AlfalfaGEDB | Msa1267860

M. sativa cultivar zhongmu-4 / Msa1267860

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267860	XP_013444563.1	96.411	418	14	1	1	418	1	417	0.0	837

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267860	sp\|Q9MAM1\|CIPK9_ARATH	76.156	411	95	2	11	418	12	422	0.0	664

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267860	A0A072TP12	96.411	418	14	1	1	418	1	417	0.0	837

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1267860	0.843485	1.361688e-58	-8.615850e-47
Msa0006700	Msa1267860	0.800324	1.520105e-48	-8.615850e-47
Msa0006820	Msa1267860	0.804859	1.764713e-49	-8.615850e-47
Msa0007450	Msa1267860	0.806894	6.589977e-50	-8.615850e-47
Msa0008850	Msa1267860	0.832424	9.531180e-56	-8.615850e-47
Msa0017120	Msa1267860	0.841935	3.513688e-58	-8.615850e-47
Msa0034340	Msa1267860	0.822206	2.681362e-53	-8.615850e-47
Msa0039200	Msa1267860	0.837508	4.988635e-57	-8.615850e-47
Msa0042220	Msa1267860	0.832089	1.153048e-55	-8.615850e-47
Msa0042250	Msa1267860	0.814213	1.727866e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267860	MtrunA17_Chr8g0346081	96.411	418	14	1	1	418	1	417	0.0	837
Msa1267860	MtrunA17_Chr8g0346071	95.933	418	15	2	1	418	1	416	0.0	818
Msa1267860	MtrunA17_Chr5g0441011	68.204	412	127	3	10	418	5	415	0.0	593
Msa1267860	MtrunA17_Chr2g0304111	66.024	415	132	4	12	418	17	430	0.0	578
Msa1267860	MtrunA17_Chr4g0063881	57.385	413	172	1	10	418	3	415	0.0	517
Msa1267860	MtrunA17_Chr5g0428031	55.981	418	177	3	14	424	5	422	1.10e-177	504
Msa1267860	MtrunA17_Chr4g0013131	53.269	413	186	5	17	424	11	421	1.75e-154	445
Msa1267860	MtrunA17_Chr7g0244521	52.745	419	184	7	17	424	11	426	6.91e-152	439
Msa1267860	MtrunA17_Chr2g0284031	49.887	443	184	9	15	424	28	465	2.62e-145	424
Msa1267860	MtrunA17_Chr8g0379091	48.786	453	191	9	15	433	23	468	1.00e-144	422

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267860	AT1G01140.3	76.156	411	95	2	11	418	12	422	0.0	664
Msa1267860	AT1G01140.1	76.156	411	95	2	11	418	12	422	0.0	664
Msa1267860	AT1G01140.2	75.787	413	95	3	11	418	12	424	0.0	659
Msa1267860	AT1G30270.1	69.903	412	115	4	15	418	28	438	0.0	604
Msa1267860	AT1G30270.2	69.903	412	115	4	15	418	28	438	0.0	602
Msa1267860	AT5G21326.1	65.777	412	137	3	10	418	5	415	0.0	576
Msa1267860	AT2G26980.4	65.049	412	140	3	10	418	16	426	0.0	573
Msa1267860	AT2G26980.3	65.049	412	140	3	10	418	6	416	0.0	573
Msa1267860	AT2G26980.5	64.691	388	133	3	10	394	6	392	0.0	533
Msa1267860	AT2G26980.1	64.499	369	127	3	10	375	6	373	2.39e-180	508

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Find 94 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTATCAAAATATTTG+AGG	0.445305	8_3:-44202	Msa1267860:intron
AAACTCACCGTTATAGGGTT+CGG	0.342613	8_3:+42346	None:intergenic
AACAAAGATTTACATTGTTT+TGG	0.229912	8_3:-43633	Msa1267860:CDS
AACGTTAAATCCGAGAGGTT+TGG	0.426114	8_3:+41484	None:intergenic
AACTCACCGTTATAGGGTTC+GGG	0.350524	8_3:+42347	None:intergenic
AAGCTGCAGGGTGATAAAAG+TGG	0.627481	8_3:-41296	Msa1267860:CDS
AAGGAAGGGTCACCTTTCAG+TGG	0.665930	8_3:-41273	Msa1267860:CDS
AAGGTAGTGACGAATGAGGA+TGG	0.506502	8_3:+44772	None:intergenic
AAGGTATCCTTGGGAGAGTC+TGG	0.401703	8_3:-40142	Msa1267860:three_prime_UTR
AATTATGCAGATGAAGCTGC+AGG	0.488937	8_3:-41309	Msa1267860:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTAGATACGCAAACTATA+TGG	+	chr8_3:40054-40073	None:intergenic	30.0%
TTTCGTTACTTAAACGTACT+TGG	+	chr8_3:40088-40107	None:intergenic	30.0%
TTGGCTAAGAATGTTGAAAA+TGG	-	chr8_3:40296-40315	Msa1267860:intron	30.0%
AAAGGGGAAATGTGAAATAA+AGG	+	chr8_3:41217-41236	None:intergenic	30.0%
GATCCAAAACAAGTAAAAAG+GGG	+	chr8_3:41233-41252	None:intergenic	30.0%
ACTTCATGAATAATGAGCTA+TGG	+	chr8_3:41492-41511	None:intergenic	30.0%
ACTATACCTCAAGAATTCTA+AGG	-	chr8_3:41537-41556	Msa1267860:CDS	30.0%
AATCTACCTTAGAATTCTTG+AGG	+	chr8_3:41546-41565	None:intergenic	30.0%
CTTAATGATAGAGGTTATGT+TGG	-	chr8_3:42126-42145	Msa1267860:CDS	30.0%
AGTCATTCTCTTTGTACTTA+TGG	-	chr8_3:42176-42195	Msa1267860:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	39952	44848	39952	ID=Msa1267860;Name=Msa1267860
chr8_3	mRNA	39952	44848	39952	ID=Msa1267860-mRNA-1;Parent=Msa1267860;Name=Msa1267860-mRNA-1;_AED=0.23;_eAED=0.23;_QI=189\|0.92\|0.93\|1\|0.92\|0.86\|15\|232\|435
chr8_3	exon	39952	40233	39952	ID=Msa1267860-mRNA-1:exon:28;Parent=Msa1267860-mRNA-1
chr8_3	exon	40440	40518	40440	ID=Msa1267860-mRNA-1:exon:27;Parent=Msa1267860-mRNA-1
chr8_3	exon	41265	41321	41265	ID=Msa1267860-mRNA-1:exon:26;Parent=Msa1267860-mRNA-1
chr8_3	exon	41466	41582	41466	ID=Msa1267860-mRNA-1:exon:25;Parent=Msa1267860-mRNA-1
chr8_3	exon	41761	41868	41761	ID=Msa1267860-mRNA-1:exon:24;Parent=Msa1267860-mRNA-1
chr8_3	exon	42124	42246	42124	ID=Msa1267860-mRNA-1:exon:23;Parent=Msa1267860-mRNA-1
chr8_3	exon	42354	42443	42354	ID=Msa1267860-mRNA-1:exon:22;Parent=Msa1267860-mRNA-1
chr8_3	exon	42552	42677	42552	ID=Msa1267860-mRNA-1:exon:21;Parent=Msa1267860-mRNA-1
chr8_3	exon	42768	42821	42768	ID=Msa1267860-mRNA-1:exon:20;Parent=Msa1267860-mRNA-1
chr8_3	exon	42900	42974	42900	ID=Msa1267860-mRNA-1:exon:19;Parent=Msa1267860-mRNA-1
chr8_3	exon	43110	43217	43110	ID=Msa1267860-mRNA-1:exon:18;Parent=Msa1267860-mRNA-1
chr8_3	exon	43598	43669	43598	ID=Msa1267860-mRNA-1:exon:17;Parent=Msa1267860-mRNA-1
chr8_3	exon	44203	44265	44203	ID=Msa1267860-mRNA-1:exon:16;Parent=Msa1267860-mRNA-1
chr8_3	exon	44418	44660	44418	ID=Msa1267860-mRNA-1:exon:15;Parent=Msa1267860-mRNA-1
chr8_3	exon	44717	44848	44717	ID=Msa1267860-mRNA-1:exon:14;Parent=Msa1267860-mRNA-1
chr8_3	five_prime_UTR	44717	44848	44717	ID=Msa1267860-mRNA-1:five_prime_utr;Parent=Msa1267860-mRNA-1
chr8_3	five_prime_UTR	44604	44660	44604	ID=Msa1267860-mRNA-1:five_prime_utr;Parent=Msa1267860-mRNA-1
chr8_3	CDS	44418	44603	44418	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	44203	44265	44203	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	43598	43669	43598	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	43110	43217	43110	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	42900	42974	42900	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	42768	42821	42768	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	42552	42677	42552	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	42354	42443	42354	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	42124	42246	42124	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	41761	41868	41761	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	41466	41582	41466	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	41265	41321	41265	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	40440	40518	40440	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	CDS	40184	40233	40184	ID=Msa1267860-mRNA-1:cds;Parent=Msa1267860-mRNA-1
chr8_3	three_prime_UTR	39952	40183	39952	ID=Msa1267860-mRNA-1:three_prime_utr;Parent=Msa1267860-mRNA-1

Gene Sequence

>Msa1267860

ATGATGAGTAATAAGGTACCACCAACAAGAACTCGTACTAGAGTAGGGAAGTATGAGCTGGGAAAAACAATTGGTGAAGGGAGTTTTGCTAAGGTGAAGTTGGCTAAGAATGTTGAAAATGGAGATTATGTTGCCATCAAAATTCTTGATCGTAATCATGTACTGAAACACAAGATGATGGATCAGCTGAAGAGAGAAATTTCAGCTATGAAGATAATTAATCATCCAAACGTTATCAAAATATTTGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTTTTGGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATTGCTACACATGGGAAACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGAGTGTATCACAGAGATTTGAAGCCAGAGAATCTTCTTTTAGACACAAATGGTGTTCTTAAAGTTTCAGATTTTGGATTAAGTACATACTCACAGCAGGAGGATGAACTTCTCCGCACGGCGTGTGGAACACCGAATTACGTTGCACCAGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTTCATCAGATATTTGGTCATGTGGAGTCATTCTCTTTGTACTTATGGCCGGGTACTTGCCGTTCGACGAGCCAAATCTAACTTCACTGTATAGAAGAATTGGTAGAGCTGAGTTTAAATGTCCGTCTTGGTTTTCGCCTGGGGCAAAGAAACTGCTCCAGTCTATACTTAACCCGAACCCTATAACGAGGATAAAGATTCCTGAAATCTTGGAAGATGAATGGTTCAGAAAAGGATACAAGCCGGCTTGTTTTACCGAGGAAGAGGATGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGACGGAGACCAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCTTATTTCTAGATCGGATAGCTTCAATCTTGACAATTTGTTTGAGAGGGAAAAGGGGGTTGTAAAGCGCGAAACACATTTCACTTCACAGCGCCCTGCGAATGAAATTATGTCTAAGATTGAGGAGGCTGCCAAACCTCTCGGATTTAACGTTCACAAGCGAAATTATAAGATGAAGCTGCAGGGTGATAAAAGTGGAAGGAAGGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCATCCTTGCATATGGTGGAGCTGCGAAAAACAGGCGGCGACACACTAGAGTTTCACAAGGCAATTCTACAAAACCTTTTCATCAGGGTTGCAAGACATAGTGTGGAACACTAA

Protein sequence

>Msa1267860

MMSNKVPPTRTRTRVGKYELGKTIGEGSFAKVKLAKNVENGDYVAIKILDRNHVLKHKMMDQLKREISAMKIINHPNVIKIFEVMASKTKIYIVLELVNGGELFDKIATHGKLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDTNGVLKVSDFGLSTYSQQEDELLRTACGTPNYVAPEVLNDRGYVGSSSDIWSCGVILFVLMAGYLPFDEPNLTSLYRRIGRAEFKCPSWFSPGAKKLLQSILNPNPITRIKIPEILEDEWFRKGYKPACFTEEEDVNVDDVAAAFNDSKENLVTETKEKPVSMNAFELISRSDSFNLDNLFEREKGVVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKAILQNLFIRVARHSVEH*