Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408270 | XP_003600057.1 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408270 | sp|Q9LJU7|PPA18_ARATH | 73.550 | 431 | 114 | 0 | 3 | 433 | 7 | 437 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408270 | G7IXK7 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 887 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408270 | Msa0453010 | 0.954164 | 5.473734e-112 | -8.615850e-47 |
| Msa0408270 | Msa1042160 | 0.814098 | 1.831450e-51 | -8.615850e-47 |
| Msa0408270 | Msa1042190 | 0.806087 | 9.751057e-50 | -8.615850e-47 |
| Msa0408270 | Msa1167470 | 0.804815 | 1.801911e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408270 | MtrunA17_Chr3g0098721 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 887 |
| Msa0408270 | MtrunA17_Chr5g0443881 | 80.332 | 422 | 81 | 1 | 14 | 433 | 18 | 439 | 0.0 | 731 |
| Msa0408270 | MtrunA17_Chr1g0178831 | 61.429 | 420 | 153 | 3 | 5 | 416 | 2 | 420 | 0.0 | 537 |
| Msa0408270 | MtrunA17_Chr7g0266131 | 59.112 | 428 | 172 | 3 | 3 | 428 | 15 | 441 | 0.0 | 535 |
| Msa0408270 | MtrunA17_Chr7g0266151 | 60.546 | 403 | 153 | 5 | 22 | 420 | 27 | 427 | 3.85e-176 | 499 |
| Msa0408270 | MtrunA17_Chr4g0064541 | 42.308 | 416 | 211 | 8 | 43 | 432 | 55 | 467 | 3.48e-102 | 312 |
| Msa0408270 | MtrunA17_Chr6g0453731 | 38.446 | 489 | 202 | 11 | 14 | 411 | 47 | 527 | 3.60e-99 | 308 |
| Msa0408270 | MtrunA17_Chr4g0019091 | 42.892 | 415 | 203 | 11 | 29 | 410 | 35 | 448 | 9.09e-99 | 303 |
| Msa0408270 | MtrunA17_Chr7g0236041 | 38.784 | 477 | 190 | 9 | 43 | 420 | 70 | 543 | 1.45e-96 | 300 |
| Msa0408270 | MtrunA17_Chr3g0121411 | 39.956 | 458 | 182 | 9 | 43 | 410 | 71 | 525 | 3.06e-96 | 299 |
| Msa0408270 | MtrunA17_Chr3g0121431 | 39.825 | 457 | 186 | 10 | 43 | 411 | 126 | 581 | 2.50e-94 | 295 |
| Msa0408270 | MtrunA17_Chr1g0211041 | 41.452 | 427 | 214 | 12 | 18 | 410 | 26 | 450 | 6.47e-94 | 290 |
| Msa0408270 | MtrunA17_Chr4g0019071 | 47.735 | 287 | 131 | 6 | 143 | 410 | 39 | 325 | 7.74e-81 | 253 |
| Msa0408270 | MtrunA17_Chr4g0022251 | 29.819 | 332 | 186 | 9 | 56 | 347 | 231 | 555 | 4.06e-35 | 137 |
| Msa0408270 | MtrunA17_Chr1g0173511 | 30.523 | 344 | 180 | 13 | 56 | 347 | 94 | 430 | 8.90e-34 | 132 |
| Msa0408270 | MtrunA17_Chr4g0043001 | 26.327 | 471 | 262 | 15 | 43 | 432 | 144 | 610 | 1.06e-26 | 112 |
| Msa0408270 | MtrunA17_Chr4g0043021 | 26.651 | 424 | 227 | 14 | 37 | 382 | 138 | 555 | 1.61e-24 | 106 |
| Msa0408270 | MtrunA17_Chr3g0116051 | 25.290 | 431 | 250 | 14 | 54 | 418 | 192 | 616 | 3.36e-24 | 105 |
| Msa0408270 | MtrunA17_Chr3g0116091 | 24.762 | 420 | 219 | 13 | 56 | 419 | 35 | 413 | 6.32e-23 | 100 |
| Msa0408270 | MtrunA17_Chr4g0057551 | 25.429 | 350 | 206 | 10 | 99 | 399 | 253 | 596 | 1.15e-22 | 100 |
| Msa0408270 | MtrunA17_Chr5g0419621 | 25.556 | 360 | 211 | 11 | 99 | 408 | 245 | 597 | 1.68e-22 | 100 |
| Msa0408270 | MtrunA17_Chr8g0364481 | 26.257 | 358 | 211 | 12 | 99 | 408 | 238 | 590 | 7.28e-22 | 98.2 |
| Msa0408270 | MtrunA17_Chr4g0019081 | 34.965 | 143 | 77 | 7 | 17 | 145 | 30 | 170 | 9.37e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408270 | AT3G20500.1 | 73.550 | 431 | 114 | 0 | 3 | 433 | 7 | 437 | 0.0 | 696 |
| Msa0408270 | AT3G52820.1 | 62.211 | 389 | 146 | 1 | 26 | 413 | 30 | 418 | 0.0 | 521 |
| Msa0408270 | AT3G52780.1 | 58.491 | 424 | 165 | 8 | 3 | 418 | 5 | 425 | 4.56e-176 | 499 |
| Msa0408270 | AT3G52810.1 | 58.911 | 404 | 163 | 3 | 21 | 422 | 30 | 432 | 5.63e-174 | 494 |
| Msa0408270 | AT3G52780.2 | 57.612 | 335 | 132 | 7 | 3 | 330 | 5 | 336 | 5.05e-133 | 387 |
| Msa0408270 | AT5G34850.1 | 42.602 | 392 | 198 | 7 | 43 | 408 | 54 | 444 | 2.33e-100 | 308 |
| Msa0408270 | AT4G36350.1 | 40.000 | 450 | 228 | 14 | 1 | 410 | 1 | 448 | 1.26e-98 | 303 |
| Msa0408270 | AT1G56360.1 | 40.179 | 448 | 225 | 13 | 4 | 410 | 3 | 448 | 6.17e-98 | 301 |
| Msa0408270 | AT3G07130.1 | 40.868 | 438 | 174 | 6 | 58 | 411 | 80 | 516 | 1.73e-96 | 300 |
| Msa0408270 | AT2G27190.1 | 38.972 | 467 | 239 | 14 | 1 | 427 | 7 | 467 | 1.22e-92 | 288 |
| Msa0408270 | AT3G07130.2 | 38.004 | 471 | 174 | 7 | 58 | 411 | 80 | 549 | 1.00e-89 | 283 |
| Msa0408270 | AT2G16430.2 | 39.683 | 441 | 231 | 12 | 3 | 410 | 14 | 452 | 8.17e-89 | 278 |
| Msa0408270 | AT2G18130.1 | 38.551 | 428 | 220 | 12 | 10 | 410 | 18 | 429 | 6.68e-88 | 275 |
| Msa0408270 | AT4G13700.1 | 42.328 | 378 | 163 | 7 | 40 | 364 | 62 | 437 | 1.20e-86 | 272 |
| Msa0408270 | AT2G16430.1 | 42.331 | 326 | 164 | 8 | 109 | 410 | 7 | 332 | 2.24e-75 | 239 |
| Msa0408270 | AT2G32770.3 | 34.335 | 466 | 208 | 10 | 43 | 410 | 69 | 534 | 1.89e-71 | 235 |
| Msa0408270 | AT4G13700.2 | 39.883 | 341 | 150 | 7 | 40 | 327 | 62 | 400 | 4.89e-68 | 222 |
| Msa0408270 | AT3G46120.1 | 33.787 | 441 | 189 | 15 | 3 | 410 | 6 | 376 | 1.00e-63 | 210 |
| Msa0408270 | AT2G32770.2 | 36.066 | 366 | 160 | 5 | 93 | 384 | 62 | 427 | 5.94e-63 | 209 |
| Msa0408270 | AT2G32770.1 | 30.472 | 466 | 197 | 11 | 43 | 410 | 69 | 505 | 1.91e-54 | 189 |
| Msa0408270 | AT1G52940.1 | 36.842 | 228 | 126 | 9 | 43 | 253 | 15 | 241 | 4.04e-34 | 128 |
| Msa0408270 | AT2G03450.1 | 26.549 | 452 | 247 | 16 | 43 | 417 | 143 | 586 | 1.94e-24 | 106 |
| Msa0408270 | AT1G13900.1 | 25.771 | 454 | 258 | 16 | 43 | 423 | 145 | 592 | 4.24e-24 | 105 |
| Msa0408270 | AT1G13750.1 | 26.361 | 349 | 204 | 10 | 99 | 399 | 239 | 582 | 8.09e-22 | 98.6 |
| Msa0408270 | AT5G50400.2 | 26.000 | 350 | 204 | 13 | 99 | 399 | 165 | 508 | 1.43e-21 | 97.4 |
| Msa0408270 | AT5G50400.1 | 26.000 | 350 | 204 | 13 | 99 | 399 | 237 | 580 | 2.18e-21 | 97.4 |
| Msa0408270 | AT4G24890.1 | 26.901 | 342 | 191 | 12 | 99 | 390 | 241 | 573 | 3.07e-21 | 96.7 |
Find 124 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCTCGGTGTGTCATTAT+TGG | 0.186386 | 3_2:-47860406 | None:intergenic |
| ATTCAGAAACCAACAATATT+AGG | 0.227486 | 3_2:-47863804 | None:intergenic |
| TATTATAGTACTTTGATATA+TGG | 0.235218 | 3_2:+47863732 | Msa0408270:three_prime_UTR |
| AGAGCATATACCTTTGTTAA+AGG | 0.238044 | 3_2:+47861659 | Msa0408270:CDS |
| CTCCATCGCCAATTGTTATA+TGG | 0.266178 | 3_2:-47863199 | None:intergenic |
| GCACCTTCGGTTGTAGAATA+TGG | 0.269575 | 3_2:+47861237 | Msa0408270:CDS |
| CCAACCACAGCAAAACTAAT+TGG | 0.273774 | 3_2:-47861444 | None:intergenic |
| TGAGGAAATAAAGAAGATTA+AGG | 0.280941 | 3_2:-47863622 | None:intergenic |
| TAAACTCAACGCATGCCTTC+TGG | 0.303036 | 3_2:+47863469 | Msa0408270:CDS |
| AAGATACACCATACGGTAAT+AGG | 0.308885 | 3_2:+47861336 | Msa0408270:CDS |
| ACGTGTATATAATGGAAAAT+TGG | 0.322130 | 3_2:+47863160 | Msa0408270:CDS |
| TGTACTCAGAACAATATAAA+TGG | 0.324001 | 3_2:+47861814 | Msa0408270:CDS |
| TTTGCTGTGGTTGGAGATCT+TGG | 0.334048 | 3_2:+47861453 | Msa0408270:CDS |
| TAGCTCACCATGACCGAAAC+TGG | 0.338203 | 3_2:-47863439 | None:intergenic |
| CTGTAAAATCTGATGATATA+TGG | 0.338306 | 3_2:+47863520 | Msa0408270:CDS |
| TGACAGAAACGTGTATATAA+TGG | 0.346137 | 3_2:+47863152 | Msa0408270:intron |
| CAATGATATAACAAAGAGTT+TGG | 0.348112 | 3_2:+47863646 | Msa0408270:three_prime_UTR |
| ATAGTATTTCCTAATATTGT+TGG | 0.365395 | 3_2:+47863795 | Msa0408270:three_prime_UTR |
| TTTGTGTAATTAATGGTAAA+TGG | 0.368665 | 3_2:+47863849 | Msa0408270:three_prime_UTR |
| GTGGTTGTTTGTGTAATTAA+TGG | 0.385340 | 3_2:+47863842 | Msa0408270:three_prime_UTR |
| ACCATCTTCTTATCCTCAAC+AGG | 0.385711 | 3_2:+47860601 | Msa0408270:CDS |
| TACGATGTTAACCTGATTCC+TGG | 0.388167 | 3_2:+47861525 | Msa0408270:CDS |
| CTTGATCCACTTTCCTCAAA+TGG | 0.396116 | 3_2:-47861717 | None:intergenic |
| GAAGGACAAGAATGTACTTC+AGG | 0.397072 | 3_2:-47860447 | None:intergenic |
| CGGTAAAAGTAAACAGAATT+CGG | 0.397092 | 3_2:-47861369 | None:intergenic |
| TAAACAGAATTCGGCTCTAA+AGG | 0.397659 | 3_2:-47861360 | None:intergenic |
| CAGGCTCGTCATCGTCATTC+CGG | 0.397663 | 3_2:-47863500 | None:intergenic |
| ACGAAAGGTCGCCAGGAATC+AGG | 0.398861 | 3_2:-47861536 | None:intergenic |
| TTTGAGTTTCATTGTTATGC+TGG | 0.403756 | 3_2:-47860477 | None:intergenic |
| GATATGATCTAGTGTTGATT+TGG | 0.419534 | 3_2:-47861490 | None:intergenic |
| TCGGCATACGAAAGGTCGCC+AGG | 0.422584 | 3_2:-47861543 | None:intergenic |
| TTGATTTGGTCCAACCAGTT+TGG | 0.423131 | 3_2:-47861476 | None:intergenic |
| TCCTATGTTTACTTTAAAGT+TGG | 0.424763 | 3_2:+47863759 | Msa0408270:three_prime_UTR |
| GAGTTCCGTGAAGCCAGTTT+CGG | 0.437074 | 3_2:+47863426 | Msa0408270:CDS |
| AGAATCCCATGGAAGATGTA+AGG | 0.437809 | 3_2:-47860576 | None:intergenic |
| TATAACAAAGAGTTTGGTTG+TGG | 0.442002 | 3_2:+47863652 | Msa0408270:three_prime_UTR |
| TGTCAAAAGTGGACAGGAAA+AGG | 0.442525 | 3_2:+47862897 | Msa0408270:CDS |
| CAGGTACACATTTCATTGGC+AGG | 0.442548 | 3_2:+47861171 | Msa0408270:intron |
| TTCCCTTGTGTTACCATCCA+TGG | 0.444697 | 3_2:-47861627 | None:intergenic |
| GTAGAAAATGTAACTGTAAG+AGG | 0.446204 | 3_2:-47861304 | None:intergenic |
| CATGACCGAAACTGGCTTCA+CGG | 0.449213 | 3_2:-47863431 | None:intergenic |
| CATATACCTTTGTTAAAGGA+TGG | 0.451005 | 3_2:+47861663 | Msa0408270:CDS |
| AAACAGAATTCGGCTCTAAA+GGG | 0.453881 | 3_2:-47861359 | None:intergenic |
| GGTGCTCACATTATCATGCT+TGG | 0.459315 | 3_2:+47861771 | Msa0408270:CDS |
| AACTCTGACCACTTCGGCTG+TGG | 0.461187 | 3_2:-47863408 | None:intergenic |
| ATCTGCATTCTTCCCTCCCT+CGG | 0.464254 | 3_2:-47860420 | None:intergenic |
| ATTCCAGGTACACATTTCAT+TGG | 0.465152 | 3_2:+47861167 | Msa0408270:intron |
| TGATGACAAATCTGCACCTT+CGG | 0.470584 | 3_2:+47861224 | Msa0408270:CDS |
| CAGCATCGTTGGGACACGTT+TGG | 0.476840 | 3_2:+47861573 | Msa0408270:CDS |
| GTAGAATATGGAACATTGCC+AGG | 0.484443 | 3_2:+47861249 | Msa0408270:CDS |
| GTTGGAGATCTTGGCCAAAC+TGG | 0.484735 | 3_2:+47861462 | Msa0408270:CDS |
| CGTGAAGCCAGTTTCGGTCA+TGG | 0.487528 | 3_2:+47863432 | Msa0408270:CDS |
| AGGTGAAGGTGGTGATATGA+TGG | 0.490466 | 3_2:+47862979 | Msa0408270:CDS |
| CGACTATATTCAGCATCGTT+GGG | 0.501801 | 3_2:+47861563 | Msa0408270:CDS |
| CAACGCATGCCTTCTGGAGT+TGG | 0.510276 | 3_2:+47863475 | Msa0408270:CDS |
| CCGACTATATTCAGCATCGT+TGG | 0.510775 | 3_2:+47861562 | Msa0408270:CDS |
| ATGCCTTCTGGAGTTGGCAC+CGG | 0.512720 | 3_2:+47863481 | Msa0408270:CDS |
| TGTTATGCTGGAAATAATGA+AGG | 0.516478 | 3_2:-47860465 | None:intergenic |
| ACCTGTTGAGGATAAGAAGA+TGG | 0.520924 | 3_2:-47860602 | None:intergenic |
| AGATTTGTCATCAGTGATCC+AGG | 0.525623 | 3_2:-47861214 | None:intergenic |
| GATTTATATCCTATAATTCG+AGG | 0.527909 | 3_2:+47861685 | Msa0408270:CDS |
| CATATAACAATTGGCGATGG+AGG | 0.529655 | 3_2:+47863200 | Msa0408270:CDS |
| GACAGGATCAGTAAAACTGT+TGG | 0.532369 | 3_2:-47860506 | None:intergenic |
| ACATCCTGAGTTAACTAAAG+AGG | 0.534798 | 3_2:-47863547 | None:intergenic |
| AGCATAAAGCAATGGCTCCA+TGG | 0.538411 | 3_2:-47863005 | None:intergenic |
| CGGATTTGTCAAAAGTGGAC+AGG | 0.539885 | 3_2:+47862891 | Msa0408270:CDS |
| ATAACCTCTTTAGTTAACTC+AGG | 0.542238 | 3_2:+47863543 | Msa0408270:CDS |
| AAACTAATTGGAAATTGAGC+TGG | 0.542505 | 3_2:-47861432 | None:intergenic |
| TTGTCATATTTCATGTGCCA+TGG | 0.543326 | 3_2:+47862933 | Msa0408270:CDS |
| GAGATCTTGGCCAAACTGGT+TGG | 0.544150 | 3_2:+47861466 | Msa0408270:CDS |
| GGCGATGGAGGGAACAAAGA+AGG | 0.546231 | 3_2:+47863212 | Msa0408270:CDS |
| GCTACATTGTCATACTTCCC+TGG | 0.548538 | 3_2:-47861267 | None:intergenic |
| AGAACAATATAAATGGCTAA+AGG | 0.548688 | 3_2:+47861821 | Msa0408270:CDS |
| GAATATAGTCGGCATACGAA+AGG | 0.549941 | 3_2:-47861551 | None:intergenic |
| GGTTAACATCGTATCTGCAT+TGG | 0.564067 | 3_2:-47861515 | None:intergenic |
| TCTTTGTTATATCATTGTTG+AGG | 0.564702 | 3_2:-47863640 | None:intergenic |
| ATAAATCCATCCTTTAACAA+AGG | 0.566465 | 3_2:-47861669 | None:intergenic |
| ACAGACGGATTTGTCAAAAG+TGG | 0.566501 | 3_2:+47862886 | Msa0408270:intron |
| CAGCGGTTGAAGTTACTGAC+AGG | 0.567172 | 3_2:-47860523 | None:intergenic |
| CAATAATGACACACCGAGGG+AGG | 0.572657 | 3_2:+47860407 | Msa0408270:five_prime_UTR |
| TGCTAGTTCTAGACCATGGA+TGG | 0.576530 | 3_2:+47861614 | Msa0408270:CDS |
| GGTGCTGTCCATATAACAAT+TGG | 0.577462 | 3_2:+47863191 | Msa0408270:CDS |
| CTAAAGGGCCTATTACCGTA+TGG | 0.583259 | 3_2:-47861344 | None:intergenic |
| GAGGTGGAAAATGCCATTTG+AGG | 0.583883 | 3_2:+47861704 | Msa0408270:CDS |
| GTCCATATAACAATTGGCGA+TGG | 0.584299 | 3_2:+47863197 | Msa0408270:CDS |
| AAAATGCCATTTGAGGAAAG+TGG | 0.586799 | 3_2:+47861711 | Msa0408270:CDS |
| AATAGTAACACAGCTCATCA+AGG | 0.589055 | 3_2:+47862959 | Msa0408270:CDS |
| CCAACGATGCTGAATATAGT+CGG | 0.594807 | 3_2:-47861562 | None:intergenic |
| CGGGACCTTGTCCACCGCAT+CGG | 0.603027 | 3_2:-47861389 | None:intergenic |
| GTGTGTGTGTGAACCTGTTG+AGG | 0.604655 | 3_2:-47860614 | None:intergenic |
| ATTCCGGTGCCAACTCCAGA+AGG | 0.606814 | 3_2:-47863484 | None:intergenic |
| GAAGATGGTTTAGAATCCCA+TGG | 0.606891 | 3_2:-47860587 | None:intergenic |
| ATATAGATCCACAGCCGAAG+TGG | 0.607631 | 3_2:+47863400 | Msa0408270:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.607943 | 3_2:+47862906 | Msa0408270:CDS |
| ACCAACTTTAAAGTAAACAT+AGG | 0.614102 | 3_2:-47863760 | None:intergenic |
| ATATAACAATTGGCGATGGA+GGG | 0.614723 | 3_2:+47863201 | Msa0408270:CDS |
| ATCGTTGGGACACGTTTGGT+AGG | 0.618657 | 3_2:+47861577 | Msa0408270:CDS |
| AACACAGCTCATCAAGGTGA+AGG | 0.620113 | 3_2:+47862965 | Msa0408270:CDS |
| AAGTATGACAATGTAGCTGA+AGG | 0.620469 | 3_2:+47861273 | Msa0408270:CDS |
| AATAATGACACACCGAGGGA+GGG | 0.622778 | 3_2:+47860408 | Msa0408270:five_prime_UTR |
| TGAAATATGACAAGCAACCA+AGG | 0.623138 | 3_2:-47862923 | None:intergenic |
| ACAAGCATATGAGAGTTACC+TGG | 0.624277 | 3_2:+47861196 | Msa0408270:CDS |
| ACGCTAGCAGCATAAAGCAA+TGG | 0.624653 | 3_2:-47863013 | None:intergenic |
| TGTCCACGCATATGAACGCT+CGG | 0.625969 | 3_2:+47863057 | Msa0408270:CDS |
| CTAATTGGAAATTGAGCTGG+TGG | 0.628378 | 3_2:-47861429 | None:intergenic |
| CTCAGGAAAGATACACCATA+CGG | 0.635954 | 3_2:+47861329 | Msa0408270:CDS |
| ACAGCTCATCAAGGTGAAGG+TGG | 0.636860 | 3_2:+47862968 | Msa0408270:CDS |
| TAGAATATGGAACATTGCCA+GGG | 0.638513 | 3_2:+47861250 | Msa0408270:CDS |
| TCACGGAACTCTGACCACTT+CGG | 0.641421 | 3_2:-47863414 | None:intergenic |
| GTTCCATATTCTACAACCGA+AGG | 0.641626 | 3_2:-47861240 | None:intergenic |
| TTATATCCTATAATTCGAGG+TGG | 0.646759 | 3_2:+47861688 | Msa0408270:CDS |
| CACCAATAATGACACACCGA+GGG | 0.664521 | 3_2:+47860404 | None:intergenic |
| TGGTGATATGATGGAAACCA+TGG | 0.664924 | 3_2:+47862988 | Msa0408270:CDS |
| CACTTGCTAGTTCTAGACCA+TGG | 0.671317 | 3_2:+47861610 | Msa0408270:CDS |
| CTACCGAGCGTTCATATGCG+TGG | 0.675509 | 3_2:-47863060 | None:intergenic |
| CATGGTCTAGAACTAGCAAG+TGG | 0.681335 | 3_2:-47861609 | None:intergenic |
| GAATAGAAAAGACAAAAGAG+TGG | 0.682632 | 3_2:+47863823 | Msa0408270:three_prime_UTR |
| AGACCATGGATGGTAACACA+AGG | 0.685999 | 3_2:+47861624 | Msa0408270:CDS |
| AGGTCTGACATAGTTATCAG+CGG | 0.699869 | 3_2:-47860540 | None:intergenic |
| GTTATATGGACAGCACCACA+AGG | 0.701668 | 3_2:-47863185 | None:intergenic |
| AATGGAAAATTGGATCCTTG+TGG | 0.706470 | 3_2:+47863170 | Msa0408270:CDS |
| ACACCAATAATGACACACCG+AGG | 0.708458 | 3_2:+47860403 | None:intergenic |
| GACCATGGATGGTAACACAA+GGG | 0.712669 | 3_2:+47861625 | Msa0408270:CDS |
| GCTGTGTTACTATTATACCA+TGG | 0.712732 | 3_2:-47862950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTCATATTATTAT+CGG | - | chr3_2:47862064-47862083 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAAATTTACTTAC+TGG | + | chr3_2:47863096-47863115 | Msa0408270:intron | 15.0% |
| !! | TATTATAGTACTTTGATATA+TGG | + | chr3_2:47863732-47863751 | Msa0408270:three_prime_UTR | 15.0% |
| !! | CAGTTTAAAAATACAAAATA+TGG | - | chr3_2:47863878-47863897 | None:intergenic | 15.0% |
| !!! | CATATTTTGTATTTTTAAAC+TGG | + | chr3_2:47863876-47863895 | Msa0408270:three_prime_UTR | 15.0% |
| !! | GATTAAGTAATAAAGCAAAA+GGG | - | chr3_2:47860697-47860716 | None:intergenic | 20.0% |
| !! | TGATTAAGTAATAAAGCAAA+AGG | - | chr3_2:47860698-47860717 | None:intergenic | 20.0% |
| !! | ATAAAGTAACATCCTTATAA+AGG | - | chr3_2:47861107-47861126 | None:intergenic | 20.0% |
| !! | AAATATTATGTGTCAACAAT+TGG | - | chr3_2:47862252-47862271 | None:intergenic | 20.0% |
| !! | TTCTATTCATATCTTTATGA+AGG | - | chr3_2:47862724-47862743 | None:intergenic | 20.0% |
| !! | ATAAAGATATGAATAGAATC+AGG | + | chr3_2:47862726-47862745 | Msa0408270:intron | 20.0% |
| !! | TTCTCAATAACTACATATAA+GGG | - | chr3_2:47862803-47862822 | None:intergenic | 20.0% |
| !! | TTTCTCAATAACTACATATA+AGG | - | chr3_2:47862804-47862823 | None:intergenic | 20.0% |
| !! | TGAAAACTTCAAAAAACATT+TGG | - | chr3_2:47863265-47863284 | None:intergenic | 20.0% |
| !! | ATAGTATTTCCTAATATTGT+TGG | + | chr3_2:47863795-47863814 | Msa0408270:three_prime_UTR | 20.0% |
| !! | TTTGTGTAATTAATGGTAAA+TGG | + | chr3_2:47863849-47863868 | Msa0408270:three_prime_UTR | 20.0% |
| !!! | GGAATTTATATTTTCAAGTA+AGG | + | chr3_2:47863897-47863916 | Msa0408270:three_prime_UTR | 20.0% |
| ! | AAATGAGATGATGAAATGAA+GGG | - | chr3_2:47860645-47860664 | None:intergenic | 25.0% |
| ! | AAAATGAGATGATGAAATGA+AGG | - | chr3_2:47860646-47860665 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTCATGTGTTTT+TGG | + | chr3_2:47860753-47860772 | Msa0408270:intron | 25.0% |
| !!! | CATGTCAAAAAGTTATTTCT+AGG | + | chr3_2:47860855-47860874 | Msa0408270:intron | 25.0% |
| !! | TTTTCATAAGCTCATTGAAT+TGG | - | chr3_2:47860952-47860971 | None:intergenic | 25.0% |
| ! | ATAAATCCATCCTTTAACAA+AGG | - | chr3_2:47861672-47861691 | None:intergenic | 25.0% |
| ! | GATTTATATCCTATAATTCG+AGG | + | chr3_2:47861685-47861704 | Msa0408270:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+TGG | + | chr3_2:47861750-47861769 | Msa0408270:CDS | 25.0% |
| ! | TGTACTCAGAACAATATAAA+TGG | + | chr3_2:47861814-47861833 | Msa0408270:CDS | 25.0% |
| ! | AGAACAATATAAATGGCTAA+AGG | + | chr3_2:47861821-47861840 | Msa0408270:CDS | 25.0% |
| ! | TTTCCAATTAAAGTATGTCT+TGG | + | chr3_2:47861922-47861941 | Msa0408270:intron | 25.0% |
| ! | TTCATAGTTTATAACCAGTT+CGG | - | chr3_2:47861988-47862007 | None:intergenic | 25.0% |
| ! | TATTTATAACCTATGAAGCA+CGG | - | chr3_2:47862153-47862172 | None:intergenic | 25.0% |
| ! | GTTATAAATAACTGTGAATG+TGG | + | chr3_2:47862163-47862182 | Msa0408270:intron | 25.0% |
| !!! | TTTTTTCACTTCTTGTTGTA+AGG | - | chr3_2:47862194-47862213 | None:intergenic | 25.0% |
| !!! | GTCTGTTTCTATTAAACTTT+AGG | + | chr3_2:47862374-47862393 | Msa0408270:intron | 25.0% |
| ! | AAGCAAAATATTGTTTAGCA+GGG | - | chr3_2:47862448-47862467 | None:intergenic | 25.0% |
| ! | AAAGCAAAATATTGTTTAGC+AGG | - | chr3_2:47862449-47862468 | None:intergenic | 25.0% |
| !! | ATATTTTGCTTTAGCAGTTT+TGG | + | chr3_2:47862457-47862476 | Msa0408270:intron | 25.0% |
| ! | TCTAAATGTTTGTCATTCAT+TGG | - | chr3_2:47862571-47862590 | None:intergenic | 25.0% |
| ! | TGACAAACATTTAGAAGTTA+CGG | + | chr3_2:47862576-47862595 | Msa0408270:intron | 25.0% |
| ! | AATTCAGATATTAGAGACTT+AGG | + | chr3_2:47862755-47862774 | Msa0408270:intron | 25.0% |
| !!! | AAAAACTCTGAAGTTATAGT+AGG | + | chr3_2:47862835-47862854 | Msa0408270:intron | 25.0% |
| !! | ACGTGTATATAATGGAAAAT+TGG | + | chr3_2:47863160-47863179 | Msa0408270:CDS | 25.0% |
| !! | CATATATCATCAGATTTTAC+AGG | - | chr3_2:47863522-47863541 | None:intergenic | 25.0% |
| ! | CTGTAAAATCTGATGATATA+TGG | + | chr3_2:47863520-47863539 | Msa0408270:CDS | 25.0% |
| !! | AAGAAGATTAAGGAGTTTTA+GGG | - | chr3_2:47863615-47863634 | None:intergenic | 25.0% |
| !! | AAAGAAGATTAAGGAGTTTT+AGG | - | chr3_2:47863616-47863635 | None:intergenic | 25.0% |
| ! | TGAGGAAATAAAGAAGATTA+AGG | - | chr3_2:47863625-47863644 | None:intergenic | 25.0% |
| !! | TCTTTGTTATATCATTGTTG+AGG | - | chr3_2:47863643-47863662 | None:intergenic | 25.0% |
| ! | CAATGATATAACAAAGAGTT+TGG | + | chr3_2:47863646-47863665 | Msa0408270:three_prime_UTR | 25.0% |
| !!! | TCCTATGTTTACTTTAAAGT+TGG | + | chr3_2:47863759-47863778 | Msa0408270:three_prime_UTR | 25.0% |
| !!! | ACCAACTTTAAAGTAAACAT+AGG | - | chr3_2:47863763-47863782 | None:intergenic | 25.0% |
| ! | ATTCAGAAACCAACAATATT+AGG | - | chr3_2:47863807-47863826 | None:intergenic | 25.0% |
| TGTTATGCTGGAAATAATGA+AGG | - | chr3_2:47860468-47860487 | None:intergenic | 30.0% | |
| ! | TTTGAGTTTCATTGTTATGC+TGG | - | chr3_2:47860480-47860499 | None:intergenic | 30.0% |
| AAAAACCTTACATCTTCCAT+GGG | + | chr3_2:47860571-47860590 | Msa0408270:CDS | 30.0% | |
| AAAATTTAGTGAAGCTGCTA+AGG | + | chr3_2:47860881-47860900 | Msa0408270:intron | 30.0% | |
| !! | AAAACAGCTTATAGCTTGTT+TGG | + | chr3_2:47860968-47860987 | Msa0408270:intron | 30.0% |
| TGAAGCTGTTTATTCAAACA+AGG | + | chr3_2:47861079-47861098 | Msa0408270:intron | 30.0% | |
| TCAAACAAGGAACCTTTATA+AGG | + | chr3_2:47861092-47861111 | Msa0408270:intron | 30.0% | |
| GTAGAAAATGTAACTGTAAG+AGG | - | chr3_2:47861307-47861326 | None:intergenic | 30.0% | |
| CGGTAAAAGTAAACAGAATT+CGG | - | chr3_2:47861372-47861391 | None:intergenic | 30.0% | |
| AAACTAATTGGAAATTGAGC+TGG | - | chr3_2:47861435-47861454 | None:intergenic | 30.0% | |
| !!! | ATTTCCAATTAGTTTTGCTG+TGG | + | chr3_2:47861440-47861459 | Msa0408270:CDS | 30.0% |
| !! | GATATGATCTAGTGTTGATT+TGG | - | chr3_2:47861493-47861512 | None:intergenic | 30.0% |
| AGAGCATATACCTTTGTTAA+AGG | + | chr3_2:47861659-47861678 | Msa0408270:CDS | 30.0% | |
| CATATACCTTTGTTAAAGGA+TGG | + | chr3_2:47861663-47861682 | Msa0408270:CDS | 30.0% | |
| TTATATCCTATAATTCGAGG+TGG | + | chr3_2:47861688-47861707 | Msa0408270:CDS | 30.0% | |
| ATAAATGGCTAAAGGTTAGT+TGG | + | chr3_2:47861829-47861848 | Msa0408270:intron | 30.0% | |
| TAGCCAAGACATACTTTAAT+TGG | - | chr3_2:47861928-47861947 | None:intergenic | 30.0% | |
| TGGTTATAAACTATGAAGCA+CGG | + | chr3_2:47861991-47862010 | Msa0408270:intron | 30.0% | |
| TCTCATATTATTATCGGTGT+CGG | - | chr3_2:47862058-47862077 | None:intergenic | 30.0% | |
| TTCAGTGTAATCATTTGTGT+CGG | + | chr3_2:47862089-47862108 | Msa0408270:intron | 30.0% | |
| TATTATGTGTCAACAATTGG+AGG | - | chr3_2:47862249-47862268 | None:intergenic | 30.0% | |
| ACTAGAAACAGTGACATTTA+TGG | - | chr3_2:47862286-47862305 | None:intergenic | 30.0% | |
| TTGGATATGAAATATTGCCA+AGG | + | chr3_2:47862476-47862495 | Msa0408270:intron | 30.0% | |
| TTGCTATGTTGTTAATTCCT+TGG | - | chr3_2:47862496-47862515 | None:intergenic | 30.0% | |
| ATGCATTCATATGAAAACCT+AGG | + | chr3_2:47862520-47862539 | Msa0408270:intron | 30.0% | |
| ! | ATTGGTTTCAATGCAAGTAA+GGG | - | chr3_2:47862553-47862572 | None:intergenic | 30.0% |
| !!! | GGCTTCTATTTTTATGTATG+TGG | - | chr3_2:47862703-47862722 | None:intergenic | 30.0% |
| TCAATAACTACATATAAGGG+AGG | - | chr3_2:47862800-47862819 | None:intergenic | 30.0% | |
| TGACAGAAACGTGTATATAA+TGG | + | chr3_2:47863152-47863171 | Msa0408270:intron | 30.0% | |
| ! | TAGTATCGGAGAAAACTTAA+AGG | - | chr3_2:47863295-47863314 | None:intergenic | 30.0% |
| ATCTTAAACGACACGTAAAA+AGG | - | chr3_2:47863326-47863345 | None:intergenic | 30.0% | |
| ATAACCTCTTTAGTTAACTC+AGG | + | chr3_2:47863543-47863562 | Msa0408270:CDS | 30.0% | |
| TATAACAAAGAGTTTGGTTG+TGG | + | chr3_2:47863652-47863671 | Msa0408270:three_prime_UTR | 30.0% | |
| GAATAGAAAAGACAAAAGAG+TGG | + | chr3_2:47863823-47863842 | Msa0408270:three_prime_UTR | 30.0% | |
| GTGGTTGTTTGTGTAATTAA+TGG | + | chr3_2:47863842-47863861 | Msa0408270:three_prime_UTR | 30.0% | |
| ! | GGAAGATGTAAGGTTTTTCT+AGG | - | chr3_2:47860569-47860588 | None:intergenic | 35.0% |
| GAAAAACCTTACATCTTCCA+TGG | + | chr3_2:47860570-47860589 | Msa0408270:CDS | 35.0% | |
| !!! | TTTGTCATGTGTTTTTGGCT+TGG | + | chr3_2:47860758-47860777 | Msa0408270:intron | 35.0% |
| !! | GCTAAGGTTGATTTGAGAAA+TGG | + | chr3_2:47860897-47860916 | Msa0408270:intron | 35.0% |
| CATTGAATTGGATCTTCATC+TGG | - | chr3_2:47860940-47860959 | None:intergenic | 35.0% | |
| ! | ACATGAAAAGTGTGTATTCC+AGG | + | chr3_2:47861152-47861171 | Msa0408270:intron | 35.0% |
| ATTCCAGGTACACATTTCAT+TGG | + | chr3_2:47861167-47861186 | Msa0408270:intron | 35.0% | |
| TAGAATATGGAACATTGCCA+GGG | + | chr3_2:47861250-47861269 | Msa0408270:CDS | 35.0% | |
| AAGTATGACAATGTAGCTGA+AGG | + | chr3_2:47861273-47861292 | Msa0408270:CDS | 35.0% | |
| ! | AGTTACATTTTCTACAGCTC+AGG | + | chr3_2:47861312-47861331 | Msa0408270:CDS | 35.0% |
| AAGATACACCATACGGTAAT+AGG | + | chr3_2:47861336-47861355 | Msa0408270:CDS | 35.0% | |
| !! | AAACAGAATTCGGCTCTAAA+GGG | - | chr3_2:47861362-47861381 | None:intergenic | 35.0% |
| ! | TAAACAGAATTCGGCTCTAA+AGG | - | chr3_2:47861363-47861382 | None:intergenic | 35.0% |
| !! | TCTGTTTACTTTTACCGATG+CGG | + | chr3_2:47861375-47861394 | Msa0408270:CDS | 35.0% |
| ! | CATTTTCCACCTCGAATTAT+AGG | - | chr3_2:47861697-47861716 | None:intergenic | 35.0% |
| ! | AAAATGCCATTTGAGGAAAG+TGG | + | chr3_2:47861711-47861730 | Msa0408270:CDS | 35.0% |
| GTCATTACATTCCAGACAAA+TGG | + | chr3_2:47861870-47861889 | Msa0408270:intron | 35.0% | |
| TACATTCCAGACAAATGGAA+TGG | + | chr3_2:47861875-47861894 | Msa0408270:intron | 35.0% | |
| ACATTCCAGACAAATGGAAT+GGG | + | chr3_2:47861876-47861895 | Msa0408270:intron | 35.0% | |
| TTACATGATATTCACCGAAC+TGG | + | chr3_2:47861971-47861990 | Msa0408270:intron | 35.0% | |
| CAAAATATTGTTTAGCAGGG+TGG | - | chr3_2:47862445-47862464 | None:intergenic | 35.0% | |
| !! | CATTGGTTTCAATGCAAGTA+AGG | - | chr3_2:47862554-47862573 | None:intergenic | 35.0% |
| ! | GAAGAAGCAACAGTTATTTC+TGG | - | chr3_2:47862604-47862623 | None:intergenic | 35.0% |
| TTGCACTTCATCATTACCAA+GGG | - | chr3_2:47862630-47862649 | None:intergenic | 35.0% | |
| TTTGCACTTCATCATTACCA+AGG | - | chr3_2:47862631-47862650 | None:intergenic | 35.0% | |
| ATGATGAAGTGCAAAATCCT+TGG | + | chr3_2:47862636-47862655 | Msa0408270:intron | 35.0% | |
| TGAAATATGACAAGCAACCA+AGG | - | chr3_2:47862926-47862945 | None:intergenic | 35.0% | |
| TTGTCATATTTCATGTGCCA+TGG | + | chr3_2:47862933-47862952 | Msa0408270:CDS | 35.0% | |
| ! | GCTGTGTTACTATTATACCA+TGG | - | chr3_2:47862953-47862972 | None:intergenic | 35.0% |
| AATAGTAACACAGCTCATCA+AGG | + | chr3_2:47862959-47862978 | Msa0408270:CDS | 35.0% | |
| !!! | AGCGTTGATTTAGTTTTTGC+TGG | + | chr3_2:47863031-47863050 | Msa0408270:CDS | 35.0% |
| AATGGAAAATTGGATCCTTG+TGG | + | chr3_2:47863170-47863189 | Msa0408270:CDS | 35.0% | |
| ATATAACAATTGGCGATGGA+GGG | + | chr3_2:47863201-47863220 | Msa0408270:CDS | 35.0% | |
| ATCGGAGAAAACTTAAAGGT+TGG | - | chr3_2:47863291-47863310 | None:intergenic | 35.0% | |
| AAAAGGAACAGAGGTAGTAT+CGG | - | chr3_2:47863309-47863328 | None:intergenic | 35.0% | |
| ACATCCTGAGTTAACTAAAG+AGG | - | chr3_2:47863550-47863569 | None:intergenic | 35.0% | |
| GAAGGACAAGAATGTACTTC+AGG | - | chr3_2:47860450-47860469 | None:intergenic | 40.0% | |
| GACAGGATCAGTAAAACTGT+TGG | - | chr3_2:47860509-47860528 | None:intergenic | 40.0% | |
| AGGTCTGACATAGTTATCAG+CGG | - | chr3_2:47860543-47860562 | None:intergenic | 40.0% | |
| ! | TGTAAGGTTTTTCTAGGCTG+AGG | - | chr3_2:47860563-47860582 | None:intergenic | 40.0% |
| AGAATCCCATGGAAGATGTA+AGG | - | chr3_2:47860579-47860598 | None:intergenic | 40.0% | |
| ! | GAAGATGGTTTAGAATCCCA+TGG | - | chr3_2:47860590-47860609 | None:intergenic | 40.0% |
| ACCATCTTCTTATCCTCAAC+AGG | + | chr3_2:47860601-47860620 | Msa0408270:CDS | 40.0% | |
| ACCTGTTGAGGATAAGAAGA+TGG | - | chr3_2:47860605-47860624 | None:intergenic | 40.0% | |
| ACAAGCATATGAGAGTTACC+TGG | + | chr3_2:47861196-47861215 | Msa0408270:CDS | 40.0% | |
| AGATTTGTCATCAGTGATCC+AGG | - | chr3_2:47861217-47861236 | None:intergenic | 40.0% | |
| TGATGACAAATCTGCACCTT+CGG | + | chr3_2:47861224-47861243 | Msa0408270:CDS | 40.0% | |
| GTTCCATATTCTACAACCGA+AGG | - | chr3_2:47861243-47861262 | None:intergenic | 40.0% | |
| GTAGAATATGGAACATTGCC+AGG | + | chr3_2:47861249-47861268 | Msa0408270:CDS | 40.0% | |
| CTCAGGAAAGATACACCATA+CGG | + | chr3_2:47861329-47861348 | Msa0408270:CDS | 40.0% | |
| !! | TGGTGTTTTGAGCTGTAACT+CGG | - | chr3_2:47861412-47861431 | None:intergenic | 40.0% |
| CTAATTGGAAATTGAGCTGG+TGG | - | chr3_2:47861432-47861451 | None:intergenic | 40.0% | |
| CCAACCACAGCAAAACTAAT+TGG | - | chr3_2:47861447-47861466 | None:intergenic | 40.0% | |
| !!! | CCAATTAGTTTTGCTGTGGT+TGG | + | chr3_2:47861444-47861463 | Msa0408270:CDS | 40.0% |
| !! | TTGATTTGGTCCAACCAGTT+TGG | - | chr3_2:47861479-47861498 | None:intergenic | 40.0% |
| GGTTAACATCGTATCTGCAT+TGG | - | chr3_2:47861518-47861537 | None:intergenic | 40.0% | |
| TACGATGTTAACCTGATTCC+TGG | + | chr3_2:47861525-47861544 | Msa0408270:CDS | 40.0% | |
| GAATATAGTCGGCATACGAA+AGG | - | chr3_2:47861554-47861573 | None:intergenic | 40.0% | |
| CCAACGATGCTGAATATAGT+CGG | - | chr3_2:47861565-47861584 | None:intergenic | 40.0% | |
| CGACTATATTCAGCATCGTT+GGG | + | chr3_2:47861563-47861582 | Msa0408270:CDS | 40.0% | |
| CTTGATCCACTTTCCTCAAA+TGG | - | chr3_2:47861720-47861739 | None:intergenic | 40.0% | |
| TAGATCCCATTCCATTTGTC+TGG | - | chr3_2:47861884-47861903 | None:intergenic | 40.0% | |
| !! | ATTGGAGGCATCTAGAAAAC+AGG | - | chr3_2:47862234-47862253 | None:intergenic | 40.0% |
| ACGAAACATCACAAGGTTCA+TGG | - | chr3_2:47862339-47862358 | None:intergenic | 40.0% | |
| CTGTAACACGAAACATCACA+AGG | - | chr3_2:47862346-47862365 | None:intergenic | 40.0% | |
| CTTGTGATGTTTCGTGTTAC+AGG | + | chr3_2:47862344-47862363 | Msa0408270:intron | 40.0% | |
| AATGCATGCATCTGTTACCA+AGG | - | chr3_2:47862656-47862675 | None:intergenic | 40.0% | |
| GCATGCATTGCATTTGCATA+TGG | + | chr3_2:47862667-47862686 | Msa0408270:intron | 40.0% | |
| CATTGCATTTGCATATGGCT+AGG | + | chr3_2:47862672-47862691 | Msa0408270:intron | 40.0% | |
| CATCTTCTGTGATCTACAGA+CGG | + | chr3_2:47862871-47862890 | Msa0408270:intron | 40.0% | |
| ! | ACAGACGGATTTGTCAAAAG+TGG | + | chr3_2:47862886-47862905 | Msa0408270:intron | 40.0% |
| TGTCAAAAGTGGACAGGAAA+AGG | + | chr3_2:47862897-47862916 | Msa0408270:CDS | 40.0% | |
| ! | TGGTGATATGATGGAAACCA+TGG | + | chr3_2:47862988-47863007 | Msa0408270:CDS | 40.0% |
| ! | GGTGCTGTCCATATAACAAT+TGG | + | chr3_2:47863191-47863210 | Msa0408270:CDS | 40.0% |
| GTCCATATAACAATTGGCGA+TGG | + | chr3_2:47863197-47863216 | Msa0408270:CDS | 40.0% | |
| CTCCATCGCCAATTGTTATA+TGG | - | chr3_2:47863202-47863221 | None:intergenic | 40.0% | |
| CATATAACAATTGGCGATGG+AGG | + | chr3_2:47863200-47863219 | Msa0408270:CDS | 40.0% | |
| CCATGACGCAACAATACAAA+CGG | - | chr3_2:47863367-47863386 | None:intergenic | 40.0% | |
| ATTGTTGCGTCATGGATGTT+TGG | + | chr3_2:47863372-47863391 | Msa0408270:intron | 40.0% | |
| AATAATGACACACCGAGGGA+GGG | + | chr3_2:47860408-47860427 | Msa0408270:five_prime_UTR | 45.0% | |
| CTGCCAATGAAATGTGTACC+TGG | - | chr3_2:47861173-47861192 | None:intergenic | 45.0% | |
| CAGGTACACATTTCATTGGC+AGG | + | chr3_2:47861171-47861190 | Msa0408270:intron | 45.0% | |
| GCACCTTCGGTTGTAGAATA+TGG | + | chr3_2:47861237-47861256 | Msa0408270:CDS | 45.0% | |
| GCTACATTGTCATACTTCCC+TGG | - | chr3_2:47861270-47861289 | None:intergenic | 45.0% | |
| CTAAAGGGCCTATTACCGTA+TGG | - | chr3_2:47861347-47861366 | None:intergenic | 45.0% | |
| !! | GTTTACTTTTACCGATGCGG+TGG | + | chr3_2:47861378-47861397 | Msa0408270:CDS | 45.0% |
| !! | GGTGTTTTGAGCTGTAACTC+GGG | - | chr3_2:47861411-47861430 | None:intergenic | 45.0% |
| ! | TTTGCTGTGGTTGGAGATCT+TGG | + | chr3_2:47861453-47861472 | Msa0408270:CDS | 45.0% |
| CCGACTATATTCAGCATCGT+TGG | + | chr3_2:47861562-47861581 | Msa0408270:CDS | 45.0% | |
| ! | CATGGTCTAGAACTAGCAAG+TGG | - | chr3_2:47861612-47861631 | None:intergenic | 45.0% |
| !! | CACTTGCTAGTTCTAGACCA+TGG | + | chr3_2:47861610-47861629 | Msa0408270:CDS | 45.0% |
| !! | TGCTAGTTCTAGACCATGGA+TGG | + | chr3_2:47861614-47861633 | Msa0408270:CDS | 45.0% |
| AGACCATGGATGGTAACACA+AGG | + | chr3_2:47861624-47861643 | Msa0408270:CDS | 45.0% | |
| GACCATGGATGGTAACACAA+GGG | + | chr3_2:47861625-47861644 | Msa0408270:CDS | 45.0% | |
| TTCCCTTGTGTTACCATCCA+TGG | - | chr3_2:47861630-47861649 | None:intergenic | 45.0% | |
| ! | GAGGTGGAAAATGCCATTTG+AGG | + | chr3_2:47861704-47861723 | Msa0408270:CDS | 45.0% |
| GGTGCTCACATTATCATGCT+TGG | + | chr3_2:47861771-47861790 | Msa0408270:CDS | 45.0% | |
| ATGAAGCACGGACACAAACA+TGG | + | chr3_2:47862003-47862022 | Msa0408270:intron | 45.0% | |
| AATGTCAGACACCATTGCGT+GGG | + | chr3_2:47862121-47862140 | Msa0408270:intron | 45.0% | |
| ! | CTGTTGCTTCTTCTTTCCCT+TGG | + | chr3_2:47862611-47862630 | Msa0408270:intron | 45.0% |
| CGGATTTGTCAAAAGTGGAC+AGG | + | chr3_2:47862891-47862910 | Msa0408270:CDS | 45.0% | |
| AACACAGCTCATCAAGGTGA+AGG | + | chr3_2:47862965-47862984 | Msa0408270:CDS | 45.0% | |
| AGGTGAAGGTGGTGATATGA+TGG | + | chr3_2:47862979-47862998 | Msa0408270:CDS | 45.0% | |
| AGCATAAAGCAATGGCTCCA+TGG | - | chr3_2:47863008-47863027 | None:intergenic | 45.0% | |
| ACGCTAGCAGCATAAAGCAA+TGG | - | chr3_2:47863016-47863035 | None:intergenic | 45.0% | |
| GTTATATGGACAGCACCACA+AGG | - | chr3_2:47863188-47863207 | None:intergenic | 45.0% | |
| CGACACGTAAAAAGGAACAG+AGG | - | chr3_2:47863318-47863337 | None:intergenic | 45.0% | |
| CCGTTTGTATTGTTGCGTCA+TGG | + | chr3_2:47863364-47863383 | Msa0408270:intron | 45.0% | |
| ATATAGATCCACAGCCGAAG+TGG | + | chr3_2:47863400-47863419 | Msa0408270:CDS | 45.0% | |
| TAAACTCAACGCATGCCTTC+TGG | + | chr3_2:47863469-47863488 | Msa0408270:CDS | 45.0% | |
| CAATAATGACACACCGAGGG+AGG | + | chr3_2:47860407-47860426 | Msa0408270:five_prime_UTR | 50.0% | |
| ATCTGCATTCTTCCCTCCCT+CGG | - | chr3_2:47860423-47860442 | None:intergenic | 50.0% | |
| CAGCGGTTGAAGTTACTGAC+AGG | - | chr3_2:47860526-47860545 | None:intergenic | 50.0% | |
| GTGTGTGTGTGAACCTGTTG+AGG | - | chr3_2:47860617-47860636 | None:intergenic | 50.0% | |
| ! | TTTTACCGATGCGGTGGACA+AGG | + | chr3_2:47861384-47861403 | Msa0408270:CDS | 50.0% |
| GTTGGAGATCTTGGCCAAAC+TGG | + | chr3_2:47861462-47861481 | Msa0408270:CDS | 50.0% | |
| GAGATCTTGGCCAAACTGGT+TGG | + | chr3_2:47861466-47861485 | Msa0408270:CDS | 50.0% | |
| ATCGTTGGGACACGTTTGGT+AGG | + | chr3_2:47861577-47861596 | Msa0408270:CDS | 50.0% | |
| !! | TATTATCGGTGTCGGCGTGT+CGG | - | chr3_2:47862050-47862069 | None:intergenic | 50.0% |
| CAATGTCAGACACCATTGCG+TGG | + | chr3_2:47862120-47862139 | Msa0408270:intron | 50.0% | |
| ATGTCAGACACCATTGCGTG+GGG | + | chr3_2:47862122-47862141 | Msa0408270:intron | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | + | chr3_2:47862906-47862925 | Msa0408270:CDS | 50.0% | |
| ACAGCTCATCAAGGTGAAGG+TGG | + | chr3_2:47862968-47862987 | Msa0408270:CDS | 50.0% | |
| TGTCCACGCATATGAACGCT+CGG | + | chr3_2:47863057-47863076 | Msa0408270:CDS | 50.0% | |
| TTGCGTCATGGATGTTTGGC+AGG | + | chr3_2:47863376-47863395 | Msa0408270:intron | 50.0% | |
| TCACGGAACTCTGACCACTT+CGG | - | chr3_2:47863417-47863436 | None:intergenic | 50.0% | |
| GAGTTCCGTGAAGCCAGTTT+CGG | + | chr3_2:47863426-47863445 | Msa0408270:CDS | 50.0% | |
| ! | CATGACCGAAACTGGCTTCA+CGG | - | chr3_2:47863434-47863453 | None:intergenic | 50.0% |
| TAGCTCACCATGACCGAAAC+TGG | - | chr3_2:47863442-47863461 | None:intergenic | 50.0% | |
| ACGAAAGGTCGCCAGGAATC+AGG | - | chr3_2:47861539-47861558 | None:intergenic | 55.0% | |
| CAGCATCGTTGGGACACGTT+TGG | + | chr3_2:47861573-47861592 | Msa0408270:CDS | 55.0% | |
| GGGGAATGTCCGTGCTTCAT+AGG | + | chr3_2:47862141-47862160 | Msa0408270:intron | 55.0% | |
| !! | CAAGTAAGGGCGCTAGTCCT+AGG | - | chr3_2:47862540-47862559 | None:intergenic | 55.0% |
| CTACCGAGCGTTCATATGCG+TGG | - | chr3_2:47863063-47863082 | None:intergenic | 55.0% | |
| CACGCATATGAACGCTCGGT+AGG | + | chr3_2:47863061-47863080 | Msa0408270:intron | 55.0% | |
| GGCGATGGAGGGAACAAAGA+AGG | + | chr3_2:47863212-47863231 | Msa0408270:CDS | 55.0% | |
| AACTCTGACCACTTCGGCTG+TGG | - | chr3_2:47863411-47863430 | None:intergenic | 55.0% | |
| CGTGAAGCCAGTTTCGGTCA+TGG | + | chr3_2:47863432-47863451 | Msa0408270:CDS | 55.0% | |
| !! | CAACGCATGCCTTCTGGAGT+TGG | + | chr3_2:47863475-47863494 | Msa0408270:CDS | 55.0% |
| !! | ATGCCTTCTGGAGTTGGCAC+CGG | + | chr3_2:47863481-47863500 | Msa0408270:CDS | 55.0% |
| ! | ATTCCGGTGCCAACTCCAGA+AGG | - | chr3_2:47863487-47863506 | None:intergenic | 55.0% |
| CAGGCTCGTCATCGTCATTC+CGG | - | chr3_2:47863503-47863522 | None:intergenic | 55.0% | |
| TCGGCATACGAAAGGTCGCC+AGG | - | chr3_2:47861546-47861565 | None:intergenic | 60.0% | |
| CACGGACATTCCCCACGCAA+TGG | - | chr3_2:47862135-47862154 | None:intergenic | 60.0% | |
| CGGGACCTTGTCCACCGCAT+CGG | - | chr3_2:47861392-47861411 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47860407 | 47863922 | 47860407 | ID=Msa0408270;Name=Msa0408270 |
| chr3_2 | mRNA | 47860407 | 47863922 | 47860407 | ID=Msa0408270-mRNA-1;Parent=Msa0408270;Name=Msa0408270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=81|1|1|1|1|1|5|305|433 |
| chr3_2 | exon | 47860407 | 47860622 | 47860407 | ID=Msa0408270-mRNA-1:exon:9180;Parent=Msa0408270-mRNA-1 |
| chr3_2 | exon | 47861174 | 47861842 | 47861174 | ID=Msa0408270-mRNA-1:exon:9181;Parent=Msa0408270-mRNA-1 |
| chr3_2 | exon | 47862890 | 47863078 | 47862890 | ID=Msa0408270-mRNA-1:exon:9182;Parent=Msa0408270-mRNA-1 |
| chr3_2 | exon | 47863158 | 47863246 | 47863158 | ID=Msa0408270-mRNA-1:exon:9183;Parent=Msa0408270-mRNA-1 |
| chr3_2 | exon | 47863398 | 47863922 | 47863398 | ID=Msa0408270-mRNA-1:exon:9184;Parent=Msa0408270-mRNA-1 |
| chr3_2 | five_prime_UTR | 47860407 | 47860487 | 47860407 | ID=Msa0408270-mRNA-1:five_prime_utr;Parent=Msa0408270-mRNA-1 |
| chr3_2 | CDS | 47860488 | 47860622 | 47860488 | ID=Msa0408270-mRNA-1:cds;Parent=Msa0408270-mRNA-1 |
| chr3_2 | CDS | 47861174 | 47861842 | 47861174 | ID=Msa0408270-mRNA-1:cds;Parent=Msa0408270-mRNA-1 |
| chr3_2 | CDS | 47862890 | 47863078 | 47862890 | ID=Msa0408270-mRNA-1:cds;Parent=Msa0408270-mRNA-1 |
| chr3_2 | CDS | 47863158 | 47863246 | 47863158 | ID=Msa0408270-mRNA-1:cds;Parent=Msa0408270-mRNA-1 |
| chr3_2 | CDS | 47863398 | 47863617 | 47863398 | ID=Msa0408270-mRNA-1:cds;Parent=Msa0408270-mRNA-1 |
| chr3_2 | three_prime_UTR | 47863618 | 47863922 | 47863618 | ID=Msa0408270-mRNA-1:three_prime_utr;Parent=Msa0408270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
