Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453010 | XP_003600057.1 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453010 | sp|Q9LJU7|PPA18_ARATH | 73.550 | 431 | 114 | 0 | 3 | 433 | 7 | 437 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453010 | G7IXK7 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408270 | Msa0453010 | 0.954164 | 5.473734e-112 | -8.615850e-47 |
| Msa0453010 | Msa0541300 | 0.800430 | 1.446892e-48 | -8.615850e-47 |
| Msa0453010 | Msa0541310 | 0.800221 | 1.595406e-48 | -8.615850e-47 |
| Msa0453010 | Msa1042160 | 0.817838 | 2.679807e-52 | -8.615850e-47 |
| Msa0453010 | Msa1042190 | 0.813124 | 3.000710e-51 | -8.615850e-47 |
| Msa0453010 | Msa1080000 | 0.804651 | 1.950543e-49 | -8.615850e-47 |
| Msa0453010 | Msa1081690 | 0.800072 | 1.710643e-48 | -8.615850e-47 |
| Msa0453010 | Msa1166190 | 0.815999 | 6.931893e-52 | -8.615850e-47 |
| Msa0453010 | Msa1167470 | 0.809694 | 1.667153e-50 | -8.615850e-47 |
| Msa0453010 | Msa1410160 | 0.813301 | 2.743186e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453010 | MtrunA17_Chr3g0098721 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 888 |
| Msa0453010 | MtrunA17_Chr5g0443881 | 80.332 | 422 | 81 | 1 | 14 | 433 | 18 | 439 | 0.0 | 732 |
| Msa0453010 | MtrunA17_Chr1g0178831 | 61.190 | 420 | 154 | 3 | 5 | 416 | 2 | 420 | 0.0 | 536 |
| Msa0453010 | MtrunA17_Chr7g0266131 | 58.879 | 428 | 173 | 3 | 3 | 428 | 15 | 441 | 0.0 | 535 |
| Msa0453010 | MtrunA17_Chr7g0266151 | 60.794 | 403 | 152 | 5 | 22 | 420 | 27 | 427 | 2.57e-176 | 499 |
| Msa0453010 | MtrunA17_Chr4g0064541 | 42.067 | 416 | 212 | 8 | 43 | 432 | 55 | 467 | 4.80e-102 | 311 |
| Msa0453010 | MtrunA17_Chr6g0453731 | 38.241 | 489 | 203 | 11 | 14 | 411 | 47 | 527 | 5.53e-99 | 307 |
| Msa0453010 | MtrunA17_Chr4g0019091 | 42.892 | 415 | 203 | 11 | 29 | 410 | 35 | 448 | 1.12e-98 | 303 |
| Msa0453010 | MtrunA17_Chr7g0236041 | 38.574 | 477 | 191 | 9 | 43 | 420 | 70 | 543 | 2.22e-96 | 299 |
| Msa0453010 | MtrunA17_Chr3g0121411 | 39.738 | 458 | 183 | 9 | 43 | 410 | 71 | 525 | 5.58e-96 | 298 |
| Msa0453010 | MtrunA17_Chr3g0121431 | 39.606 | 457 | 187 | 10 | 43 | 411 | 126 | 581 | 3.76e-94 | 295 |
| Msa0453010 | MtrunA17_Chr1g0211041 | 41.218 | 427 | 215 | 12 | 18 | 410 | 26 | 450 | 9.64e-94 | 290 |
| Msa0453010 | MtrunA17_Chr4g0019071 | 47.735 | 287 | 131 | 6 | 143 | 410 | 39 | 325 | 9.81e-81 | 252 |
| Msa0453010 | MtrunA17_Chr4g0022251 | 29.819 | 332 | 186 | 9 | 56 | 347 | 231 | 555 | 3.25e-35 | 137 |
| Msa0453010 | MtrunA17_Chr1g0173511 | 30.523 | 344 | 180 | 13 | 56 | 347 | 94 | 430 | 8.90e-34 | 132 |
| Msa0453010 | MtrunA17_Chr4g0043001 | 26.327 | 471 | 262 | 15 | 43 | 432 | 144 | 610 | 1.06e-26 | 112 |
| Msa0453010 | MtrunA17_Chr4g0043021 | 26.651 | 424 | 227 | 14 | 37 | 382 | 138 | 555 | 1.54e-24 | 106 |
| Msa0453010 | MtrunA17_Chr3g0116051 | 25.290 | 431 | 250 | 14 | 54 | 418 | 192 | 616 | 2.99e-24 | 105 |
| Msa0453010 | MtrunA17_Chr3g0116091 | 24.762 | 420 | 219 | 13 | 56 | 419 | 35 | 413 | 6.21e-23 | 100 |
| Msa0453010 | MtrunA17_Chr4g0057551 | 25.429 | 350 | 206 | 10 | 99 | 399 | 253 | 596 | 9.97e-23 | 100 |
| Msa0453010 | MtrunA17_Chr5g0419621 | 25.556 | 360 | 211 | 11 | 99 | 408 | 245 | 597 | 1.26e-22 | 100 |
| Msa0453010 | MtrunA17_Chr8g0364481 | 26.257 | 358 | 211 | 12 | 99 | 408 | 238 | 590 | 6.29e-22 | 98.6 |
| Msa0453010 | MtrunA17_Chr4g0019081 | 34.965 | 143 | 77 | 7 | 17 | 145 | 30 | 170 | 9.65e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453010 | AT3G20500.1 | 73.550 | 431 | 114 | 0 | 3 | 433 | 7 | 437 | 0.0 | 696 |
| Msa0453010 | AT3G52820.1 | 61.954 | 389 | 147 | 1 | 26 | 413 | 30 | 418 | 0.0 | 520 |
| Msa0453010 | AT3G52780.1 | 58.491 | 424 | 165 | 8 | 3 | 418 | 5 | 425 | 6.83e-176 | 499 |
| Msa0453010 | AT3G52810.1 | 58.663 | 404 | 164 | 3 | 21 | 422 | 30 | 432 | 1.03e-173 | 493 |
| Msa0453010 | AT3G52780.2 | 57.612 | 335 | 132 | 7 | 3 | 330 | 5 | 336 | 7.81e-133 | 387 |
| Msa0453010 | AT5G34850.1 | 42.857 | 392 | 197 | 7 | 43 | 408 | 54 | 444 | 1.63e-100 | 308 |
| Msa0453010 | AT4G36350.1 | 39.778 | 450 | 229 | 14 | 1 | 410 | 1 | 448 | 2.05e-98 | 302 |
| Msa0453010 | AT1G56360.1 | 39.955 | 448 | 226 | 13 | 4 | 410 | 3 | 448 | 9.80e-98 | 301 |
| Msa0453010 | AT3G07130.1 | 40.639 | 438 | 175 | 6 | 58 | 411 | 80 | 516 | 2.66e-96 | 299 |
| Msa0453010 | AT2G27190.1 | 38.758 | 467 | 240 | 14 | 1 | 427 | 7 | 467 | 2.07e-92 | 287 |
| Msa0453010 | AT3G07130.2 | 37.792 | 471 | 175 | 7 | 58 | 411 | 80 | 549 | 1.57e-89 | 283 |
| Msa0453010 | AT2G16430.2 | 39.683 | 441 | 231 | 12 | 3 | 410 | 14 | 452 | 1.08e-88 | 277 |
| Msa0453010 | AT2G18130.1 | 38.318 | 428 | 221 | 12 | 10 | 410 | 18 | 429 | 1.21e-87 | 274 |
| Msa0453010 | AT4G13700.1 | 42.063 | 378 | 164 | 7 | 40 | 364 | 62 | 437 | 2.12e-86 | 271 |
| Msa0453010 | AT2G16430.1 | 42.331 | 326 | 164 | 8 | 109 | 410 | 7 | 332 | 2.69e-75 | 239 |
| Msa0453010 | AT2G32770.3 | 34.120 | 466 | 209 | 10 | 43 | 410 | 69 | 534 | 3.17e-71 | 234 |
| Msa0453010 | AT4G13700.2 | 39.589 | 341 | 151 | 7 | 40 | 327 | 62 | 400 | 8.16e-68 | 221 |
| Msa0453010 | AT3G46120.1 | 33.560 | 441 | 190 | 15 | 3 | 410 | 6 | 376 | 1.47e-63 | 210 |
| Msa0453010 | AT2G32770.2 | 35.792 | 366 | 161 | 5 | 93 | 384 | 62 | 427 | 9.47e-63 | 209 |
| Msa0453010 | AT2G32770.1 | 30.258 | 466 | 198 | 11 | 43 | 410 | 69 | 505 | 3.27e-54 | 189 |
| Msa0453010 | AT1G52940.1 | 36.404 | 228 | 127 | 9 | 43 | 253 | 15 | 241 | 6.76e-34 | 127 |
| Msa0453010 | AT2G03450.1 | 26.549 | 452 | 247 | 16 | 43 | 417 | 143 | 586 | 1.86e-24 | 106 |
| Msa0453010 | AT1G13900.1 | 25.771 | 454 | 258 | 16 | 43 | 423 | 145 | 592 | 3.62e-24 | 105 |
| Msa0453010 | AT1G13750.1 | 26.361 | 349 | 204 | 10 | 99 | 399 | 239 | 582 | 6.62e-22 | 99.0 |
| Msa0453010 | AT5G50400.2 | 26.000 | 350 | 204 | 13 | 99 | 399 | 165 | 508 | 1.19e-21 | 97.8 |
| Msa0453010 | AT5G50400.1 | 26.000 | 350 | 204 | 13 | 99 | 399 | 237 | 580 | 1.85e-21 | 97.4 |
| Msa0453010 | AT4G24890.1 | 26.901 | 342 | 191 | 12 | 99 | 390 | 241 | 573 | 2.65e-21 | 97.1 |
Find 123 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTCGGTGTGTCATTAT+TGG | 0.196347 | 3_3:+42933062 | None:intergenic |
| ATTCAGAAACCAACAATATT+AGG | 0.227486 | 3_3:+42929687 | None:intergenic |
| TATTATAGTACTTTGATATA+TGG | 0.235218 | 3_3:-42929759 | Msa0453010:three_prime_UTR |
| AGAGCATATACCTTTGTTAA+AGG | 0.247102 | 3_3:-42931834 | Msa0453010:CDS |
| CTCCATCGCCAATTGTTATA+TGG | 0.266178 | 3_3:+42930292 | None:intergenic |
| GCACCTTCGGTTGTAGAATA+TGG | 0.269575 | 3_3:-42932256 | Msa0453010:CDS |
| CCAACCACAGCAAAACTAAT+TGG | 0.273774 | 3_3:+42932049 | None:intergenic |
| GAGAGATAATATACAAAATA+TGG | 0.273908 | 3_3:+42929618 | None:intergenic |
| TGAGGAAATAAAGAAGATTA+AGG | 0.280941 | 3_3:+42929869 | None:intergenic |
| TAAACTCAACGCATGCCTTC+TGG | 0.303036 | 3_3:-42930022 | Msa0453010:CDS |
| AAGATACACCATACGGTAAT+AGG | 0.308885 | 3_3:-42932157 | Msa0453010:CDS |
| ACGTGTATATAATGGAAAAT+TGG | 0.322130 | 3_3:-42930331 | Msa0453010:CDS |
| TGTACTCAGAACAATATAAA+TGG | 0.324001 | 3_3:-42931679 | Msa0453010:CDS |
| TTTGCTGTGGTTGGAGATCT+TGG | 0.334048 | 3_3:-42932040 | Msa0453010:CDS |
| TAGCTCACCATGACCGAAAC+TGG | 0.338203 | 3_3:+42930052 | None:intergenic |
| CTGTAAAATCTGATGATATA+TGG | 0.338306 | 3_3:-42929971 | Msa0453010:CDS |
| TGACAGAAACGTGTATATAA+TGG | 0.346137 | 3_3:-42930339 | Msa0453010:intron |
| CAATGATATAACAAAGAGTT+TGG | 0.348112 | 3_3:-42929845 | Msa0453010:three_prime_UTR |
| ACCATCTTCTTATCCTCAAC+AGG | 0.385711 | 3_3:-42932869 | Msa0453010:intron |
| TACGATGTTAACCTGATTCC+TGG | 0.388167 | 3_3:-42931968 | Msa0453010:CDS |
| ATAGTATTTCCTAATATTGT+TGG | 0.393599 | 3_3:-42929696 | Msa0453010:three_prime_UTR |
| CTTGATCCACTTTCCTCAAA+TGG | 0.396116 | 3_3:+42931776 | None:intergenic |
| GAAGGACAAGAATGTACTTC+AGG | 0.397072 | 3_3:+42933023 | None:intergenic |
| CGGTAAAAGTAAACAGAATT+CGG | 0.397092 | 3_3:+42932124 | None:intergenic |
| TAAACAGAATTCGGCTCTAA+AGG | 0.397659 | 3_3:+42932133 | None:intergenic |
| CAGGCTCGTCATCGTCATTC+CGG | 0.397663 | 3_3:+42929991 | None:intergenic |
| ACGAAAGGTCGCCAGGAATC+AGG | 0.398861 | 3_3:+42931957 | None:intergenic |
| TTTGAGTTTCATTGTTATGC+TGG | 0.403756 | 3_3:+42932993 | None:intergenic |
| GATATGATCTAGTGTTGATT+TGG | 0.419534 | 3_3:+42932003 | None:intergenic |
| TCGGCATACGAAAGGTCGCC+AGG | 0.422584 | 3_3:+42931950 | None:intergenic |
| TTGATTTGGTCCAACCAGTT+TGG | 0.423131 | 3_3:+42932017 | None:intergenic |
| TCCTATGTTTACTTTAAAGT+TGG | 0.424763 | 3_3:-42929732 | Msa0453010:three_prime_UTR |
| GAGTTCCGTGAAGCCAGTTT+CGG | 0.437074 | 3_3:-42930065 | Msa0453010:CDS |
| AGAATCCCATGGAAGATGTA+AGG | 0.437809 | 3_3:+42932894 | None:intergenic |
| TATAACAAAGAGTTTGGTTG+TGG | 0.442002 | 3_3:-42929839 | Msa0453010:three_prime_UTR |
| TGTCAAAAGTGGACAGGAAA+AGG | 0.442525 | 3_3:-42930594 | Msa0453010:CDS |
| CAGGTACACATTTCATTGGC+AGG | 0.442548 | 3_3:-42932322 | Msa0453010:CDS |
| TTCCCTTGTGTTACCATCCA+TGG | 0.444697 | 3_3:+42931866 | None:intergenic |
| GTAGAAAATGTAACTGTAAG+AGG | 0.446204 | 3_3:+42932189 | None:intergenic |
| CATGACCGAAACTGGCTTCA+CGG | 0.449213 | 3_3:+42930060 | None:intergenic |
| CATATACCTTTGTTAAAGGA+TGG | 0.451005 | 3_3:-42931830 | Msa0453010:CDS |
| AAACAGAATTCGGCTCTAAA+GGG | 0.453881 | 3_3:+42932134 | None:intergenic |
| GGTGCTCACATTATCATGCT+TGG | 0.459315 | 3_3:-42931722 | Msa0453010:CDS |
| GTGGTTATTTGTGTAATCAA+TGG | 0.460910 | 3_3:-42929651 | Msa0453010:three_prime_UTR |
| AACTCTGACCACTTCGGCTG+TGG | 0.461187 | 3_3:+42930083 | None:intergenic |
| ATTCCAGGTACACATTTCAT+TGG | 0.465152 | 3_3:-42932326 | Msa0453010:intron |
| TGATGACAAATCTGCACCTT+CGG | 0.470584 | 3_3:-42932269 | Msa0453010:CDS |
| CAGCATCGTTGGGACACGTT+TGG | 0.476840 | 3_3:-42931920 | Msa0453010:CDS |
| GTAGAATATGGAACATTGCC+AGG | 0.484443 | 3_3:-42932244 | Msa0453010:CDS |
| GTTGGAGATCTTGGCCAAAC+TGG | 0.484735 | 3_3:-42932031 | Msa0453010:CDS |
| CGTGAAGCCAGTTTCGGTCA+TGG | 0.487528 | 3_3:-42930059 | Msa0453010:CDS |
| AGGTGAAGGTGGTGATATGA+TGG | 0.490466 | 3_3:-42930512 | Msa0453010:CDS |
| CGACTATATTCAGCATCGTT+GGG | 0.501801 | 3_3:-42931930 | Msa0453010:CDS |
| CAACGCATGCCTTCTGGAGT+TGG | 0.510276 | 3_3:-42930016 | Msa0453010:CDS |
| CCGACTATATTCAGCATCGT+TGG | 0.510775 | 3_3:-42931931 | Msa0453010:CDS |
| ATGCCTTCTGGAGTTGGCAC+CGG | 0.512720 | 3_3:-42930010 | Msa0453010:CDS |
| TGTTATGCTGGAAATAATGA+AGG | 0.516478 | 3_3:+42933005 | None:intergenic |
| ACCTGTTGAGGATAAGAAGA+TGG | 0.520924 | 3_3:+42932868 | None:intergenic |
| AGATTTGTCATCAGTGATCC+AGG | 0.525623 | 3_3:+42932279 | None:intergenic |
| GAGTATCTGCATTCTTCCCT+CGG | 0.525806 | 3_3:+42933048 | None:intergenic |
| GATTTATATCCTATAATTCG+AGG | 0.527909 | 3_3:-42931808 | Msa0453010:CDS |
| CATATAACAATTGGCGATGG+AGG | 0.529655 | 3_3:-42930291 | Msa0453010:CDS |
| GACAGGATCAGTAAAACTGT+TGG | 0.532369 | 3_3:+42932964 | None:intergenic |
| ACATCCTGAGTTAACTAAAG+AGG | 0.534798 | 3_3:+42929944 | None:intergenic |
| AGCATAAAGCAATGGCTCCA+TGG | 0.538411 | 3_3:+42930486 | None:intergenic |
| CGGATTTGTCAAAAGTGGAC+AGG | 0.539885 | 3_3:-42930600 | Msa0453010:CDS |
| ATAACCTCTTTAGTTAACTC+AGG | 0.542238 | 3_3:-42929948 | Msa0453010:CDS |
| AAACTAATTGGAAATTGAGC+TGG | 0.542505 | 3_3:+42932061 | None:intergenic |
| TTGTCATATTTCATGTGCCA+TGG | 0.543326 | 3_3:-42930558 | Msa0453010:CDS |
| GAGATCTTGGCCAAACTGGT+TGG | 0.544150 | 3_3:-42932027 | Msa0453010:CDS |
| GGCGATGGAGGGAACAAAGA+AGG | 0.546231 | 3_3:-42930279 | Msa0453010:CDS |
| GCTACATTGTCATACTTCCC+TGG | 0.548538 | 3_3:+42932226 | None:intergenic |
| AGAACAATATAAATGGCTAA+AGG | 0.548688 | 3_3:-42931672 | Msa0453010:intron |
| GAATATAGTCGGCATACGAA+AGG | 0.549941 | 3_3:+42931942 | None:intergenic |
| GGTTAACATCGTATCTGCAT+TGG | 0.564067 | 3_3:+42931978 | None:intergenic |
| TCTTTGTTATATCATTGTTG+AGG | 0.564702 | 3_3:+42929851 | None:intergenic |
| ATAAATCCATCCTTTAACAA+AGG | 0.566465 | 3_3:+42931824 | None:intergenic |
| ACAGACGGATTTGTCAAAAG+TGG | 0.566501 | 3_3:-42930605 | Msa0453010:intron |
| CAGCGGTTGAAGTTACTGAC+AGG | 0.567172 | 3_3:+42932947 | None:intergenic |
| TGCTAGTTCTAGACCATGGA+TGG | 0.576530 | 3_3:-42931879 | Msa0453010:CDS |
| GGTGCTGTCCATATAACAAT+TGG | 0.577462 | 3_3:-42930300 | Msa0453010:CDS |
| CTAAAGGGCCTATTACCGTA+TGG | 0.583259 | 3_3:+42932149 | None:intergenic |
| GAGGTGGAAAATGCCATTTG+AGG | 0.583883 | 3_3:-42931789 | Msa0453010:CDS |
| GTCCATATAACAATTGGCGA+TGG | 0.584299 | 3_3:-42930294 | Msa0453010:CDS |
| AAAATGCCATTTGAGGAAAG+TGG | 0.586799 | 3_3:-42931782 | Msa0453010:CDS |
| AATAGTAACACAGCTCATCA+AGG | 0.589055 | 3_3:-42930532 | Msa0453010:CDS |
| CCAACGATGCTGAATATAGT+CGG | 0.594807 | 3_3:+42931931 | None:intergenic |
| CGGGACCTTGTCCACCGCAT+CGG | 0.603027 | 3_3:+42932104 | None:intergenic |
| ATTCCGGTGCCAACTCCAGA+AGG | 0.606814 | 3_3:+42930007 | None:intergenic |
| GAAGATGGTTTAGAATCCCA+TGG | 0.606891 | 3_3:+42932883 | None:intergenic |
| ATATAGATCCACAGCCGAAG+TGG | 0.607631 | 3_3:-42930091 | Msa0453010:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.607943 | 3_3:-42930585 | Msa0453010:CDS |
| ACCAACTTTAAAGTAAACAT+AGG | 0.614102 | 3_3:+42929731 | None:intergenic |
| ATATAACAATTGGCGATGGA+GGG | 0.614723 | 3_3:-42930290 | Msa0453010:CDS |
| CTGAATAGAAAAGACAAGAG+TGG | 0.617040 | 3_3:-42929670 | Msa0453010:three_prime_UTR |
| ATCGTTGGGACACGTTTGGT+AGG | 0.618657 | 3_3:-42931916 | Msa0453010:CDS |
| AACACAGCTCATCAAGGTGA+AGG | 0.620113 | 3_3:-42930526 | Msa0453010:CDS |
| AAGGGTGTGTGAACCTGTTG+AGG | 0.620213 | 3_3:+42932856 | None:intergenic |
| AAGTATGACAATGTAGCTGA+AGG | 0.620469 | 3_3:-42932220 | Msa0453010:CDS |
| TGAAATATGACAAGCAACCA+AGG | 0.623138 | 3_3:+42930568 | None:intergenic |
| ACAAGCATATGAGAGTTACC+TGG | 0.624277 | 3_3:-42932297 | Msa0453010:CDS |
| ACGCTAGCAGCATAAAGCAA+TGG | 0.624653 | 3_3:+42930478 | None:intergenic |
| TGTCCACGCATATGAACGCT+CGG | 0.625969 | 3_3:-42930434 | Msa0453010:intron |
| CTAATTGGAAATTGAGCTGG+TGG | 0.628378 | 3_3:+42932064 | None:intergenic |
| CTCAGGAAAGATACACCATA+CGG | 0.635954 | 3_3:-42932164 | Msa0453010:CDS |
| ACAGCTCATCAAGGTGAAGG+TGG | 0.636860 | 3_3:-42930523 | Msa0453010:CDS |
| TAGAATATGGAACATTGCCA+GGG | 0.638513 | 3_3:-42932243 | Msa0453010:CDS |
| GGACAAGAATGTACTTCAGG+AGG | 0.640007 | 3_3:+42933026 | None:intergenic |
| TCACGGAACTCTGACCACTT+CGG | 0.641421 | 3_3:+42930077 | None:intergenic |
| GTTCCATATTCTACAACCGA+AGG | 0.641626 | 3_3:+42932253 | None:intergenic |
| TTATATCCTATAATTCGAGG+TGG | 0.646759 | 3_3:-42931805 | Msa0453010:CDS |
| CACCAATAATGACACACCGA+GGG | 0.664521 | 3_3:-42933064 | Msa0453010:five_prime_UTR |
| TGGTGATATGATGGAAACCA+TGG | 0.664924 | 3_3:-42930503 | Msa0453010:CDS |
| CACTTGCTAGTTCTAGACCA+TGG | 0.671317 | 3_3:-42931883 | Msa0453010:CDS |
| CTACCGAGCGTTCATATGCG+TGG | 0.675509 | 3_3:+42930431 | None:intergenic |
| CATGGTCTAGAACTAGCAAG+TGG | 0.681335 | 3_3:+42931884 | None:intergenic |
| AGACCATGGATGGTAACACA+AGG | 0.685999 | 3_3:-42931869 | Msa0453010:CDS |
| AGGTCTGACATAGTTATCAG+CGG | 0.699869 | 3_3:+42932930 | None:intergenic |
| GTTATATGGACAGCACCACA+AGG | 0.701668 | 3_3:+42930306 | None:intergenic |
| ACACCAATAATGACACACCG+AGG | 0.704807 | 3_3:-42933065 | None:intergenic |
| AATGGAAAATTGGATCCTTG+TGG | 0.706470 | 3_3:-42930321 | Msa0453010:CDS |
| GACCATGGATGGTAACACAA+GGG | 0.712669 | 3_3:-42931868 | Msa0453010:CDS |
| GCTGTGTTACTATTATACCA+TGG | 0.712732 | 3_3:+42930541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGTAATAAAGCAAAA+GGG | + | chr3_3:42929903-42929922 | None:intergenic | 15.0% |
| !! | TAATTAAGTAATAAAGCAAA+AGG | + | chr3_3:42929904-42929923 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCATATTATTAT+CGG | + | chr3_3:42931257-42931276 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAAATTTACTTAC+TGG | - | chr3_3:42932291-42932310 | Msa0453010:CDS | 15.0% |
| !! | TATTATAGTACTTTGATATA+TGG | - | chr3_3:42932927-42932946 | Msa0453010:CDS | 15.0% |
| !! | ATAAAGTAACATCCTTATAA+AGG | + | chr3_3:42930300-42930319 | None:intergenic | 20.0% |
| !! | AAATATTATGTGTCAACAAT+TGG | + | chr3_3:42931445-42931464 | None:intergenic | 20.0% |
| !! | TTCTATTCATATCTTTATGA+AGG | + | chr3_3:42931917-42931936 | None:intergenic | 20.0% |
| !! | ATAAAGATATGAATAGAATC+AGG | - | chr3_3:42931919-42931938 | Msa0453010:CDS | 20.0% |
| !! | TTCTCAATAACTATGTATAA+GGG | + | chr3_3:42931996-42932015 | None:intergenic | 20.0% |
| !! | TTTCTCAATAACTATGTATA+AGG | + | chr3_3:42931997-42932016 | None:intergenic | 20.0% |
| !! | TGAAAACTTCAAAAAACATT+TGG | + | chr3_3:42932460-42932479 | None:intergenic | 20.0% |
| !! | ATAGTATTTCCTAATATTGT+TGG | - | chr3_3:42932990-42933009 | Msa0453010:exon | 20.0% |
| ! | AAATGAGATGATGAAATGAA+GGG | + | chr3_3:42929851-42929870 | None:intergenic | 25.0% |
| ! | AAAATGAGATGATGAAATGA+AGG | + | chr3_3:42929852-42929871 | None:intergenic | 25.0% |
| !! | TTTTCATAAGCTCATTGAAT+TGG | + | chr3_3:42930145-42930164 | None:intergenic | 25.0% |
| ! | ATAAATCCATCCTTTAACAA+AGG | + | chr3_3:42930865-42930884 | None:intergenic | 25.0% |
| ! | GATTTATATCCTATAATTCG+AGG | - | chr3_3:42930878-42930897 | Msa0453010:intron | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+TGG | - | chr3_3:42930943-42930962 | Msa0453010:intron | 25.0% |
| ! | TGTACTCAGAACAATATAAA+TGG | - | chr3_3:42931007-42931026 | Msa0453010:intron | 25.0% |
| ! | AGAACAATATAAATGGCTAA+AGG | - | chr3_3:42931014-42931033 | Msa0453010:intron | 25.0% |
| ! | TTTCCAATTAAAGTATGTCT+TGG | - | chr3_3:42931115-42931134 | Msa0453010:intron | 25.0% |
| ! | TTCATAGTTTATAACCAGTT+CGG | + | chr3_3:42931181-42931200 | None:intergenic | 25.0% |
| ! | TATTTATAACCTATGAAGCA+CGG | + | chr3_3:42931346-42931365 | None:intergenic | 25.0% |
| ! | GTTATAAATAACTGTGAATG+TGG | - | chr3_3:42931356-42931375 | Msa0453010:intron | 25.0% |
| !!! | TTTTTTCACTTCTTGTTGTA+AGG | + | chr3_3:42931387-42931406 | None:intergenic | 25.0% |
| !!! | GTCTGTTTCTATTAAACTTT+AGG | - | chr3_3:42931567-42931586 | Msa0453010:intron | 25.0% |
| ! | AAGCAAAATATTGTTTAGCA+GGG | + | chr3_3:42931641-42931660 | None:intergenic | 25.0% |
| ! | AAAGCAAAATATTGTTTAGC+AGG | + | chr3_3:42931642-42931661 | None:intergenic | 25.0% |
| !! | ATATTTTGCTTTAGCAGTTT+TGG | - | chr3_3:42931650-42931669 | Msa0453010:intron | 25.0% |
| ! | TCTAAATGTTTGTCATTCAT+TGG | + | chr3_3:42931764-42931783 | None:intergenic | 25.0% |
| ! | AATTCAGATATTAGAGACTT+AGG | - | chr3_3:42931948-42931967 | Msa0453010:CDS | 25.0% |
| !!! | AAAAACTCTGAAGTTATAGT+AGG | - | chr3_3:42932028-42932047 | Msa0453010:CDS | 25.0% |
| !! | ACGTGTATATAATGGAAAAT+TGG | - | chr3_3:42932355-42932374 | Msa0453010:intron | 25.0% |
| !! | CATATATCATCAGATTTTAC+AGG | + | chr3_3:42932717-42932736 | None:intergenic | 25.0% |
| ! | CTGTAAAATCTGATGATATA+TGG | - | chr3_3:42932715-42932734 | Msa0453010:intron | 25.0% |
| !! | AAGAAGATTAAGGAGTTTTA+GGG | + | chr3_3:42932810-42932829 | None:intergenic | 25.0% |
| !! | AAAGAAGATTAAGGAGTTTT+AGG | + | chr3_3:42932811-42932830 | None:intergenic | 25.0% |
| ! | TGAGGAAATAAAGAAGATTA+AGG | + | chr3_3:42932820-42932839 | None:intergenic | 25.0% |
| !! | TCTTTGTTATATCATTGTTG+AGG | + | chr3_3:42932838-42932857 | None:intergenic | 25.0% |
| ! | CAATGATATAACAAAGAGTT+TGG | - | chr3_3:42932841-42932860 | Msa0453010:intron | 25.0% |
| !!! | TCCTATGTTTACTTTAAAGT+TGG | - | chr3_3:42932954-42932973 | Msa0453010:CDS | 25.0% |
| !!! | ACCAACTTTAAAGTAAACAT+AGG | + | chr3_3:42932958-42932977 | None:intergenic | 25.0% |
| ! | ATTCAGAAACCAACAATATT+AGG | + | chr3_3:42933002-42933021 | None:intergenic | 25.0% |
| TGTTATGCTGGAAATAATGA+AGG | + | chr3_3:42929684-42929703 | None:intergenic | 30.0% | |
| ! | TTTGAGTTTCATTGTTATGC+TGG | + | chr3_3:42929696-42929715 | None:intergenic | 30.0% |
| AAAAACCTTACATCTTCCAT+GGG | - | chr3_3:42929787-42929806 | Msa0453010:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTTGTCATGTGTTTC+TGG | - | chr3_3:42929959-42929978 | Msa0453010:CDS | 30.0% |
| !! | AAAACAGCTTATAGCTTGTT+TGG | - | chr3_3:42930161-42930180 | Msa0453010:intron | 30.0% |
| TGAAGCTGTTTATTCAAACA+AGG | - | chr3_3:42930272-42930291 | Msa0453010:CDS | 30.0% | |
| TCAAACAAGGAACCTTTATA+AGG | - | chr3_3:42930285-42930304 | Msa0453010:CDS | 30.0% | |
| GTAGAAAATGTAACTGTAAG+AGG | + | chr3_3:42930500-42930519 | None:intergenic | 30.0% | |
| CGGTAAAAGTAAACAGAATT+CGG | + | chr3_3:42930565-42930584 | None:intergenic | 30.0% | |
| AAACTAATTGGAAATTGAGC+TGG | + | chr3_3:42930628-42930647 | None:intergenic | 30.0% | |
| !!! | ATTTCCAATTAGTTTTGCTG+TGG | - | chr3_3:42930633-42930652 | Msa0453010:intron | 30.0% |
| !! | GATATGATCTAGTGTTGATT+TGG | + | chr3_3:42930686-42930705 | None:intergenic | 30.0% |
| AGAGCATATACCTTTGTTAA+AGG | - | chr3_3:42930852-42930871 | Msa0453010:intron | 30.0% | |
| CATATACCTTTGTTAAAGGA+TGG | - | chr3_3:42930856-42930875 | Msa0453010:intron | 30.0% | |
| TTATATCCTATAATTCGAGG+TGG | - | chr3_3:42930881-42930900 | Msa0453010:intron | 30.0% | |
| ATAAATGGCTAAAGGTTAGT+TGG | - | chr3_3:42931022-42931041 | Msa0453010:intron | 30.0% | |
| TAGCCAAGACATACTTTAAT+TGG | + | chr3_3:42931121-42931140 | None:intergenic | 30.0% | |
| TGGTTATAAACTATGAAGCA+CGG | - | chr3_3:42931184-42931203 | Msa0453010:intron | 30.0% | |
| TCTCATATTATTATCGGTGT+CGG | + | chr3_3:42931251-42931270 | None:intergenic | 30.0% | |
| TTCAGTGTAATCATTTGTGT+CGG | - | chr3_3:42931282-42931301 | Msa0453010:intron | 30.0% | |
| TATTATGTGTCAACAATTGG+AGG | + | chr3_3:42931442-42931461 | None:intergenic | 30.0% | |
| ACTAGAAACAGTGACATTTA+TGG | + | chr3_3:42931479-42931498 | None:intergenic | 30.0% | |
| TTGGATATGAAATATTGCCA+AGG | - | chr3_3:42931669-42931688 | Msa0453010:intron | 30.0% | |
| TTGCTATGTTGTTAATTCCT+TGG | + | chr3_3:42931689-42931708 | None:intergenic | 30.0% | |
| ATGCATTCATATGAAAACCT+AGG | - | chr3_3:42931713-42931732 | Msa0453010:CDS | 30.0% | |
| ! | ATTGGTTTCAATGCAAGTAA+GGG | + | chr3_3:42931746-42931765 | None:intergenic | 30.0% |
| !!! | GGCTTCTATTTTTATGTATG+TGG | + | chr3_3:42931896-42931915 | None:intergenic | 30.0% |
| TCAATAACTATGTATAAGGG+AGG | + | chr3_3:42931993-42932012 | None:intergenic | 30.0% | |
| TGACAGAAACGTGTATATAA+TGG | - | chr3_3:42932347-42932366 | Msa0453010:intron | 30.0% | |
| ! | TAGTATCGGAGAAAACTTAA+AGG | + | chr3_3:42932490-42932509 | None:intergenic | 30.0% |
| ATAACCTCTTTAGTTAACTC+AGG | - | chr3_3:42932738-42932757 | Msa0453010:intron | 30.0% | |
| TATAACAAAGAGTTTGGTTG+TGG | - | chr3_3:42932847-42932866 | Msa0453010:intron | 30.0% | |
| GTGGTTATTTGTGTAATCAA+TGG | - | chr3_3:42933035-42933054 | Msa0453010:five_prime_UTR | 30.0% | |
| ! | GGAAGATGTAAGGTTTTTCT+AGG | + | chr3_3:42929785-42929804 | None:intergenic | 35.0% |
| GAAAAACCTTACATCTTCCA+TGG | - | chr3_3:42929786-42929805 | Msa0453010:three_prime_UTR | 35.0% | |
| !! | TATTTCTAGTGAAGCTGCTA+AGG | - | chr3_3:42930074-42930093 | Msa0453010:CDS | 35.0% |
| !! | GCTAAGGTTGATTTGAGAAA+TGG | - | chr3_3:42930090-42930109 | Msa0453010:CDS | 35.0% |
| CATTGAATTGGATCTTCATC+TGG | + | chr3_3:42930133-42930152 | None:intergenic | 35.0% | |
| ! | ACATGAAAAGTGTGTATTCC+AGG | - | chr3_3:42930345-42930364 | Msa0453010:intron | 35.0% |
| ATTCCAGGTACACATTTCAT+TGG | - | chr3_3:42930360-42930379 | Msa0453010:intron | 35.0% | |
| TAGAATATGGAACATTGCCA+GGG | - | chr3_3:42930443-42930462 | Msa0453010:CDS | 35.0% | |
| AAGTATGACAATGTAGCTGA+AGG | - | chr3_3:42930466-42930485 | Msa0453010:CDS | 35.0% | |
| ! | AGTTACATTTTCTACAGCTC+AGG | - | chr3_3:42930505-42930524 | Msa0453010:CDS | 35.0% |
| AAGATACACCATACGGTAAT+AGG | - | chr3_3:42930529-42930548 | Msa0453010:CDS | 35.0% | |
| !! | AAACAGAATTCGGCTCTAAA+GGG | + | chr3_3:42930555-42930574 | None:intergenic | 35.0% |
| ! | TAAACAGAATTCGGCTCTAA+AGG | + | chr3_3:42930556-42930575 | None:intergenic | 35.0% |
| !! | TCTGTTTACTTTTACCGATG+CGG | - | chr3_3:42930568-42930587 | Msa0453010:CDS | 35.0% |
| ! | CATTTTCCACCTCGAATTAT+AGG | + | chr3_3:42930890-42930909 | None:intergenic | 35.0% |
| ! | AAAATGCCATTTGAGGAAAG+TGG | - | chr3_3:42930904-42930923 | Msa0453010:intron | 35.0% |
| GTCATTACATTCCAGACAAA+TGG | - | chr3_3:42931063-42931082 | Msa0453010:intron | 35.0% | |
| TACATTCCAGACAAATGGAA+TGG | - | chr3_3:42931068-42931087 | Msa0453010:intron | 35.0% | |
| ACATTCCAGACAAATGGAAT+GGG | - | chr3_3:42931069-42931088 | Msa0453010:intron | 35.0% | |
| TTACATGATATTCACCGAAC+TGG | - | chr3_3:42931164-42931183 | Msa0453010:intron | 35.0% | |
| CAAAATATTGTTTAGCAGGG+TGG | + | chr3_3:42931638-42931657 | None:intergenic | 35.0% | |
| !! | CATTGGTTTCAATGCAAGTA+AGG | + | chr3_3:42931747-42931766 | None:intergenic | 35.0% |
| ! | GAAGAAGCAACAGTTATTTC+TGG | + | chr3_3:42931797-42931816 | None:intergenic | 35.0% |
| TTGCACTTCATCATTACCAA+GGG | + | chr3_3:42931823-42931842 | None:intergenic | 35.0% | |
| TTTGCACTTCATCATTACCA+AGG | + | chr3_3:42931824-42931843 | None:intergenic | 35.0% | |
| ATGATGAAGTGCAAAATCCT+TGG | - | chr3_3:42931829-42931848 | Msa0453010:CDS | 35.0% | |
| TCTTCTTTGTGATCTACAGA+CGG | - | chr3_3:42932066-42932085 | Msa0453010:CDS | 35.0% | |
| TGAAATATGACAAGCAACCA+AGG | + | chr3_3:42932121-42932140 | None:intergenic | 35.0% | |
| TTGTCATATTTCATGTGCCA+TGG | - | chr3_3:42932128-42932147 | Msa0453010:CDS | 35.0% | |
| ! | GCTGTGTTACTATTATACCA+TGG | + | chr3_3:42932148-42932167 | None:intergenic | 35.0% |
| AATAGTAACACAGCTCATCA+AGG | - | chr3_3:42932154-42932173 | Msa0453010:CDS | 35.0% | |
| !!! | AGCGTTGATTTAGTTTTTGC+TGG | - | chr3_3:42932226-42932245 | Msa0453010:CDS | 35.0% |
| AATGGAAAATTGGATCCTTG+TGG | - | chr3_3:42932365-42932384 | Msa0453010:intron | 35.0% | |
| ATATAACAATTGGCGATGGA+GGG | - | chr3_3:42932396-42932415 | Msa0453010:intron | 35.0% | |
| ATCGGAGAAAACTTAAAGGT+TGG | + | chr3_3:42932486-42932505 | None:intergenic | 35.0% | |
| AAAAGGAACAGAGGTAGTAT+CGG | + | chr3_3:42932504-42932523 | None:intergenic | 35.0% | |
| ATCTTAGACGACACGTAAAA+AGG | + | chr3_3:42932521-42932540 | None:intergenic | 35.0% | |
| ACATCCTGAGTTAACTAAAG+AGG | + | chr3_3:42932745-42932764 | None:intergenic | 35.0% | |
| CTGAATAGAAAAGACAAGAG+TGG | - | chr3_3:42933016-42933035 | Msa0453010:five_prime_UTR | 35.0% | |
| GAAGGACAAGAATGTACTTC+AGG | + | chr3_3:42929666-42929685 | None:intergenic | 40.0% | |
| GACAGGATCAGTAAAACTGT+TGG | + | chr3_3:42929725-42929744 | None:intergenic | 40.0% | |
| AGGTCTGACATAGTTATCAG+CGG | + | chr3_3:42929759-42929778 | None:intergenic | 40.0% | |
| ! | TGTAAGGTTTTTCTAGGCTG+AGG | + | chr3_3:42929779-42929798 | None:intergenic | 40.0% |
| AGAATCCCATGGAAGATGTA+AGG | + | chr3_3:42929795-42929814 | None:intergenic | 40.0% | |
| ! | GAAGATGGTTTAGAATCCCA+TGG | + | chr3_3:42929806-42929825 | None:intergenic | 40.0% |
| ACCATCTTCTTATCCTCAAC+AGG | - | chr3_3:42929817-42929836 | Msa0453010:three_prime_UTR | 40.0% | |
| ACCTGTTGAGGATAAGAAGA+TGG | + | chr3_3:42929821-42929840 | None:intergenic | 40.0% | |
| !! | TTTGTCATGTGTTTCTGGCT+TGG | - | chr3_3:42929964-42929983 | Msa0453010:CDS | 40.0% |
| ACAAGCATATGAGAGTTACC+TGG | - | chr3_3:42930389-42930408 | Msa0453010:intron | 40.0% | |
| AGATTTGTCATCAGTGATCC+AGG | + | chr3_3:42930410-42930429 | None:intergenic | 40.0% | |
| TGATGACAAATCTGCACCTT+CGG | - | chr3_3:42930417-42930436 | Msa0453010:intron | 40.0% | |
| GTTCCATATTCTACAACCGA+AGG | + | chr3_3:42930436-42930455 | None:intergenic | 40.0% | |
| GTAGAATATGGAACATTGCC+AGG | - | chr3_3:42930442-42930461 | Msa0453010:CDS | 40.0% | |
| CTCAGGAAAGATACACCATA+CGG | - | chr3_3:42930522-42930541 | Msa0453010:CDS | 40.0% | |
| !! | TGGTGTTTTGAGCTGTAACT+CGG | + | chr3_3:42930605-42930624 | None:intergenic | 40.0% |
| CTAATTGGAAATTGAGCTGG+TGG | + | chr3_3:42930625-42930644 | None:intergenic | 40.0% | |
| CCAACCACAGCAAAACTAAT+TGG | + | chr3_3:42930640-42930659 | None:intergenic | 40.0% | |
| !!! | CCAATTAGTTTTGCTGTGGT+TGG | - | chr3_3:42930637-42930656 | Msa0453010:intron | 40.0% |
| !! | TTGATTTGGTCCAACCAGTT+TGG | + | chr3_3:42930672-42930691 | None:intergenic | 40.0% |
| GGTTAACATCGTATCTGCAT+TGG | + | chr3_3:42930711-42930730 | None:intergenic | 40.0% | |
| TACGATGTTAACCTGATTCC+TGG | - | chr3_3:42930718-42930737 | Msa0453010:intron | 40.0% | |
| GAATATAGTCGGCATACGAA+AGG | + | chr3_3:42930747-42930766 | None:intergenic | 40.0% | |
| CCAACGATGCTGAATATAGT+CGG | + | chr3_3:42930758-42930777 | None:intergenic | 40.0% | |
| CGACTATATTCAGCATCGTT+GGG | - | chr3_3:42930756-42930775 | Msa0453010:intron | 40.0% | |
| CTTGATCCACTTTCCTCAAA+TGG | + | chr3_3:42930913-42930932 | None:intergenic | 40.0% | |
| TAGATCCCATTCCATTTGTC+TGG | + | chr3_3:42931077-42931096 | None:intergenic | 40.0% | |
| AATGTCAGACACCATTGCAT+GGG | - | chr3_3:42931314-42931333 | Msa0453010:intron | 40.0% | |
| !! | ATTGGAGGCATCTAGAAAAC+AGG | + | chr3_3:42931427-42931446 | None:intergenic | 40.0% |
| ACGAAACATCACAAGGTTCA+TGG | + | chr3_3:42931532-42931551 | None:intergenic | 40.0% | |
| CTGTAACACGAAACATCACA+AGG | + | chr3_3:42931539-42931558 | None:intergenic | 40.0% | |
| CTTGTGATGTTTCGTGTTAC+AGG | - | chr3_3:42931537-42931556 | Msa0453010:intron | 40.0% | |
| AATGCATGCATCTGTTACCA+AGG | + | chr3_3:42931849-42931868 | None:intergenic | 40.0% | |
| GCATGCATTGCATTTGCATA+TGG | - | chr3_3:42931860-42931879 | Msa0453010:CDS | 40.0% | |
| CATTGCATTTGCATATGGCT+AGG | - | chr3_3:42931865-42931884 | Msa0453010:CDS | 40.0% | |
| ! | ACAGACGGATTTGTCAAAAG+TGG | - | chr3_3:42932081-42932100 | Msa0453010:CDS | 40.0% |
| TGTCAAAAGTGGACAGGAAA+AGG | - | chr3_3:42932092-42932111 | Msa0453010:CDS | 40.0% | |
| ! | TGGTGATATGATGGAAACCA+TGG | - | chr3_3:42932183-42932202 | Msa0453010:CDS | 40.0% |
| ! | GGTGCTGTCCATATAACAAT+TGG | - | chr3_3:42932386-42932405 | Msa0453010:intron | 40.0% |
| GTCCATATAACAATTGGCGA+TGG | - | chr3_3:42932392-42932411 | Msa0453010:intron | 40.0% | |
| CTCCATCGCCAATTGTTATA+TGG | + | chr3_3:42932397-42932416 | None:intergenic | 40.0% | |
| CATATAACAATTGGCGATGG+AGG | - | chr3_3:42932395-42932414 | Msa0453010:intron | 40.0% | |
| CCATGACGCAACAATACAAA+CGG | + | chr3_3:42932562-42932581 | None:intergenic | 40.0% | |
| ATTGTTGCGTCATGGATGTT+TGG | - | chr3_3:42932567-42932586 | Msa0453010:intron | 40.0% | |
| GAGTATCTGCATTCTTCCCT+CGG | + | chr3_3:42929641-42929660 | None:intergenic | 45.0% | |
| GGACAAGAATGTACTTCAGG+AGG | + | chr3_3:42929663-42929682 | None:intergenic | 45.0% | |
| CTGCCAATGAAATGTGTACC+TGG | + | chr3_3:42930366-42930385 | None:intergenic | 45.0% | |
| CAGGTACACATTTCATTGGC+AGG | - | chr3_3:42930364-42930383 | Msa0453010:intron | 45.0% | |
| GCACCTTCGGTTGTAGAATA+TGG | - | chr3_3:42930430-42930449 | Msa0453010:intron | 45.0% | |
| GCTACATTGTCATACTTCCC+TGG | + | chr3_3:42930463-42930482 | None:intergenic | 45.0% | |
| CTAAAGGGCCTATTACCGTA+TGG | + | chr3_3:42930540-42930559 | None:intergenic | 45.0% | |
| !! | GTTTACTTTTACCGATGCGG+TGG | - | chr3_3:42930571-42930590 | Msa0453010:CDS | 45.0% |
| !! | GGTGTTTTGAGCTGTAACTC+GGG | + | chr3_3:42930604-42930623 | None:intergenic | 45.0% |
| ! | TTTGCTGTGGTTGGAGATCT+TGG | - | chr3_3:42930646-42930665 | Msa0453010:intron | 45.0% |
| CCGACTATATTCAGCATCGT+TGG | - | chr3_3:42930755-42930774 | Msa0453010:intron | 45.0% | |
| ! | CATGGTCTAGAACTAGCAAG+TGG | + | chr3_3:42930805-42930824 | None:intergenic | 45.0% |
| !! | CACTTGCTAGTTCTAGACCA+TGG | - | chr3_3:42930803-42930822 | Msa0453010:intron | 45.0% |
| !! | TGCTAGTTCTAGACCATGGA+TGG | - | chr3_3:42930807-42930826 | Msa0453010:intron | 45.0% |
| AGACCATGGATGGTAACACA+AGG | - | chr3_3:42930817-42930836 | Msa0453010:intron | 45.0% | |
| GACCATGGATGGTAACACAA+GGG | - | chr3_3:42930818-42930837 | Msa0453010:intron | 45.0% | |
| TTCCCTTGTGTTACCATCCA+TGG | + | chr3_3:42930823-42930842 | None:intergenic | 45.0% | |
| ! | GAGGTGGAAAATGCCATTTG+AGG | - | chr3_3:42930897-42930916 | Msa0453010:intron | 45.0% |
| GGTGCTCACATTATCATGCT+TGG | - | chr3_3:42930964-42930983 | Msa0453010:intron | 45.0% | |
| ATGAAGCACGGACACAAACA+TGG | - | chr3_3:42931196-42931215 | Msa0453010:intron | 45.0% | |
| CAATGTCAGACACCATTGCA+TGG | - | chr3_3:42931313-42931332 | Msa0453010:intron | 45.0% | |
| ATGTCAGACACCATTGCATG+GGG | - | chr3_3:42931315-42931334 | Msa0453010:intron | 45.0% | |
| ! | CTGTTGCTTCTTCTTTCCCT+TGG | - | chr3_3:42931804-42931823 | Msa0453010:CDS | 45.0% |
| CGGATTTGTCAAAAGTGGAC+AGG | - | chr3_3:42932086-42932105 | Msa0453010:CDS | 45.0% | |
| AACACAGCTCATCAAGGTGA+AGG | - | chr3_3:42932160-42932179 | Msa0453010:CDS | 45.0% | |
| AGGTGAAGGTGGTGATATGA+TGG | - | chr3_3:42932174-42932193 | Msa0453010:CDS | 45.0% | |
| AGCATAAAGCAATGGCTCCA+TGG | + | chr3_3:42932203-42932222 | None:intergenic | 45.0% | |
| ACGCTAGCAGCATAAAGCAA+TGG | + | chr3_3:42932211-42932230 | None:intergenic | 45.0% | |
| GTTATATGGACAGCACCACA+AGG | + | chr3_3:42932383-42932402 | None:intergenic | 45.0% | |
| CGACACGTAAAAAGGAACAG+AGG | + | chr3_3:42932513-42932532 | None:intergenic | 45.0% | |
| CCGTTTGTATTGTTGCGTCA+TGG | - | chr3_3:42932559-42932578 | Msa0453010:intron | 45.0% | |
| ATATAGATCCACAGCCGAAG+TGG | - | chr3_3:42932595-42932614 | Msa0453010:intron | 45.0% | |
| TAAACTCAACGCATGCCTTC+TGG | - | chr3_3:42932664-42932683 | Msa0453010:intron | 45.0% | |
| CAGCGGTTGAAGTTACTGAC+AGG | + | chr3_3:42929742-42929761 | None:intergenic | 50.0% | |
| ! | AAGGGTGTGTGAACCTGTTG+AGG | + | chr3_3:42929833-42929852 | None:intergenic | 50.0% |
| ! | TTTTACCGATGCGGTGGACA+AGG | - | chr3_3:42930577-42930596 | Msa0453010:CDS | 50.0% |
| GTTGGAGATCTTGGCCAAAC+TGG | - | chr3_3:42930655-42930674 | Msa0453010:intron | 50.0% | |
| GAGATCTTGGCCAAACTGGT+TGG | - | chr3_3:42930659-42930678 | Msa0453010:intron | 50.0% | |
| ATCGTTGGGACACGTTTGGT+AGG | - | chr3_3:42930770-42930789 | Msa0453010:intron | 50.0% | |
| !! | TATTATCGGTGTCGGCGTGT+CGG | + | chr3_3:42931243-42931262 | None:intergenic | 50.0% |
| TGGACAGGAAAAGGACACCT+TGG | - | chr3_3:42932101-42932120 | Msa0453010:CDS | 50.0% | |
| ACAGCTCATCAAGGTGAAGG+TGG | - | chr3_3:42932163-42932182 | Msa0453010:CDS | 50.0% | |
| TGTCCACGCATATGAACGCT+CGG | - | chr3_3:42932252-42932271 | Msa0453010:CDS | 50.0% | |
| TTGCGTCATGGATGTTTGGC+AGG | - | chr3_3:42932571-42932590 | Msa0453010:intron | 50.0% | |
| TCACGGAACTCTGACCACTT+CGG | + | chr3_3:42932612-42932631 | None:intergenic | 50.0% | |
| GAGTTCCGTGAAGCCAGTTT+CGG | - | chr3_3:42932621-42932640 | Msa0453010:intron | 50.0% | |
| ! | CATGACCGAAACTGGCTTCA+CGG | + | chr3_3:42932629-42932648 | None:intergenic | 50.0% |
| TAGCTCACCATGACCGAAAC+TGG | + | chr3_3:42932637-42932656 | None:intergenic | 50.0% | |
| ACGAAAGGTCGCCAGGAATC+AGG | + | chr3_3:42930732-42930751 | None:intergenic | 55.0% | |
| CAGCATCGTTGGGACACGTT+TGG | - | chr3_3:42930766-42930785 | Msa0453010:intron | 55.0% | |
| CACGGACATTCCCCATGCAA+TGG | + | chr3_3:42931328-42931347 | None:intergenic | 55.0% | |
| GGGGAATGTCCGTGCTTCAT+AGG | - | chr3_3:42931334-42931353 | Msa0453010:intron | 55.0% | |
| !! | CAAGTAAGGGCGCTAGTCCT+AGG | + | chr3_3:42931733-42931752 | None:intergenic | 55.0% |
| CTACCGAGCGTTCATATGCG+TGG | + | chr3_3:42932258-42932277 | None:intergenic | 55.0% | |
| CACGCATATGAACGCTCGGT+AGG | - | chr3_3:42932256-42932275 | Msa0453010:CDS | 55.0% | |
| GGCGATGGAGGGAACAAAGA+AGG | - | chr3_3:42932407-42932426 | Msa0453010:intron | 55.0% | |
| AACTCTGACCACTTCGGCTG+TGG | + | chr3_3:42932606-42932625 | None:intergenic | 55.0% | |
| CGTGAAGCCAGTTTCGGTCA+TGG | - | chr3_3:42932627-42932646 | Msa0453010:intron | 55.0% | |
| !! | CAACGCATGCCTTCTGGAGT+TGG | - | chr3_3:42932670-42932689 | Msa0453010:intron | 55.0% |
| !! | ATGCCTTCTGGAGTTGGCAC+CGG | - | chr3_3:42932676-42932695 | Msa0453010:intron | 55.0% |
| ! | ATTCCGGTGCCAACTCCAGA+AGG | + | chr3_3:42932682-42932701 | None:intergenic | 55.0% |
| CAGGCTCGTCATCGTCATTC+CGG | + | chr3_3:42932698-42932717 | None:intergenic | 55.0% | |
| TCGGCATACGAAAGGTCGCC+AGG | + | chr3_3:42930739-42930758 | None:intergenic | 60.0% | |
| CGGGACCTTGTCCACCGCAT+CGG | + | chr3_3:42930585-42930604 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42929625 | 42933083 | 42929625 | ID=Msa0453010;Name=Msa0453010 |
| chr3_3 | mRNA | 42929625 | 42933083 | 42929625 | ID=Msa0453010-mRNA-1;Parent=Msa0453010;Name=Msa0453010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=79|1|1|1|1|1|5|271|433 |
| chr3_3 | exon | 42929625 | 42930115 | 42929625 | ID=Msa0453010-mRNA-1:exon:7773;Parent=Msa0453010-mRNA-1 |
| chr3_3 | exon | 42930267 | 42930355 | 42930267 | ID=Msa0453010-mRNA-1:exon:7772;Parent=Msa0453010-mRNA-1 |
| chr3_3 | exon | 42930435 | 42930623 | 42930435 | ID=Msa0453010-mRNA-1:exon:7771;Parent=Msa0453010-mRNA-1 |
| chr3_3 | exon | 42931673 | 42932341 | 42931673 | ID=Msa0453010-mRNA-1:exon:7770;Parent=Msa0453010-mRNA-1 |
| chr3_3 | exon | 42932870 | 42933083 | 42932870 | ID=Msa0453010-mRNA-1:exon:7769;Parent=Msa0453010-mRNA-1 |
| chr3_3 | five_prime_UTR | 42933005 | 42933083 | 42933005 | ID=Msa0453010-mRNA-1:five_prime_utr;Parent=Msa0453010-mRNA-1 |
| chr3_3 | CDS | 42932870 | 42933004 | 42932870 | ID=Msa0453010-mRNA-1:cds;Parent=Msa0453010-mRNA-1 |
| chr3_3 | CDS | 42931673 | 42932341 | 42931673 | ID=Msa0453010-mRNA-1:cds;Parent=Msa0453010-mRNA-1 |
| chr3_3 | CDS | 42930435 | 42930623 | 42930435 | ID=Msa0453010-mRNA-1:cds;Parent=Msa0453010-mRNA-1 |
| chr3_3 | CDS | 42930267 | 42930355 | 42930267 | ID=Msa0453010-mRNA-1:cds;Parent=Msa0453010-mRNA-1 |
| chr3_3 | CDS | 42929896 | 42930115 | 42929896 | ID=Msa0453010-mRNA-1:cds;Parent=Msa0453010-mRNA-1 |
| chr3_3 | three_prime_UTR | 42929625 | 42929895 | 42929625 | ID=Msa0453010-mRNA-1:three_prime_utr;Parent=Msa0453010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
