Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410270 | RHN67346.1 | 49.057 | 106 | 23 | 4 | 88 | 164 | 12 | 115 | 1.82e-17 | 84.7 |
| Msa0410270 | RHN67346.1 | 49.123 | 114 | 25 | 3 | 3 | 83 | 2 | 115 | 2.78e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410270 | A0A396INQ1 | 49.057 | 106 | 23 | 4 | 88 | 164 | 12 | 115 | 8.68e-18 | 84.7 |
| Msa0410270 | A0A396INQ1 | 49.123 | 114 | 25 | 3 | 3 | 83 | 2 | 115 | 1.33e-21 | 94.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0410270 | Msa0659960 | 0.801973 | 6.991735e-49 | -8.615850e-47 |
| Msa0410270 | Msa0662860 | 0.806655 | 7.401003e-50 | -8.615850e-47 |
| Msa0410270 | Msa0978000 | 0.808409 | 3.141733e-50 | -8.615850e-47 |
| Msa0410270 | Msa1220740 | 0.801922 | 7.164913e-49 | -8.615850e-47 |
| Msa0410270 | Msa1267860 | 0.810410 | 1.168535e-50 | -8.615850e-47 |
| Msa0410270 | Msa1316170 | 0.811896 | 5.566164e-51 | -8.615850e-47 |
| Msa0410270 | Msa1422760 | 0.801957 | 7.044664e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410270 | MtrunA17_Chr3g0101771 | 49.123 | 114 | 25 | 3 | 3 | 83 | 2 | 115 | 2.56e-25 | 94.7 |
| Msa0410270 | MtrunA17_Chr3g0101771 | 49.057 | 106 | 23 | 4 | 88 | 164 | 12 | 115 | 1.67e-21 | 84.7 |
| Msa0410270 | MtrunA17_Chr7g0223411 | 33.023 | 215 | 96 | 7 | 3 | 171 | 2 | 214 | 8.29e-24 | 93.2 |
| Msa0410270 | MtrunA17_Chr7g0223501 | 51.613 | 62 | 29 | 1 | 3 | 64 | 2 | 62 | 5.64e-13 | 64.7 |
| Msa0410270 | MtrunA17_Chr7g0223421 | 34.426 | 122 | 60 | 4 | 3 | 124 | 5 | 106 | 2.80e-11 | 60.1 |
| Msa0410270 | MtrunA17_Chr7g0223461 | 34.921 | 126 | 61 | 5 | 3 | 128 | 2 | 106 | 4.18e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCGGATGCCGCGTCTTC+AGG | 0.352793 | 3_2:-51880376 | Msa0410270:CDS |
| ATTGCGGATGCCGCGTCTTC+AGG | 0.352793 | 3_2:-51883735 | Msa0410270:intron |
| TGTGTGTTGATGATTATTCA+TGG | 0.400124 | 3_2:+51883998 | None:intergenic |
| CGCTTTCGCATTCTCCTAGT+TGG | 0.402566 | 3_2:+51880475 | None:intergenic |
| CGCTTTCGCATTCTCCTAGT+TGG | 0.402566 | 3_2:+51883834 | None:intergenic |
| ATGGTTTCGATAAGATTTCC+AGG | 0.419284 | 3_2:+51880397 | None:intergenic |
| ATGGTTTCGATAAGATTTCC+AGG | 0.419284 | 3_2:+51883756 | None:intergenic |
| ACATTACAACGGAAAGAATC+AGG | 0.446306 | 3_2:-51883978 | Msa0410270:CDS |
| CACGTTCAACACATTCTGTA+TGG | 0.464988 | 3_2:+51880509 | None:intergenic |
| CACGTTCAACACATTCTGTA+TGG | 0.464988 | 3_2:+51883868 | None:intergenic |
| CAACCACTGCATATGTATGT+TGG | 0.494531 | 3_2:+51880592 | None:intergenic |
| CAACCACTGCACGTGTATGT+TGG | 0.519756 | 3_2:+51883951 | None:intergenic |
| GGTTGTAAACAGCTAGGTTG+TGG | 0.525742 | 3_2:-51880574 | Msa0410270:CDS |
| GGTTGTAAACAGCTAGGTTG+TGG | 0.525742 | 3_2:-51883933 | Msa0410270:CDS |
| GTGTTCAACATAGGCCAACT+AGG | 0.549255 | 3_2:-51880489 | Msa0410270:CDS |
| GTGTTCAACATAGGCCAACT+AGG | 0.549255 | 3_2:-51883848 | Msa0410270:CDS |
| GTGTTGAACGTGTTCAACAT+AGG | 0.586827 | 3_2:-51880498 | Msa0410270:CDS |
| GTGTTGAACGTGTTCAACAT+AGG | 0.586827 | 3_2:-51883857 | Msa0410270:CDS |
| TGAAGACGCGGCATCCGCAA+TGG | 0.596505 | 3_2:+51880378 | None:intergenic |
| TGAAGACGCGGCATCCGCAA+TGG | 0.596505 | 3_2:+51883737 | None:intergenic |
| TGCAGTGGTTGTAAACAGCT+AGG | 0.626030 | 3_2:-51880580 | Msa0410270:CDS |
| TGCAGTGGTTGTAAACAGCT+AGG | 0.638202 | 3_2:-51883939 | Msa0410270:CDS |
| ATCATCAACACACATTACAA+CGG | 0.649543 | 3_2:-51883989 | Msa0410270:CDS |
| TGTCCAACATACACGTGCAG+TGG | 0.675034 | 3_2:-51883954 | Msa0410270:CDS |
| TGTCCAACATACATATGCAG+TGG | 0.677060 | 3_2:-51880595 | Msa0410270:CDS |
| GTTCAACACATTCTGTATGG+AGG | 0.682160 | 3_2:+51880512 | None:intergenic |
| GTTCAACACATTCTGTATGG+AGG | 0.682160 | 3_2:+51883871 | None:intergenic |
| AAATCTTATCGAAACCATTG+CGG | 0.690419 | 3_2:-51880392 | Msa0410270:CDS |
| AAATCTTATCGAAACCATTG+CGG | 0.690419 | 3_2:-51883751 | Msa0410270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr3_2:51883322-51883341 | None:intergenic | 0.0% |
| !!! | ATAATCGAATAATATTTTAA+TGG | - | chr3_2:51881514-51881533 | Msa0410270:intron | 10.0% |
| !!! | TATTTTCTTATATTTAGTTT+AGG | - | chr3_2:51881601-51881620 | Msa0410270:intron | 10.0% |
| !!! | ATTTTCTTATATTTAGTTTA+GGG | - | chr3_2:51881602-51881621 | Msa0410270:intron | 10.0% |
| !!! | TATTATTTATGCTATTTTAT+GGG | + | chr3_2:51881748-51881767 | None:intergenic | 10.0% |
| !!! | ATATTATTTATGCTATTTTA+TGG | + | chr3_2:51881749-51881768 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGAGAAAAGAAA+AGG | + | chr3_2:51880887-51880906 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTTTTTTTTTTTG+TGG | - | chr3_2:51880893-51880912 | Msa0410270:intron | 15.0% |
| !!! | AAAAAGCTTTTATTGTAAAA+TGG | + | chr3_2:51881267-51881286 | None:intergenic | 15.0% |
| !!! | TTTATTGTGTATTTTTTGAA+TGG | + | chr3_2:51881577-51881596 | None:intergenic | 15.0% |
| !!! | TTTTCTTATATTTAGTTTAG+GGG | - | chr3_2:51881603-51881622 | Msa0410270:intron | 15.0% |
| !! | AAAATATTTATAACGAATCA+AGG | - | chr3_2:51881643-51881662 | Msa0410270:intron | 15.0% |
| !!! | GGTTATTTTTATGATTTTTA+GGG | + | chr3_2:51882305-51882324 | None:intergenic | 15.0% |
| !!! | TTTTTTGCAAAAAAAAAAAG+TGG | - | chr3_2:51882518-51882537 | Msa0410270:intron | 15.0% |
| !! | TAAAATGATAATTAAGGAAA+AGG | - | chr3_2:51882553-51882572 | Msa0410270:intron | 15.0% |
| !! | AAAATGATAATTAAGGAAAA+GGG | - | chr3_2:51882554-51882573 | Msa0410270:intron | 15.0% |
| !!! | TTATTTAAAACACATTCTTC+CGG | + | chr3_2:51880795-51880814 | None:intergenic | 20.0% |
| !! | TTTATTGTAAAATGGATGAA+CGG | + | chr3_2:51881259-51881278 | None:intergenic | 20.0% |
| !! | AAATTAACTTATTGCTGATA+AGG | + | chr3_2:51881446-51881465 | None:intergenic | 20.0% |
| !! | ATCAGCAATAAGTTAATTTA+TGG | - | chr3_2:51881447-51881466 | Msa0410270:intron | 20.0% |
| !! | TTATTCGATTATAATGCTAA+AGG | + | chr3_2:51881506-51881525 | None:intergenic | 20.0% |
| !!! | GGGTTATTTTTATGATTTTT+AGG | + | chr3_2:51882306-51882325 | None:intergenic | 20.0% |
| !!! | TTTTAGGGTAAAACATTTTA+GGG | + | chr3_2:51882326-51882345 | None:intergenic | 20.0% |
| !!! | TTTTTAGGGTAAAACATTTT+AGG | + | chr3_2:51882327-51882346 | None:intergenic | 20.0% |
| !! | TAACGCTAAAATGATAATTA+AGG | - | chr3_2:51882547-51882566 | Msa0410270:intron | 20.0% |
| !! | TCTTACAATTATATGTATGT+CGG | - | chr3_2:51882709-51882728 | Msa0410270:intron | 20.0% |
| !!! | TTCTAAAATACTCTCTAAAA+TGG | - | chr3_2:51883198-51883217 | Msa0410270:intron | 20.0% |
| !!! | ACAACCATTTATTTTTTAGA+AGG | - | chr3_2:51883471-51883490 | Msa0410270:intron | 20.0% |
| ! | GTGAAATTAATATCAACCAA+CGG | + | chr3_2:51880720-51880739 | None:intergenic | 25.0% |
| !!! | TCTATTTTAGTATTGCTGTT+TGG | - | chr3_2:51880916-51880935 | Msa0410270:intron | 25.0% |
| !! | ACAAACATTCAATTTTCGTA+TGG | + | chr3_2:51880972-51880991 | None:intergenic | 25.0% |
| ! | CGAAAATTGAATGTTTGTAA+TGG | - | chr3_2:51880974-51880993 | Msa0410270:intron | 25.0% |
| ! | TTATGGAAGCTATACTAAAA+TGG | + | chr3_2:51881015-51881034 | None:intergenic | 25.0% |
| !!! | TCCATAAGCCTTTTTTTAAA+AGG | - | chr3_2:51881028-51881047 | Msa0410270:intron | 25.0% |
| ! | TTTGCAAAAAAAAAAAGTGG+TGG | - | chr3_2:51882521-51882540 | Msa0410270:intron | 25.0% |
| ! | GTAAGCAATTATATGTATGT+CGG | - | chr3_2:51882676-51882695 | Msa0410270:intron | 25.0% |
| ! | ACTAAGTGAATAAAAACGTT+AGG | + | chr3_2:51882735-51882754 | None:intergenic | 25.0% |
| ! | GAATGCAATTATATGTATGT+CGG | - | chr3_2:51882759-51882778 | Msa0410270:intron | 25.0% |
| ! | GTTCAATTAATTTACTTGTG+TGG | + | chr3_2:51882868-51882887 | None:intergenic | 25.0% |
| ! | AACCTAAACAAGATAGTAAT+TGG | - | chr3_2:51882885-51882904 | Msa0410270:intron | 25.0% |
| !!! | GTTTTTTACTTCTCATATTG+AGG | + | chr3_2:51883078-51883097 | None:intergenic | 25.0% |
| ! | ATATGAGAAGTAAAAAACCA+TGG | - | chr3_2:51883080-51883099 | Msa0410270:intron | 25.0% |
| ! | TATGAGAAGTAAAAAACCAT+GGG | - | chr3_2:51883081-51883100 | Msa0410270:intron | 25.0% |
| !! | TACTCTTTTCTTTTACATAG+CGG | + | chr3_2:51883124-51883143 | None:intergenic | 25.0% |
| !! | TATACACTTGAGTGTATTTT+TGG | + | chr3_2:51883238-51883257 | None:intergenic | 25.0% |
| !! | CTCACCTTCTAAAAAATAAA+TGG | + | chr3_2:51883478-51883497 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | - | chr3_2:51883519-51883538 | Msa0410270:intron | 25.0% |
| !! | TTAATGAGCGTTTAAGATTT+AGG | + | chr3_2:51883654-51883673 | None:intergenic | 25.0% |
| !!! | GTGTTGATGATTATTATTCA+TGG | + | chr3_2:51883720-51883739 | None:intergenic | 25.0% |
| ATCATCAACACACATTACAA+CGG | - | chr3_2:51880370-51880389 | Msa0410270:CDS | 30.0% | |
| ! | AAAAACTACGCTGATTAGTA+AGG | + | chr3_2:51880577-51880596 | None:intergenic | 30.0% |
| AAATCTTATCGAAACCATTG+CGG | - | chr3_2:51880608-51880627 | Msa0410270:intron | 30.0% | |
| !! | TTTTAGAAACTCTTTTCCGT+TGG | - | chr3_2:51880701-51880720 | Msa0410270:intron | 30.0% |
| !! | ATCTTTTTCATTTCAACCAC+CGG | - | chr3_2:51880773-51880792 | Msa0410270:intron | 30.0% |
| ! | ATTCAATTTTCGTATGGCAA+AGG | + | chr3_2:51880966-51880985 | None:intergenic | 30.0% |
| !! | GCCTTTTAAAAAAAGGCTTA+TGG | + | chr3_2:51881032-51881051 | None:intergenic | 30.0% |
| !! | AGTGCATGCCTTTTAAAAAA+AGG | + | chr3_2:51881039-51881058 | None:intergenic | 30.0% |
| ! | TTTAAGTTATGTGAGAAAGC+AGG | - | chr3_2:51881285-51881304 | Msa0410270:intron | 30.0% |
| ATAATGCTAAAGGAACACAA+AGG | + | chr3_2:51881496-51881515 | None:intergenic | 30.0% | |
| ! | GGGGTCAATTTTTATTGTTT+TGG | - | chr3_2:51881907-51881926 | Msa0410270:intron | 30.0% |
| TCAACCAACTTCAGAATATT+TGG | - | chr3_2:51881979-51881998 | Msa0410270:intron | 30.0% | |
| !! | ATGTCCAAATATTCTGAAGT+TGG | + | chr3_2:51881986-51882005 | None:intergenic | 30.0% |
| TGAAGATGGAATTATTTCAC+CGG | + | chr3_2:51882036-51882055 | None:intergenic | 30.0% | |
| AAAATGCGAAAAAACACGTT+TGG | + | chr3_2:51882066-51882085 | None:intergenic | 30.0% | |
| AATTATATGTATGTCGGCAT+GGG | - | chr3_2:51882682-51882701 | Msa0410270:intron | 30.0% | |
| AATTATATGTATGTCGGCAT+GGG | - | chr3_2:51882682-51882701 | Msa0410270:intron | 30.0% | |
| ! | TGCCAATTACTATCTTGTTT+AGG | + | chr3_2:51882890-51882909 | None:intergenic | 30.0% |
| TGCCTTATGAGATATAAAGT+TGG | - | chr3_2:51882910-51882929 | Msa0410270:intron | 30.0% | |
| AGCCAACTTTATATCTCATA+AGG | + | chr3_2:51882915-51882934 | None:intergenic | 30.0% | |
| !! | ATATAAAGTTGGCTTGATGA+CGG | - | chr3_2:51882921-51882940 | Msa0410270:intron | 30.0% |
| CACTCTTAAGTATGAGATTA+AGG | + | chr3_2:51883379-51883398 | None:intergenic | 30.0% | |
| AATCTCATACTTAAGAGTGA+AGG | - | chr3_2:51883380-51883399 | Msa0410270:intron | 30.0% | |
| !!! | ACACCTATTAGTTTTTACGT+GGG | + | chr3_2:51883564-51883583 | None:intergenic | 30.0% |
| ATCATCAACACACATTACAA+CGG | - | chr3_2:51880370-51880389 | Msa0410270:CDS | 30.0% | |
| ! | AAAAACTACGCTGATTAGTA+AGG | + | chr3_2:51880577-51880596 | None:intergenic | 30.0% |
| AAATCTTATCGAAACCATTG+CGG | - | chr3_2:51880608-51880627 | Msa0410270:intron | 30.0% | |
| ACATTACAACGGAAAGAATC+AGG | - | chr3_2:51880381-51880400 | Msa0410270:CDS | 35.0% | |
| ATGGTTTCGATAAGATTTCC+AGG | + | chr3_2:51880606-51880625 | None:intergenic | 35.0% | |
| TCAACAAGAAGCAAGTACAT+TGG | + | chr3_2:51880751-51880770 | None:intergenic | 35.0% | |
| ! | TTTAAAACACATTCTTCCGG+TGG | + | chr3_2:51880792-51880811 | None:intergenic | 35.0% |
| GGAACACAGAGAAAACAAAT+GGG | + | chr3_2:51880945-51880964 | None:intergenic | 35.0% | |
| AGGAACACAGAGAAAACAAA+TGG | + | chr3_2:51880946-51880965 | None:intergenic | 35.0% | |
| TTATGTGAGAAAGCAGGAAA+TGG | - | chr3_2:51881291-51881310 | Msa0410270:intron | 35.0% | |
| CGTGCTTTCATGAAATTTAC+CGG | - | chr3_2:51881353-51881372 | Msa0410270:intron | 35.0% | |
| GAAATTTACCGGCATATTAG+CGG | - | chr3_2:51881364-51881383 | Msa0410270:intron | 35.0% | |
| TTATCATCATCGTCAATCTG+TGG | - | chr3_2:51881722-51881741 | Msa0410270:intron | 35.0% | |
| GGTAAATAACTGACAAACTC+TGG | + | chr3_2:51881813-51881832 | None:intergenic | 35.0% | |
| AGTTTGTCAGTTATTTACCC+TGG | - | chr3_2:51881814-51881833 | Msa0410270:intron | 35.0% | |
| !! | ATGTGCCACTTAGAATTTGT+GGG | - | chr3_2:51881887-51881906 | Msa0410270:intron | 35.0% |
| !!! | TCAATGTCTTTTCAAGTAGC+CGG | - | chr3_2:51882014-51882033 | Msa0410270:intron | 35.0% |
| TACGATATATATGACCTGTG+CGG | + | chr3_2:51882398-51882417 | None:intergenic | 35.0% | |
| CAATTATATGTATGTCGGCA+TGG | - | chr3_2:51882681-51882700 | Msa0410270:intron | 35.0% | |
| CAATTATATGTATGTCGGCA+TGG | - | chr3_2:51882681-51882700 | Msa0410270:intron | 35.0% | |
| GAAATTCTTACAATGGCCTA+GGG | - | chr3_2:51882787-51882806 | Msa0410270:intron | 35.0% | |
| AAATTCTTACAATGGCCTAG+GGG | - | chr3_2:51882788-51882807 | Msa0410270:intron | 35.0% | |
| CAGCAGAGTGATAAATGTTA+GGG | - | chr3_2:51882950-51882969 | Msa0410270:intron | 35.0% | |
| AATAACACACAAGATTCACG+TGG | - | chr3_2:51883046-51883065 | Msa0410270:intron | 35.0% | |
| TTTGTCCTCATCACTATAAG+AGG | + | chr3_2:51883155-51883174 | None:intergenic | 35.0% | |
| TCTTATAGTGATGAGGACAA+AGG | - | chr3_2:51883154-51883173 | Msa0410270:intron | 35.0% | |
| ATATATGGAAGCAACGTGAA+AGG | + | chr3_2:51883307-51883326 | None:intergenic | 35.0% | |
| TGCTTCTATAGACATTTGCT+AGG | - | chr3_2:51883446-51883465 | Msa0410270:intron | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | + | chr3_2:51883537-51883556 | None:intergenic | 35.0% |
| ACTCCCACGTAAAAACTAAT+AGG | - | chr3_2:51883558-51883577 | Msa0410270:intron | 35.0% | |
| !!! | CACACCTATTAGTTTTTACG+TGG | + | chr3_2:51883565-51883584 | None:intergenic | 35.0% |
| ACATTACAACGGAAAGAATC+AGG | - | chr3_2:51880381-51880400 | Msa0410270:CDS | 35.0% | |
| ATGGTTTCGATAAGATTTCC+AGG | + | chr3_2:51880606-51880625 | None:intergenic | 35.0% | |
| GTTCAACACATTCTGTATGG+AGG | + | chr3_2:51880491-51880510 | None:intergenic | 40.0% | |
| CACGTTCAACACATTCTGTA+TGG | + | chr3_2:51880494-51880513 | None:intergenic | 40.0% | |
| GTGTTGAACGTGTTCAACAT+AGG | - | chr3_2:51880502-51880521 | Msa0410270:CDS | 40.0% | |
| !! | ATGCGAAAGCGTGTTTTCTT+CGG | - | chr3_2:51880537-51880556 | Msa0410270:CDS | 40.0% |
| ! | AGCGTAGTTTTTGTTGATCC+TGG | - | chr3_2:51880585-51880604 | Msa0410270:CDS | 40.0% |
| TCACTCAAGTTCCGGTTTAT+CGG | + | chr3_2:51881097-51881116 | None:intergenic | 40.0% | |
| TTCGATCATCACTCAAGTTC+CGG | + | chr3_2:51881105-51881124 | None:intergenic | 40.0% | |
| AGCAAAATCACTATGTGCAG+TGG | - | chr3_2:51881138-51881157 | Msa0410270:intron | 40.0% | |
| GGTTGTAAAGAGCAAGGTTA+CGG | - | chr3_2:51881159-51881178 | Msa0410270:intron | 40.0% | |
| !!! | TGCAATTGCTGTTTTCACAG+TGG | + | chr3_2:51881194-51881213 | None:intergenic | 40.0% |
| GTTCAGCACATTCTATATGG+AGG | + | chr3_2:51881224-51881243 | None:intergenic | 40.0% | |
| CACGTTCAGCACATTCTATA+TGG | + | chr3_2:51881227-51881246 | None:intergenic | 40.0% | |
| AGTTATTTACCCTGGAGTGA+GGG | - | chr3_2:51881822-51881841 | Msa0410270:intron | 40.0% | |
| CACAAATTCTAAGTGGCACA+TGG | + | chr3_2:51881888-51881907 | None:intergenic | 40.0% | |
| !! | CATGTGCCACTTAGAATTTG+TGG | - | chr3_2:51881886-51881905 | Msa0410270:intron | 40.0% |
| !! | TGTGCCACTTAGAATTTGTG+GGG | - | chr3_2:51881888-51881907 | Msa0410270:intron | 40.0% |
| TTGACCCCACAAATTCTAAG+TGG | + | chr3_2:51881895-51881914 | None:intergenic | 40.0% | |
| GGCTACTTGAAAAGACATTG+AGG | + | chr3_2:51882015-51882034 | None:intergenic | 40.0% | |
| ! | CGTTTGGAATGAAGTGAAGA+TGG | + | chr3_2:51882050-51882069 | None:intergenic | 40.0% |
| ! | GCATTTTGTCTAAACCGACT+AGG | - | chr3_2:51882079-51882098 | Msa0410270:intron | 40.0% |
| AACCTCGTAGATTGAAGGTT+CGG | + | chr3_2:51882189-51882208 | None:intergenic | 40.0% | |
| GAAACAACCTCGTAGATTGA+AGG | + | chr3_2:51882194-51882213 | None:intergenic | 40.0% | |
| GGCATGGGAAATTCTTACAA+TGG | - | chr3_2:51882697-51882716 | Msa0410270:intron | 40.0% | |
| GGAAATTCTTACAATGGCCT+AGG | - | chr3_2:51882786-51882805 | Msa0410270:intron | 40.0% | |
| GCAGCAGAGTGATAAATGTT+AGG | - | chr3_2:51882949-51882968 | Msa0410270:intron | 40.0% | |
| AAGCACAGGATCAATGCAAT+TGG | - | chr3_2:51882990-51883009 | Msa0410270:intron | 40.0% | |
| AGCACAGGATCAATGCAATT+GGG | - | chr3_2:51882991-51883010 | Msa0410270:intron | 40.0% | |
| CAAGTCCTCTTATAGTGATG+AGG | - | chr3_2:51883147-51883166 | Msa0410270:intron | 40.0% | |
| GTCTATAGAAGCAACGTGAA+AGG | + | chr3_2:51883439-51883458 | None:intergenic | 40.0% | |
| TGTCCAACATACATATGCAG+TGG | - | chr3_2:51883764-51883783 | Msa0410270:CDS | 40.0% | |
| CAACCACTGCATATGTATGT+TGG | + | chr3_2:51883770-51883789 | None:intergenic | 40.0% | |
| GTTCAACACATTCTGTATGG+AGG | + | chr3_2:51880491-51880510 | None:intergenic | 40.0% | |
| CACGTTCAACACATTCTGTA+TGG | + | chr3_2:51880494-51880513 | None:intergenic | 40.0% | |
| GTGTTGAACGTGTTCAACAT+AGG | - | chr3_2:51880502-51880521 | Msa0410270:CDS | 40.0% | |
| !! | ATGCGAAAGCGTGTTTTCTT+CGG | - | chr3_2:51880537-51880556 | Msa0410270:CDS | 40.0% |
| ! | AGCGTAGTTTTTGTTGATCC+TGG | - | chr3_2:51880585-51880604 | Msa0410270:CDS | 40.0% |
| TGCAGTGGTTGTAAACAGCT+AGG | - | chr3_2:51880420-51880439 | Msa0410270:CDS | 45.0% | |
| GGTTGTAAACAGCTAGGTTG+TGG | - | chr3_2:51880426-51880445 | Msa0410270:CDS | 45.0% | |
| GTGTTCAACATAGGCCAACT+AGG | - | chr3_2:51880511-51880530 | Msa0410270:CDS | 45.0% | |
| CTCGAAAAAACCTGAAGACG+CGG | + | chr3_2:51880637-51880656 | None:intergenic | 45.0% | |
| TGATGTCTCCTCCGATAAAC+CGG | - | chr3_2:51881083-51881102 | Msa0410270:intron | 45.0% | |
| TGCAGTGGTTGTAAAGAGCA+AGG | - | chr3_2:51881153-51881172 | Msa0410270:intron | 45.0% | |
| TGTGAGAAAGCAGGAAATGG+TGG | - | chr3_2:51881294-51881313 | Msa0410270:intron | 45.0% | |
| !! | GGTGGATTTTGTGATGCTTG+TGG | - | chr3_2:51881312-51881331 | Msa0410270:intron | 45.0% |
| ! | GGATTTTGTGATGCTTGTGG+AGG | - | chr3_2:51881315-51881334 | Msa0410270:intron | 45.0% |
| TGATGCTTGTGGAGGTCAAA+AGG | - | chr3_2:51881323-51881342 | Msa0410270:intron | 45.0% | |
| GATGCTTGTGGAGGTCAAAA+GGG | - | chr3_2:51881324-51881343 | Msa0410270:intron | 45.0% | |
| GAACTTCACCGCTAATATGC+CGG | + | chr3_2:51881375-51881394 | None:intergenic | 45.0% | |
| ATATTAGCGGTGAAGTTCCG+TGG | - | chr3_2:51881377-51881396 | Msa0410270:intron | 45.0% | |
| ATGGGAAAAACCTGAAGCCA+CGG | + | chr3_2:51881397-51881416 | None:intergenic | 45.0% | |
| TTGGCTGTGAAAGATGCTTC+GGG | + | chr3_2:51881694-51881713 | None:intergenic | 45.0% | |
| CTTGGCTGTGAAAGATGCTT+CGG | + | chr3_2:51881695-51881714 | None:intergenic | 45.0% | |
| GATGATGATAAGCATGCGCT+TGG | + | chr3_2:51881713-51881732 | None:intergenic | 45.0% | |
| CAGTTATTTACCCTGGAGTG+AGG | - | chr3_2:51881821-51881840 | Msa0410270:intron | 45.0% | |
| CCAAGTCAAGCACAAGCTAA+AGG | + | chr3_2:51881947-51881966 | None:intergenic | 45.0% | |
| !! | CCTTTAGCTTGTGCTTGACT+TGG | - | chr3_2:51881944-51881963 | Msa0410270:intron | 45.0% |
| GTTCAACTGAGTCACCTAGT+CGG | + | chr3_2:51882096-51882115 | None:intergenic | 45.0% | |
| CAACCACTTGTAGTCGTAAG+AGG | + | chr3_2:51882151-51882170 | None:intergenic | 45.0% | |
| CAAGTGGTTGAGTTACACCA+AGG | - | chr3_2:51882161-51882180 | Msa0410270:intron | 45.0% | |
| TGCAGTGGTTGTAAACAGCT+AGG | - | chr3_2:51880420-51880439 | Msa0410270:CDS | 45.0% | |
| GGTTGTAAACAGCTAGGTTG+TGG | - | chr3_2:51880426-51880445 | Msa0410270:CDS | 45.0% | |
| GTGTTCAACATAGGCCAACT+AGG | - | chr3_2:51880511-51880530 | Msa0410270:CDS | 45.0% | |
| CTCGAAAAAACCTGAAGACG+CGG | + | chr3_2:51880637-51880656 | None:intergenic | 45.0% | |
| !! | TATTGAAATTAATTAAATAT+GGG | + | chr3_2:51881415-51881434 | None:intergenic | 5.0% |
| !! | TTATTGAAATTAATTAAATA+TGG | + | chr3_2:51881416-51881435 | None:intergenic | 5.0% |
| !!! | TTATGTTTTTTTTTTTTTTA+GGG | + | chr3_2:51882341-51882360 | None:intergenic | 5.0% |
| !!! | TTTATGTTTTTTTTTTTTTT+AGG | + | chr3_2:51882342-51882361 | None:intergenic | 5.0% |
| TGTCCAACATACACGTGCAG+TGG | - | chr3_2:51880405-51880424 | Msa0410270:CDS | 50.0% | |
| CAACCACTGCACGTGTATGT+TGG | + | chr3_2:51880411-51880430 | None:intergenic | 50.0% | |
| CGCTTTCGCATTCTCCTAGT+TGG | + | chr3_2:51880528-51880547 | None:intergenic | 50.0% | |
| CTCAAGTTCCGGTTTATCGG+AGG | + | chr3_2:51881094-51881113 | None:intergenic | 50.0% | |
| TGTGAAAGATGCTTCGGGCA+CGG | + | chr3_2:51881689-51881708 | None:intergenic | 50.0% | |
| GTGCCTCTTACGACTACAAG+TGG | - | chr3_2:51882145-51882164 | Msa0410270:intron | 50.0% | |
| !! | AGATTGAAGGTTCGGTGCCT+TGG | + | chr3_2:51882181-51882200 | None:intergenic | 50.0% |
| CACCGAACCTTCAATCTACG+AGG | - | chr3_2:51882184-51882203 | Msa0410270:intron | 50.0% | |
| GCCTAGGGGTCTATACATGT+GGG | - | chr3_2:51882802-51882821 | Msa0410270:intron | 50.0% | |
| CCTAGGGGTCTATACATGTG+GGG | - | chr3_2:51882803-51882822 | Msa0410270:intron | 50.0% | |
| CTAGGGGTCTATACATGTGG+GGG | - | chr3_2:51882804-51882823 | Msa0410270:intron | 50.0% | |
| CGCTTTCGCATTCTCCTAGT+TGG | + | chr3_2:51880528-51880547 | None:intergenic | 50.0% | |
| AGATGCTTCGGGCACGGTAA+TGG | + | chr3_2:51881683-51881702 | None:intergenic | 55.0% | |
| TTACCCTGGAGTGAGGGACA+CGG | - | chr3_2:51881828-51881847 | Msa0410270:intron | 55.0% | |
| ATATGACCTGTGCGGCAGCA+CGG | + | chr3_2:51882390-51882409 | None:intergenic | 55.0% | |
| GGCCTAGGGGTCTATACATG+TGG | - | chr3_2:51882801-51882820 | Msa0410270:intron | 55.0% | |
| CCCCACATGTATAGACCCCT+AGG | + | chr3_2:51882806-51882825 | None:intergenic | 55.0% | |
| TCAGCGCAATGCTGAAGCAC+AGG | - | chr3_2:51882976-51882995 | Msa0410270:intron | 55.0% | |
| ACTTTGCTCGTGATCGCCCA+TGG | + | chr3_2:51883100-51883119 | None:intergenic | 55.0% | |
| TGAAGACGCGGCATCCGCAA+TGG | + | chr3_2:51880625-51880644 | None:intergenic | 60.0% | |
| ATTGCGGATGCCGCGTCTTC+AGG | - | chr3_2:51880624-51880643 | Msa0410270:intron | 60.0% | |
| CGGTGAAGTTCCGTGGCTTC+AGG | - | chr3_2:51881384-51881403 | Msa0410270:intron | 60.0% | |
| TAGCCGTGTCCCTCACTCCA+GGG | + | chr3_2:51881834-51881853 | None:intergenic | 60.0% | |
| TATGACCTGTGCGGCAGCAC+GGG | + | chr3_2:51882389-51882408 | None:intergenic | 60.0% | |
| TGAAGACGCGGCATCCGCAA+TGG | + | chr3_2:51880625-51880644 | None:intergenic | 60.0% | |
| ATTGCGGATGCCGCGTCTTC+AGG | - | chr3_2:51880624-51880643 | Msa0410270:intron | 60.0% | |
| GTAGCCGTGTCCCTCACTCC+AGG | + | chr3_2:51881835-51881854 | None:intergenic | 65.0% | |
| TTCCACCCGTGCTGCCGCAC+AGG | - | chr3_2:51882381-51882400 | Msa0410270:intron | 70.0% | |
| GACCTGTGCGGCAGCACGGG+TGG | + | chr3_2:51882386-51882405 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 51880363 | 51884018 | 51880363 | ID=Msa0410270;Name=Msa0410270 |
| chr3_2 | mRNA | 51880363 | 51884018 | 51880363 | ID=Msa0410270-mRNA-1;Parent=Msa0410270;Name=Msa0410270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|3|0|173 |
| chr3_2 | exon | 51883813 | 51884018 | 51883813 | ID=Msa0410270-mRNA-1:exon:10227;Parent=Msa0410270-mRNA-1 |
| chr3_2 | exon | 51883736 | 51883794 | 51883736 | ID=Msa0410270-mRNA-1:exon:10226;Parent=Msa0410270-mRNA-1 |
| chr3_2 | exon | 51880363 | 51880619 | 51880363 | ID=Msa0410270-mRNA-1:exon:10225;Parent=Msa0410270-mRNA-1 |
| chr3_2 | CDS | 51883813 | 51884018 | 51883813 | ID=Msa0410270-mRNA-1:cds;Parent=Msa0410270-mRNA-1 |
| chr3_2 | CDS | 51883736 | 51883794 | 51883736 | ID=Msa0410270-mRNA-1:cds;Parent=Msa0410270-mRNA-1 |
| chr3_2 | CDS | 51880363 | 51880619 | 51880363 | ID=Msa0410270-mRNA-1:cds;Parent=Msa0410270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
