AlfalfaGEDB | Msa1042160

M. sativa cultivar zhongmu-4 / Msa1042160

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0042546 GO:0044085 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042160	XP_013450075.1	96.081	689	25	1	1	687	1	689	0.0	1355

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042160	sp\|Q9SJQ1\|PXC1_ARATH	63.393	672	210	11	26	683	22	671	0.0	830

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042160	A0A072U4N7	96.081	689	25	1	1	687	1	689	0.0	1355

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1042160	0.820175	7.880645e-53	-8.615850e-47
Msa0000560	Msa1042160	0.833493	5.167207e-56	-8.615850e-47
Msa0002580	Msa1042160	0.817500	3.193001e-52	-8.615850e-47
Msa0003080	Msa1042160	0.889175	3.064183e-73	-8.615850e-47
Msa0005890	Msa1042160	0.873879	1.043943e-67	-8.615850e-47
Msa0008040	Msa1042160	0.855386	6.532490e-62	-8.615850e-47
Msa0014770	Msa1042160	0.840850	6.782941e-58	-8.615850e-47
Msa0015150	Msa1042160	0.837778	4.251709e-57	-8.615850e-47
Msa0016040	Msa1042160	0.819411	1.178233e-52	-8.615850e-47
Msa0017670	Msa1042160	0.832576	8.739123e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042160	MtrunA17_Chr7g0265601	96.081	689	25	1	1	687	1	689	0.0	1355
Msa1042160	MtrunA17_Chr1g0179521	69.617	678	174	8	13	687	10	658	0.0	884
Msa1042160	MtrunA17_Chr1g0209521	44.088	685	324	17	20	687	22	664	8.60e-166	491
Msa1042160	MtrunA17_Chr5g0423121	43.036	639	311	14	20	657	21	607	1.54e-158	471
Msa1042160	MtrunA17_Chr3g0128551	40.938	640	315	19	27	658	31	615	6.09e-143	431
Msa1042160	MtrunA17_Chr4g0062911	42.476	638	309	17	28	657	30	617	1.28e-140	426
Msa1042160	MtrunA17_Chr5g0432851	40.862	673	332	20	8	673	30	643	1.62e-140	426
Msa1042160	MtrunA17_Chr3g0108301	41.038	636	311	18	49	673	60	642	1.81e-140	426
Msa1042160	MtrunA17_Chr8g0387791	40.194	617	302	16	48	658	41	596	5.96e-138	419
Msa1042160	MtrunA17_Chr8g0393211	40.712	646	322	18	45	670	52	656	6.81e-138	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042160	AT2G36570.1	63.393	672	210	11	26	683	22	671	0.0	830
Msa1042160	AT1G68400.1	44.394	660	320	16	28	674	31	656	1.36e-160	478
Msa1042160	AT2G26730.1	42.342	666	322	19	20	670	17	635	2.76e-149	449
Msa1042160	AT5G58300.3	42.236	644	296	19	48	674	66	650	1.15e-145	439
Msa1042160	AT5G58300.1	42.236	644	296	19	48	674	66	650	1.15e-145	439
Msa1042160	AT5G58300.2	42.236	644	296	19	48	674	66	650	1.15e-145	439
Msa1042160	AT4G23740.1	40.469	640	311	20	28	657	29	608	2.41e-139	422
Msa1042160	AT4G23740.2	40.469	640	311	20	28	657	29	608	2.41e-139	422
Msa1042160	AT3G08680.1	41.186	641	318	20	26	658	26	615	5.72e-139	422
Msa1042160	AT3G08680.2	41.186	641	318	20	26	658	26	615	5.72e-139	422

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Find 216 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTCCGGCAATGA+CGG	0.538246	7_1:-79915381	Msa1042160:CDS
AAACGGAAAATGTTGAGCCC+TGG	0.490248	7_1:-79915216	Msa1042160:CDS
AACAAAGAAGCTTTCACAAG+AGG	0.590870	7_1:-79913778	Msa1042160:CDS
AACAAGAATAAGCTTGGTGT+TGG	0.483147	7_1:-79913997	Msa1042160:CDS
AACACGACACTGCCAAATAT+TGG	0.337770	7_1:+79913151	None:intergenic
AACAGTATATGGATGTTGTG+GGG	0.689136	7_1:-79914771	Msa1042160:CDS
AACGGAAAATGTTGAGCCCT+GGG	0.456433	7_1:-79915215	Msa1042160:CDS
AACGGGACCTCGGAGATTGA+GGG	0.608263	7_1:+79915788	None:intergenic
AACTTGAGCTAATCTAATGT+TGG	0.519798	7_1:+79916315	None:intergenic
AAGAAGCTGATCTTCCGAAA+TGG	0.415167	7_1:-79913644	Msa1042160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATATTTATTATACGTGTGC+TGG	+	chr7_1:79913050-79913069	None:intergenic	30.0%
TAATCTAATGTTGGTGTAGT+GGG	+	chr7_1:79913106-79913125	None:intergenic	30.0%
AACTTGAGCTAATCTAATGT+TGG	+	chr7_1:79913115-79913134	None:intergenic	30.0%
CTTTGTCGGTGAAAAAAATA+TGG	-	chr7_1:79913176-79913195	Msa1042160:three_prime_UTR	30.0%
TATGTTTGAGAATTTGAGTG+AGG	+	chr7_1:79913314-79913333	None:intergenic	30.0%
CTGAAACTCCTTCAAAAAAA+CGG	-	chr7_1:79914194-79914213	Msa1042160:intron	30.0%
AGAAAAAGTGAAAGTAGTAG+TGG	-	chr7_1:79914364-79914383	Msa1042160:intron	30.0%
GAAGTGAGAAAAAAGGTTAT+AGG	-	chr7_1:79914386-79914405	Msa1042160:intron	30.0%
AGTGAGAAAAAAGGTTATAG+GGG	-	chr7_1:79914388-79914407	Msa1042160:intron	30.0%
TAGTTTGGGAACTGTTTATA+GGG	-	chr7_1:79914558-79914577	Msa1042160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	79913005	79916444	79913005	ID=Msa1042160;Name=Msa1042160
chr7_1	mRNA	79913005	79916444	79913005	ID=Msa1042160-mRNA-1;Parent=Msa1042160;Name=Msa1042160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=405\|1\|1\|1\|1\|1\|2\|369\|687
chr7_1	exon	79913005	79914056	79913005	ID=Msa1042160-mRNA-1:exon:21686;Parent=Msa1042160-mRNA-1
chr7_1	exon	79914659	79916444	79914659	ID=Msa1042160-mRNA-1:exon:21685;Parent=Msa1042160-mRNA-1
chr7_1	five_prime_UTR	79916040	79916444	79916040	ID=Msa1042160-mRNA-1:five_prime_utr;Parent=Msa1042160-mRNA-1
chr7_1	CDS	79914659	79916039	79914659	ID=Msa1042160-mRNA-1:cds;Parent=Msa1042160-mRNA-1
chr7_1	CDS	79913374	79914056	79913374	ID=Msa1042160-mRNA-1:cds;Parent=Msa1042160-mRNA-1
chr7_1	three_prime_UTR	79913005	79913373	79913005	ID=Msa1042160-mRNA-1:three_prime_utr;Parent=Msa1042160-mRNA-1

Gene Sequence

>Msa1042160

ATGAACACAACACTAGCATTAGCCTTAACCTTAGCATTTCTCTGCACATCACCATCTCTAACACAAAGTACACAACAAAATGACACACACGCCCTCACTGAATTCCGTCTCCAAACCGACTTCCACGGCTACCTCGTCGATAACTGGACGGGCGAGGAAGCCTGCAACGCGGCCTGGCGCGGTGTTGAATGCTCTCCAAACGGCAGAGTGATAGCTCTCTCACTCCCTTCCCTCAATCTCCGAGGTCCCGTTGATTCTCTCTCAACGCTAACCTACTTACGCTTCCTTGACCTACACGATAACCGCTTAAACGGAACCCTTGTTCCTCTCTTAAACTGCACTGATCTTGAACTTCTCTATCTCTCCGGCAACGACTTTTCCGGCGAGATACCGCGGGAGATATCCTCGTTACGGCTTCTCGTCAGACTCGACATTTCCGACAACAACATCCACGGCGAAATTCCCAAAGAATTATCAAAACTGAAGCATCTACTCACTCTCCGGTTACAGAACAATGAACTCTCCGGCGAAGTTCCCGATCTTTCTTCTTCCCTTATCAATCTCAGAGAACTGAACATCACCAACAATGAACTCCAAGGACACTTACCAGATGCCATGTTTACCAAATTCGGTAACAAAAGCTTCTCCGGCAATGACGGTCTTTGCGGATCAGCGCCTTTGCCGAAGTGTTCTGTCACCGAAAAAACTCCTCATCCTCCTTCTGATGATGATAGTTCTGAAATTGTTCCTTCAAACCCTAGCAAAAGTCATGGTAATATTCAATCTGAAACTCCTTCAAAAAAACGGAAAATGTTGAGCCCTGGGGGAATAGTAGCAGTTGCGGTGGCGGTTTCTGTGGCGTTACTGGTGGTGGTTTCTTTCACGGTAGCACAATGTTGCGGAAGAGGAGGAAGATCTAATTCAACGGTGGGGATGGATAGTGAAATTGGGAAGAGAAAAAGTGAAAGTAGTAGTGGAAGTGAGAAAAAAGGTTATAGGGGTGGTAATAGTAATAATGGGGGTGTGGATAGAGATAGTGATGGAACAACAACTGAAACAGAGAGAAGCAAATTAGTGTTTTTTGATAGAAGGAATGAGTTTGAGTTAGAGGATTTGCTACGAGCTTCGGCAGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCTGTTCTTGATGATGGATGTACTGTTGCTGTTAAGAGACTTAAGGATGCTAATCCTTGTGATAGGAATCAGTTTGAACAGTATATGGATGTTGTGGGGAAGCTTAGACATCCTAATGTTGTTAGACTTAAAGCTTATTATTATGCTAAGGAAGAAAAGCTTTTGGTTTATGATTATCTATCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGCCCAGGAAGGATTCCGTTAGATTGGACAACAAGAATAAGCTTGGTGTTGGGGGCAGCAAGAGGCCTAGCAAGGATTCATGGAGAGTATAGTGCAGCCAAGATACCTCATGGAAATGTGAAATCATCAAATGTGATACTTGACAAGAATGGGGTTGCTTGCATAGGTGACTTTGGTTTGTCACTATTATTAAACCCTGCTCACGCGGTTGCAAGGCTGGGTGGGTACAGAGCTCCAGAACAGGCGGAAACAAAGAAGCTTTCACAAGAGGCAGATGTGTATGCTTTTGGAGTGTTGGTGTTGGAAGTTTTGACAGGAAGAGCTCCTTCCTCTCAGTATTCTTCTCCCGTAGGAGTTCGCCCTTGCGTGGAATTTGAGGAACAAGAAGCTGATCTTCCGAAATGGGTTCGATCTGTTGTGAAGGATGAGTGGACATCAGAGGTGTTTGATCAAGAACTTTTGAGGTACAAGAACATTGAGGAGGAGCTTGTTTCAATGCTGAATGTTGGACTAGCTTGTGTTGTGTTACAACCTGAAAAGAGGCCAACAATGTTGGAAGTTGTTAAGATGATTGAGGATATTAGGGTGGAACAATCTCCTCTAAGAGAGGATTATGATGAATCTCGCAATTCACTTTCACCTTCACTTGCCACAACTGAAGATTGCTTAGCTTAA

Protein sequence

>Msa1042160

MNTTLALALTLAFLCTSPSLTQSTQQNDTHALTEFRLQTDFHGYLVDNWTGEEACNAAWRGVECSPNGRVIALSLPSLNLRGPVDSLSTLTYLRFLDLHDNRLNGTLVPLLNCTDLELLYLSGNDFSGEIPREISSLRLLVRLDISDNNIHGEIPKELSKLKHLLTLRLQNNELSGEVPDLSSSLINLRELNITNNELQGHLPDAMFTKFGNKSFSGNDGLCGSAPLPKCSVTEKTPHPPSDDDSSEIVPSNPSKSHGNIQSETPSKKRKMLSPGGIVAVAVAVSVALLVVVSFTVAQCCGRGGRSNSTVGMDSEIGKRKSESSSGSEKKGYRGGNSNNGGVDRDSDGTTTETERSKLVFFDRRNEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCDRNQFEQYMDVVGKLRHPNVVRLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSAAKIPHGNVKSSNVILDKNGVACIGDFGLSLLLNPAHAVARLGGYRAPEQAETKKLSQEADVYAFGVLVLEVLTGRAPSSQYSSPVGVRPCVEFEEQEADLPKWVRSVVKDEWTSEVFDQELLRYKNIEEELVSMLNVGLACVVLQPEKRPTMLEVVKMIEDIRVEQSPLREDYDESRNSLSPSLATTEDCLA*