8_1:66311755-66311774 Msa1208280:intron 35.0%
TGATCAGGAGTGAGTAATTA+TGG - chr8_1:66311770-66311789 Msa1208280:intron 35.0%
TTGAAGTTGGATAATTCTGC+TGG - chr8_1:66311878-66311897 Msa1208280:intron 35.0%
TGGATAATTCTGCTGGAAAA+AGG - chr8_1:66311885-66311904 Msa1208280:intron 35.0%
TTGCGAAATGAGCTAAATTG+TGG - chr8_1:66311930-66311949 Msa1208280:intron 35.0%
!! TGTTTGGAGAAAAGTGCTTA+CGG - chr8_1:66312062-66312081 Msa1208280:intron 35.0%
AGTACATCATGAGCTGAATT+GGG - chr8_1:66312085-66312104 Msa1208280:intron 35.0%
! TGATACTTTGCTTGCTACTA+CGG - chr8_1:66312154-66312173 Msa1208280:intron 35.0%
GAACTTATATAACGATGACG+AGG + chr8_1:66312365-66312384 None:intergenic 35.0%
!! TCATGGATTGGATTTGGATT+CGG - chr8_1:66312383-66312402 Msa1208280:CDS 35.0%
ATTGGATTTGGATTCGGATT+TGG - chr8_1:66312389-66312408 Msa1208280:CDS 35.0%
! GTGGATTTTCATGCGTATAA+AGG - chr8_1:66313216-66313235 Msa1208280:five_prime_UTR 35.0%
AAATGAAAGAGTAAGCCACA+AGG + chr8_1:66313369-66313388 None:intergenic 35.0%
!! TTTTGAGAGAGATTGGACAA+GGG + chr8_1:66311154-66311173 None:intergenic 35.0%
!! ATTTTGAGAGAGATTGGACA+AGG + chr8_1:66311155-66311174 None:intergenic 35.0%
!! TGGTGAATTTTGAGAGAGAT+TGG + chr8_1:66311161-66311180 None:intergenic 35.0%
! ATTATAGGAAAGCTTTGGCA+AGG + chr8_1:66311187-66311206 None:intergenic 35.0%
TTATGTTGCTGAAATGGTTG+TGG - chr8_1:66311355-66311374 Msa1208280:intron 35.0%
!! TTGTGGTTAGCTTTGACTTT+AGG - chr8_1:66311372-66311391 Msa1208280:intron 35.0%
!! TGTGGTTAGCTTTGACTTTA+GGG - chr8_1:66311373-66311392 Msa1208280:intron 35.0%
AAGAAGGTAGAACTCAAGTT+AGG - chr8_1:66311410-66311429 Msa1208280:intron 35.0%
AGAAGGTAGAACTCAAGTTA+GGG - chr8_1:66311411-66311430 Msa1208280:intron 35.0%
CAACTTGGAATTGAAGATGT+AGG - chr8_1:66311441-66311460 Msa1208280:intron 35.0%
!! AAATTGTTGCTGTGCTGTTT+GGG - chr8_1:66311647-66311666 Msa1208280:intron 35.0%
! ATTATGATTGTTGTTCGGAC+AGG - chr8_1:66311716-66311735 Msa1208280:intron 35.0%
! TACCTTTTACTGTGATGATC+AGG - chr8_1:66311755-66311774 Msa1208280:intron 35.0%
TGATCAGGAGTGAGTAATTA+TGG - chr8_1:66311770-66311789 Msa1208280:intron 35.0%
TTGAAGTTGGATAATTCTGC+TGG - chr8_1:66311878-66311897 Msa1208280:intron 35.0%
TGGATAATTCTGCTGGAAAA+AGG - chr8_1:66311885-66311904 Msa1208280:intron 35.0%
TTGCGAAATGAGCTAAATTG+TGG - chr8_1:66311930-66311949 Msa1208280:intron 35.0%
!! TGTTTGGAGAAAAGTGCTTA+CGG - chr8_1:66312062-66312081 Msa1208280:intron 35.0%
AGTACATCATGAGCTGAATT+GGG - chr8_1:66312085-66312104 Msa1208280:intron 35.0%
! TGATACTTTGCTTGCTACTA+CGG - chr8_1:66312154-66312173 Msa1208280:intron 35.0%
GAACTTATATAACGATGACG+AGG + chr8_1:66312365-66312384 None:intergenic 35.0%
!! TCATGGATTGGATTTGGATT+CGG - chr8_1:66312383-66312402 Msa1208280:CDS 35.0%
ATTGGATTTGGATTCGGATT+TGG - chr8_1:66312389-66312408 Msa1208280:CDS 35.0%
! GTGGATTTTCATGCGTATAA+AGG - chr8_1:66313216-66313235 Msa1208280:five_prime_UTR 35.0%
AAATGAAAGAGTAAGCCACA+AGG + chr8_1:66313369-66313388 None:intergenic 35.0%
CGTGAGATAGAGAGAAAGAA+AGG + chr8_1:66311122-66311141 None:intergenic 40.0%
GCATGCTTATGTTGCTGAAA+TGG - chr8_1:66311349-66311368 Msa1208280:intron 40.0%
! GACTTTAGGGACTGTATTTG+AGG - chr8_1:66311386-66311405 Msa1208280:intron 40.0%
GGACTGTATTTGAGGAAAGA+AGG - chr8_1:66311394-66311413 Msa1208280:intron 40.0%
! AGTTAGGGTTTTGCACAACT+TGG - chr8_1:66311426-66311445 Msa1208280:intron 40.0%
CTTGGAATTGAAGATGTAGG+AGG - chr8_1:66311444-66311463 Msa1208280:intron 40.0%
! GAAATTGTTGCTGTGCTGTT+TGG - chr8_1:66311646-66311665 Msa1208280:intron 40.0%
CTAGAAGCCATAAGCTGTTT+GGG - chr8_1:66311678-66311697 Msa1208280:intron 40.0%
TAGAAGCCATAAGCTGTTTG+GGG - chr8_1:66311679-66311698 Msa1208280:intron 40.0%
!! TTCGGACAGGTTCTGTTTTT+GGG - chr8_1:66311729-66311748 Msa1208280:intron 40.0%
CTCCTGATCATCACAGTAAA+AGG + chr8_1:66311760-66311779 None:intergenic 40.0%
TTCTGCTGGAAAAAGGCTTA+CGG - chr8_1:66311892-66311911 Msa1208280:intron 40.0%
GAGTACATCATGAGCTGAAT+TGG - chr8_1:66312084-66312103 Msa1208280:intron 40.0%
ACTCGGAAAAATGCCAAGAT+TGG - chr8_1:66312126-66312145 Msa1208280:intron 40.0%
AAGCAGTTGGAGAGAAAATG+TGG - chr8_1:66312177-66312196 Msa1208280:intron 40.0%
GGTAGAATTACCCCATTAGA+TGG - chr8_1:66312599-66312618 Msa1208280:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr8_1:66312721-66312740 Msa1208280:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr8_1:66312721-66312740 Msa1208280:five_prime_UTR 40.0%
AACTAGAAGGGAAACACACA+TGG + chr8_1:66313319-66313338 None:intergenic 40.0%
ATGTGTGTTTCCCTTCTAGT+TGG - chr8_1:66313318-66313337 Msa1208280:five_prime_UTR 40.0%
! AAGTTCATCTGTGTCACTCT+TGG - chr8_1:66313443-66313462 Msa1208280:five_prime_UTR 40.0%
CGTGAGATAGAGAGAAAGAA+AGG + chr8_1:66311122-66311141 None:intergenic 40.0%
GCATGCTTATGTTGCTGAAA+TGG - chr8_1:66311349-66311368 Msa1208280:intron 40.0%
! GACTTTAGGGACTGTATTTG+AGG - chr8_1:66311386-66311405 Msa1208280:intron 40.0%
GGACTGTATTTGAGGAAAGA+AGG - chr8_1:66311394-66311413 Msa1208280:intron 40.0%
! AGTTAGGGTTTTGCACAACT+TGG - chr8_1:66311426-66311445 Msa1208280:intron 40.0%
CTTGGAATTGAAGATGTAGG+AGG - chr8_1:66311444-66311463 Msa1208280:intron 40.0%
! GAAATTGTTGCTGTGCTGTT+TGG - chr8_1:66311646-66311665 Msa1208280:intron 40.0%
CTAGAAGCCATAAGCTGTTT+GGG - chr8_1:66311678-66311697 Msa1208280:intron 40.0%
TAGAAGCCATAAGCTGTTTG+GGG - chr8_1:66311679-66311698 Msa1208280:intron 40.0%
!! TTCGGACAGGTTCTGTTTTT+GGG - chr8_1:66311729-66311748 Msa1208280:intron 40.0%
CTCCTGATCATCACAGTAAA+AGG + chr8_1:66311760-66311779 None:intergenic 40.0%
TTCTGCTGGAAAAAGGCTTA+CGG - chr8_1:66311892-66311911 Msa1208280:intron 40.0%
GAGTACATCATGAGCTGAAT+TGG - chr8_1:66312084-66312103 Msa1208280:intron 40.0%
ACTCGGAAAAATGCCAAGAT+TGG - chr8_1:66312126-66312145 Msa1208280:intron 40.0%
AAGCAGTTGGAGAGAAAATG+TGG - chr8_1:66312177-66312196 Msa1208280:intron 40.0%
GGTAGAATTACCCCATTAGA+TGG - chr8_1:66312599-66312618 Msa1208280:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr8_1:66312721-66312740 Msa1208280:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr8_1:66312721-66312740 Msa1208280:five_prime_UTR 40.0%
AACTAGAAGGGAAACACACA+TGG + chr8_1:66313319-66313338 None:intergenic 40.0%
ATGTGTGTTTCCCTTCTAGT+TGG - chr8_1:66313318-66313337 Msa1208280:five_prime_UTR 40.0%
! AAGTTCATCTGTGTCACTCT+TGG - chr8_1:66313443-66313462 Msa1208280:five_prime_UTR 40.0%
! GGAAAGCTTTGGCAAGGATT+TGG + chr8_1:66311181-66311200 None:intergenic 45.0%
CCAAGAGGAAGGAGTGAATT+CGG + chr8_1:66311290-66311309 None:intergenic 45.0%
GCTAGAAGCCATAAGCTGTT+TGG - chr8_1:66311677-66311696 Msa1208280:intron 45.0%
ATCTTGCCCCAAACAGCTTA+TGG + chr8_1:66311688-66311707 None:intergenic 45.0%
! GTTCGGACAGGTTCTGTTTT+TGG - chr8_1:66311728-66311747 Msa1208280:intron 45.0%
! TCGGAAAGTGCGTTTGAAGT+TGG - chr8_1:66311865-66311884 Msa1208280:intron 45.0%
TCTGCTGGAAAAAGGCTTAC+GGG - chr8_1:66311893-66311912 Msa1208280:intron 45.0%
GGTTATAATGACGACGACCT+AGG - chr8_1:66312552-66312571 Msa1208280:CDS 45.0%
AATCACTACTAGGTGCACCT+AGG + chr8_1:66312572-66312591 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr8_1:66312630-66312649 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr8_1:66312631-66312650 None:intergenic 45.0%
TAATGGTGGCCTATCCATAG+GGG + chr8_1:66312752-66312771 None:intergenic 45.0%
CTAATGGTGGCCTATCCATA+GGG + chr8_1:66312753-66312772 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr8_1:66312630-66312649 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr8_1:66312631-66312650 None:intergenic 45.0%
! TGTGTTTCCCTTCTAGTTGG+TGG - chr8_1:66313321-66313340 Msa1208280:five_prime_UTR 45.0%
ACAACCACCACCAACTAGAA+GGG + chr8_1:66313331-66313350 None:intergenic 45.0%
AACAACCACCACCAACTAGA+AGG + chr8_1:66313332-66313351 None:intergenic 45.0%
TGACTCTCACTAAGTCCTTG+TGG - chr8_1:66313351-66313370 Msa1208280:five_prime_UTR 45.0%
! TTCATCTGTGTCACTCTTGG+TGG - chr8_1:66313446-66313465 Msa1208280:five_prime_UTR 45.0%
! GGAAAGCTTTGGCAAGGATT+TGG + chr8_1:66311181-66311200 None:intergenic 45.0%
CCAAGAGGAAGGAGTGAATT+CGG + chr8_1:66311290-66311309 None:intergenic 45.0%
GCTAGAAGCCATAAGCTGTT+TGG - chr8_1:66311677-66311696 Msa1208280:intron 45.0%
ATCTTGCCCCAAACAGCTTA+TGG + chr8_1:66311688-66311707 None:intergenic 45.0%
! GTTCGGACAGGTTCTGTTTT+TGG - chr8_1:66311728-66311747 Msa1208280:intron 45.0%
! TCGGAAAGTGCGTTTGAAGT+TGG - chr8_1:66311865-66311884 Msa1208280:intron 45.0%
TCTGCTGGAAAAAGGCTTAC+GGG - chr8_1:66311893-66311912 Msa1208280:intron 45.0%
GGTTATAATGACGACGACCT+AGG - chr8_1:66312552-66312571 Msa1208280:CDS 45.0%
AATCACTACTAGGTGCACCT+AGG + chr8_1:66312572-66312591 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr8_1:66312630-66312649 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr8_1:66312631-66312650 None:intergenic 45.0%
TAATGGTGGCCTATCCATAG+GGG + chr8_1:66312752-66312771 None:intergenic 45.0%
CTAATGGTGGCCTATCCATA+GGG + chr8_1:66312753-66312772 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr8_1:66312630-66312649 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr8_1:66312631-66312650 None:intergenic 45.0%
! TGTGTTTCCCTTCTAGTTGG+TGG - chr8_1:66313321-66313340 Msa1208280:five_prime_UTR 45.0%
ACAACCACCACCAACTAGAA+GGG + chr8_1:66313331-66313350 None:intergenic 45.0%
AACAACCACCACCAACTAGA+AGG + chr8_1:66313332-66313351 None:intergenic 45.0%
TGACTCTCACTAAGTCCTTG+TGG - chr8_1:66313351-66313370 Msa1208280:five_prime_UTR 45.0%
! TTCATCTGTGTCACTCTTGG+TGG - chr8_1:66313446-66313465 Msa1208280:five_prime_UTR 45.0%
!! ATAATAATAATTAAAATAAG+CGG + chr8_1:66312240-66312259 None:intergenic 5.0%
!! ATAATAATAATTAAAATAAG+CGG + chr8_1:66312240-66312259 None:intergenic 5.0%
AGAGAGATTGGACAAGGGAG+GGG + chr8_1:66311149-66311168 None:intergenic 50.0%
GAGAGAGATTGGACAAGGGA+GGG + chr8_1:66311150-66311169 None:intergenic 50.0%
TGAGAGAGATTGGACAAGGG+AGG + chr8_1:66311151-66311170 None:intergenic 50.0%
TTTCCCTTCCTCTTCCTTGC+TGG - chr8_1:66311264-66311283 Msa1208280:intron 50.0%
CCGAATTCACTCCTTCCTCT+TGG - chr8_1:66311287-66311306 Msa1208280:intron 50.0%
!! TGTTGCTGTGCTGTTTGGGA+TGG - chr8_1:66311651-66311670 Msa1208280:intron 50.0%
CTTGCTACTACGGAAGCAGT+TGG - chr8_1:66312164-66312183 Msa1208280:intron 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr8_1:66312632-66312651 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr8_1:66312629-66312648 Msa1208280:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr8_1:66312632-66312651 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
AGGAGAGGGCTATCAATGAG+AGG - chr8_1:66312652-66312671 Msa1208280:five_prime_UTR 50.0%
CCTAATGGTGGCCTATCCAT+AGG + chr8_1:66312754-66312773 None:intergenic 50.0%
CCTATGGATAGGCCACCATT+AGG - chr8_1:66312751-66312770 Msa1208280:five_prime_UTR 50.0%
ATGGATAGGCCACCATTAGG+AGG - chr8_1:66312754-66312773 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr8_1:66312632-66312651 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr8_1:66312629-66312648 Msa1208280:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr8_1:66312632-66312651 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
!! GTTTCCCTTCTAGTTGGTGG+TGG - chr8_1:66313324-66313343 Msa1208280:five_prime_UTR 50.0%
AGAGAGATTGGACAAGGGAG+GGG + chr8_1:66311149-66311168 None:intergenic 50.0%
GAGAGAGATTGGACAAGGGA+GGG + chr8_1:66311150-66311169 None:intergenic 50.0%
TGAGAGAGATTGGACAAGGG+AGG + chr8_1:66311151-66311170 None:intergenic 50.0%
TTTCCCTTCCTCTTCCTTGC+TGG - chr8_1:66311264-66311283 Msa1208280:intron 50.0%
CCGAATTCACTCCTTCCTCT+TGG - chr8_1:66311287-66311306 Msa1208280:intron 50.0%
!! TGTTGCTGTGCTGTTTGGGA+TGG - chr8_1:66311651-66311670 Msa1208280:intron 50.0%
CTTGCTACTACGGAAGCAGT+TGG - chr8_1:66312164-66312183 Msa1208280:intron 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr8_1:66312632-66312651 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr8_1:66312629-66312648 Msa1208280:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr8_1:66312632-66312651 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
AGGAGAGGGCTATCAATGAG+AGG - chr8_1:66312652-66312671 Msa1208280:five_prime_UTR 50.0%
CCTAATGGTGGCCTATCCAT+AGG + chr8_1:66312754-66312773 None:intergenic 50.0%
CCTATGGATAGGCCACCATT+AGG - chr8_1:66312751-66312770 Msa1208280:five_prime_UTR 50.0%
ATGGATAGGCCACCATTAGG+AGG - chr8_1:66312754-66312773 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr8_1:66312632-66312651 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr8_1:66312629-66312648 Msa1208280:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr8_1:66312632-66312651 Msa1208280:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr8_1:66312647-66312666 None:intergenic 50.0%
!! GTTTCCCTTCTAGTTGGTGG+TGG - chr8_1:66313324-66313343 Msa1208280:five_prime_UTR 50.0%
GAATTCGGCCAGCAAGGAAG+AGG + chr8_1:66311275-66311294 None:intergenic 55.0%
AGGAGTGAATTCGGCCAGCA+AGG + chr8_1:66311281-66311300 None:intergenic 55.0%
CTCGAGCAGCGTGGATAACT+CGG - chr8_1:66312109-66312128 Msa1208280:intron 55.0%
TAGGGGCGGCTCCATCTAAT+GGG + chr8_1:66312613-66312632 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+TGG + chr8_1:66312614-66312633 None:intergenic 55.0%
ATTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312613-66312632 Msa1208280:five_prime_UTR 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312637-66312656 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr8_1:66312614-66312633 None:intergenic 55.0%
TAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312759-66312778 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr8_1:66312775-66312794 Msa1208280:five_prime_UTR 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr8_1:66312614-66312633 None:intergenic 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312637-66312656 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr8_1:66312775-66312794 Msa1208280:five_prime_UTR 55.0%
GAATTCGGCCAGCAAGGAAG+AGG + chr8_1:66311275-66311294 None:intergenic 55.0%
AGGAGTGAATTCGGCCAGCA+AGG + chr8_1:66311281-66311300 None:intergenic 55.0%
CTCGAGCAGCGTGGATAACT+CGG - chr8_1:66312109-66312128 Msa1208280:intron 55.0%
TAGGGGCGGCTCCATCTAAT+GGG + chr8_1:66312613-66312632 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+TGG + chr8_1:66312614-66312633 None:intergenic 55.0%
ATTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312613-66312632 Msa1208280:five_prime_UTR 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312637-66312656 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr8_1:66312614-66312633 None:intergenic 55.0%
TAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312759-66312778 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr8_1:66312775-66312794 Msa1208280:five_prime_UTR 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr8_1:66312614-66312633 None:intergenic 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr8_1:66312637-66312656 Msa1208280:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr8_1:66312638-66312657 Msa1208280:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr8_1:66312644-66312663 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr8_1:66312775-66312794 Msa1208280:five_prime_UTR 55.0%
CGGCCAGCAAGGAAGAGGAA+GGG + chr8_1:66311270-66311289 None:intergenic 60.0%
TCGGCCAGCAAGGAAGAGGA+AGG + chr8_1:66311271-66311290 None:intergenic 60.0%
GAATTGGGACTCGAGCAGCG+TGG - chr8_1:66312100-66312119 Msa1208280:intron 60.0%
AGGGGCGGCTCCATCTAATG+GGG + chr8_1:66312612-66312631 None:intergenic 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr8_1:66312618-66312637 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr8_1:66312627-66312646 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312735-66312754 Msa1208280:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAT+AGG - chr8_1:66312740-66312759 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTATCCATAGGGG+CGG + chr8_1:66312749-66312768 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312735-66312754 Msa1208280:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr8_1:66312618-66312637 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr8_1:66312627-66312646 None:intergenic 60.0%
CGGCCAGCAAGGAAGAGGAA+GGG + chr8_1:66311270-66311289 None:intergenic 60.0%
TCGGCCAGCAAGGAAGAGGA+AGG + chr8_1:66311271-66311290 None:intergenic 60.0%
GAATTGGGACTCGAGCAGCG+TGG - chr8_1:66312100-66312119 Msa1208280:intron 60.0%
AGGGGCGGCTCCATCTAATG+GGG + chr8_1:66312612-66312631 None:intergenic 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr8_1:66312618-66312637 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr8_1:66312627-66312646 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312735-66312754 Msa1208280:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAT+AGG - chr8_1:66312740-66312759 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTATCCATAGGGG+CGG + chr8_1:66312749-66312768 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr8_1:66312735-66312754 Msa1208280:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr8_1:66312618-66312637 Msa1208280:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr8_1:66312627-66312646 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66311094 66313471 66311094 ID=Msa1208280;Name=Msa1208280
chr8_1 mRNA 66311094 66313471 66311094 ID=Msa1208280-mRNA-1;Parent=Msa1208280;Name=Msa1208280-mRNA-1;_AED=0.25;_eAED=0.25;_QI=896|1|0.5|1|1|1|2|0|97
chr8_1 exon 66311094 66311161 66311094 ID=Msa1208280-mRNA-1:exon:21839;Parent=Msa1208280-mRNA-1
chr8_1 exon 66312350 66313471 66312350 ID=Msa1208280-mRNA-1:exon:21838;Parent=Msa1208280-mRNA-1
chr8_1 five_prime_UTR 66312576 66313471 66312576 ID=Msa1208280-mRNA-1:five_prime_utr;Parent=Msa1208280-mRNA-1
chr8_1 CDS 66312350 66312575 66312350 ID=Msa1208280-mRNA-1:cds;Parent=Msa1208280-mRNA-1
chr8_1 CDS 66311094 66311161 66311094 ID=Msa1208280-mRNA-1:cds;Parent=Msa1208280-mRNA-1
Gene Sequence

>Msa1208280

ATGATTATAAGAGTTTTGATCGAAGTTTTGGATGAATTCGGAACACGCAGAAGCCATAAGTTACAGTTAAGCTGTTTGGAGAAAAGTGCTTACGGAGTACATCATGAGCTGAATTGGGACTCGAGCAGCGTGGATAACTCGGAAAAATGCCAAGATTGGATAGTTGATACTTTGCTTGCTACTACGGAAGCAGTTGGAGAGAAAATGTGGTTGATTCGACATAGCTATTTTCAAGCAGCTAAGTATAAAGATGATAGTAGACTTGAAGTTCATCTGTGTCACTCTTGGTGGTAG
Protein sequence

>Msa1208280

MIIRVLIEVLDEFGTRRSHKLQLSCLEKSAYGVHHELNWDSSSVDNSEKCQDWIVDTLLATTEAVGEKMWLIRHSYFQAAKYKDDSRLEVHLCHSWW*